AutoCloner

Multiple sequence alignment - TraesCS3A01G076300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G076300	chr3A	100.000	5502	0	0	1	5502	47245260	47250761	0.000000e+00	10161.0
1	TraesCS3A01G076300	chr3A	77.114	201	44	2	292	491	184348985	184349184	1.250000e-21	115.0
2	TraesCS3A01G076300	chr3B	88.907	4823	340	71	759	5502	59430438	59435144	0.000000e+00	5762.0
3	TraesCS3A01G076300	chr3B	81.221	639	104	12	755	1384	621475510	621476141	8.230000e-138	501.0
4	TraesCS3A01G076300	chr3B	81.210	628	106	9	764	1384	741417413	741416791	3.830000e-136	496.0
5	TraesCS3A01G076300	chr3D	91.074	4302	289	39	753	5003	36975678	36979935	0.000000e+00	5729.0
6	TraesCS3A01G076300	chr3D	93.258	89	6	0	5414	5502	36980591	36980679	1.240000e-26	132.0
7	TraesCS3A01G076300	chr4B	81.388	634	103	11	764	1388	664910372	664910999	2.290000e-138	503.0
8	TraesCS3A01G076300	chr4B	92.715	151	11	0	5	155	43229712	43229862	9.280000e-53	219.0
9	TraesCS3A01G076300	chr6B	81.191	638	104	12	755	1384	674951640	674952269	2.960000e-137	499.0
10	TraesCS3A01G076300	chr6B	92.105	152	12	0	4	155	156075674	156075825	1.200000e-51	215.0
11	TraesCS3A01G076300	chr6B	79.167	96	17	3	5007	5100	10618598	10618504	4.600000e-06	63.9
12	TraesCS3A01G076300	chr2B	81.034	638	107	10	755	1384	543196714	543196083	3.830000e-136	496.0
13	TraesCS3A01G076300	chr2B	92.715	151	11	0	3	153	286979955	286979805	9.280000e-53	219.0
14	TraesCS3A01G076300	chr2B	83.962	212	29	4	284	491	372378081	372378291	1.210000e-46	198.0
15	TraesCS3A01G076300	chr1B	81.111	630	107	9	755	1377	589132619	589133243	1.380000e-135	494.0
16	TraesCS3A01G076300	chr7B	80.967	641	102	15	755	1384	739379462	739380093	1.780000e-134	490.0
17	TraesCS3A01G076300	chr7B	82.317	492	76	6	284	765	77184873	77184383	3.070000e-112	416.0
18	TraesCS3A01G076300	chr7B	80.383	209	35	4	285	491	354209404	354209200	2.650000e-33	154.0
19	TraesCS3A01G076300	chr5A	82.549	510	63	14	282	767	128379353	128379860	5.090000e-115	425.0
20	TraesCS3A01G076300	chr5A	90.647	278	23	2	491	767	96421644	96421919	3.130000e-97	366.0
21	TraesCS3A01G076300	chr5A	89.892	277	28	0	491	767	393684687	393684411	1.880000e-94	357.0
22	TraesCS3A01G076300	chr5A	100.000	151	0	0	5	155	550718868	550718718	4.200000e-71	279.0
23	TraesCS3A01G076300	chr5A	92.105	152	12	0	4	155	650133659	650133810	1.200000e-51	215.0
24	TraesCS3A01G076300	chr4A	82.353	510	67	10	282	768	468143975	468144484	6.590000e-114	422.0
25	TraesCS3A01G076300	chr4A	90.357	280	24	3	491	769	319785001	319784724	1.130000e-96	364.0
26	TraesCS3A01G076300	chr4A	92.157	153	12	0	3	155	593348445	593348597	3.340000e-52	217.0
27	TraesCS3A01G076300	chr5B	82.222	495	71	14	282	768	222788361	222787876	1.430000e-110	411.0
28	TraesCS3A01G076300	chr2D	81.765	510	66	9	282	767	641953643	641954149	8.580000e-108	401.0
29	TraesCS3A01G076300	chr2D	83.036	112	15	3	5302	5412	142674620	142674512	1.260000e-16	99.0
30	TraesCS3A01G076300	chrUn	89.964	279	27	1	491	769	234491503	234491226	5.240000e-95	359.0
31	TraesCS3A01G076300	chr5D	92.763	152	11	0	4	155	410492091	410491940	2.580000e-53	220.0
32	TraesCS3A01G076300	chr6A	92.715	151	11	0	5	155	31392265	31392415	9.280000e-53	219.0
33	TraesCS3A01G076300	chr1D	92.105	152	12	0	4	155	351259972	351260123	1.200000e-51	215.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G076300	chr3A	47245260	47250761	5501	False	10161.0	10161	100.000	1	5502	1	chr3A.!!$F1	5501
1	TraesCS3A01G076300	chr3B	59430438	59435144	4706	False	5762.0	5762	88.907	759	5502	1	chr3B.!!$F1	4743
2	TraesCS3A01G076300	chr3B	621475510	621476141	631	False	501.0	501	81.221	755	1384	1	chr3B.!!$F2	629
3	TraesCS3A01G076300	chr3B	741416791	741417413	622	True	496.0	496	81.210	764	1384	1	chr3B.!!$R1	620
4	TraesCS3A01G076300	chr3D	36975678	36980679	5001	False	2930.5	5729	92.166	753	5502	2	chr3D.!!$F1	4749
5	TraesCS3A01G076300	chr4B	664910372	664910999	627	False	503.0	503	81.388	764	1388	1	chr4B.!!$F2	624
6	TraesCS3A01G076300	chr6B	674951640	674952269	629	False	499.0	499	81.191	755	1384	1	chr6B.!!$F2	629
7	TraesCS3A01G076300	chr2B	543196083	543196714	631	True	496.0	496	81.034	755	1384	1	chr2B.!!$R2	629
8	TraesCS3A01G076300	chr1B	589132619	589133243	624	False	494.0	494	81.111	755	1377	1	chr1B.!!$F1	622
9	TraesCS3A01G076300	chr7B	739379462	739380093	631	False	490.0	490	80.967	755	1384	1	chr7B.!!$F1	629
10	TraesCS3A01G076300	chr5A	128379353	128379860	507	False	425.0	425	82.549	282	767	1	chr5A.!!$F2	485
11	TraesCS3A01G076300	chr4A	468143975	468144484	509	False	422.0	422	82.353	282	768	1	chr4A.!!$F1	486
12	TraesCS3A01G076300	chr2D	641953643	641954149	506	False	401.0	401	81.765	282	767	1	chr2D.!!$F1	485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
41	42	0.040958	GAAACTGCCTGCACGACAAG	60.041	55.0	0.00	0.00	3.16	F
821	846	0.041839	GATATGCAGCTTTGCGGACG	60.042	55.0	0.00	37.69	4.79	F
1592	1641	0.179124	CTTTTCTCTCCTCCTCCGCG	60.179	60.0	0.00	0.00	6.46	F
2117	2166	0.393944	CCTTCCCCTTCCGCTTTACC	60.394	60.0	0.00	0.00	2.85	F
2887	2936	0.390860	CTCCTATTCTGGTGGCTCCG	59.609	60.0	0.53	39.52	4.63	F
3670	3728	0.611714	TCCTAGGAAACTTGTCGGGC	59.388	55.0	9.71	43.67	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1542	1588	0.318360	TGTGTCTGTCGCGACGATTT	60.318	50.0	31.88	38.42	2.17	R
2100	2149	0.037160	GTGGTAAAGCGGAAGGGGAA	59.963	55.0	0.00	0.00	3.97	R
2867	2916	0.107643	GGAGCCACCAGAATAGGAGC	59.892	60.0	0.00	38.79	4.70	R
3745	3803	0.253044	TTGTGCCTATGGAGAGTGCC	59.747	55.0	0.00	0.00	5.01	R
4327	4385	0.744281	CAACCCCAAACACACCACTC	59.256	55.0	0.00	0.00	3.51	R
5252	5453	0.174389	TGGTTGCATGCGTTTGTGTT	59.826	45.0	14.09	0.00	3.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	0.788391	GGTTCGAAACTACTGTGCGG	59.212	55.000	5.79	0.00	0.00	5.69
20	21	1.603678	GGTTCGAAACTACTGTGCGGA	60.604	52.381	5.79	0.00	0.00	5.54
21	22	1.454653	GTTCGAAACTACTGTGCGGAC	59.545	52.381	0.00	0.00	0.00	4.79
22	23	0.386352	TCGAAACTACTGTGCGGACG	60.386	55.000	1.60	0.00	0.00	4.79
23	24	0.386352	CGAAACTACTGTGCGGACGA	60.386	55.000	1.60	0.00	0.00	4.20
24	25	1.774639	GAAACTACTGTGCGGACGAA	58.225	50.000	1.60	0.00	0.00	3.85
25	26	2.129607	GAAACTACTGTGCGGACGAAA	58.870	47.619	1.60	0.00	0.00	3.46
26	27	1.494824	AACTACTGTGCGGACGAAAC	58.505	50.000	1.60	0.00	0.00	2.78
27	28	0.672342	ACTACTGTGCGGACGAAACT	59.328	50.000	1.60	0.00	0.00	2.66
28	29	1.060713	CTACTGTGCGGACGAAACTG	58.939	55.000	1.60	0.05	0.00	3.16
29	30	0.942410	TACTGTGCGGACGAAACTGC	60.942	55.000	1.60	0.00	41.89	4.40
30	31	2.954753	CTGTGCGGACGAAACTGCC	61.955	63.158	1.60	0.00	40.96	4.85
31	32	2.665185	GTGCGGACGAAACTGCCT	60.665	61.111	0.00	0.00	40.96	4.75
32	33	2.664851	TGCGGACGAAACTGCCTG	60.665	61.111	0.00	0.00	40.96	4.85
33	34	4.090057	GCGGACGAAACTGCCTGC	62.090	66.667	0.00	0.00	36.30	4.85
34	35	2.664851	CGGACGAAACTGCCTGCA	60.665	61.111	0.00	0.00	0.00	4.41
35	36	2.946762	GGACGAAACTGCCTGCAC	59.053	61.111	0.00	0.00	0.00	4.57
36	37	2.551270	GACGAAACTGCCTGCACG	59.449	61.111	0.00	0.00	0.00	5.34
37	38	1.954146	GACGAAACTGCCTGCACGA	60.954	57.895	6.83	0.00	0.00	4.35
38	39	2.159272	GACGAAACTGCCTGCACGAC	62.159	60.000	6.83	0.00	0.00	4.34
39	40	2.243957	CGAAACTGCCTGCACGACA	61.244	57.895	0.00	0.00	0.00	4.35
40	41	1.771073	CGAAACTGCCTGCACGACAA	61.771	55.000	0.00	0.00	0.00	3.18
41	42	0.040958	GAAACTGCCTGCACGACAAG	60.041	55.000	0.00	0.00	0.00	3.16
42	43	1.447317	AAACTGCCTGCACGACAAGG	61.447	55.000	0.00	0.00	0.00	3.61
43	44	3.052082	CTGCCTGCACGACAAGGG	61.052	66.667	0.00	0.00	0.00	3.95
44	45	4.641645	TGCCTGCACGACAAGGGG	62.642	66.667	0.00	0.00	0.00	4.79
45	46	4.329545	GCCTGCACGACAAGGGGA	62.330	66.667	0.00	0.00	0.00	4.81
46	47	2.358737	CCTGCACGACAAGGGGAC	60.359	66.667	0.00	0.00	0.00	4.46
47	48	2.738521	CTGCACGACAAGGGGACG	60.739	66.667	0.00	0.00	0.00	4.79
48	49	3.220999	CTGCACGACAAGGGGACGA	62.221	63.158	0.00	0.00	0.00	4.20
49	50	2.737376	GCACGACAAGGGGACGAC	60.737	66.667	0.00	0.00	0.00	4.34
50	51	2.430244	CACGACAAGGGGACGACG	60.430	66.667	0.00	0.00	0.00	5.12
51	52	3.677648	ACGACAAGGGGACGACGG	61.678	66.667	0.00	0.00	0.00	4.79
53	54	4.754667	GACAAGGGGACGACGGCC	62.755	72.222	12.69	12.69	0.00	6.13
55	56	4.323477	CAAGGGGACGACGGCCAA	62.323	66.667	23.92	0.00	0.00	4.52
56	57	3.562232	AAGGGGACGACGGCCAAA	61.562	61.111	23.92	0.00	0.00	3.28
57	58	2.902457	AAGGGGACGACGGCCAAAT	61.902	57.895	23.92	2.95	0.00	2.32
58	59	2.814913	AAGGGGACGACGGCCAAATC	62.815	60.000	23.92	7.79	0.00	2.17
