Multiple sequence alignment - TraesCS3A01G076000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G076000 chr3A 100.000 2788 0 0 1 2788 47062604 47065391 0.000000e+00 5149.0
1 TraesCS3A01G076000 chr3D 91.168 1404 68 16 978 2364 36835635 36836999 0.000000e+00 1855.0
2 TraesCS3A01G076000 chr3D 85.348 935 78 29 21 945 36834671 36835556 0.000000e+00 913.0
3 TraesCS3A01G076000 chr2B 95.804 429 13 3 2364 2788 692622404 692621977 0.000000e+00 688.0
4 TraesCS3A01G076000 chr6A 94.639 429 14 4 2363 2787 708204 708627 0.000000e+00 656.0
5 TraesCS3A01G076000 chr5A 94.444 432 14 6 2361 2788 438798616 438798191 0.000000e+00 656.0
6 TraesCS3A01G076000 chr4A 94.213 432 16 6 2360 2787 49221064 49220638 0.000000e+00 651.0
7 TraesCS3A01G076000 chr2A 94.186 430 15 5 2363 2788 58985669 58986092 0.000000e+00 647.0
8 TraesCS3A01G076000 chr2A 93.911 427 8 3 2362 2788 43438700 43438292 1.820000e-176 628.0
9 TraesCS3A01G076000 chr4B 93.939 429 20 4 2365 2788 639149276 639148849 0.000000e+00 643.0
10 TraesCS3A01G076000 chr1A 93.882 425 19 4 2365 2787 381110823 381110404 3.920000e-178 634.0
11 TraesCS3A01G076000 chr7A 93.473 429 19 5 2364 2788 172225498 172225075 1.820000e-176 628.0
12 TraesCS3A01G076000 chr3B 79.046 482 59 23 28 504 59332117 59332561 2.720000e-75 292.0
13 TraesCS3A01G076000 chr7B 95.954 173 4 2 2619 2788 126217867 126217695 7.610000e-71 278.0
14 TraesCS3A01G076000 chrUn 92.500 40 3 0 1574 1613 75097104 75097065 1.080000e-04 58.4
15 TraesCS3A01G076000 chr6D 100.000 29 0 0 1585 1613 469751397 469751369 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G076000 chr3A 47062604 47065391 2787 False 5149 5149 100.000 1 2788 1 chr3A.!!$F1 2787
1 TraesCS3A01G076000 chr3D 36834671 36836999 2328 False 1384 1855 88.258 21 2364 2 chr3D.!!$F1 2343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 438 0.178891 AGCCCCCTTCTGAGTTCTGA 60.179 55.0 0.00 0.0 0.0 3.27 F
863 869 0.240945 AAAGAAAATGACAGCGCCCG 59.759 50.0 2.29 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 1526 0.039978 CTAGCCGCATCCTCGTACAG 60.04 60.0 0.0 0.0 0.0 2.74 R
2643 2711 0.040499 GGGGGAGAGTGAGAGTGAGT 59.96 60.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 127 4.273318 ACTAGAATTTTCTCCATGTGGGC 58.727 43.478 0.00 0.00 38.70 5.36
124 128 3.173953 AGAATTTTCTCCATGTGGGCA 57.826 42.857 0.00 0.00 36.21 5.36
126 130 4.646040 TAGAATTTTCTCCATGTGGGCATG 59.354 41.667 0.00 0.96 43.38 4.06
136 140 0.608856 TGTGGGCATGACTTTCGCAT 60.609 50.000 0.00 0.00 0.00 4.73
145 149 0.955428 GACTTTCGCATGTGGCCTGA 60.955 55.000 3.32 0.00 40.31 3.86
196 201 0.898326 ACTTCCACAAAATCCCGGGC 60.898 55.000 18.49 0.00 0.00 6.13
199 204 2.283532 CACAAAATCCCGGGCCCA 60.284 61.111 24.92 1.51 0.00 5.36
201 206 2.037208 CAAAATCCCGGGCCCACT 59.963 61.111 24.92 0.00 0.00 4.00
202 207 2.037208 AAAATCCCGGGCCCACTG 59.963 61.111 24.92 9.45 0.00 3.66
203 208 2.852281 AAAATCCCGGGCCCACTGT 61.852 57.895 24.92 0.94 0.00 3.55
204 209 2.781431 AAAATCCCGGGCCCACTGTC 62.781 60.000 24.92 0.00 0.00 3.51
208 213 4.394712 CCGGGCCCACTGTCACTC 62.395 72.222 24.92 0.00 0.00 3.51
209 214 4.394712 CGGGCCCACTGTCACTCC 62.395 72.222 24.92 0.00 0.00 3.85
210 215 3.249189 GGGCCCACTGTCACTCCA 61.249 66.667 19.95 0.00 0.00 3.86
251 256 3.063084 GTGACGGCGACCTCCTCT 61.063 66.667 16.62 0.00 0.00 3.69
252 257 2.750637 TGACGGCGACCTCCTCTC 60.751 66.667 16.62 0.00 0.00 3.20
253 258 3.519930 GACGGCGACCTCCTCTCC 61.520 72.222 16.62 0.00 0.00 3.71
254 259 3.999297 GACGGCGACCTCCTCTCCT 62.999 68.421 16.62 0.00 0.00 3.69
255 260 3.213402 CGGCGACCTCCTCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
256 261 2.277404 GGCGACCTCCTCTCCTCT 59.723 66.667 0.00 0.00 0.00 3.69
270 275 2.430610 CCTCTCCTTGGAGGCTCGG 61.431 68.421 15.81 4.42 45.07 4.63
310 315 2.046892 CCTCGGGCAACTCACTGG 60.047 66.667 0.00 0.00 0.00 4.00
325 330 5.941788 ACTCACTGGTTTTAGTCCTGATTT 58.058 37.500 0.00 0.00 0.00 2.17
326 331 5.765182 ACTCACTGGTTTTAGTCCTGATTTG 59.235 40.000 0.00 0.00 0.00 2.32
328 333 5.763204 TCACTGGTTTTAGTCCTGATTTGAC 59.237 40.000 0.00 0.00 0.00 3.18
334 339 0.324943 AGTCCTGATTTGACCACCCG 59.675 55.000 0.00 0.00 33.09 5.28
343 348 2.075355 TTGACCACCCGCCATTCCTT 62.075 55.000 0.00 0.00 0.00 3.36
345 350 2.824041 CCACCCGCCATTCCTTCG 60.824 66.667 0.00 0.00 0.00 3.79
346 351 2.046314 CACCCGCCATTCCTTCGT 60.046 61.111 0.00 0.00 0.00 3.85