59	60	2.822701	GGGACGACGGCCAAATCC	60.823	66.667	23.92	6.73	0.00	3.01
60	61	2.046700	GGACGACGGCCAAATCCA	60.047	61.111	16.92	0.00	0.00	3.41
61	62	2.106683	GGACGACGGCCAAATCCAG	61.107	63.158	16.92	0.00	0.00	3.86
62	63	2.746277	ACGACGGCCAAATCCAGC	60.746	61.111	2.24	0.00	0.00	4.85
63	64	3.508840	CGACGGCCAAATCCAGCC	61.509	66.667	2.24	0.00	46.17	4.85
67	68	2.044946	GGCCAAATCCAGCCGTCT	60.045	61.111	0.00	0.00	39.87	4.18
68	69	2.409870	GGCCAAATCCAGCCGTCTG	61.410	63.158	0.00	0.00	39.87	3.51
69	70	3.056313	GCCAAATCCAGCCGTCTGC	62.056	63.158	0.00	0.00	39.00	4.26
81	82	3.122937	GCCGTCTGCTTCACTTTAATG	57.877	47.619	0.00	0.00	36.87	1.90
82	83	2.484264	GCCGTCTGCTTCACTTTAATGT	59.516	45.455	0.00	0.00	36.87	2.71
83	84	3.058224	GCCGTCTGCTTCACTTTAATGTT	60.058	43.478	0.00	0.00	36.87	2.71
84	85	4.466828	CCGTCTGCTTCACTTTAATGTTG	58.533	43.478	0.00	0.00	0.00	3.33
85	86	4.024048	CCGTCTGCTTCACTTTAATGTTGT	60.024	41.667	0.00	0.00	0.00	3.32
86	87	4.905866	CGTCTGCTTCACTTTAATGTTGTG	59.094	41.667	0.00	0.00	0.00	3.33
87	88	4.676924	GTCTGCTTCACTTTAATGTTGTGC	59.323	41.667	0.00	0.00	0.00	4.57
88	89	4.337836	TCTGCTTCACTTTAATGTTGTGCA	59.662	37.500	9.84	9.84	0.00	4.57
89	90	5.009911	TCTGCTTCACTTTAATGTTGTGCAT	59.990	36.000	0.00	0.00	40.03	3.96
90	91	4.983538	TGCTTCACTTTAATGTTGTGCATG	59.016	37.500	0.00	0.00	37.96	4.06
91	92	4.386652	GCTTCACTTTAATGTTGTGCATGG	59.613	41.667	0.00	0.00	37.96	3.66
92	93	5.771469	CTTCACTTTAATGTTGTGCATGGA	58.229	37.500	0.00	0.00	37.96	3.41
93	94	5.119931	TCACTTTAATGTTGTGCATGGAC	57.880	39.130	10.90	10.90	37.96	4.02
94	95	3.913763	CACTTTAATGTTGTGCATGGACG	59.086	43.478	13.03	0.00	37.96	4.79
95	96	3.818210	ACTTTAATGTTGTGCATGGACGA	59.182	39.130	13.03	8.16	37.96	4.20
96	97	4.083324	ACTTTAATGTTGTGCATGGACGAG	60.083	41.667	13.03	0.00	37.96	4.18
97	98	1.896220	AATGTTGTGCATGGACGAGT	58.104	45.000	13.03	0.00	37.96	4.18
98	99	1.896220	ATGTTGTGCATGGACGAGTT	58.104	45.000	13.03	0.00	36.26	3.01
99	100	0.943673	TGTTGTGCATGGACGAGTTG	59.056	50.000	13.03	0.00	0.00	3.16
100	101	1.225855	GTTGTGCATGGACGAGTTGA	58.774	50.000	13.03	0.00	0.00	3.18
101	102	1.806542	GTTGTGCATGGACGAGTTGAT	59.193	47.619	13.03	0.00	0.00	2.57
102	103	1.725641	TGTGCATGGACGAGTTGATC	58.274	50.000	13.03	0.00	0.00	2.92
103	104	1.276138	TGTGCATGGACGAGTTGATCT	59.724	47.619	13.03	0.00	0.00	2.75
104	105	2.495669	TGTGCATGGACGAGTTGATCTA	59.504	45.455	13.03	0.00	0.00	1.98
105	106	2.860735	GTGCATGGACGAGTTGATCTAC	59.139	50.000	0.10	0.00	0.00	2.59
106	107	2.120232	GCATGGACGAGTTGATCTACG	58.880	52.381	1.55	0.00	0.00	3.51
107	108	2.479730	GCATGGACGAGTTGATCTACGT	60.480	50.000	1.55	0.00	41.57	3.57
108	109	3.770666	CATGGACGAGTTGATCTACGTT	58.229	45.455	0.00	0.00	39.04	3.99
109	110	3.211803	TGGACGAGTTGATCTACGTTG	57.788	47.619	0.00	0.00	39.04	4.10
110	111	2.555325	TGGACGAGTTGATCTACGTTGT	59.445	45.455	0.00	2.32	39.04	3.32
111	112	3.169733	GGACGAGTTGATCTACGTTGTC	58.830	50.000	15.53	15.53	39.04	3.18
112	113	2.839026	GACGAGTTGATCTACGTTGTCG	59.161	50.000	12.62	12.62	39.04	4.35
128	129	3.096541	TCGTTCACGAATCGTCCAC	57.903	52.632	4.88	4.52	46.30	4.02
129	130	0.311477	TCGTTCACGAATCGTCCACA	59.689	50.000	4.88	0.00	46.30	4.17
130	131	0.433492	CGTTCACGAATCGTCCACAC	59.567	55.000	4.88	0.00	43.02	3.82
131	132	1.493772	GTTCACGAATCGTCCACACA	58.506	50.000	4.88	0.00	38.32	3.72
132	133	1.191647	GTTCACGAATCGTCCACACAC	59.808	52.381	4.88	0.00	38.32	3.82
133	134	0.319211	TCACGAATCGTCCACACACC	60.319	55.000	4.88	0.00	38.32	4.16
134	135	0.598942	CACGAATCGTCCACACACCA	60.599	55.000	4.88	0.00	38.32	4.17
135	136	0.320374	ACGAATCGTCCACACACCAT	59.680	50.000	0.96	0.00	33.69	3.55
136	137	0.999406	CGAATCGTCCACACACCATC	59.001	55.000	0.00	0.00	0.00	3.51
137	138	0.999406	GAATCGTCCACACACCATCG	59.001	55.000	0.00	0.00	0.00	3.84
138	139	0.320374	AATCGTCCACACACCATCGT	59.680	50.000	0.00	0.00	0.00	3.73
139	140	0.389817	ATCGTCCACACACCATCGTG	60.390	55.000	0.00	0.00	46.11	4.35
150	151	1.860950	CACCATCGTGTGTATAGCAGC	59.139	52.381	0.00	0.00	35.10	5.25
151	152	1.131771	CCATCGTGTGTATAGCAGCG	58.868	55.000	0.00	0.00	0.00	5.18
152	153	0.504384	CATCGTGTGTATAGCAGCGC	59.496	55.000	0.00	0.00	0.00	5.92
153	154	0.385751	ATCGTGTGTATAGCAGCGCT	59.614	50.000	2.64	2.64	43.41	5.92
154	155	0.525455	TCGTGTGTATAGCAGCGCTG	60.525	55.000	32.83	32.83	40.10	5.18
164	165	4.932789	CAGCGCTGCCTAAGGTTA	57.067	55.556	26.68	0.00	0.00	2.85
165	166	2.384203	CAGCGCTGCCTAAGGTTAC	58.616	57.895	26.68	0.00	0.00	2.50
166	167	0.391130	CAGCGCTGCCTAAGGTTACA	60.391	55.000	26.68	0.00	0.00	2.41
167	168	0.541863	AGCGCTGCCTAAGGTTACAT	59.458	50.000	10.39	0.00	0.00	2.29
168	169	1.760613	AGCGCTGCCTAAGGTTACATA	59.239	47.619	10.39	0.00	0.00	2.29
169	170	1.865340	GCGCTGCCTAAGGTTACATAC	59.135	52.381	0.00	0.00	0.00	2.39
170	171	2.124903	CGCTGCCTAAGGTTACATACG	58.875	52.381	0.00	0.00	0.00	3.06
171	172	2.480845	GCTGCCTAAGGTTACATACGG	58.519	52.381	0.00	0.00	0.00	4.02
172	173	2.159000	GCTGCCTAAGGTTACATACGGT	60.159	50.000	0.00	0.00	0.00	4.83
173	174	3.680754	GCTGCCTAAGGTTACATACGGTT	60.681	47.826	0.00	0.00	0.00	4.44
174	175	4.510571	CTGCCTAAGGTTACATACGGTTT	58.489	43.478	0.00	0.00	0.00	3.27
175	176	4.506758	TGCCTAAGGTTACATACGGTTTC	58.493	43.478	0.00	0.00	0.00	2.78
176	177	4.223477	TGCCTAAGGTTACATACGGTTTCT	59.777	41.667	0.00	0.00	0.00	2.52
177	178	5.421693	TGCCTAAGGTTACATACGGTTTCTA	59.578	40.000	0.00	0.00	0.00	2.10
178	179	6.098695	TGCCTAAGGTTACATACGGTTTCTAT	59.901	38.462	0.00	0.00	0.00	1.98
179	180	7.287466	TGCCTAAGGTTACATACGGTTTCTATA	59.713	37.037	0.00	0.00	0.00	1.31
180	181	7.596621	GCCTAAGGTTACATACGGTTTCTATAC	59.403	40.741	0.00	0.00	0.00	1.47
181	182	8.632679	CCTAAGGTTACATACGGTTTCTATACA	58.367	37.037	0.00	0.00	0.00	2.29
182	183	9.674824	CTAAGGTTACATACGGTTTCTATACAG	57.325	37.037	0.00	0.00	0.00	2.74
183	184	7.651027	AGGTTACATACGGTTTCTATACAGT	57.349	36.000	0.00	0.00	0.00	3.55
184	185	8.752005	AGGTTACATACGGTTTCTATACAGTA	57.248	34.615	0.00	0.00	34.15	2.74
185	186	8.624776	AGGTTACATACGGTTTCTATACAGTAC	58.375	37.037	0.00	0.00	32.82	2.73
186	187	8.405531	GGTTACATACGGTTTCTATACAGTACA	58.594	37.037	0.00	0.00	32.82	2.90
187	188	9.787532	GTTACATACGGTTTCTATACAGTACAA	57.212	33.333	0.00	0.00	32.82	2.41
188	189	9.787532	TTACATACGGTTTCTATACAGTACAAC	57.212	33.333	0.00	0.00	32.82	3.32
189	190	7.829725	ACATACGGTTTCTATACAGTACAACA	58.170	34.615	0.00	0.00	32.82	3.33
190	191	8.306038	ACATACGGTTTCTATACAGTACAACAA	58.694	33.333	0.00	0.00	32.82	2.83
191	192	8.589629	CATACGGTTTCTATACAGTACAACAAC	58.410	37.037	0.00	0.00	32.82	3.32
192	193	6.752168	ACGGTTTCTATACAGTACAACAACT	58.248	36.000	0.00	0.00	0.00	3.16
193	194	7.885297	ACGGTTTCTATACAGTACAACAACTA	58.115	34.615	0.00	0.00	0.00	2.24
194	195	8.025445	ACGGTTTCTATACAGTACAACAACTAG	58.975	37.037	0.00	0.00	0.00	2.57
195	196	8.239314	CGGTTTCTATACAGTACAACAACTAGA	58.761	37.037	0.00	0.00	0.00	2.43
196	197	9.351570	GGTTTCTATACAGTACAACAACTAGAC	57.648	37.037	0.00	0.00	0.00	2.59
199	200	8.503458	TCTATACAGTACAACAACTAGACTCC	57.497	38.462	0.00	0.00	0.00	3.85
200	201	4.500603	ACAGTACAACAACTAGACTCCG	57.499	45.455	0.00	0.00	0.00	4.63
201	202	4.139786	ACAGTACAACAACTAGACTCCGA	58.860	43.478	0.00	0.00	0.00	4.55
202	203	4.765856	ACAGTACAACAACTAGACTCCGAT	59.234	41.667	0.00	0.00	0.00	4.18
203	204	5.096169	CAGTACAACAACTAGACTCCGATG	58.904	45.833	0.00	0.00	0.00	3.84
204	205	3.594603	ACAACAACTAGACTCCGATGG	57.405	47.619	0.00	0.00	0.00	3.51
205	206	3.162666	ACAACAACTAGACTCCGATGGA	58.837	45.455	0.00	0.00	0.00	3.41
206	207	3.576982	ACAACAACTAGACTCCGATGGAA	59.423	43.478	0.00	0.00	0.00	3.53
207	208	4.223032	ACAACAACTAGACTCCGATGGAAT	59.777	41.667	0.00	0.00	0.00	3.01
208	209	4.657436	ACAACTAGACTCCGATGGAATC	57.343	45.455	0.00	0.00	40.89	2.52
219	220	2.561733	GATGGAATCGTCGTGACAGA	57.438	50.000	0.41	0.00	31.13	3.41
220	221	2.186076	GATGGAATCGTCGTGACAGAC	58.814	52.381	0.41	0.00	37.76	3.51
221	222	0.955905	TGGAATCGTCGTGACAGACA	59.044	50.000	0.41	0.00	40.98	3.41
222	223	1.335597	TGGAATCGTCGTGACAGACAC	60.336	52.381	0.41	0.00	45.11	3.67
223	224	6.905254	GATGGAATCGTCGTGACAGACACA	62.905	50.000	3.89	0.00	40.73	3.72
232	233	1.496060	TGACAGACACACCCTTCACT	58.504	50.000	0.00	0.00	0.00	3.41
233	234	1.837439	TGACAGACACACCCTTCACTT	59.163	47.619	0.00	0.00	0.00	3.16
234	235	2.238646	TGACAGACACACCCTTCACTTT	59.761	45.455	0.00	0.00	0.00	2.66
235	236	3.279434	GACAGACACACCCTTCACTTTT	58.721	45.455	0.00	0.00	0.00	2.27
236	237	3.279434	ACAGACACACCCTTCACTTTTC	58.721	45.455	0.00	0.00	0.00	2.29
237	238	3.054361	ACAGACACACCCTTCACTTTTCT	60.054	43.478	0.00	0.00	0.00	2.52
238	239	3.561725	CAGACACACCCTTCACTTTTCTC	59.438	47.826	0.00	0.00	0.00	2.87
239	240	3.456277	AGACACACCCTTCACTTTTCTCT	59.544	43.478	0.00	0.00	0.00	3.10
240	241	3.809905	ACACACCCTTCACTTTTCTCTC	58.190	45.455	0.00	0.00	0.00	3.20
241	242	2.802816	CACACCCTTCACTTTTCTCTCG	59.197	50.000	0.00	0.00	0.00	4.04
242	243	2.434702	ACACCCTTCACTTTTCTCTCGT	59.565	45.455	0.00	0.00	0.00	4.18
243	244	3.060602	CACCCTTCACTTTTCTCTCGTC	58.939	50.000	0.00	0.00	0.00	4.20
244	245	2.037381	ACCCTTCACTTTTCTCTCGTCC	59.963	50.000	0.00	0.00	0.00	4.79
245	246	2.300437	CCCTTCACTTTTCTCTCGTCCT	59.700	50.000	0.00	0.00	0.00	3.85
246	247	3.244249	CCCTTCACTTTTCTCTCGTCCTT	60.244	47.826	0.00	0.00	0.00	3.36
247	248	3.991121	CCTTCACTTTTCTCTCGTCCTTC	59.009	47.826	0.00	0.00	0.00	3.46
248	249	3.284323	TCACTTTTCTCTCGTCCTTCG	57.716	47.619	0.00	0.00	41.41	3.79
249	250	1.721926	CACTTTTCTCTCGTCCTTCGC	59.278	52.381	0.00	0.00	39.67	4.70
250	251	1.340248	ACTTTTCTCTCGTCCTTCGCA	59.660	47.619	0.00	0.00	39.67	5.10
251	252	2.223971	ACTTTTCTCTCGTCCTTCGCAA	60.224	45.455	0.00	0.00	39.67	4.85
252	253	2.519377	TTTCTCTCGTCCTTCGCAAA	57.481	45.000	0.00	0.00	39.67	3.68
253	254	2.065993	TTCTCTCGTCCTTCGCAAAG	57.934	50.000	0.00	0.00	39.67	2.77
260	261	2.047274	CCTTCGCAAAGGCCTCGA	60.047	61.111	5.23	8.65	45.50	4.04
261	262	2.391389	CCTTCGCAAAGGCCTCGAC	61.391	63.158	14.09	1.77	45.50	4.20
262	263	2.358247	TTCGCAAAGGCCTCGACC	60.358	61.111	14.09	0.00	36.38	4.79
263	264	2.788191	CTTCGCAAAGGCCTCGACCT	62.788	60.000	14.09	0.00	43.91	3.85
264	265	2.781595	TTCGCAAAGGCCTCGACCTC	62.782	60.000	14.09	0.00	39.93	3.85
265	266	2.436824	GCAAAGGCCTCGACCTCC	60.437	66.667	5.23	0.00	39.93	4.30
266	267	2.125512	CAAAGGCCTCGACCTCCG	60.126	66.667	5.23	0.00	39.93	4.63
267	268	4.083862	AAAGGCCTCGACCTCCGC	62.084	66.667	5.23	0.00	39.93	5.54
272	273	2.439701	CCTCGACCTCCGCCACTA	60.440	66.667	0.00	0.00	38.37	2.74
273	274	2.482333	CCTCGACCTCCGCCACTAG	61.482	68.421	0.00	0.00	38.37	2.57
274	275	2.439701	TCGACCTCCGCCACTAGG	60.440	66.667	0.00	0.00	38.93	3.02
276	277	2.348888	CGACCTCCGCCACTAGGTT	61.349	63.158	0.00	0.00	46.22	3.50
277	278	1.033746	CGACCTCCGCCACTAGGTTA	61.034	60.000	0.00	0.00	46.22	2.85
278	279	0.459078	GACCTCCGCCACTAGGTTAC	59.541	60.000	0.00	0.00	46.22	2.50
279	280	0.251922	ACCTCCGCCACTAGGTTACA	60.252	55.000	0.00	0.00	43.77	2.41
280	281	1.120530	CCTCCGCCACTAGGTTACAT	58.879	55.000	0.00	0.00	37.19	2.29
287	288	3.004002	CGCCACTAGGTTACATACGATGA	59.996	47.826	0.00	0.00	37.19	2.92
297	298	8.561738	AGGTTACATACGATGACTTTGATTTT	57.438	30.769	0.00	0.00	0.00	1.82
300	301	8.665685	GTTACATACGATGACTTTGATTTTCCT	58.334	33.333	0.00	0.00	0.00	3.36
304	305	5.799213	ACGATGACTTTGATTTTCCTCTCT	58.201	37.500	0.00	0.00	0.00	3.10
305	306	6.936279	ACGATGACTTTGATTTTCCTCTCTA	58.064	36.000	0.00	0.00	0.00	2.43
324	325	0.042731	AGGAGAGAAATGTCCCCGGA	59.957	55.000	0.73	0.00	32.70	5.14
339	340	2.903357	GGAGGAATCGCTCTGCCA	59.097	61.111	0.00	0.00	0.00	4.92
360	361	2.086054	AGAGTAAAAGTGCTCCTGCG	57.914	50.000	0.00	0.00	43.34	5.18
368	369	3.630013	TGCTCCTGCGCAAGTCCT	61.630	61.111	13.05	0.00	43.34	3.85
370	371	1.144936	GCTCCTGCGCAAGTCCTAT	59.855	57.895	13.05	0.00	41.68	2.57
378	379	1.268352	GCGCAAGTCCTATCTCGAGAT	59.732	52.381	29.58	29.58	41.68	2.75
385	386	1.527433	CCTATCTCGAGATGGCGGCA	61.527	60.000	33.22	16.34	36.05	5.69
389	390	2.755876	TCGAGATGGCGGCACTCT	60.756	61.111	26.52	23.06	0.00	3.24
393	394	1.954362	GAGATGGCGGCACTCTGTCT	61.954	60.000	24.19	18.98	0.00	3.41
394	395	1.078848	GATGGCGGCACTCTGTCTT	60.079	57.895	16.34	0.00	0.00	3.01
404	405	3.879892	GGCACTCTGTCTTGAAAGTCTTT	59.120	43.478	0.00	0.00	0.00	2.52
406	407	5.163612	GGCACTCTGTCTTGAAAGTCTTTTT	60.164	40.000	0.00	0.00	0.00	1.94
442	443	8.984112	TTCTAGGGTAAATGGGCTTATATACT	57.016	34.615	0.00	0.00	0.00	2.12
453	454	6.571624	TGGGCTTATATACTAGAAGATGGGT	58.428	40.000	0.00	0.00	0.00	4.51
520	545	3.577805	CCCCCTATGGTACTTCTTTGG	57.422	52.381	0.00	0.00	0.00	3.28
522	547	3.268595	CCCCCTATGGTACTTCTTTGGTT	59.731	47.826	0.00	0.00	0.00	3.67
577	602	5.708948	TCGTAAAATTTCAGCTCATTTGGG	58.291	37.500	0.00	0.00	0.00	4.12
606	631	7.287696	TGTGCAGAATAGGTATCTCTGACATAA	59.712	37.037	2.57	0.00	39.15	1.90
615	640	8.779354	AGGTATCTCTGACATAACTTTTTCAC	57.221	34.615	0.00	0.00	0.00	3.18
616	641	8.375506	AGGTATCTCTGACATAACTTTTTCACA	58.624	33.333	0.00	0.00	0.00	3.58
626	651	9.696917	GACATAACTTTTTCACATCCAGAATTT	57.303	29.630	0.00	0.00	0.00	1.82
634	659	4.592942	TCACATCCAGAATTTTAGCTGCT	58.407	39.130	7.57	7.57	0.00	4.24
647	672	1.379576	GCTGCTGGCAATCTCCCTT	60.380	57.895	0.00	0.00	41.35	3.95
650	675	1.897802	CTGCTGGCAATCTCCCTTTTT	59.102	47.619	0.00	0.00	0.00	1.94
702	727	6.899393	AGACATTAGAATTGCTCCACAAAA	57.101	33.333	0.00	0.00	42.86	2.44
768	793	4.980590	TGATGCAAAATGGACGTATCAAC	58.019	39.130	0.00	0.00	30.28	3.18
821	846	0.041839	GATATGCAGCTTTGCGGACG	60.042	55.000	0.00	0.00	37.69	4.79
826	851	2.034879	CAGCTTTGCGGACGTCCAT	61.035	57.895	32.80	7.51	35.14	3.41
869	895	9.138062	CAAAACCATTATCGTTGAATGAATCAA	57.862	29.630	0.00	0.00	45.71	2.57
890	924	0.604780	CAGGGCAACACTCCAGACAG	60.605	60.000	0.00	0.00	39.74	3.51
930	964	2.602568	ACCCCCGCACGACTAAGT	60.603	61.111	0.00	0.00	0.00	2.24
966	1000	2.158957	ACCATATCTGCCAACGACGAAT	60.159	45.455	0.00	0.00	0.00	3.34
984	1018	1.533625	ATCATGAACCCAACACACGG	58.466	50.000	0.00	0.00	0.00	4.94
986	1020	1.028905	CATGAACCCAACACACGGTT	58.971	50.000	0.00	0.00	45.12	4.44
1079	1114	3.130160	CTCTGGAGCAAAGGCCGC	61.130	66.667	0.00	0.00	42.56	6.53
1171	1209	7.528996	ACAGACTGATTTTCAAATTCATCCA	57.471	32.000	10.08	0.00	0.00	3.41
1215	1253	4.174009	TGTCGAGAAATGATCCGAAGAAC	58.826	43.478	0.00	0.00	34.19	3.01
1223	1261	7.989826	AGAAATGATCCGAAGAACCTTTATTG	58.010	34.615	0.00	0.00	0.00	1.90
1228	1266	4.885413	TCCGAAGAACCTTTATTGAACGA	58.115	39.130	0.00	0.00	0.00	3.85
1264	1303	4.067896	AGTGAAGCAAGACGATGAACAAT	58.932	39.130	0.00	0.00	0.00	2.71
1268	1307	6.036517	GTGAAGCAAGACGATGAACAATCTAT	59.963	38.462	0.00	0.00	32.61	1.98
1321	1362	1.071542	ACATGTGTGGATCCGACAACA	59.928	47.619	17.78	13.82	0.00	3.33
1331	1373	1.125093	TCCGACAACACCCTCACCAT	61.125	55.000	0.00	0.00	0.00	3.55
1334	1376	0.673644	GACAACACCCTCACCATCGG	60.674	60.000	0.00	0.00	0.00	4.18
1338	1380	3.000819	ACCCTCACCATCGGCGAA	61.001	61.111	15.93	0.00	0.00	4.70
1345	1391	0.744414	CACCATCGGCGAATGAGGTT	60.744	55.000	15.93	0.00	0.00	3.50
1393	1439	3.379445	GACGGAAGGAGACGCCCA	61.379	66.667	0.00	0.00	37.37	5.36
1456	1502	0.892358	AAGAGTCTGGTACGGTGCGA	60.892	55.000	0.00	0.00	35.30	5.10
1477	1523	6.150976	TGCGAATAAATCATCTTTGTCCTTGT	59.849	34.615	0.00	0.00	0.00	3.16
1478	1524	7.029563	GCGAATAAATCATCTTTGTCCTTGTT	58.970	34.615	0.00	0.00	0.00	2.83
1495	1541	0.878961	GTTGAGACACGTGGTGACCC	60.879	60.000	21.57	3.28	36.96	4.46
1530	1576	4.095932	CGAGTTCCATACAGTACAGCTACA	59.904	45.833	0.00	0.00	0.00	2.74
1542	1588	1.677966	AGCTACAAGGCTCCGACGA	60.678	57.895	0.00	0.00	38.24	4.20
1592	1641	0.179124	CTTTTCTCTCCTCCTCCGCG	60.179	60.000	0.00	0.00	0.00	6.46
1669	1718	2.594592	GTCCACACGCAAAGGCCT	60.595	61.111	0.00	0.00	36.38	5.19
2091	2140	0.546598	CTTAACTTCATCCGCCCCCT	59.453	55.000	0.00	0.00	0.00	4.79
2098	2147	2.058001	CATCCGCCCCCTTTTTCCC	61.058	63.158	0.00	0.00	0.00	3.97
2099	2148	3.311511	ATCCGCCCCCTTTTTCCCC	62.312	63.158	0.00	0.00	0.00	4.81
2100	2149	3.992641	CCGCCCCCTTTTTCCCCT	61.993	66.667	0.00	0.00	0.00	4.79
2101	2150	2.119611	CGCCCCCTTTTTCCCCTT	59.880	61.111	0.00	0.00	0.00	3.95
2102	2151	1.982395	CGCCCCCTTTTTCCCCTTC	60.982	63.158	0.00	0.00	0.00	3.46
2117	2166	0.393944	CCTTCCCCTTCCGCTTTACC	60.394	60.000	0.00	0.00	0.00	2.85
2124	2173	1.396996	CCTTCCGCTTTACCACGATTG	59.603	52.381	0.00	0.00	0.00	2.67
2154	2203	5.048434	CCTTCTTCTTCCTCATTTGTTGGAC	60.048	44.000	0.00	0.00	0.00	4.02
2157	2206	5.707298	TCTTCTTCCTCATTTGTTGGACATC	59.293	40.000	0.00	0.00	0.00	3.06
2206	2255	8.661352	ATTCTTTCAAAATTCAACCGAAACAT	57.339	26.923	0.00	0.00	34.01	2.71
2208	2257	8.568732	TCTTTCAAAATTCAACCGAAACATAC	57.431	30.769	0.00	0.00	34.01	2.39
2215	2264	6.583912	ATTCAACCGAAACATACGTGATAG	57.416	37.500	0.00	0.00	34.01	2.08
2218	2267	5.574055	TCAACCGAAACATACGTGATAGTTC	59.426	40.000	0.00	0.00	0.00	3.01
2277	2326	4.022242	ACTGCGCCGAATGAATATACTACT	60.022	41.667	4.18	0.00	0.00	2.57
2278	2327	4.482386	TGCGCCGAATGAATATACTACTC	58.518	43.478	4.18	0.00	0.00	2.59
2279	2328	3.858238	GCGCCGAATGAATATACTACTCC	59.142	47.826	0.00	0.00	0.00	3.85