348 353 0.810031 CACCCGCCATTCCTTCGTAG 60.810 60.000 0.00 0.00 0.00 3.51
356 361 3.430374 GCCATTCCTTCGTAGCTAACTCA 60.430 47.826 0.00 0.00 0.00 3.41
357 362 4.113354 CCATTCCTTCGTAGCTAACTCAC 58.887 47.826 0.00 0.00 0.00 3.51
370 375 1.136329 AACTCACCACCTGCATCCCT 61.136 55.000 0.00 0.00 0.00 4.20
391 396 1.675641 CCTTGCTTTGTAGGCCGCT 60.676 57.895 0.00 0.00 0.00 5.52
431 436 1.623834 CCTAGCCCCCTTCTGAGTTCT 60.624 57.143 0.00 0.00 0.00 3.01
432 437 1.484240 CTAGCCCCCTTCTGAGTTCTG 59.516 57.143 0.00 0.00 0.00 3.02
433 438 0.178891 AGCCCCCTTCTGAGTTCTGA 60.179 55.000 0.00 0.00 0.00 3.27
434 439 0.251634 GCCCCCTTCTGAGTTCTGAG 59.748 60.000 0.00 0.00 0.00 3.35
436 441 1.274712 CCCCTTCTGAGTTCTGAGCT 58.725 55.000 0.00 0.00 0.00 4.09
437 442 1.206849 CCCCTTCTGAGTTCTGAGCTC 59.793 57.143 13.82 13.82 0.00 4.09
440 445 1.206849 CTTCTGAGTTCTGAGCTCCCC 59.793 57.143 17.28 0.00 32.31 4.81
441 446 0.411452 TCTGAGTTCTGAGCTCCCCT 59.589 55.000 17.28 1.02 32.31 4.79
442 447 0.823460 CTGAGTTCTGAGCTCCCCTC 59.177 60.000 17.28 11.07 41.15 4.30
443 448 0.616111 TGAGTTCTGAGCTCCCCTCC 60.616 60.000 17.28 0.00 39.98 4.30
444 449 0.325203 GAGTTCTGAGCTCCCCTCCT 60.325 60.000 12.15 0.24 39.98 3.69
445 450 1.011595 AGTTCTGAGCTCCCCTCCTA 58.988 55.000 12.15 0.00 39.98 2.94
446 451 1.578215 AGTTCTGAGCTCCCCTCCTAT 59.422 52.381 12.15 0.00 39.98 2.57
463 468 0.246360 TATCGCTGATGCATACGGGG 59.754 55.000 14.12 13.35 39.64 5.73
470 475 1.414919 TGATGCATACGGGGAGGTTAC 59.585 52.381 0.00 0.00 0.00 2.50
478 483 1.904537 ACGGGGAGGTTACTTCGAAAT 59.095 47.619 0.00 0.00 0.00 2.17
491 496 0.970937 TCGAAATCTGCGGAGGAGGT 60.971 55.000 3.37 0.00 45.59 3.85
494 499 4.461119 ATCTGCGGAGGAGGTTCA 57.539 55.556 3.37 0.00 33.38 3.18
565 570 1.307097 GAGCCTGCCTGCTTATCTTG 58.693 55.000 0.00 0.00 42.95 3.02
566 571 0.622665 AGCCTGCCTGCTTATCTTGT 59.377 50.000 0.00 0.00 38.85 3.16
567 572 1.005215 AGCCTGCCTGCTTATCTTGTT 59.995 47.619 0.00 0.00 38.85 2.83
568 573 2.239654 AGCCTGCCTGCTTATCTTGTTA 59.760 45.455 0.00 0.00 38.85 2.41
570 575 3.609853 CCTGCCTGCTTATCTTGTTACA 58.390 45.455 0.00 0.00 0.00 2.41
571 576 4.202441 CCTGCCTGCTTATCTTGTTACAT 58.798 43.478 0.00 0.00 0.00 2.29
572 577 4.036027 CCTGCCTGCTTATCTTGTTACATG 59.964 45.833 0.00 0.00 0.00 3.21
575 580 5.584649 TGCCTGCTTATCTTGTTACATGTAC 59.415 40.000 4.68 1.95 0.00 2.90
576 581 5.007724 GCCTGCTTATCTTGTTACATGTACC 59.992 44.000 4.68 0.00 0.00 3.34
577 582 6.112734 CCTGCTTATCTTGTTACATGTACCA 58.887 40.000 4.68 1.16 0.00 3.25
578 583 6.258727 CCTGCTTATCTTGTTACATGTACCAG 59.741 42.308 4.68 2.09 0.00 4.00
579 584 6.707290 TGCTTATCTTGTTACATGTACCAGT 58.293 36.000 4.68 0.00 0.00 4.00
580 585 7.842982 TGCTTATCTTGTTACATGTACCAGTA 58.157 34.615 4.68 0.00 0.00 2.74
581 586 8.482943 TGCTTATCTTGTTACATGTACCAGTAT 58.517 33.333 4.68 5.12 0.00 2.12
582 587 8.765219 GCTTATCTTGTTACATGTACCAGTATG 58.235 37.037 4.68 3.83 0.00 2.39
583 588 9.817809 CTTATCTTGTTACATGTACCAGTATGT 57.182 33.333 4.68 2.53 40.39 2.29
589 594 9.537192 TTGTTACATGTACCAGTATGTATTAGC 57.463 33.333 4.68 0.00 38.96 3.09
590 595 8.920174 TGTTACATGTACCAGTATGTATTAGCT 58.080 33.333 4.68 0.00 38.96 3.32
591 596 9.760077 GTTACATGTACCAGTATGTATTAGCTT 57.240 33.333 4.68 0.00 38.96 3.74
592 597 9.976511 TTACATGTACCAGTATGTATTAGCTTC 57.023 33.333 4.68 0.00 38.96 3.86
593 598 8.018537 ACATGTACCAGTATGTATTAGCTTCA 57.981 34.615 0.00 0.00 35.86 3.02
595 600 7.891498 TGTACCAGTATGTATTAGCTTCAGA 57.109 36.000 0.00 0.00 0.00 3.27
596 601 8.301252 TGTACCAGTATGTATTAGCTTCAGAA 57.699 34.615 0.00 0.00 0.00 3.02
598 603 7.661536 ACCAGTATGTATTAGCTTCAGAAGA 57.338 36.000 14.86 0.00 0.00 2.87
599 604 7.721402 ACCAGTATGTATTAGCTTCAGAAGAG 58.279 38.462 14.86 0.00 0.00 2.85
600 605 7.151308 CCAGTATGTATTAGCTTCAGAAGAGG 58.849 42.308 14.86 0.00 0.00 3.69
601 606 7.201956 CCAGTATGTATTAGCTTCAGAAGAGGT 60.202 40.741 14.86 0.00 0.00 3.85
602 607 7.651304 CAGTATGTATTAGCTTCAGAAGAGGTG 59.349 40.741 14.86 0.00 0.00 4.00
603 608 6.552445 ATGTATTAGCTTCAGAAGAGGTGT 57.448 37.500 14.86 0.00 0.00 4.16
604 609 5.967088 TGTATTAGCTTCAGAAGAGGTGTC 58.033 41.667 14.86 0.86 0.00 3.67
605 610 5.480422 TGTATTAGCTTCAGAAGAGGTGTCA 59.520 40.000 14.86 3.34 0.00 3.58
619 624 1.451207 TGTCAGCCGTGTGTGCTTT 60.451 52.632 0.00 0.00 36.81 3.51
623 628 2.050985 GCCGTGTGTGCTTTCTGC 60.051 61.111 0.00 0.00 43.25 4.26
628 633 2.243957 TGTGTGCTTTCTGCCGACG 61.244 57.895 0.00 0.00 42.00 5.12