2281	2330	4.158025	CGCCGAATGAATATACTACTCCCT	59.842	45.833	0.00	0.00	0.00	4.20
2282	2331	5.336531	CGCCGAATGAATATACTACTCCCTT	60.337	44.000	0.00	0.00	0.00	3.95
2283	2332	6.127814	CGCCGAATGAATATACTACTCCCTTA	60.128	42.308	0.00	0.00	0.00	2.69
2287	2336	9.976511	CGAATGAATATACTACTCCCTTACAAA	57.023	33.333	0.00	0.00	0.00	2.83
2320	2369	7.340487	AGGTATCTGTCTGAAATTGGAAATTCC	59.660	37.037	4.79	4.79	36.96	3.01
2339	2388	5.677319	TTCCTATGAGTACAAGGGTTCAG	57.323	43.478	0.00	0.00	0.00	3.02
2349	2398	2.033141	GGGTTCAGCAGCTGCAGA	59.967	61.111	38.24	33.05	45.16	4.26
2390	2439	2.569404	AGAGCTGTGAAAACTAGGGAGG	59.431	50.000	0.00	0.00	0.00	4.30
2391	2440	2.567615	GAGCTGTGAAAACTAGGGAGGA	59.432	50.000	0.00	0.00	0.00	3.71
2392	2441	2.569404	AGCTGTGAAAACTAGGGAGGAG	59.431	50.000	0.00	0.00	0.00	3.69
2452	2501	5.676744	CACGTATTCAAACCGCATATTCTTG	59.323	40.000	0.00	0.00	0.00	3.02
2455	2504	5.895636	ATTCAAACCGCATATTCTTGTGA	57.104	34.783	0.00	0.00	0.00	3.58
2504	2553	6.091713	GGATTGCCATTTGTCTCAAAAGATTG	59.908	38.462	0.00	0.00	37.92	2.67
2507	2556	4.387862	GCCATTTGTCTCAAAAGATTGCTG	59.612	41.667	0.00	0.00	36.45	4.41
2510	2559	6.480981	CCATTTGTCTCAAAAGATTGCTGTTT	59.519	34.615	0.00	0.00	36.45	2.83
2511	2560	7.306983	CCATTTGTCTCAAAAGATTGCTGTTTC	60.307	37.037	0.00	0.00	36.45	2.78
2605	2654	8.202137	TGTAGACTTGTAGTTTAAGCAACTTCT	58.798	33.333	0.00	0.00	43.89	2.85
2632	2681	1.336887	GCAGTCGGCACTTGTTCTAGA	60.337	52.381	0.00	0.00	43.97	2.43
2633	2682	2.600731	CAGTCGGCACTTGTTCTAGAG	58.399	52.381	0.00	0.00	0.00	2.43
2673	2722	6.371825	GGAAAGCAACATGGGTATATACTAGC	59.628	42.308	12.54	6.69	0.00	3.42
2764	2813	2.858941	GCCGGAGAGAAAGATACGTTTC	59.141	50.000	5.05	0.00	36.79	2.78
2775	2824	3.062042	AGATACGTTTCGGAAACACACC	58.938	45.455	27.57	15.94	41.44	4.16
2856	2905	0.450184	CGCCAAGTTGGTAAATCCCG	59.550	55.000	22.85	12.00	40.46	5.14
2867	2916	5.031066	TGGTAAATCCCGGAGATTACTTG	57.969	43.478	15.73	0.00	44.75	3.16
2887	2936	0.390860	CTCCTATTCTGGTGGCTCCG	59.609	60.000	0.53	0.00	39.52	4.63
2893	2942	1.310030	TCTGGTGGCTCCGGATACT	59.690	57.895	12.98	0.00	45.77	2.12
2908	2957	4.876107	CCGGATACTTGCATGTTTTACTCT	59.124	41.667	10.85	0.00	0.00	3.24
2987	3043	3.368571	GCCCTCTGTGGTGCTTGC	61.369	66.667	0.00	0.00	0.00	4.01
2992	3048	1.005748	TCTGTGGTGCTTGCGAGAG	60.006	57.895	4.70	0.00	0.00	3.20
3041	3097	2.695127	ATCTCTGAAAGCTGCCTCTG	57.305	50.000	0.00	0.00	0.00	3.35
3154	3210	4.052159	TGATGCCGATTTGTTTGTTTGT	57.948	36.364	0.00	0.00	0.00	2.83
3155	3211	3.801050	TGATGCCGATTTGTTTGTTTGTG	59.199	39.130	0.00	0.00	0.00	3.33
3156	3212	3.238108	TGCCGATTTGTTTGTTTGTGT	57.762	38.095	0.00	0.00	0.00	3.72
3157	3213	2.926200	TGCCGATTTGTTTGTTTGTGTG	59.074	40.909	0.00	0.00	0.00	3.82
3158	3214	2.926838	GCCGATTTGTTTGTTTGTGTGT	59.073	40.909	0.00	0.00	0.00	3.72
3159	3215	3.369451	GCCGATTTGTTTGTTTGTGTGTT	59.631	39.130	0.00	0.00	0.00	3.32
3160	3216	4.143009	GCCGATTTGTTTGTTTGTGTGTTT	60.143	37.500	0.00	0.00	0.00	2.83
3161	3217	5.312054	CCGATTTGTTTGTTTGTGTGTTTG	58.688	37.500	0.00	0.00	0.00	2.93
3177	3233	2.691011	TGTTTGTTACCTGCTGGTTTCC	59.309	45.455	21.33	9.46	46.05	3.13
3179	3235	2.270352	TGTTACCTGCTGGTTTCCTG	57.730	50.000	21.33	0.00	46.05	3.86
3232	3288	7.601508	ACTTTGGTCCTATAACTTTTACTGTCG	59.398	37.037	0.00	0.00	0.00	4.35
3269	3325	4.232221	CTGCTGGTAAATTGCTGACAAAG	58.768	43.478	0.00	0.00	39.77	2.77
3322	3378	8.462016	AGTGGTTATCTTTCTATGCAAACAATC	58.538	33.333	0.00	0.00	0.00	2.67
3472	3530	2.154462	CTTACTGCTTGGGGAACACTG	58.846	52.381	0.00	0.00	0.00	3.66
3634	3692	6.226787	ACTACAGTCTTATGCATTCATAGGC	58.773	40.000	3.54	0.00	36.60	3.93
3670	3728	0.611714	TCCTAGGAAACTTGTCGGGC	59.388	55.000	9.71	0.00	43.67	6.13
3706	3764	2.416893	GAGAACGCAGGAACCAAAGATC	59.583	50.000	0.00	0.00	0.00	2.75
3718	3776	2.485426	ACCAAAGATCATGTTCACAGCG	59.515	45.455	6.55	0.00	0.00	5.18
3745	3803	1.001641	CCTCCTTGGCCTCCAACTG	60.002	63.158	3.32	0.00	38.75	3.16
3792	3850	1.000521	TGCCAAGCTCCCATGGAAG	60.001	57.895	15.22	2.23	39.12	3.46
3814	3872	3.072944	CTCCAGAAGCCTTCTTGTCAAG	58.927	50.000	3.68	6.21	38.11	3.02
3820	3878	1.696336	AGCCTTCTTGTCAAGAGCTCA	59.304	47.619	18.82	4.48	39.03	4.26
3838	3896	1.066502	TCATTGTCGGCCAATCTTCGA	60.067	47.619	2.24	0.00	41.93	3.71
3892	3950	3.614390	GCGAGGAAAGGATATTCTACCCG	60.614	52.174	4.18	7.94	0.00	5.28
3955	4013	2.746362	CTCTGGAACCATGTTCTGCTTC	59.254	50.000	6.89	0.00	0.00	3.86
3979	4037	0.997932	CACAGCATCTGAAGCTCGAC	59.002	55.000	4.13	0.00	41.14	4.20
4000	4058	1.412343	TCATCGATCATCGGCCTTTCA	59.588	47.619	7.33	0.00	40.88	2.69
4033	4091	0.972983	AGGTCATGGTCGTCTCCCTG	60.973	60.000	0.00	0.00	0.00	4.45
4247	4305	1.424493	CCTGCCGTTCTCGATCTTGC	61.424	60.000	0.00	0.00	39.71	4.01
4252	4310	0.910513	CGTTCTCGATCTTGCTGTCG	59.089	55.000	0.00	0.00	39.71	4.35
4327	4385	1.438651	TGGTCTTTTCGGCGATTCTG	58.561	50.000	11.76	1.69	0.00	3.02
4387	4445	2.128507	GTCCTCTGGGGGCTACTCG	61.129	68.421	0.00	0.00	36.61	4.18
4426	4484	2.730604	CTGCAAAGTTTGGCCGCG	60.731	61.111	17.11	0.00	0.00	6.46
4518	4576	4.233005	AGATGACGAGCATATTGACATCG	58.767	43.478	0.00	0.00	44.48	3.84
4548	4606	6.565234	AGATCTTGTTAGGTACTGAATGACG	58.435	40.000	0.00	0.00	41.52	4.35
4549	4607	5.717078	TCTTGTTAGGTACTGAATGACGT	57.283	39.130	0.00	0.00	41.52	4.34
4627	4685	7.781324	ATCCAAATGTGTTCTTTATTGACCT	57.219	32.000	0.00	0.00	0.00	3.85
4641	4699	7.771361	TCTTTATTGACCTTCAGTGTACACAAA	59.229	33.333	27.06	18.59	0.00	2.83
4729	4815	9.477484	GTCAGTATATACTTTCATTGGGTAGTG	57.523	37.037	12.87	0.00	33.46	2.74
4730	4816	8.148351	TCAGTATATACTTTCATTGGGTAGTGC	58.852	37.037	12.87	0.00	33.46	4.40
4732	4818	7.931948	AGTATATACTTTCATTGGGTAGTGCAC	59.068	37.037	9.40	9.40	31.13	4.57
4742	4828	1.207089	GGGTAGTGCACATGCTACTCA	59.793	52.381	21.04	0.00	38.28	3.41
4744	4830	1.920574	GTAGTGCACATGCTACTCACG	59.079	52.381	21.04	0.00	42.66	4.35
4765	4851	2.419667	CCGTCCCAAAATAAGTGTCGT	58.580	47.619	0.00	0.00	0.00	4.34
4773	4859	6.016943	TCCCAAAATAAGTGTCGTTGGTTTAG	60.017	38.462	0.00	0.00	37.60	1.85
4774	4860	6.238814	CCCAAAATAAGTGTCGTTGGTTTAGT	60.239	38.462	0.00	0.00	37.60	2.24
4776	4862	8.344098	CCAAAATAAGTGTCGTTGGTTTAGTTA	58.656	33.333	0.00	0.00	35.12	2.24
4827	4939	2.735134	GCGACACTTATTTTGAGACGGT	59.265	45.455	0.00	0.00	0.00	4.83
4894	5026	5.607168	TCTAGGATAGTGAGGTCCATGAT	57.393	43.478	0.00	0.00	40.38	2.45
4964	5096	8.031277	AGATCTTCATATTTGAACAAGTTTGCC	58.969	33.333	0.00	0.00	36.94	4.52
4995	5182	5.829986	TGGTACACACTAGGTAACATCCTA	58.170	41.667	0.00	0.00	33.71	2.94
5088	5277	7.817418	AAAACTCCAAAGTTAAGTATGCTCA	57.183	32.000	0.00	0.00	45.07	4.26
5113	5302	9.669353	CAGCTTAAATTATGTGATAATGGTGTC	57.331	33.333	0.00	0.00	35.71	3.67
5118	5307	2.309528	TGTGATAATGGTGTCGGAGC	57.690	50.000	0.00	0.00	0.00	4.70
5122	5311	2.205074	GATAATGGTGTCGGAGCAGTG	58.795	52.381	0.00	0.00	34.93	3.66
5125	5314	0.603707	ATGGTGTCGGAGCAGTGTTG	60.604	55.000	0.00	0.00	34.93	3.33
5130	5319	1.872952	TGTCGGAGCAGTGTTGATTTG	59.127	47.619	0.00	0.00	0.00	2.32
5134	5323	2.811431	CGGAGCAGTGTTGATTTGGTTA	59.189	45.455	0.00	0.00	0.00	2.85
5135	5324	3.440173	CGGAGCAGTGTTGATTTGGTTAT	59.560	43.478	0.00	0.00	0.00	1.89
5171	5361	2.795681	CGTGTGAAGTGTGCTGCATTTT	60.796	45.455	5.27	0.46	31.86	1.82
5186	5376	2.435437	GCATTTTGGGTGATAAGGCCAT	59.565	45.455	5.01	0.00	0.00	4.40
5204	5394	3.181487	GCCATCATATTTGAAAGCGGTGT	60.181	43.478	0.00	0.00	34.96	4.16
5230	5431	4.887071	AGAACAATAGCCAAACAACTGTGA	59.113	37.500	0.00	0.00	0.00	3.58
5240	5441	6.714810	AGCCAAACAACTGTGATTTACATCTA	59.285	34.615	0.00	0.00	38.92	1.98
5243	5444	8.567948	CCAAACAACTGTGATTTACATCTACTT	58.432	33.333	0.00	0.00	38.92	2.24
5246	5447	9.998106	AACAACTGTGATTTACATCTACTTACT	57.002	29.630	0.00	0.00	38.92	2.24
5247	5448	9.640963	ACAACTGTGATTTACATCTACTTACTC	57.359	33.333	0.00	0.00	38.92	2.59
5249	5450	8.596781	ACTGTGATTTACATCTACTTACTCCT	57.403	34.615	0.00	0.00	38.92	3.69
5250	5451	8.470805	ACTGTGATTTACATCTACTTACTCCTG	58.529	37.037	0.00	0.00	38.92	3.86
5252	5453	9.031537	TGTGATTTACATCTACTTACTCCTGAA	57.968	33.333	0.00	0.00	33.42	3.02
5253	5454	9.871238	GTGATTTACATCTACTTACTCCTGAAA	57.129	33.333	0.00	0.00	0.00	2.69
5256	5457	9.654663	ATTTACATCTACTTACTCCTGAAACAC	57.345	33.333	0.00	0.00	0.00	3.32
5257	5458	6.665992	ACATCTACTTACTCCTGAAACACA	57.334	37.500	0.00	0.00	0.00	3.72
5258	5459	7.062749	ACATCTACTTACTCCTGAAACACAA	57.937	36.000	0.00	0.00	0.00	3.33
5259	5460	7.506114	ACATCTACTTACTCCTGAAACACAAA	58.494	34.615	0.00	0.00	0.00	2.83
5260	5461	7.441458	ACATCTACTTACTCCTGAAACACAAAC	59.559	37.037	0.00	0.00	0.00	2.93
5261	5462	5.981315	TCTACTTACTCCTGAAACACAAACG	59.019	40.000	0.00	0.00	0.00	3.60
5262	5463	3.311596	ACTTACTCCTGAAACACAAACGC	59.688	43.478	0.00	0.00	0.00	4.84
5263	5464	1.745232	ACTCCTGAAACACAAACGCA	58.255	45.000	0.00	0.00	0.00	5.24
5264	5465	2.297701	ACTCCTGAAACACAAACGCAT	58.702	42.857	0.00	0.00	0.00	4.73
5265	5466	2.033299	ACTCCTGAAACACAAACGCATG	59.967	45.455	0.00	0.00	0.00	4.06
5266	5467	1.130955	CCTGAAACACAAACGCATGC	58.869	50.000	7.91	7.91	0.00	4.06
5272	5473	0.174389	ACACAAACGCATGCAACCAA	59.826	45.000	19.57	0.00	0.00	3.67
5278	5479	2.366584	CGCATGCAACCAAACAGCG	61.367	57.895	19.57	0.00	37.68	5.18
5294	5495	3.039011	ACAGCGGTCCTTAATATGTCCT	58.961	45.455	0.00	0.00	0.00	3.85
5295	5496	4.220724	ACAGCGGTCCTTAATATGTCCTA	58.779	43.478	0.00	0.00	0.00	2.94
5296	5497	4.281182	ACAGCGGTCCTTAATATGTCCTAG	59.719	45.833	0.00	0.00	0.00	3.02
5297	5498	4.281182	CAGCGGTCCTTAATATGTCCTAGT	59.719	45.833	0.00	0.00	0.00	2.57
5298	5499	4.281182	AGCGGTCCTTAATATGTCCTAGTG	59.719	45.833	0.00	0.00	0.00	2.74
5300	5501	5.242393	GCGGTCCTTAATATGTCCTAGTGTA	59.758	44.000	0.00	0.00	0.00	2.90
5301	5502	6.239120	GCGGTCCTTAATATGTCCTAGTGTAA	60.239	42.308	0.00	0.00	0.00	2.41
5302	5503	7.525029	GCGGTCCTTAATATGTCCTAGTGTAAT	60.525	40.741	0.00	0.00	0.00	1.89
5303	5504	7.813148	CGGTCCTTAATATGTCCTAGTGTAATG	59.187	40.741	0.00	0.00	0.00	1.90
5308	5509	9.640963	CTTAATATGTCCTAGTGTAATGTAGGC	57.359	37.037	0.00	0.00	36.49	3.93
5311	5514	6.651975	ATGTCCTAGTGTAATGTAGGCTAC	57.348	41.667	17.76	17.76	36.49	3.58
5342	5545	4.039004	TGTGCACAACATGATTTTTAGCCT	59.961	37.500	19.28	0.00	32.36	4.58
5347	5550	5.290158	CACAACATGATTTTTAGCCTGCATC	59.710	40.000	0.00	0.00	0.00	3.91
5349	5552	5.864418	ACATGATTTTTAGCCTGCATCAT	57.136	34.783	0.00	0.00	35.40	2.45
5356	5559	2.627515	TAGCCTGCATCATCTCAACC	57.372	50.000	0.00	0.00	0.00	3.77
5359	5562	1.407851	GCCTGCATCATCTCAACCAGA	60.408	52.381	0.00	0.00	34.78	3.86
5360	5563	2.748798	GCCTGCATCATCTCAACCAGAT	60.749	50.000	0.00	0.00	43.33	2.90
5364	5567	3.054213	TGCATCATCTCAACCAGATCCAA	60.054	43.478	0.00	0.00	40.20	3.53
5366	5569	4.215827	GCATCATCTCAACCAGATCCAATC	59.784	45.833	0.00	0.00	40.20	2.67
5375	5578	2.768527	ACCAGATCCAATCGAGTCACAT	59.231	45.455	0.00	0.00	0.00	3.21
5441	5909	4.518970	ACGTTGAGTGGCAAATTAAGTCAT	59.481	37.500	0.00	0.00	38.44	3.06
5462	5930	5.893824	TCATTGACTGACTTAGCCTCTCATA	59.106	40.000	0.00	0.00	0.00	2.15
5482	5950	0.949397	CACCATGCAATCTCCATCCG	59.051	55.000	0.00	0.00	0.00	4.18
5491	5959	0.747255	ATCTCCATCCGAGGACAACG	59.253	55.000	0.00	0.00	39.30	4.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	1.454653	GTCCGCACAGTAGTTTCGAAC	59.545	52.381	0.00	0.00	0.00	3.95
2	3	1.774639	GTCCGCACAGTAGTTTCGAA	58.225	50.000	0.00	0.00	0.00	3.71
3	4	0.386352	CGTCCGCACAGTAGTTTCGA	60.386	55.000	0.00	0.00	0.00	3.71
4	5	0.386352	TCGTCCGCACAGTAGTTTCG	60.386	55.000	0.00	0.00	0.00	3.46
7	8	1.068127	AGTTTCGTCCGCACAGTAGTT	59.932	47.619	0.00	0.00	0.00	2.24
8	9	0.672342	AGTTTCGTCCGCACAGTAGT	59.328	50.000	0.00	0.00	0.00	2.73
9	10	1.060713	CAGTTTCGTCCGCACAGTAG	58.939	55.000	0.00	0.00	0.00	2.57
10	11	0.942410	GCAGTTTCGTCCGCACAGTA	60.942	55.000	0.00	0.00	0.00	2.74
11	12	2.244651	GCAGTTTCGTCCGCACAGT	61.245	57.895	0.00	0.00	0.00	3.55
13	14	2.970324	GGCAGTTTCGTCCGCACA	60.970	61.111	0.00	0.00	0.00	4.57
14	15	2.665185	AGGCAGTTTCGTCCGCAC	60.665	61.111	0.00	0.00	0.00	5.34
15	16	2.664851	CAGGCAGTTTCGTCCGCA	60.665	61.111	0.00	0.00	0.00	5.69
16	17	4.090057	GCAGGCAGTTTCGTCCGC	62.090	66.667	0.00	0.00	0.00	5.54
17	18	2.664851	TGCAGGCAGTTTCGTCCG	60.665	61.111	0.00	0.00	0.00	4.79
18	19	2.946762	GTGCAGGCAGTTTCGTCC	59.053	61.111	0.00	0.00	0.00	4.79
19	20	1.954146	TCGTGCAGGCAGTTTCGTC	60.954	57.895	0.35	0.00	0.00	4.20
20	21	2.108157	TCGTGCAGGCAGTTTCGT	59.892	55.556	0.35	0.00	0.00	3.85
21	22	1.771073	TTGTCGTGCAGGCAGTTTCG	61.771	55.000	0.35	0.00	34.99	3.46
22	23	0.040958	CTTGTCGTGCAGGCAGTTTC	60.041	55.000	0.35	0.00	34.99	2.78
23	24	1.447317	CCTTGTCGTGCAGGCAGTTT	61.447	55.000	0.35	0.00	34.99	2.66
24	25	1.893808	CCTTGTCGTGCAGGCAGTT	60.894	57.895	0.35	0.00	34.99	3.16
25	26	2.281070	CCTTGTCGTGCAGGCAGT	60.281	61.111	0.35	0.00	34.99	4.40
26	27	3.052082	CCCTTGTCGTGCAGGCAG	61.052	66.667	0.35	0.00	34.99	4.85
27	28	4.641645	CCCCTTGTCGTGCAGGCA	62.642	66.667	0.35	0.38	0.00	4.75
28	29	4.329545	TCCCCTTGTCGTGCAGGC	62.330	66.667	0.35	0.00	0.00	4.85
29	30	2.358737	GTCCCCTTGTCGTGCAGG	60.359	66.667	0.00	0.00	0.00	4.85
30	31	2.738521	CGTCCCCTTGTCGTGCAG	60.739	66.667	0.00	0.00	0.00	4.41
31	32	3.228017	TCGTCCCCTTGTCGTGCA	61.228	61.111	0.00	0.00	0.00	4.57
32	33	2.737376	GTCGTCCCCTTGTCGTGC	60.737	66.667	0.00	0.00	0.00	5.34
33	34	2.430244	CGTCGTCCCCTTGTCGTG	60.430	66.667	0.00	0.00	0.00	4.35
34	35	3.677648	CCGTCGTCCCCTTGTCGT	61.678	66.667	0.00	0.00	0.00	4.34
36	37	4.754667	GGCCGTCGTCCCCTTGTC	62.755	72.222	0.00	0.00	0.00	3.18
38	39	3.835790	TTTGGCCGTCGTCCCCTTG	62.836	63.158	0.00	0.00	0.00	3.61
39	40	2.814913	GATTTGGCCGTCGTCCCCTT	62.815	60.000	0.00	0.00	0.00	3.95
40	41	3.325201	GATTTGGCCGTCGTCCCCT	62.325	63.158	0.00	0.00	0.00	4.79
41	42	2.822701	GATTTGGCCGTCGTCCCC	60.823	66.667	0.00	0.00	0.00	4.81
42	43	2.822701	GGATTTGGCCGTCGTCCC	60.823	66.667	0.00	0.00	0.00	4.46
43	44	2.046700	TGGATTTGGCCGTCGTCC	60.047	61.111	0.00	3.65	0.00	4.79
44	45	2.750888	GCTGGATTTGGCCGTCGTC	61.751	63.158	0.00	0.00	0.00	4.20
45	46	2.746277	GCTGGATTTGGCCGTCGT	60.746	61.111	0.00	0.00	0.00	4.34
46	47	3.508840	GGCTGGATTTGGCCGTCG	61.509	66.667	0.00	0.00	38.91	5.12
50	51	2.044946	AGACGGCTGGATTTGGCC	60.045	61.111	0.00	0.00	44.43	5.36
51	52	3.056313	GCAGACGGCTGGATTTGGC	62.056	63.158	22.33	0.00	42.53	4.52
52	53	3.190878	GCAGACGGCTGGATTTGG	58.809	61.111	22.33	0.00	42.53	3.28
61	62	2.484264	ACATTAAAGTGAAGCAGACGGC	59.516	45.455	0.00	0.00	45.30	5.68
62	63	4.024048	ACAACATTAAAGTGAAGCAGACGG	60.024	41.667	0.00	0.00	0.00	4.79
63	64	4.905866	CACAACATTAAAGTGAAGCAGACG	59.094	41.667	0.00	0.00	35.33	4.18
64	65	4.676924	GCACAACATTAAAGTGAAGCAGAC	59.323	41.667	0.00	0.00	35.33	3.51
65	66	4.337836	TGCACAACATTAAAGTGAAGCAGA	59.662	37.500	0.00	0.00	35.33	4.26
66	67	4.609947	TGCACAACATTAAAGTGAAGCAG	58.390	39.130	0.00	0.00	35.33	4.24
67	68	4.645762	TGCACAACATTAAAGTGAAGCA	57.354	36.364	0.00	3.51	35.33	3.91
68	69	4.386652	CCATGCACAACATTAAAGTGAAGC	59.613	41.667	0.00	1.34	36.64	3.86
69	70	5.630680	GTCCATGCACAACATTAAAGTGAAG	59.369	40.000	0.00	0.00	36.64	3.02
70	71	5.527951	GTCCATGCACAACATTAAAGTGAA	58.472	37.500	0.00	0.00	36.64	3.18
71	72	4.320129	CGTCCATGCACAACATTAAAGTGA	60.320	41.667	0.00	0.00	36.64	3.41
72	73	3.913763	CGTCCATGCACAACATTAAAGTG	59.086	43.478	0.00	0.00	36.64	3.16
73	74	3.818210	TCGTCCATGCACAACATTAAAGT	59.182	39.130	0.00	0.00	36.64	2.66
74	75	4.083324	ACTCGTCCATGCACAACATTAAAG	60.083	41.667	0.00	0.00	36.64	1.85
75	76	3.818210	ACTCGTCCATGCACAACATTAAA	59.182	39.130	0.00	0.00	36.64	1.52
76	77	3.407698	ACTCGTCCATGCACAACATTAA	58.592	40.909	0.00	0.00	36.64	1.40
77	78	3.052455	ACTCGTCCATGCACAACATTA	57.948	42.857	0.00	0.00	36.64	1.90
78	79	1.896220	ACTCGTCCATGCACAACATT	58.104	45.000	0.00	0.00	36.64	2.71
79	80	1.536766	CAACTCGTCCATGCACAACAT	59.463	47.619	0.00	0.00	40.66	2.71
80	81	0.943673	CAACTCGTCCATGCACAACA	59.056	50.000	0.00	0.00	0.00	3.33
81	82	1.225855	TCAACTCGTCCATGCACAAC	58.774	50.000	0.00	0.00	0.00	3.32
82	83	2.076100	GATCAACTCGTCCATGCACAA	58.924	47.619	0.00	0.00	0.00	3.33
83	84	1.276138	AGATCAACTCGTCCATGCACA	59.724	47.619	0.00	0.00	0.00	4.57
84	85	2.015736	AGATCAACTCGTCCATGCAC	57.984	50.000	0.00	0.00	0.00	4.57
85	86	2.479560	CGTAGATCAACTCGTCCATGCA	60.480	50.000	0.00	0.00	0.00	3.96
86	87	2.120232	CGTAGATCAACTCGTCCATGC	58.880	52.381	0.00	0.00	0.00	4.06
87	88	3.422417	ACGTAGATCAACTCGTCCATG	57.578	47.619	0.00	0.00	30.96	3.66
88	89	3.192844	ACAACGTAGATCAACTCGTCCAT	59.807	43.478	0.00	0.00	33.75	3.41
89	90	2.555325	ACAACGTAGATCAACTCGTCCA	59.445	45.455	0.00	0.00	33.75	4.02
90	91	3.169733	GACAACGTAGATCAACTCGTCC	58.830	50.000	0.00	0.00	33.75	4.79
91	92	2.839026	CGACAACGTAGATCAACTCGTC	59.161	50.000	0.00	0.00	33.75	4.20
92	93	2.847901	CGACAACGTAGATCAACTCGT	58.152	47.619	0.00	0.00	35.30	4.18
111	112	0.433492	GTGTGGACGATTCGTGAACG	59.567	55.000	17.75	0.00	41.37	3.95
112	113	1.191647	GTGTGTGGACGATTCGTGAAC	59.808	52.381	17.75	14.16	41.37	3.18
113	114	1.493772	GTGTGTGGACGATTCGTGAA	58.506	50.000	17.75	1.09	41.37	3.18