704 709 1.379044 CCCACAAGGTGCTCCATCC 60.379 63.158 7.70 0.00 35.89 3.51
719 724 0.826256 CATCCCCATGTGGCCATCAG 60.826 60.000 9.72 0.73 0.00 2.90
736 741 1.833630 TCAGTGTCACATCCCATCTCC 59.166 52.381 5.62 0.00 0.00 3.71
752 757 2.190538 TCTCCTCCTGTCAATGCATGA 58.809 47.619 0.00 0.00 35.05 3.07
764 769 5.627499 TCAATGCATGACTAGTTGGAAAC 57.373 39.130 0.00 0.00 39.34 2.78
765 770 5.316167 TCAATGCATGACTAGTTGGAAACT 58.684 37.500 0.00 0.00 46.77 2.66
809 814 3.449746 TCCCCAGATCCGTTTGAAAAT 57.550 42.857 0.00 0.00 0.00 1.82
857 863 3.624326 TGCGTCCAAAGAAAATGACAG 57.376 42.857 0.00 0.00 0.00 3.51
859 865 2.574322 CGTCCAAAGAAAATGACAGCG 58.426 47.619 0.00 0.00 0.00 5.18
861 867 1.269448 TCCAAAGAAAATGACAGCGCC 59.731 47.619 2.29 0.00 0.00 6.53
862 868 1.669795 CCAAAGAAAATGACAGCGCCC 60.670 52.381 2.29 0.00 0.00 6.13
863 869 0.240945 AAAGAAAATGACAGCGCCCG 59.759 50.000 2.29 0.00 0.00 6.13
864 870 1.586154 AAGAAAATGACAGCGCCCGG 61.586 55.000 2.29 0.00 0.00 5.73
865 871 2.033448 AAAATGACAGCGCCCGGA 59.967 55.556 0.73 0.00 0.00 5.14
866 872 2.253414 GAAAATGACAGCGCCCGGAC 62.253 60.000 0.73 0.00 0.00 4.79
867 873 4.778143 AATGACAGCGCCCGGACC 62.778 66.667 0.73 0.00 0.00 4.46
872 878 4.524318 CAGCGCCCGGACCGTAAT 62.524 66.667 13.94 0.00 0.00 1.89
873 879 4.524318 AGCGCCCGGACCGTAATG 62.524 66.667 13.94 0.61 0.00 1.90
874 880 4.825252 GCGCCCGGACCGTAATGT 62.825 66.667 13.94 0.00 0.00 2.71
875 881 2.584143 CGCCCGGACCGTAATGTC 60.584 66.667 13.94 0.00 34.42 3.06
876 882 2.580276 GCCCGGACCGTAATGTCA 59.420 61.111 13.94 0.00 36.97 3.58
877 883 1.145377 GCCCGGACCGTAATGTCAT 59.855 57.895 13.94 0.00 36.97 3.06
878 884 0.390124 GCCCGGACCGTAATGTCATA 59.610 55.000 13.94 0.00 36.97 2.15
894 900 7.507733 AATGTCATATCTTTCCATCTCTTGC 57.492 36.000 0.00 0.00 0.00 4.01
922 928 1.740025 GATGCCACCTAGTTGCTCAAC 59.260 52.381 4.67 4.67 41.45 3.18
933 939 1.949525 GTTGCTCAACTCACACCACAT 59.050 47.619 5.56 0.00 38.25 3.21
934 940 1.882912 TGCTCAACTCACACCACATC 58.117 50.000 0.00 0.00 0.00 3.06
945 951 2.674852 CACACCACATCCTCTCAATTCG 59.325 50.000 0.00 0.00 0.00 3.34
946 952 2.283298 CACCACATCCTCTCAATTCGG 58.717 52.381 0.00 0.00 0.00 4.30
951 957 0.835941 ATCCTCTCAATTCGGCAGCT 59.164 50.000 0.00 0.00 0.00 4.24
953 959 1.410517 TCCTCTCAATTCGGCAGCTAG 59.589 52.381 0.00 0.00 0.00 3.42
954 960 1.216122 CTCTCAATTCGGCAGCTAGC 58.784 55.000 6.62 6.62 44.65 3.42
986 1038 2.225255 CAGCTCGCAGATAATCTCGAGA 59.775 50.000 19.19 19.19 41.83 4.04
1007 1059 0.762461 AGAGAGGGAGCTATGGTGGC 60.762 60.000 0.00 0.00 0.00 5.01
1008 1060 0.762461 GAGAGGGAGCTATGGTGGCT 60.762 60.000 0.00 0.00 43.26 4.75
1116 1168 1.927174 CGCCGTCAGATAACTTTCCTG 59.073 52.381 0.00 0.00 0.00 3.86
1146 1198 3.372676 GAGCAGCATGAACGCCGTG 62.373 63.158 0.00 0.00 39.69 4.94
1152 1204 2.434884 ATGAACGCCGTGCTGGAG 60.435 61.111 0.00 0.00 44.31 3.86
1190 1242 0.455410 CAGCTCGACCCTCTCAAGAG 59.545 60.000 0.00 0.00 41.71 2.85
1230 1282 1.227639 GCGAGCTCTCCTACGACATA 58.772 55.000 12.85 0.00 0.00 2.29
1365 1432 2.467826 GCAGCTCAAGATCCGCACC 61.468 63.158 0.00 0.00 0.00 5.01
1366 1433 1.078918 CAGCTCAAGATCCGCACCA 60.079 57.895 0.00 0.00 0.00 4.17
1381 1448 3.586961 CCATCGAGGCGAGCGAGA 61.587 66.667 0.00 0.00 41.49 4.04
1398 1465 1.068250 GAGGCGCAGGAGGTATGAC 59.932 63.158 10.83 0.00 0.00 3.06
1413 1480 0.678048 ATGACTTTCTTGAGCCGGCC 60.678 55.000 26.15 15.80 0.00 6.13
1415 1482 2.034066 CTTTCTTGAGCCGGCCCA 59.966 61.111 26.15 17.08 0.00 5.36
1419 1486 3.710722 CTTGAGCCGGCCCAGAGT 61.711 66.667 26.15 1.92 0.00 3.24
1433 1500 1.074752 CAGAGTTCTGGCGCTTCTTC 58.925 55.000 7.64 0.00 40.20 2.87
1547 1615 3.204526 CAAGGAGAAGGAGCATGATGAC 58.795 50.000 0.00 0.00 0.00 3.06
1552 1620 2.435069 AGAAGGAGCATGATGACCTCAG 59.565 50.000 10.91 0.00 37.28 3.35
1568 1636 0.888736 TCAGGGTGTTGCCGATTGTG 60.889 55.000 0.00 0.00 38.44 3.33
1571 1639 1.901464 GGTGTTGCCGATTGTGGGT 60.901 57.895 0.00 0.00 0.00 4.51
1574 1642 1.175983 TGTTGCCGATTGTGGGTTCC 61.176 55.000 0.00 0.00 0.00 3.62
1628 1696 5.277828 CCAAGTGTACTGTCAGTTAAAAGGC 60.278 44.000 11.54 0.00 30.93 4.35
1642 1710 2.531522 AAAGGCCAATTTCAGTGCAC 57.468 45.000 9.40 9.40 0.00 4.57
1643 1711 1.412079 AAGGCCAATTTCAGTGCACA 58.588 45.000 21.04 0.00 0.00 4.57
1647 1715 1.269936 GCCAATTTCAGTGCACAGCTT 60.270 47.619 21.04 2.81 0.00 3.74
1676 1744 2.420022 GGTGTCTCGGAATCCAAACATG 59.580 50.000 0.00 0.00 0.00 3.21
1703 1771 2.323939 TTTTACGGCAAATGCTCACG 57.676 45.000 5.25 3.34 41.70 4.35