114	115	0.319211	GGTGTGTGGACGATTCGTGA	60.319	55.000	17.75	0.00	41.37	4.35
115	116	0.598942	TGGTGTGTGGACGATTCGTG	60.599	55.000	17.75	0.00	41.37	4.35
116	117	0.320374	ATGGTGTGTGGACGATTCGT	59.680	50.000	12.25	12.25	45.10	3.85
117	118	0.999406	GATGGTGTGTGGACGATTCG	59.001	55.000	4.14	4.14	0.00	3.34
118	119	0.999406	CGATGGTGTGTGGACGATTC	59.001	55.000	0.00	0.00	0.00	2.52
119	120	0.320374	ACGATGGTGTGTGGACGATT	59.680	50.000	0.00	0.00	0.00	3.34
120	121	0.389817	CACGATGGTGTGTGGACGAT	60.390	55.000	0.00	0.00	39.38	3.73
121	122	1.006688	CACGATGGTGTGTGGACGA	60.007	57.895	0.00	0.00	39.38	4.20
122	123	3.549467	CACGATGGTGTGTGGACG	58.451	61.111	0.00	0.00	39.38	4.79
131	132	1.536072	CGCTGCTATACACACGATGGT	60.536	52.381	0.00	0.00	0.00	3.55
132	133	1.131771	CGCTGCTATACACACGATGG	58.868	55.000	0.00	0.00	0.00	3.51
133	134	0.504384	GCGCTGCTATACACACGATG	59.496	55.000	0.00	0.00	0.00	3.84
134	135	0.385751	AGCGCTGCTATACACACGAT	59.614	50.000	10.39	0.00	36.99	3.73
135	136	0.525455	CAGCGCTGCTATACACACGA	60.525	55.000	26.68	0.00	36.40	4.35
136	137	1.920051	CAGCGCTGCTATACACACG	59.080	57.895	26.68	0.00	36.40	4.49
147	148	0.391130	TGTAACCTTAGGCAGCGCTG	60.391	55.000	32.83	32.83	0.00	5.18
148	149	0.541863	ATGTAACCTTAGGCAGCGCT	59.458	50.000	2.64	2.64	0.00	5.92
149	150	1.865340	GTATGTAACCTTAGGCAGCGC	59.135	52.381	0.00	0.00	0.00	5.92
150	151	2.124903	CGTATGTAACCTTAGGCAGCG	58.875	52.381	0.00	0.00	0.00	5.18
151	152	2.159000	ACCGTATGTAACCTTAGGCAGC	60.159	50.000	0.00	0.00	0.00	5.25
152	153	3.814005	ACCGTATGTAACCTTAGGCAG	57.186	47.619	0.00	0.00	0.00	4.85
153	154	4.223477	AGAAACCGTATGTAACCTTAGGCA	59.777	41.667	0.00	0.00	0.00	4.75
154	155	4.763073	AGAAACCGTATGTAACCTTAGGC	58.237	43.478	0.00	0.00	0.00	3.93
155	156	8.632679	TGTATAGAAACCGTATGTAACCTTAGG	58.367	37.037	0.00	0.00	0.00	2.69
156	157	9.674824	CTGTATAGAAACCGTATGTAACCTTAG	57.325	37.037	0.00	0.00	0.00	2.18
157	158	9.189156	ACTGTATAGAAACCGTATGTAACCTTA	57.811	33.333	0.00	0.00	0.00	2.69
158	159	8.071177	ACTGTATAGAAACCGTATGTAACCTT	57.929	34.615	0.00	0.00	0.00	3.50
159	160	7.651027	ACTGTATAGAAACCGTATGTAACCT	57.349	36.000	0.00	0.00	0.00	3.50
160	161	8.405531	TGTACTGTATAGAAACCGTATGTAACC	58.594	37.037	0.00	0.00	0.00	2.85
161	162	9.787532	TTGTACTGTATAGAAACCGTATGTAAC	57.212	33.333	0.00	0.00	0.00	2.50
162	163	9.787532	GTTGTACTGTATAGAAACCGTATGTAA	57.212	33.333	0.00	0.00	0.00	2.41
163	164	8.955388	TGTTGTACTGTATAGAAACCGTATGTA	58.045	33.333	0.00	0.00	0.00	2.29
164	165	7.829725	TGTTGTACTGTATAGAAACCGTATGT	58.170	34.615	0.00	0.00	0.00	2.29
165	166	8.589629	GTTGTTGTACTGTATAGAAACCGTATG	58.410	37.037	0.00	0.00	0.00	2.39
166	167	8.526147	AGTTGTTGTACTGTATAGAAACCGTAT	58.474	33.333	0.00	0.00	0.00	3.06
167	168	7.885297	AGTTGTTGTACTGTATAGAAACCGTA	58.115	34.615	0.00	0.00	0.00	4.02
168	169	6.752168	AGTTGTTGTACTGTATAGAAACCGT	58.248	36.000	0.00	0.00	0.00	4.83
169	170	8.239314	TCTAGTTGTTGTACTGTATAGAAACCG	58.761	37.037	0.00	0.00	0.00	4.44
170	171	9.351570	GTCTAGTTGTTGTACTGTATAGAAACC	57.648	37.037	0.00	0.00	0.00	3.27
173	174	8.954350	GGAGTCTAGTTGTTGTACTGTATAGAA	58.046	37.037	0.00	0.00	0.00	2.10
174	175	7.279536	CGGAGTCTAGTTGTTGTACTGTATAGA	59.720	40.741	0.00	0.00	0.00	1.98
175	176	7.279536	TCGGAGTCTAGTTGTTGTACTGTATAG	59.720	40.741	0.00	0.00	0.00	1.31
176	177	7.105588	TCGGAGTCTAGTTGTTGTACTGTATA	58.894	38.462	0.00	0.00	0.00	1.47
177	178	5.942236	TCGGAGTCTAGTTGTTGTACTGTAT	59.058	40.000	0.00	0.00	0.00	2.29
178	179	5.308014	TCGGAGTCTAGTTGTTGTACTGTA	58.692	41.667	0.00	0.00	0.00	2.74
179	180	4.139786	TCGGAGTCTAGTTGTTGTACTGT	58.860	43.478	0.00	0.00	0.00	3.55
180	181	4.761235	TCGGAGTCTAGTTGTTGTACTG	57.239	45.455	0.00	0.00	0.00	2.74
181	182	4.158025	CCATCGGAGTCTAGTTGTTGTACT	59.842	45.833	0.00	0.00	0.00	2.73
182	183	4.157289	TCCATCGGAGTCTAGTTGTTGTAC	59.843	45.833	0.00	0.00	0.00	2.90
183	184	4.338012	TCCATCGGAGTCTAGTTGTTGTA	58.662	43.478	0.00	0.00	0.00	2.41
184	185	3.162666	TCCATCGGAGTCTAGTTGTTGT	58.837	45.455	0.00	0.00	0.00	3.32
185	186	3.868757	TCCATCGGAGTCTAGTTGTTG	57.131	47.619	0.00	0.00	0.00	3.33
186	187	5.012328	GATTCCATCGGAGTCTAGTTGTT	57.988	43.478	0.00	0.00	35.86	2.83
187	188	4.657436	GATTCCATCGGAGTCTAGTTGT	57.343	45.455	0.00	0.00	35.86	3.32
200	201	2.186076	GTCTGTCACGACGATTCCATC	58.814	52.381	0.00	0.00	0.00	3.51
201	202	1.544246	TGTCTGTCACGACGATTCCAT	59.456	47.619	0.00	0.00	36.71	3.41
202	203	0.955905	TGTCTGTCACGACGATTCCA	59.044	50.000	0.00	0.00	36.71	3.53
203	204	1.337821	GTGTCTGTCACGACGATTCC	58.662	55.000	0.00	0.00	37.31	3.01
212	213	1.139058	AGTGAAGGGTGTGTCTGTCAC	59.861	52.381	0.00	0.00	46.31	3.67
213	214	1.496060	AGTGAAGGGTGTGTCTGTCA	58.504	50.000	0.00	0.00	0.00	3.58
214	215	2.622064	AAGTGAAGGGTGTGTCTGTC	57.378	50.000	0.00	0.00	0.00	3.51
215	216	3.054361	AGAAAAGTGAAGGGTGTGTCTGT	60.054	43.478	0.00	0.00	0.00	3.41
216	217	3.545703	AGAAAAGTGAAGGGTGTGTCTG	58.454	45.455	0.00	0.00	0.00	3.51
217	218	3.456277	AGAGAAAAGTGAAGGGTGTGTCT	59.544	43.478	0.00	0.00	0.00	3.41
218	219	3.809905	AGAGAAAAGTGAAGGGTGTGTC	58.190	45.455	0.00	0.00	0.00	3.67
219	220	3.741388	CGAGAGAAAAGTGAAGGGTGTGT	60.741	47.826	0.00	0.00	0.00	3.72
220	221	2.802816	CGAGAGAAAAGTGAAGGGTGTG	59.197	50.000	0.00	0.00	0.00	3.82
221	222	2.434702	ACGAGAGAAAAGTGAAGGGTGT	59.565	45.455	0.00	0.00	0.00	4.16
222	223	3.060602	GACGAGAGAAAAGTGAAGGGTG	58.939	50.000	0.00	0.00	0.00	4.61
223	224	2.037381	GGACGAGAGAAAAGTGAAGGGT	59.963	50.000	0.00	0.00	0.00	4.34
224	225	2.300437	AGGACGAGAGAAAAGTGAAGGG	59.700	50.000	0.00	0.00	0.00	3.95
225	226	3.669251	AGGACGAGAGAAAAGTGAAGG	57.331	47.619	0.00	0.00	0.00	3.46
226	227	3.670991	CGAAGGACGAGAGAAAAGTGAAG	59.329	47.826	0.00	0.00	45.77	3.02
227	228	3.639538	CGAAGGACGAGAGAAAAGTGAA	58.360	45.455	0.00	0.00	45.77	3.18
228	229	2.607282	GCGAAGGACGAGAGAAAAGTGA	60.607	50.000	0.00	0.00	45.77	3.41
229	230	1.721926	GCGAAGGACGAGAGAAAAGTG	59.278	52.381	0.00	0.00	45.77	3.16
230	231	1.340248	TGCGAAGGACGAGAGAAAAGT	59.660	47.619	0.00	0.00	45.77	2.66
231	232	2.065993	TGCGAAGGACGAGAGAAAAG	57.934	50.000	0.00	0.00	45.77	2.27
232	233	2.519377	TTGCGAAGGACGAGAGAAAA	57.481	45.000	0.00	0.00	45.77	2.29
233	234	2.404215	CTTTGCGAAGGACGAGAGAAA	58.596	47.619	5.72	0.00	45.77	2.52
234	235	2.065993	CTTTGCGAAGGACGAGAGAA	57.934	50.000	5.72	0.00	45.77	2.87
235	236	3.794690	CTTTGCGAAGGACGAGAGA	57.205	52.632	5.72	0.00	45.77	3.10
244	245	2.391389	GGTCGAGGCCTTTGCGAAG	61.391	63.158	15.85	6.73	38.85	3.79
245	246	2.358247	GGTCGAGGCCTTTGCGAA	60.358	61.111	15.85	0.00	38.85	4.70
246	247	3.296709	GAGGTCGAGGCCTTTGCGA	62.297	63.158	6.77	9.20	39.34	5.10
247	248	2.815647	GAGGTCGAGGCCTTTGCG	60.816	66.667	6.77	6.30	39.34	4.85
248	249	2.436824	GGAGGTCGAGGCCTTTGC	60.437	66.667	6.77	0.00	39.34	3.68
249	250	2.125512	CGGAGGTCGAGGCCTTTG	60.126	66.667	6.77	2.45	42.43	2.77
250	251	4.083862	GCGGAGGTCGAGGCCTTT	62.084	66.667	6.77	0.00	42.43	3.11
255	256	2.439701	TAGTGGCGGAGGTCGAGG	60.440	66.667	0.00	0.00	42.43	4.63
256	257	2.482333	CCTAGTGGCGGAGGTCGAG	61.482	68.421	0.00	0.00	42.43	4.04
257	258	2.439701	CCTAGTGGCGGAGGTCGA	60.440	66.667	0.00	0.00	42.43	4.20
258	259	1.033746	TAACCTAGTGGCGGAGGTCG	61.034	60.000	5.38	0.00	45.64	4.79
259	260	0.459078	GTAACCTAGTGGCGGAGGTC	59.541	60.000	5.38	0.00	45.64	3.85
261	262	1.120530	ATGTAACCTAGTGGCGGAGG	58.879	55.000	0.00	0.00	38.92	4.30
262	263	2.287427	CGTATGTAACCTAGTGGCGGAG	60.287	54.545	0.00	0.00	36.63	4.63
263	264	1.677576	CGTATGTAACCTAGTGGCGGA	59.322	52.381	0.00	0.00	36.63	5.54
264	265	1.677576	TCGTATGTAACCTAGTGGCGG	59.322	52.381	0.00	0.00	36.63	6.13
265	266	3.004002	TCATCGTATGTAACCTAGTGGCG	59.996	47.826	0.00	0.00	36.63	5.69
266	267	4.037684	AGTCATCGTATGTAACCTAGTGGC	59.962	45.833	0.00	0.00	36.63	5.01
267	268	5.769484	AGTCATCGTATGTAACCTAGTGG	57.231	43.478	0.00	0.00	39.83	4.00
268	269	7.255569	TCAAAGTCATCGTATGTAACCTAGTG	58.744	38.462	0.00	0.00	0.00	2.74
269	270	7.400599	TCAAAGTCATCGTATGTAACCTAGT	57.599	36.000	0.00	0.00	0.00	2.57
270	271	8.873215	AATCAAAGTCATCGTATGTAACCTAG	57.127	34.615	0.00	0.00	0.00	3.02
271	272	9.661563	AAAATCAAAGTCATCGTATGTAACCTA	57.338	29.630	0.00	0.00	0.00	3.08
272	273	8.561738	AAAATCAAAGTCATCGTATGTAACCT	57.438	30.769	0.00	0.00	0.00	3.50
273	274	7.908601	GGAAAATCAAAGTCATCGTATGTAACC	59.091	37.037	0.00	0.00	0.00	2.85
274	275	8.665685	AGGAAAATCAAAGTCATCGTATGTAAC	58.334	33.333	0.00	0.00	0.00	2.50
275	276	8.786826	AGGAAAATCAAAGTCATCGTATGTAA	57.213	30.769	0.00	0.00	0.00	2.41
276	277	8.258007	AGAGGAAAATCAAAGTCATCGTATGTA	58.742	33.333	0.00	0.00	0.00	2.29
277	278	7.106239	AGAGGAAAATCAAAGTCATCGTATGT	58.894	34.615	0.00	0.00	0.00	2.29
278	279	7.493971	AGAGAGGAAAATCAAAGTCATCGTATG	59.506	37.037	0.00	0.00	0.00	2.39
279	280	7.560368	AGAGAGGAAAATCAAAGTCATCGTAT	58.440	34.615	0.00	0.00	0.00	3.06
280	281	6.936279	AGAGAGGAAAATCAAAGTCATCGTA	58.064	36.000	0.00	0.00	0.00	3.43
304	305	1.289830	TCCGGGGACATTTCTCTCCTA	59.710	52.381	0.00	0.00	0.00	2.94
305	306	0.042731	TCCGGGGACATTTCTCTCCT	59.957	55.000	0.00	0.00	0.00	3.69
310	311	1.490910	GATTCCTCCGGGGACATTTCT	59.509	52.381	0.37	0.00	45.03	2.52
314	315	2.808206	GCGATTCCTCCGGGGACAT	61.808	63.158	0.37	4.77	45.03	3.06
324	325	0.615331	TCTTTGGCAGAGCGATTCCT	59.385	50.000	0.00	0.00	0.00	3.36
335	336	2.884639	GGAGCACTTTTACTCTTTGGCA	59.115	45.455	0.00	0.00	33.29	4.92
339	340	2.808543	CGCAGGAGCACTTTTACTCTTT	59.191	45.455	0.00	0.00	42.27	2.52
345	346	4.789977	TGCGCAGGAGCACTTTTA	57.210	50.000	5.66	0.00	42.92	1.52
360	361	2.609244	GCCATCTCGAGATAGGACTTGC	60.609	54.545	31.32	20.35	32.63	4.01
366	367	1.214062	GCCGCCATCTCGAGATAGG	59.786	63.158	26.87	26.71	32.63	2.57
368	369	0.823769	AGTGCCGCCATCTCGAGATA	60.824	55.000	26.87	8.40	32.63	1.98
370	371	2.755876	AGTGCCGCCATCTCGAGA	60.756	61.111	19.19	19.19	0.00	4.04
378	379	2.031012	CAAGACAGAGTGCCGCCA	59.969	61.111	0.00	0.00	0.00	5.69
442	443	2.037144	GCCTTCGGTACCCATCTTCTA	58.963	52.381	6.25	0.00	0.00	2.10
453	454	3.399181	CCTGGCCAGCCTTCGGTA	61.399	66.667	28.39	0.00	36.94	4.02
554	579	5.336372	CCCCAAATGAGCTGAAATTTTACGA	60.336	40.000	0.00	0.00	0.00	3.43
577	602	5.244851	TCAGAGATACCTATTCTGCACATCC	59.755	44.000	0.00	0.00	38.52	3.51
606	631	7.869429	CAGCTAAAATTCTGGATGTGAAAAAGT	59.131	33.333	0.00	0.00	0.00	2.66
615	640	3.490419	GCCAGCAGCTAAAATTCTGGATG	60.490	47.826	10.45	0.00	45.31	3.51
616	641	2.692041	GCCAGCAGCTAAAATTCTGGAT	59.308	45.455	10.45	0.00	45.31	3.41
626	651	0.107017	GGGAGATTGCCAGCAGCTAA	60.107	55.000	0.00	0.00	44.23	3.09
634	659	7.619302	AGATTTACATAAAAAGGGAGATTGCCA	59.381	33.333	0.00	0.00	0.00	4.92
681	706	6.996509	ACATTTTGTGGAGCAATTCTAATGT	58.003	32.000	0.00	0.00	38.73	2.71
740	765	4.675510	ACGTCCATTTTGCATCATGATTC	58.324	39.130	5.16	1.09	0.00	2.52
768	793	2.492090	CGAGCTCGGGTGAGAAGG	59.508	66.667	28.40	0.00	45.57	3.46
821	846	2.900273	TGGCGAGCCACTATGGAC	59.100	61.111	13.49	0.00	40.96	4.02
842	868	8.303156	TGATTCATTCAACGATAATGGTTTTGT	58.697	29.630	0.00	0.00	35.48	2.83
844	870	9.703892	TTTGATTCATTCAACGATAATGGTTTT	57.296	25.926	0.00	0.00	43.99	2.43
869	895	0.179018	GTCTGGAGTGTTGCCCTGTT	60.179	55.000	0.00	0.00	0.00	3.16
890	924	3.134458	CCAGATCTAAAGTTCGATGGCC	58.866	50.000	0.00	0.00	0.00	5.36
930	964	1.263356	ATGGTTTCCTCCTTCGACGA	58.737	50.000	0.00	0.00	0.00	4.20
966	1000	0.181587	ACCGTGTGTTGGGTTCATGA	59.818	50.000	0.00	0.00	30.73	3.07
1063	1098	4.722700	GGCGGCCTTTGCTCCAGA	62.723	66.667	12.87	0.00	37.74	3.86
1134	1172	9.436957	GAAAATCAGTCTGTTCAAGTAAGGATA	57.563	33.333	0.00	0.00	0.00	2.59
1171	1209	4.963318	AGGTGATCGGTCATATGATTGT	57.037	40.909	9.02	0.00	36.60	2.71
1215	1253	7.117454	GTGATAATGACGTCGTTCAATAAAGG	58.883	38.462	25.56	0.00	0.00	3.11
1223	1261	3.303495	CACTGGTGATAATGACGTCGTTC	59.697	47.826	25.56	13.77	0.00	3.95
1228	1266	3.262420	GCTTCACTGGTGATAATGACGT	58.738	45.455	4.19	0.00	39.64	4.34
1286	1325	3.218453	CACATGTGGGTTGTTTACAGGA	58.782	45.455	18.51	0.00	31.29	3.86
1321	1362	2.367202	ATTCGCCGATGGTGAGGGT	61.367	57.895	0.00	0.00	43.44	4.34
1331	1373	1.445410	CGACAACCTCATTCGCCGA	60.445	57.895	0.00	0.00	0.00	5.54
1334	1376	2.785258	GCCGACAACCTCATTCGC	59.215	61.111	0.00	0.00	0.00	4.70
1338	1380	1.153369	CATCCGCCGACAACCTCAT	60.153	57.895	0.00	0.00	0.00	2.90
1345	1391	4.467084	GGCTTCCATCCGCCGACA	62.467	66.667	0.00	0.00	36.45	4.35
1406	1452	2.885266	GGAAGAAAGACTGGGTGGTTTC	59.115	50.000	0.00	0.00	0.00	2.78
1410	1456	1.699634	TCAGGAAGAAAGACTGGGTGG	59.300	52.381	0.00	0.00	33.19	4.61
1412	1458	2.977808	TCTCAGGAAGAAAGACTGGGT	58.022	47.619	0.00	0.00	34.38	4.51
1443	1489	3.191669	TGATTTATTCGCACCGTACCAG	58.808	45.455	0.00	0.00	0.00	4.00
1456	1502	9.300681	TCTCAACAAGGACAAAGATGATTTATT	57.699	29.630	0.00	0.00	0.00	1.40
1477	1523	1.444250	GGGTCACCACGTGTCTCAA	59.556	57.895	15.65	0.00	34.79	3.02
1478	1524	2.852180	CGGGTCACCACGTGTCTCA	61.852	63.158	15.65	0.00	36.13	3.27
1495	1541	3.770263	TGGAACTCGTATGTAACCTCG	57.230	47.619	0.00	0.00	0.00	4.63
1530	1576	4.496670	CGATTTCGTCGGAGCCTT	57.503	55.556	0.00	0.00	46.47	4.35
1542	1588	0.318360	TGTGTCTGTCGCGACGATTT	60.318	50.000	31.88	0.00	38.42	2.17
1602	1651	1.452108	GAGCATTTCCGGTGGAGGG	60.452	63.158	0.00	0.00	31.21	4.30
1608	1657	1.078143	GAGGCAGAGCATTTCCGGT	60.078	57.895	0.00	0.00	0.00	5.28
2091	2140	0.113580	CGGAAGGGGAAGGGGAAAAA	59.886	55.000	0.00	0.00	0.00	1.94
2098	2147	0.393944	GGTAAAGCGGAAGGGGAAGG	60.394	60.000	0.00	0.00	0.00	3.46
2099	2148	0.326927	TGGTAAAGCGGAAGGGGAAG	59.673	55.000	0.00	0.00	0.00	3.46
2100	2149	0.037160	GTGGTAAAGCGGAAGGGGAA	59.963	55.000	0.00	0.00	0.00	3.97
2101	2150	1.681076	GTGGTAAAGCGGAAGGGGA	59.319	57.895	0.00	0.00	0.00	4.81
2102	2151	1.743995	CGTGGTAAAGCGGAAGGGG	60.744	63.158	0.00	0.00	0.00	4.79
2117	2166	0.673644	AAGAAGGGGTCGCAATCGTG	60.674	55.000	0.00	0.00	36.96	4.35
2124	2173	0.108089	GAGGAAGAAGAAGGGGTCGC	60.108	60.000	0.00	0.00	0.00	5.19
2154	2203	3.536158	AAATGAACGGACACAACGATG	57.464	42.857	0.00	0.00	34.93	3.84
2178	2227	5.457140	TCGGTTGAATTTTGAAAGAATCGG	58.543	37.500	0.00	0.00	0.00	4.18
2179	2228	6.984740	TTCGGTTGAATTTTGAAAGAATCG	57.015	33.333	0.00	0.00	0.00	3.34
2180	2229	8.125728	TGTTTCGGTTGAATTTTGAAAGAATC	57.874	30.769	0.00	0.00	33.20	2.52
2197	2246	5.063180	TGAACTATCACGTATGTTTCGGT	57.937	39.130	0.00	0.00	0.00	4.69
2198	2247	4.503007	CCTGAACTATCACGTATGTTTCGG	59.497	45.833	0.00	0.00	0.00	4.30
2206	2255	4.272748	CGAGATGACCTGAACTATCACGTA	59.727	45.833	0.00	0.00	31.91	3.57
2208	2257	3.549019	CCGAGATGACCTGAACTATCACG	60.549	52.174	0.00	0.00	34.79	4.35
2215	2264	2.961526	TAAGCCGAGATGACCTGAAC	57.038	50.000	0.00	0.00	0.00	3.18
2218	2267	4.878397	AGAATTTTAAGCCGAGATGACCTG	59.122	41.667	0.00	0.00	0.00	4.00
2277	2326	6.940298	CAGATACCTGAAACTTTTGTAAGGGA	59.060	38.462	0.00	0.00	43.02	4.20
2278	2327	6.715264	ACAGATACCTGAAACTTTTGTAAGGG	59.285	38.462	0.00	0.00	43.02	3.95
2279	2328	7.661847	AGACAGATACCTGAAACTTTTGTAAGG	59.338	37.037	0.00	0.00	43.02	2.69
2281	2330	8.208224	TCAGACAGATACCTGAAACTTTTGTAA	58.792	33.333	0.00	0.00	43.02	2.41
2282	2331	7.732025	TCAGACAGATACCTGAAACTTTTGTA	58.268	34.615	0.00	0.00	43.02	2.41
2283	2332	6.591935	TCAGACAGATACCTGAAACTTTTGT	58.408	36.000	0.00	0.00	43.02	2.83
2320	2369	4.437239	CTGCTGAACCCTTGTACTCATAG	58.563	47.826	0.00	0.00	0.00	2.23
2339	2388	1.332997	GGACAACATATCTGCAGCTGC	59.667	52.381	31.89	31.89	42.50	5.25
2436	2485	4.685169	ACTCACAAGAATATGCGGTTTG	57.315	40.909	0.00	0.00	0.00	2.93
2452	2501	4.814234	TCACACAGTGAAATTGGTACTCAC	59.186	41.667	7.81	4.46	39.78	3.51
2455	2504	6.173339	CCTATCACACAGTGAAATTGGTACT	58.827	40.000	7.81	0.00	45.96	2.73
2504	2553	8.816144	CAGAAATAGAATACAGAGAGAAACAGC	58.184	37.037	0.00	0.00	0.00	4.40
2507	2556	9.308318	GGTCAGAAATAGAATACAGAGAGAAAC	57.692	37.037	0.00	0.00	0.00	2.78
2510	2559	8.470805	GTTGGTCAGAAATAGAATACAGAGAGA	58.529	37.037	0.00	0.00	0.00	3.10
2511	2560	8.253810	TGTTGGTCAGAAATAGAATACAGAGAG	58.746	37.037	0.00	0.00	0.00	3.20
2605	2654	1.472878	CAAGTGCCGACTGCTCTAGTA	59.527	52.381	0.00	0.00	42.76	1.82
2632	2681	5.380043	TGCTTTCCAAACAATTCTCTCTCT	58.620	37.500	0.00	0.00	0.00	3.10
2633	2682	5.695851	TGCTTTCCAAACAATTCTCTCTC	57.304	39.130	0.00	0.00	0.00	3.20
2673	2722	1.710013	ATGAACAAGTGCCGACTACG	58.290	50.000	0.00	0.00	39.43	3.51
2775	2824	4.335647	ACTGGGCAGGAAGGTGCG	62.336	66.667	0.00	0.00	45.00	5.34
2867	2916	0.107643	GGAGCCACCAGAATAGGAGC	59.892	60.000	0.00	0.00	38.79	4.70
2887	2936	6.985188	TCAGAGTAAAACATGCAAGTATCC	57.015	37.500	0.00	0.00	0.00	2.59
2893	2942	7.092079	CCAATCATTCAGAGTAAAACATGCAA	58.908	34.615	0.00	0.00	0.00	4.08
2908	2957	3.220674	TGTGTGACCACCAATCATTCA	57.779	42.857	0.00	0.00	41.09	2.57
3128	3184	3.919804	ACAAACAAATCGGCATCATTTCG	59.080	39.130	0.00	0.00	0.00	3.46
3177	3233	4.307432	ACATAGTCACGAACAGGAAACAG	58.693	43.478	0.00	0.00	0.00	3.16
3179	3235	6.154445	TCTTACATAGTCACGAACAGGAAAC	58.846	40.000	0.00	0.00	0.00	2.78
3232	3288	4.446371	ACCAGCAGCAGTGTTTATATCTC	58.554	43.478	0.00	0.00	0.00	2.75