1706 1774 0.739462 TACGGCAAATGCTCACGGAG 60.739 55.000 5.25 0.00 41.70 4.63
1736 1804 1.742880 CGGTGGTGCACTGGATGAG 60.743 63.158 17.98 0.00 37.12 2.90
1800 1868 1.443852 AAGGTAAACCCGGTAACCCA 58.556 50.000 15.43 0.00 38.74 4.51
1809 1877 2.043992 CCCGGTAACCCACTCATATCA 58.956 52.381 0.00 0.00 0.00 2.15
1817 1885 7.227156 GGTAACCCACTCATATCATGATTTCT 58.773 38.462 14.65 0.00 38.85 2.52
1818 1886 7.721399 GGTAACCCACTCATATCATGATTTCTT 59.279 37.037 14.65 0.00 38.85 2.52
1819 1887 9.778741 GTAACCCACTCATATCATGATTTCTTA 57.221 33.333 14.65 0.00 38.85 2.10
1821 1889 9.872684 AACCCACTCATATCATGATTTCTTATT 57.127 29.630 14.65 0.00 38.85 1.40
1865 1933 8.279800 GGTCTTTTTAACATTTTGGTAATGCAC 58.720 33.333 0.00 0.00 28.48 4.57
1882 1950 9.973246 GGTAATGCACATAGTAATGAATATTCG 57.027 33.333 10.80 0.00 36.54 3.34
1958 2026 8.831715 AAGTTTGAAGCATATTTTTAGGGTTG 57.168 30.769 0.00 0.00 0.00 3.77
1959 2027 8.189119 AGTTTGAAGCATATTTTTAGGGTTGA 57.811 30.769 0.00 0.00 0.00 3.18
1960 2028 8.646900 AGTTTGAAGCATATTTTTAGGGTTGAA 58.353 29.630 0.00 0.00 0.00 2.69
1987 2055 8.147058 TGAAAAGTTCAAAGCAATAATAGGCAA 58.853 29.630 0.00 0.00 36.59 4.52
1988 2056 7.889589 AAAGTTCAAAGCAATAATAGGCAAC 57.110 32.000 0.00 0.00 0.00 4.17
2080 2148 1.597742 TCAGGCTTGCTCTGTTCAAC 58.402 50.000 0.00 0.00 34.15 3.18
2081 2149 1.134128 TCAGGCTTGCTCTGTTCAACA 60.134 47.619 0.00 0.00 34.15 3.33
2090 2158 4.858935 TGCTCTGTTCAACAAATAAGTGC 58.141 39.130 0.00 0.00 0.00 4.40
2132 2200 3.017656 GCGTAACGTTGCCATCGCA 62.018 57.895 11.99 0.00 45.49 5.10
2147 2215 1.516161 TCGCATCATATTGCTCAGGC 58.484 50.000 0.00 0.00 40.54 4.85
2187 2255 9.768215 TTTATCAAATGGAGTCCCTTAATTCTT 57.232 29.630 6.74 0.00 0.00 2.52
2189 2257 6.187682 TCAAATGGAGTCCCTTAATTCTTCC 58.812 40.000 6.74 0.00 0.00 3.46
2199 2267 4.434520 CCTTAATTCTTCCGACTCCAGAC 58.565 47.826 0.00 0.00 0.00 3.51
2207 2275 0.460311 CCGACTCCAGACGGCTATTT 59.540 55.000 4.57 0.00 45.01 1.40
2266 2334 4.323104 CCCTCACCTGGAAGAAGTTTCTAG 60.323 50.000 0.00 0.00 36.28 2.43
2295 2363 2.114616 TGGCAAAATGTGGTGGACTTT 58.885 42.857 0.00 0.00 0.00 2.66
2309 2377 4.097892 GGTGGACTTTCATTGGCGATTATT 59.902 41.667 0.00 0.00 0.00 1.40
2315 2383 6.795399 ACTTTCATTGGCGATTATTACCTTG 58.205 36.000 0.00 0.00 0.00 3.61
2369 2437 4.739495 TGGAACAGGGTGGAGTGA 57.261 55.556 0.00 0.00 0.00 3.41
2370 2438 2.938301 TGGAACAGGGTGGAGTGAA 58.062 52.632 0.00 0.00 0.00 3.18
2371 2439 1.444933 TGGAACAGGGTGGAGTGAAT 58.555 50.000 0.00 0.00 0.00 2.57
2372 2440 2.626785 TGGAACAGGGTGGAGTGAATA 58.373 47.619 0.00 0.00 0.00 1.75
2373 2441 2.571653 TGGAACAGGGTGGAGTGAATAG 59.428 50.000 0.00 0.00 0.00 1.73
2374 2442 2.633488 GAACAGGGTGGAGTGAATAGC 58.367 52.381 0.00 0.00 0.00 2.97
2375 2443 1.656587 ACAGGGTGGAGTGAATAGCA 58.343 50.000 0.00 0.00 0.00 3.49
2376 2444 1.985159 ACAGGGTGGAGTGAATAGCAA 59.015 47.619 0.00 0.00 0.00 3.91
2377 2445 2.375174 ACAGGGTGGAGTGAATAGCAAA 59.625 45.455 0.00 0.00 0.00 3.68
2378 2446 3.181434 ACAGGGTGGAGTGAATAGCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
2379 2447 3.826157 CAGGGTGGAGTGAATAGCAAAAA 59.174 43.478 0.00 0.00 0.00 1.94
2397 2465 3.428413 AAAACTACCACATTACGGGCT 57.572 42.857 0.00 0.00 0.00 5.19
2398 2466 4.556592 AAAACTACCACATTACGGGCTA 57.443 40.909 0.00 0.00 0.00 3.93
2399 2467 4.765813 AAACTACCACATTACGGGCTAT 57.234 40.909 0.00 0.00 0.00 2.97
2400 2468 4.332428 AACTACCACATTACGGGCTATC 57.668 45.455 0.00 0.00 0.00 2.08
2401 2469 2.295349 ACTACCACATTACGGGCTATCG 59.705 50.000 0.00 0.00 0.00 2.92
2402 2470 1.117150 ACCACATTACGGGCTATCGT 58.883 50.000 5.74 5.74 45.88 3.73
2403 2471 1.483415 ACCACATTACGGGCTATCGTT 59.517 47.619 5.74 0.00 43.59 3.85
2404 2472 2.132762 CCACATTACGGGCTATCGTTC 58.867 52.381 5.74 0.00 43.59 3.95
2405 2473 2.132762 CACATTACGGGCTATCGTTCC 58.867 52.381 5.74 0.00 43.59 3.62
2407 2475 1.001048 CATTACGGGCTATCGTTCCGA 60.001 52.381 8.02 0.00 45.96 4.55
2408 2476 1.102154 TTACGGGCTATCGTTCCGAA 58.898 50.000 8.02 0.00 45.96 4.30
2409 2477 1.102154 TACGGGCTATCGTTCCGAAA 58.898 50.000 8.02 0.00 45.96 3.46
2410 2478 0.247185 ACGGGCTATCGTTCCGAAAA 59.753 50.000 8.02 0.00 45.96 2.29
2411 2479 1.338011 ACGGGCTATCGTTCCGAAAAA 60.338 47.619 8.02 0.00 45.96 1.94
2412 2480 1.061566 CGGGCTATCGTTCCGAAAAAC 59.938 52.381 0.00 0.00 45.96 2.43
2413 2481 2.353323 GGGCTATCGTTCCGAAAAACT 58.647 47.619 0.00 0.00 39.99 2.66