3242	3298	1.542915	AGCAATTTACCAGCAGCAGTG	59.457	47.619	0.00	0.00	0.00	3.66
3243	3299	1.542915	CAGCAATTTACCAGCAGCAGT	59.457	47.619	0.00	0.00	0.00	4.40
3289	3345	7.981789	TGCATAGAAAGATAACCACTGAACTAG	59.018	37.037	0.00	0.00	0.00	2.57
3291	3347	6.711277	TGCATAGAAAGATAACCACTGAACT	58.289	36.000	0.00	0.00	0.00	3.01
3346	3402	7.542025	GTTTCCTAAAAATGATCATCTGCACT	58.458	34.615	9.06	0.00	0.00	4.40
3347	3403	6.470235	CGTTTCCTAAAAATGATCATCTGCAC	59.530	38.462	9.06	0.00	0.00	4.57
3358	3416	8.582433	TTTTAAGGCTTCGTTTCCTAAAAATG	57.418	30.769	1.30	0.00	31.24	2.32
3359	3417	9.419297	GATTTTAAGGCTTCGTTTCCTAAAAAT	57.581	29.630	1.30	7.13	31.24	1.82
3706	3764	2.138320	ACAGAGAACGCTGTGAACATG	58.862	47.619	10.07	0.00	46.72	3.21
3718	3776	3.542046	GCCAAGGAGGACAGAGAAC	57.458	57.895	0.00	0.00	41.22	3.01
3745	3803	0.253044	TTGTGCCTATGGAGAGTGCC	59.747	55.000	0.00	0.00	0.00	5.01
3792	3850	6.844484	TCTTGACAAGAAGGCTTCTGGAGC	62.844	50.000	33.10	24.01	41.87	4.70
3814	3872	4.301505	TTGGCCGACAATGAGCTC	57.698	55.556	6.82	6.82	33.18	4.09
3838	3896	5.302568	TGTCATCAGGTTTGAGAATTGCTTT	59.697	36.000	0.00	0.00	36.61	3.51
3892	3950	1.607628	GAGGTCATGATCCATGCAAGC	59.392	52.381	1.24	0.00	41.18	4.01
3955	4013	1.884579	AGCTTCAGATGCTGTGTTTGG	59.115	47.619	9.98	0.00	39.56	3.28
3979	4037	2.064762	GAAAGGCCGATGATCGATGAG	58.935	52.381	17.52	0.00	43.74	2.90
4000	4058	1.384191	GACCTGCCCCATGACCTTT	59.616	57.895	0.00	0.00	0.00	3.11
4012	4070	1.153549	GGAGACGACCATGACCTGC	60.154	63.158	0.00	0.00	0.00	4.85
4033	4091	1.153881	GCGGTTGTAGAGGACGGTC	60.154	63.158	0.00	0.00	0.00	4.79
4085	4143	3.433615	GCATACATTATCTGAACTCCGCC	59.566	47.826	0.00	0.00	0.00	6.13
4177	4235	2.484264	AGCCGAGAAACAAAGCACATAC	59.516	45.455	0.00	0.00	0.00	2.39
4247	4305	4.154347	GGGGCAGAGGCTCGACAG	62.154	72.222	9.22	1.98	43.36	3.51
4327	4385	0.744281	CAACCCCAAACACACCACTC	59.256	55.000	0.00	0.00	0.00	3.51
4387	4445	1.488393	AGAATACCCAGAGGCAAGCTC	59.512	52.381	0.00	0.00	36.11	4.09
4518	4576	7.642082	TCAGTACCTAACAAGATCTACTTCC	57.358	40.000	0.00	0.00	36.61	3.46
4548	4606	5.354513	GGGCTAGAAGAAATTCCTGTACAAC	59.645	44.000	0.00	0.00	0.00	3.32
4549	4607	5.013704	TGGGCTAGAAGAAATTCCTGTACAA	59.986	40.000	0.00	0.00	0.00	2.41
4627	4685	4.515567	TGTGTGTGTTTTGTGTACACTGAA	59.484	37.500	25.60	17.18	44.76	3.02
4641	4699	5.596836	ATTTTGGAATCTGTGTGTGTGTT	57.403	34.783	0.00	0.00	0.00	3.32
4672	4758	1.470098	CTACACCTTGCAGTTGGATGC	59.530	52.381	9.06	0.00	46.68	3.91
4702	4788	8.648693	ACTACCCAATGAAAGTATATACTGACC	58.351	37.037	16.11	8.84	36.50	4.02
4729	4815	2.802667	CGGCGTGAGTAGCATGTGC	61.803	63.158	0.00	0.00	42.49	4.57
4730	4816	1.413767	GACGGCGTGAGTAGCATGTG	61.414	60.000	21.19	0.00	35.87	3.21
4732	4818	1.878522	GGACGGCGTGAGTAGCATG	60.879	63.158	21.19	0.00	36.08	4.06
4742	4828	1.161843	CACTTATTTTGGGACGGCGT	58.838	50.000	14.65	14.65	0.00	5.68
4744	4830	1.129811	CGACACTTATTTTGGGACGGC	59.870	52.381	0.00	0.00	0.00	5.68
4801	4913	6.178507	CGTCTCAAAATAAGTGTCGCTAATG	58.821	40.000	0.00	0.00	0.00	1.90
4804	4916	4.171005	CCGTCTCAAAATAAGTGTCGCTA	58.829	43.478	0.00	0.00	0.00	4.26
4964	5096	7.012515	TGTTACCTAGTGTGTACCACATTTTTG	59.987	37.037	14.39	2.90	46.32	2.44
4984	5171	7.715249	TCATTGTTATTGAGCTAGGATGTTACC	59.285	37.037	0.00	0.00	0.00	2.85
4995	5182	8.918116	TGAGTAGTCTATCATTGTTATTGAGCT	58.082	33.333	0.00	0.00	0.00	4.09
5065	5253	6.072452	GCTGAGCATACTTAACTTTGGAGTTT	60.072	38.462	0.00	0.00	43.48	2.66
5069	5258	5.165961	AGCTGAGCATACTTAACTTTGGA	57.834	39.130	7.39	0.00	0.00	3.53
5088	5277	8.559536	CGACACCATTATCACATAATTTAAGCT	58.440	33.333	0.00	0.00	33.34	3.74
5098	5287	2.170397	TGCTCCGACACCATTATCACAT	59.830	45.455	0.00	0.00	0.00	3.21
5099	5288	1.552792	TGCTCCGACACCATTATCACA	59.447	47.619	0.00	0.00	0.00	3.58
5113	5302	1.238439	ACCAAATCAACACTGCTCCG	58.762	50.000	0.00	0.00	0.00	4.63
5130	5319	8.444715	TCACACGTTTCACATATAAACATAACC	58.555	33.333	0.00	0.00	36.78	2.85
5134	5323	8.015087	CACTTCACACGTTTCACATATAAACAT	58.985	33.333	0.00	0.00	36.78	2.71
5135	5324	7.011576	ACACTTCACACGTTTCACATATAAACA	59.988	33.333	0.00	0.00	36.78	2.83
5150	5340	0.308684	AATGCAGCACACTTCACACG	59.691	50.000	0.00	0.00	0.00	4.49
5171	5361	5.078949	CAAATATGATGGCCTTATCACCCA	58.921	41.667	7.87	0.00	39.68	4.51
5186	5376	2.816672	TGCACACCGCTTTCAAATATGA	59.183	40.909	0.00	0.00	43.06	2.15
5204	5394	3.636300	AGTTGTTTGGCTATTGTTCTGCA	59.364	39.130	0.00	0.00	0.00	4.41
5230	5431	9.654663	GTGTTTCAGGAGTAAGTAGATGTAAAT	57.345	33.333	0.00	0.00	0.00	1.40
5240	5441	3.311596	GCGTTTGTGTTTCAGGAGTAAGT	59.688	43.478	0.00	0.00	0.00	2.24
5243	5444	2.907634	TGCGTTTGTGTTTCAGGAGTA	58.092	42.857	0.00	0.00	0.00	2.59
5245	5446	2.653890	CATGCGTTTGTGTTTCAGGAG	58.346	47.619	0.00	0.00	0.00	3.69
5246	5447	1.268999	GCATGCGTTTGTGTTTCAGGA	60.269	47.619	0.00	0.00	0.00	3.86
5247	5448	1.130955	GCATGCGTTTGTGTTTCAGG	58.869	50.000	0.00	0.00	0.00	3.86
5249	5450	1.923204	GTTGCATGCGTTTGTGTTTCA	59.077	42.857	14.09	0.00	0.00	2.69
5250	5451	1.257675	GGTTGCATGCGTTTGTGTTTC	59.742	47.619	14.09	0.00	0.00	2.78
5252	5453	0.174389	TGGTTGCATGCGTTTGTGTT	59.826	45.000	14.09	0.00	0.00	3.32
5253	5454	0.174389	TTGGTTGCATGCGTTTGTGT	59.826	45.000	14.09	0.00	0.00	3.72
5256	5457	1.258458	CTGTTTGGTTGCATGCGTTTG	59.742	47.619	14.09	0.00	0.00	2.93
5257	5458	1.569708	CTGTTTGGTTGCATGCGTTT	58.430	45.000	14.09	0.00	0.00	3.60
5258	5459	0.875474	GCTGTTTGGTTGCATGCGTT	60.875	50.000	14.09	0.00	0.00	4.84
5259	5460	1.300080	GCTGTTTGGTTGCATGCGT	60.300	52.632	14.09	0.00	0.00	5.24
5260	5461	2.366584	CGCTGTTTGGTTGCATGCG	61.367	57.895	14.09	0.00	36.19	4.73
5261	5462	2.023223	CCGCTGTTTGGTTGCATGC	61.023	57.895	11.82	11.82	0.00	4.06
5262	5463	0.664166	GACCGCTGTTTGGTTGCATG	60.664	55.000	0.00	0.00	40.63	4.06
5263	5464	1.659794	GACCGCTGTTTGGTTGCAT	59.340	52.632	0.00	0.00	40.63	3.96
5264	5465	2.485795	GGACCGCTGTTTGGTTGCA	61.486	57.895	0.00	0.00	40.63	4.08
5265	5466	1.734388	AAGGACCGCTGTTTGGTTGC	61.734	55.000	0.00	0.00	40.63	4.17
5266	5467	1.600023	TAAGGACCGCTGTTTGGTTG	58.400	50.000	0.00	0.00	40.63	3.77
5272	5473	3.454812	AGGACATATTAAGGACCGCTGTT	59.545	43.478	0.00	0.00	0.00	3.16
5278	5479	8.648693	ACATTACACTAGGACATATTAAGGACC	58.351	37.037	0.00	0.00	0.00	4.46
5294	5495	7.426606	TCATTTGGTAGCCTACATTACACTA	57.573	36.000	3.95	0.00	0.00	2.74
5295	5496	6.308015	TCATTTGGTAGCCTACATTACACT	57.692	37.500	3.95	0.00	0.00	3.55
5296	5497	6.542370	ACATCATTTGGTAGCCTACATTACAC	59.458	38.462	3.95	0.00	0.00	2.90
5297	5498	6.542005	CACATCATTTGGTAGCCTACATTACA	59.458	38.462	3.95	0.00	0.00	2.41
5298	5499	6.513393	GCACATCATTTGGTAGCCTACATTAC	60.513	42.308	3.95	0.00	0.00	1.89
5300	5501	4.339247	GCACATCATTTGGTAGCCTACATT	59.661	41.667	3.95	0.00	0.00	2.71
5301	5502	3.885297	GCACATCATTTGGTAGCCTACAT	59.115	43.478	3.95	0.00	0.00	2.29
5302	5503	3.278574	GCACATCATTTGGTAGCCTACA	58.721	45.455	3.95	0.00	0.00	2.74
5303	5504	3.065371	GTGCACATCATTTGGTAGCCTAC	59.935	47.826	13.17	0.00	0.00	3.18
5305	5506	2.094675	GTGCACATCATTTGGTAGCCT	58.905	47.619	13.17	0.00	0.00	4.58
5306	5507	1.818060	TGTGCACATCATTTGGTAGCC	59.182	47.619	17.42	0.00	0.00	3.93
5307	5508	3.244976	GTTGTGCACATCATTTGGTAGC	58.755	45.455	22.39	0.00	0.00	3.58
5308	5509	4.502171	TGTTGTGCACATCATTTGGTAG	57.498	40.909	23.43	0.00	0.00	3.18
5311	5514	3.915536	TCATGTTGTGCACATCATTTGG	58.084	40.909	31.44	23.01	43.17	3.28
5342	5545	2.506644	TGGATCTGGTTGAGATGATGCA	59.493	45.455	0.00	0.00	41.91	3.96
5347	5550	4.056740	CTCGATTGGATCTGGTTGAGATG	58.943	47.826	0.00	0.00	41.91	2.90
5349	5552	3.099905	ACTCGATTGGATCTGGTTGAGA	58.900	45.455	12.77	0.00	34.25	3.27
5356	5559	4.388165	GCATATGTGACTCGATTGGATCTG	59.612	45.833	4.29	0.00	0.00	2.90
5359	5562	4.341366	TGCATATGTGACTCGATTGGAT	57.659	40.909	4.29	0.00	0.00	3.41
5360	5563	3.817709	TGCATATGTGACTCGATTGGA	57.182	42.857	4.29	0.00	0.00	3.53
5364	5567	2.224378	CCCCTTGCATATGTGACTCGAT	60.224	50.000	4.29	0.00	0.00	3.59
5366	5569	1.586422	CCCCTTGCATATGTGACTCG	58.414	55.000	4.29	0.00	0.00	4.18
5396	5599	1.280998	AGCCGGTTTAGTTACCTGCAT	59.719	47.619	1.90	0.00	46.98	3.96
5400	5603	1.067354	CGTCAGCCGGTTTAGTTACCT	60.067	52.381	1.90	0.00	35.97	3.08
5412	5615	3.414700	GCCACTCAACGTCAGCCG	61.415	66.667	0.00	0.00	44.03	5.52
5441	5909	5.016831	TGTATGAGAGGCTAAGTCAGTCAA	58.983	41.667	0.00	0.00	0.00	3.18
5462	5930	1.748244	CGGATGGAGATTGCATGGTGT	60.748	52.381	0.00	0.00	0.00	4.16
5482	5950	2.606826	AGGGGTCCCGTTGTCCTC	60.607	66.667	0.48	0.00	41.95	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.