2414 2482 3.524541 GGGCTATCGTTCCGAAAAACTA 58.475 45.455 0.00 0.00 39.99 2.24
2415 2483 3.308053 GGGCTATCGTTCCGAAAAACTAC 59.692 47.826 0.00 0.00 39.99 2.73
2416 2484 3.308053 GGCTATCGTTCCGAAAAACTACC 59.692 47.826 0.00 0.00 39.99 3.18
2417 2485 3.000376 GCTATCGTTCCGAAAAACTACCG 60.000 47.826 0.00 0.00 39.99 4.02
2418 2486 1.139163 TCGTTCCGAAAAACTACCGC 58.861 50.000 0.00 0.00 31.06 5.68
2419 2487 1.142474 CGTTCCGAAAAACTACCGCT 58.858 50.000 0.00 0.00 0.00 5.52
2420 2488 1.528161 CGTTCCGAAAAACTACCGCTT 59.472 47.619 0.00 0.00 0.00 4.68
2421 2489 2.032636 CGTTCCGAAAAACTACCGCTTT 60.033 45.455 0.00 0.00 0.00 3.51
2422 2490 3.546616 CGTTCCGAAAAACTACCGCTTTT 60.547 43.478 0.00 0.00 0.00 2.27
2423 2491 4.353737 GTTCCGAAAAACTACCGCTTTTT 58.646 39.130 0.00 0.00 34.27 1.94
2458 2526 4.385358 AAACTACCACAAAAGTTGCTGG 57.615 40.909 7.58 7.58 36.12 4.85
2459 2527 1.681264 ACTACCACAAAAGTTGCTGGC 59.319 47.619 8.55 0.00 36.16 4.85
2460 2528 1.956477 CTACCACAAAAGTTGCTGGCT 59.044 47.619 8.55 2.37 36.16 4.75
2461 2529 0.461135 ACCACAAAAGTTGCTGGCTG 59.539 50.000 8.55 0.00 36.16 4.85
2462 2530 0.461135 CCACAAAAGTTGCTGGCTGT 59.539 50.000 0.00 0.00 0.00 4.40
2463 2531 1.134729 CCACAAAAGTTGCTGGCTGTT 60.135 47.619 0.00 0.00 0.00 3.16
2464 2532 2.195922 CACAAAAGTTGCTGGCTGTTC 58.804 47.619 0.00 0.00 0.00 3.18
2465 2533 1.136891 ACAAAAGTTGCTGGCTGTTCC 59.863 47.619 0.00 0.00 0.00 3.62
2466 2534 1.136695 CAAAAGTTGCTGGCTGTTCCA 59.863 47.619 0.00 0.00 44.18 3.53
2467 2535 1.484038 AAAGTTGCTGGCTGTTCCAA 58.516 45.000 0.00 0.00 46.01 3.53
2468 2536 1.484038 AAGTTGCTGGCTGTTCCAAA 58.516 45.000 0.00 0.00 46.01 3.28
2469 2537 1.484038 AGTTGCTGGCTGTTCCAAAA 58.516 45.000 0.00 0.00 46.01 2.44
2470 2538 1.830477 AGTTGCTGGCTGTTCCAAAAA 59.170 42.857 0.00 0.00 46.01 1.94
2484 2552 4.688770 AAAAACCCAAGTGGCCGA 57.311 50.000 0.00 0.00 37.83 5.54
2485 2553 2.903404 AAAAACCCAAGTGGCCGAA 58.097 47.368 0.00 0.00 37.83 4.30
2486 2554 0.462375 AAAAACCCAAGTGGCCGAAC 59.538 50.000 0.00 0.00 37.83 3.95
2487 2555 1.730451 AAAACCCAAGTGGCCGAACG 61.730 55.000 0.00 0.00 37.83 3.95
2488 2556 4.636435 ACCCAAGTGGCCGAACGG 62.636 66.667 9.00 9.00 37.83 4.44
2489 2557 4.636435 CCCAAGTGGCCGAACGGT 62.636 66.667 14.63 0.00 37.65 4.83
2490 2558 2.593436 CCAAGTGGCCGAACGGTT 60.593 61.111 14.63 0.00 37.65 4.44
2491 2559 1.301874 CCAAGTGGCCGAACGGTTA 60.302 57.895 14.63 1.69 37.65 2.85
2492 2560 0.885596 CCAAGTGGCCGAACGGTTAA 60.886 55.000 14.63 0.00 37.65 2.01
2493 2561 0.515564 CAAGTGGCCGAACGGTTAAG 59.484 55.000 14.63 0.00 37.65 1.85
2494 2562 0.107268 AAGTGGCCGAACGGTTAAGT 59.893 50.000 14.63 1.57 37.65 2.24
2495 2563 0.107268 AGTGGCCGAACGGTTAAGTT 59.893 50.000 14.63 0.00 37.65 2.66
2496 2564 0.946528 GTGGCCGAACGGTTAAGTTT 59.053 50.000 14.63 0.00 37.65 2.66
2497 2565 1.334556 GTGGCCGAACGGTTAAGTTTT 59.665 47.619 14.63 0.00 37.65 2.43
2498 2566 2.547634 GTGGCCGAACGGTTAAGTTTTA 59.452 45.455 14.63 0.00 37.65 1.52
2499 2567 3.003171 GTGGCCGAACGGTTAAGTTTTAA 59.997 43.478 14.63 0.00 37.65 1.52
2500 2568 3.003171 TGGCCGAACGGTTAAGTTTTAAC 59.997 43.478 14.63 3.67 37.65 2.01
2501 2569 3.250762 GGCCGAACGGTTAAGTTTTAACT 59.749 43.478 14.63 0.00 38.08 2.24
2502 2570 4.213674 GCCGAACGGTTAAGTTTTAACTG 58.786 43.478 14.63 15.45 37.14 3.16
2503 2571 4.775664 CCGAACGGTTAAGTTTTAACTGG 58.224 43.478 19.23 11.19 39.66 4.00
2504 2572 4.319694 CCGAACGGTTAAGTTTTAACTGGG 60.320 45.833 19.23 10.65 39.66 4.45
2505 2573 4.319694 CGAACGGTTAAGTTTTAACTGGGG 60.320 45.833 19.23 8.45 39.66 4.96
2506 2574 4.169059 ACGGTTAAGTTTTAACTGGGGT 57.831 40.909 19.23 8.13 39.66 4.95
2507 2575 4.535781 ACGGTTAAGTTTTAACTGGGGTT 58.464 39.130 19.23 2.14 39.66 4.11
2508 2576 5.689835 ACGGTTAAGTTTTAACTGGGGTTA 58.310 37.500 19.23 0.00 39.66 2.85
2509 2577 6.306199 ACGGTTAAGTTTTAACTGGGGTTAT 58.694 36.000 19.23 1.31 39.66 1.89
2510 2578 6.207221 ACGGTTAAGTTTTAACTGGGGTTATG 59.793 38.462 19.23 0.00 39.66 1.90
2511 2579 6.430616 CGGTTAAGTTTTAACTGGGGTTATGA 59.569 38.462 11.07 0.00 39.66 2.15
2512 2580 7.573656 CGGTTAAGTTTTAACTGGGGTTATGAC 60.574 40.741 11.07 0.00 39.66 3.06
2513 2581 7.231115 GGTTAAGTTTTAACTGGGGTTATGACA 59.769 37.037 10.49 0.00 39.66 3.58
2514 2582 8.799367 GTTAAGTTTTAACTGGGGTTATGACAT 58.201 33.333 0.00 0.00 39.66 3.06
2515 2583 6.834168 AGTTTTAACTGGGGTTATGACATG 57.166 37.500 0.00 0.00 37.98 3.21
2516 2584 6.311735 AGTTTTAACTGGGGTTATGACATGT 58.688 36.000 0.00 0.00 37.98 3.21
2517 2585 6.208599 AGTTTTAACTGGGGTTATGACATGTG 59.791 38.462 1.15 0.00 37.98 3.21
2518 2586 2.806945 ACTGGGGTTATGACATGTGG 57.193 50.000 1.15 0.00 0.00 4.17
2519 2587 1.284785 ACTGGGGTTATGACATGTGGG 59.715 52.381 1.15 0.00 0.00 4.61
2520 2588 0.628522 TGGGGTTATGACATGTGGGG 59.371 55.000 1.15 0.00 0.00 4.96
2521 2589 0.755327 GGGGTTATGACATGTGGGGC 60.755 60.000 1.15 0.00 0.00 5.80
2522 2590 0.755327 GGGTTATGACATGTGGGGCC 60.755 60.000 1.15 0.00 0.00 5.80
2523 2591 0.755327 GGTTATGACATGTGGGGCCC 60.755 60.000 18.17 18.17 0.00 5.80
2524 2592 1.101049 GTTATGACATGTGGGGCCCG 61.101 60.000 19.83 5.76 0.00 6.13
2525 2593 2.902423 TTATGACATGTGGGGCCCGC 62.902 60.000 29.44 29.44 34.12 6.13
2543 2611 3.650369 CCGTCAGGGTTTTGTCGG 58.350 61.111 0.00 0.00 41.77 4.79
2544 2612 2.613506 CCGTCAGGGTTTTGTCGGC 61.614 63.158 0.00 0.00 41.40 5.54
2545 2613 2.613506 CGTCAGGGTTTTGTCGGCC 61.614 63.158 0.00 0.00 0.00 6.13
2546 2614 1.527380 GTCAGGGTTTTGTCGGCCA 60.527 57.895 2.24 0.00 0.00 5.36
2547 2615 1.527380 TCAGGGTTTTGTCGGCCAC 60.527 57.895 2.24 0.25 0.00 5.01
2548 2616 1.826054 CAGGGTTTTGTCGGCCACA 60.826 57.895 2.24 3.42 0.00 4.17
2549 2617 1.528309 AGGGTTTTGTCGGCCACAG 60.528 57.895 2.24 0.00 35.97 3.66
2550 2618 1.826487 GGGTTTTGTCGGCCACAGT 60.826 57.895 2.24 0.00 35.97 3.55
2551 2619 1.358759 GGTTTTGTCGGCCACAGTG 59.641 57.895 2.24 0.00 35.97 3.66
2552 2620 1.299089 GTTTTGTCGGCCACAGTGC 60.299 57.895 2.24 0.00 35.97 4.40
2553 2621 1.453015 TTTTGTCGGCCACAGTGCT 60.453 52.632 2.24 0.00 35.97 4.40
2554 2622 1.444119 TTTTGTCGGCCACAGTGCTC 61.444 55.000 2.24 0.00 35.97 4.26
2555 2623 2.601194 TTTGTCGGCCACAGTGCTCA 62.601 55.000 2.24 0.00 35.97 4.26
2556 2624 3.044305 GTCGGCCACAGTGCTCAC 61.044 66.667 2.24 0.00 0.00 3.51
2557 2625 4.662961 TCGGCCACAGTGCTCACG 62.663 66.667 2.24 0.00 36.20 4.35
2580 2648 4.807039 CGGGTGACGGCCGTTAGG 62.807 72.222 34.65 16.35 39.42 2.69
2581 2649 4.462280 GGGTGACGGCCGTTAGGG 62.462 72.222 34.65 0.76 38.20 3.53
2608 2676 4.323477 CGCCCCGACCAGGTCAAA 62.323 66.667 20.13 0.00 38.74 2.69
2609 2677 2.114411 GCCCCGACCAGGTCAAAA 59.886 61.111 20.13 0.00 38.74 2.44
2610 2678 2.265904 GCCCCGACCAGGTCAAAAC 61.266 63.158 20.13 2.26 38.74 2.43
2611 2679 1.964373 CCCCGACCAGGTCAAAACG 60.964 63.158 20.13 5.52 38.74 3.60
2612 2680 1.964373 CCCGACCAGGTCAAAACGG 60.964 63.158 20.13 14.42 38.74 4.44
2613 2681 2.613506 CCGACCAGGTCAAAACGGC 61.614 63.158 20.13 0.00 34.36 5.68
2614 2682 2.613506 CGACCAGGTCAAAACGGCC 61.614 63.158 20.13 0.00 32.09 6.13
2615 2683 2.593436 ACCAGGTCAAAACGGCCG 60.593 61.111 26.86 26.86 0.00 6.13
2616 2684 4.038080 CCAGGTCAAAACGGCCGC 62.038 66.667 28.58 7.47 0.00 6.53
2617 2685 4.038080 CAGGTCAAAACGGCCGCC 62.038 66.667 28.58 17.68 0.00 6.13
2630 2698 3.775654 CCGCCCCCTCACTCTGTC 61.776 72.222 0.00 0.00 0.00 3.51
2631 2699 2.681778 CGCCCCCTCACTCTGTCT 60.682 66.667 0.00 0.00 0.00 3.41
2632 2700 2.716017 CGCCCCCTCACTCTGTCTC 61.716 68.421 0.00 0.00 0.00 3.36
2633 2701 2.363172 GCCCCCTCACTCTGTCTCC 61.363 68.421 0.00 0.00 0.00 3.71
2634 2702 1.687493 CCCCCTCACTCTGTCTCCC 60.687 68.421 0.00 0.00 0.00 4.30
2635 2703 1.390125 CCCCTCACTCTGTCTCCCT 59.610 63.158 0.00 0.00 0.00 4.20
2636 2704 0.686112 CCCCTCACTCTGTCTCCCTC 60.686 65.000 0.00 0.00 0.00 4.30
2637 2705 1.034838 CCCTCACTCTGTCTCCCTCG 61.035 65.000 0.00 0.00 0.00 4.63
2638 2706 1.662438 CCTCACTCTGTCTCCCTCGC 61.662 65.000 0.00 0.00 0.00 5.03
2639 2707 1.987704 CTCACTCTGTCTCCCTCGCG 61.988 65.000 0.00 0.00 0.00 5.87
2640 2708 3.444805 ACTCTGTCTCCCTCGCGC 61.445 66.667 0.00 0.00 0.00 6.86
2641 2709 3.137459 CTCTGTCTCCCTCGCGCT 61.137 66.667 5.56 0.00 0.00 5.92
2642 2710 3.119709 CTCTGTCTCCCTCGCGCTC 62.120 68.421 5.56 0.00 0.00 5.03
2643 2711 3.443925 CTGTCTCCCTCGCGCTCA 61.444 66.667 5.56 0.00 0.00 4.26
2644 2712 3.691744 CTGTCTCCCTCGCGCTCAC 62.692 68.421 5.56 0.00 0.00 3.51
2645 2713 3.444805 GTCTCCCTCGCGCTCACT 61.445 66.667 5.56 0.00 0.00 3.41
2646 2714 3.134792 TCTCCCTCGCGCTCACTC 61.135 66.667 5.56 0.00 0.00 3.51
2647 2715 3.443925 CTCCCTCGCGCTCACTCA 61.444 66.667 5.56 0.00 0.00 3.41
2648 2716 3.691744 CTCCCTCGCGCTCACTCAC 62.692 68.421 5.56 0.00 0.00 3.51
2649 2717 3.753434 CCCTCGCGCTCACTCACT 61.753 66.667 5.56 0.00 0.00 3.41
2650 2718 2.202544 CCTCGCGCTCACTCACTC 60.203 66.667 5.56 0.00 0.00 3.51
2651 2719 2.695759 CCTCGCGCTCACTCACTCT 61.696 63.158 5.56 0.00 0.00 3.24
2652 2720 1.226267 CTCGCGCTCACTCACTCTC 60.226 63.158 5.56 0.00 0.00 3.20
2653 2721 1.916697 CTCGCGCTCACTCACTCTCA 61.917 60.000 5.56 0.00 0.00 3.27
2654 2722 1.799519 CGCGCTCACTCACTCTCAC 60.800 63.158 5.56 0.00 0.00 3.51
2655 2723 1.583986 GCGCTCACTCACTCTCACT 59.416 57.895 0.00 0.00 0.00 3.41
2656 2724 0.455972 GCGCTCACTCACTCTCACTC 60.456 60.000 0.00 0.00 0.00 3.51
2657 2725 1.164411 CGCTCACTCACTCTCACTCT 58.836 55.000 0.00 0.00 0.00 3.24
2658 2726 1.130373 CGCTCACTCACTCTCACTCTC 59.870 57.143 0.00 0.00 0.00 3.20
2659 2727 1.472480 GCTCACTCACTCTCACTCTCC 59.528 57.143 0.00 0.00 0.00 3.71
2660 2728 2.091541 CTCACTCACTCTCACTCTCCC 58.908 57.143 0.00 0.00 0.00 4.30
2661 2729 1.181786 CACTCACTCTCACTCTCCCC 58.818 60.000 0.00 0.00 0.00 4.81
2662 2730 0.040499 ACTCACTCTCACTCTCCCCC 59.960 60.000 0.00 0.00 0.00 5.40
2676 2744 4.042251 CCCCCTCACTCTCACTCC 57.958 66.667 0.00 0.00 0.00 3.85
2677 2745 1.687493 CCCCCTCACTCTCACTCCC 60.687 68.421 0.00 0.00 0.00 4.30
2678 2746 1.687493 CCCCTCACTCTCACTCCCC 60.687 68.421 0.00 0.00 0.00 4.81
2679 2747 1.687493 CCCTCACTCTCACTCCCCC 60.687 68.421 0.00 0.00 0.00 5.40
2693 2761 2.269241 CCCCCTCGCTCTGTTTCC 59.731 66.667 0.00 0.00 0.00 3.13
2694 2762 2.269241 CCCCTCGCTCTGTTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
2695 2763 2.269241 CCCTCGCTCTGTTTCCCC 59.731 66.667 0.00 0.00 0.00 4.81
2696 2764 2.294078 CCCTCGCTCTGTTTCCCCT 61.294 63.158 0.00 0.00 0.00 4.79
2697 2765 1.078848 CCTCGCTCTGTTTCCCCTG 60.079 63.158 0.00 0.00 0.00 4.45
2698 2766 1.078848 CTCGCTCTGTTTCCCCTGG 60.079 63.158 0.00 0.00 0.00 4.45
2699 2767 2.747855 CGCTCTGTTTCCCCTGGC 60.748 66.667 0.00 0.00 0.00 4.85
2700 2768 2.361737 GCTCTGTTTCCCCTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
2701 2769 2.045926 CTCTGTTTCCCCTGGCCG 60.046 66.667 0.00 0.00 0.00 6.13
2702 2770 2.528127 TCTGTTTCCCCTGGCCGA 60.528 61.111 0.00 0.00 0.00 5.54
2703 2771 2.045926 CTGTTTCCCCTGGCCGAG 60.046 66.667 0.00 0.00 0.00 4.63
2704 2772 4.344865 TGTTTCCCCTGGCCGAGC 62.345 66.667 0.00 0.00 0.00 5.03
2705 2773 4.035102 GTTTCCCCTGGCCGAGCT 62.035 66.667 0.00 0.00 0.00 4.09
2706 2774 3.717294 TTTCCCCTGGCCGAGCTC 61.717 66.667 2.73 2.73 0.00 4.09
2707 2775 4.722535 TTCCCCTGGCCGAGCTCT 62.723 66.667 12.85 0.00 0.00 4.09
2711 2779 3.160047 CCTGGCCGAGCTCTCCAT 61.160 66.667 20.43 0.00 0.00 3.41
2712 2780 2.420890 CTGGCCGAGCTCTCCATC 59.579 66.667 20.43 4.31 0.00 3.51
2713 2781 3.496875 CTGGCCGAGCTCTCCATCG 62.497 68.421 20.43 9.78 38.65 3.84
2714 2782 3.532155 GGCCGAGCTCTCCATCGT 61.532 66.667 12.85 0.00 37.23 3.73
2715 2783 2.026879 GCCGAGCTCTCCATCGTC 59.973 66.667 12.85 0.00 37.23 4.20
2716 2784 2.329690 CCGAGCTCTCCATCGTCG 59.670 66.667 12.85 0.00 37.23 5.12
2717 2785 2.352915 CGAGCTCTCCATCGTCGC 60.353 66.667 12.85 0.00 34.30 5.19
2718 2786 2.026879 GAGCTCTCCATCGTCGCC 59.973 66.667 6.43 0.00 0.00 5.54
2719 2787 3.815569 GAGCTCTCCATCGTCGCCG 62.816 68.421 6.43 0.00 0.00 6.46
2729 2797 4.778415 CGTCGCCGACCACCTCAG 62.778 72.222 12.26 0.00 35.63 3.35
2730 2798 3.681835 GTCGCCGACCACCTCAGT 61.682 66.667 5.81 0.00 0.00 3.41
2731 2799 2.915659 TCGCCGACCACCTCAGTT 60.916 61.111 0.00 0.00 0.00 3.16
2732 2800 2.432628 CGCCGACCACCTCAGTTC 60.433 66.667 0.00 0.00 0.00 3.01
2733 2801 2.047179 GCCGACCACCTCAGTTCC 60.047 66.667 0.00 0.00 0.00 3.62
2734 2802 2.584391 GCCGACCACCTCAGTTCCT 61.584 63.158 0.00 0.00 0.00 3.36
2735 2803 1.592223 CCGACCACCTCAGTTCCTC 59.408 63.158 0.00 0.00 0.00 3.71
2736 2804 1.213013 CGACCACCTCAGTTCCTCG 59.787 63.158 0.00 0.00 0.00 4.63
2737 2805 1.524863 CGACCACCTCAGTTCCTCGT 61.525 60.000 0.00 0.00 0.00 4.18
2738 2806 0.244178 GACCACCTCAGTTCCTCGTC 59.756 60.000 0.00 0.00 0.00 4.20
2739 2807 1.213013 CCACCTCAGTTCCTCGTCG 59.787 63.158 0.00 0.00 0.00 5.12
2740 2808 1.444553 CACCTCAGTTCCTCGTCGC 60.445 63.158 0.00 0.00 0.00 5.19
2741 2809 2.182030 CCTCAGTTCCTCGTCGCC 59.818 66.667 0.00 0.00 0.00 5.54
2742 2810 2.202492 CTCAGTTCCTCGTCGCCG 60.202 66.667 0.00 0.00 0.00 6.46
2743 2811 3.685214 CTCAGTTCCTCGTCGCCGG 62.685 68.421 0.00 0.00 33.95 6.13
2765 2833 3.008835 CAGGATGCCTTCTTGGAATGA 57.991 47.619 0.00 0.00 33.02 2.57
2766 2834 3.563223 CAGGATGCCTTCTTGGAATGAT 58.437 45.455 0.00 0.00 33.02 2.45
2767 2835 3.318275 CAGGATGCCTTCTTGGAATGATG 59.682 47.826 0.00 0.00 33.02 3.07
2768 2836 2.626743 GGATGCCTTCTTGGAATGATGG 59.373 50.000 0.00 0.00 33.02 3.51
2769 2837 2.148446 TGCCTTCTTGGAATGATGGG 57.852 50.000 0.00 0.00 36.28 4.00
2770 2838 1.342275 TGCCTTCTTGGAATGATGGGG 60.342 52.381 0.00 0.00 36.28 4.96
2771 2839 1.063717 GCCTTCTTGGAATGATGGGGA 60.064 52.381 0.00 0.00 36.28 4.81
2772 2840 2.425392 GCCTTCTTGGAATGATGGGGAT 60.425 50.000 0.00 0.00 36.28 3.85
2773 2841 3.228453 CCTTCTTGGAATGATGGGGATG 58.772 50.000 0.00 0.00 38.35 3.51
2774 2842 3.117398 CCTTCTTGGAATGATGGGGATGA 60.117 47.826 0.00 0.00 38.35 2.92
2775 2843 3.870538 TCTTGGAATGATGGGGATGAG 57.129 47.619 0.00 0.00 0.00 2.90
2776 2844 3.396565 TCTTGGAATGATGGGGATGAGA 58.603 45.455 0.00 0.00 0.00 3.27
2777 2845 3.393609 TCTTGGAATGATGGGGATGAGAG 59.606 47.826 0.00 0.00 0.00 3.20
2778 2846 1.422781 TGGAATGATGGGGATGAGAGC 59.577 52.381 0.00 0.00 0.00 4.09
2779 2847 1.704070 GGAATGATGGGGATGAGAGCT 59.296 52.381 0.00 0.00 0.00 4.09
2780 2848 2.290197 GGAATGATGGGGATGAGAGCTC 60.290 54.545 5.27 5.27 0.00 4.09
2781 2849 1.360185 ATGATGGGGATGAGAGCTCC 58.640 55.000 10.93 2.40 0.00 4.70
2782 2850 1.117749 TGATGGGGATGAGAGCTCCG 61.118 60.000 10.93 0.00 33.29 4.63
2783 2851 0.829602 GATGGGGATGAGAGCTCCGA 60.830 60.000 10.93 0.00 33.29 4.55
2784 2852 1.118356 ATGGGGATGAGAGCTCCGAC 61.118 60.000 10.93 3.07 33.29 4.79
2785 2853 2.725008 GGGATGAGAGCTCCGACG 59.275 66.667 10.93 0.00 33.29 5.12
2786 2854 1.824329 GGGATGAGAGCTCCGACGA 60.824 63.158 10.93 0.00 33.29 4.20
2787 2855 1.357334 GGATGAGAGCTCCGACGAC 59.643 63.158 10.93 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.935366 GGATGCTGCTACGCGTCTAC 60.935 60.000 18.63 7.14 43.67 2.59
1 2 1.101635 AGGATGCTGCTACGCGTCTA 61.102 55.000 18.63 0.00 43.67 2.59
2 3 1.949847 AAGGATGCTGCTACGCGTCT 61.950 55.000 18.63 0.00 43.67 4.18
3 4 1.483424 GAAGGATGCTGCTACGCGTC 61.483 60.000 18.63 1.99 43.50 5.19
4 5 1.519455 GAAGGATGCTGCTACGCGT 60.519 57.895 19.17 19.17 0.00 6.01
5 6 0.030773 TAGAAGGATGCTGCTACGCG 59.969 55.000 3.53 3.53 0.00 6.01
6 7 2.225068 TTAGAAGGATGCTGCTACGC 57.775 50.000 0.43 0.00 0.00 4.42
97 99 7.338710 CCCACATGGAGAAAATTCTAGTTCTA 58.661 38.462 0.00 0.00 37.73 2.10
100 102 4.706962 GCCCACATGGAGAAAATTCTAGTT 59.293 41.667 0.00 0.00 37.73 2.24
102 104 4.272489 TGCCCACATGGAGAAAATTCTAG 58.728 43.478 0.00 0.00 37.73 2.43
123 127 0.179156 GGCCACATGCGAAAGTCATG 60.179 55.000 0.00 1.85 45.04 3.07
124 128 0.322816 AGGCCACATGCGAAAGTCAT 60.323 50.000 5.01 0.00 42.61 3.06
126 130 0.955428 TCAGGCCACATGCGAAAGTC 60.955 55.000 5.01 0.00 42.61 3.01
136 140 4.947147 GGCACGGTTCAGGCCACA 62.947 66.667 5.01 0.00 46.92 4.17
181 185 3.074369 GGGCCCGGGATTTTGTGG 61.074 66.667 29.31 0.00 0.00 4.17
196 201 1.071471 GTGGTGGAGTGACAGTGGG 59.929 63.158 0.00 0.00 0.00 4.61
199 204 0.397941 CATGGTGGTGGAGTGACAGT 59.602 55.000 0.00 0.00 0.00 3.55
201 206 0.766288 TCCATGGTGGTGGAGTGACA 60.766 55.000 12.58 0.00 43.20 3.58
202 207 2.066340 TCCATGGTGGTGGAGTGAC 58.934 57.895 12.58 0.00 43.20 3.67
203 208 4.658427 TCCATGGTGGTGGAGTGA 57.342 55.556 12.58 0.00 43.20 3.41
209 214 2.273449 GGAGCCTCCATGGTGGTG 59.727 66.667 29.03 9.73 39.03 4.17
210 215 3.017581 GGGAGCCTCCATGGTGGT 61.018 66.667 29.03 19.00 38.64 4.16
253 258 3.087666 GCCGAGCCTCCAAGGAGAG 62.088 68.421 17.57 8.67 44.53 3.20
254 259 3.077556 GCCGAGCCTCCAAGGAGA 61.078 66.667 17.57 0.00 44.53 3.71
255 260 4.521062 CGCCGAGCCTCCAAGGAG 62.521 72.222 9.20 9.20 37.67 3.69
292 297 2.046892 CAGTGAGTTGCCCGAGGG 60.047 66.667 3.22 3.22 38.57 4.30
293 298 2.046892 CCAGTGAGTTGCCCGAGG 60.047 66.667 0.00 0.00 0.00 4.63
294 299 0.535102 AAACCAGTGAGTTGCCCGAG 60.535 55.000 0.00 0.00 0.00 4.63
295 300 0.106918 AAAACCAGTGAGTTGCCCGA 60.107 50.000 0.00 0.00 0.00 5.14
296 301 1.535462 CTAAAACCAGTGAGTTGCCCG 59.465 52.381 0.00 0.00 0.00 6.13
297 302 2.552743 GACTAAAACCAGTGAGTTGCCC 59.447 50.000 0.00 0.00 0.00 5.36
298 303 2.552743 GGACTAAAACCAGTGAGTTGCC 59.447 50.000 0.00 0.00 0.00 4.52
299 304 3.251004 CAGGACTAAAACCAGTGAGTTGC 59.749 47.826 0.00 0.00 0.00 4.17
300 305 4.703897 TCAGGACTAAAACCAGTGAGTTG 58.296 43.478 0.00 0.00 0.00 3.16
301 306 5.568620 ATCAGGACTAAAACCAGTGAGTT 57.431 39.130 0.00 0.00 0.00 3.01
302 307 5.568620 AATCAGGACTAAAACCAGTGAGT 57.431 39.130 0.00 0.00 0.00 3.41
303 308 5.997746 TCAAATCAGGACTAAAACCAGTGAG 59.002 40.000 0.00 0.00 0.00 3.51
310 315 4.217767 GGGTGGTCAAATCAGGACTAAAAC 59.782 45.833 0.00 0.00 35.61 2.43
325 330 2.478335 GAAGGAATGGCGGGTGGTCA 62.478 60.000 0.00 0.00 32.67 4.02
326 331 1.749258 GAAGGAATGGCGGGTGGTC 60.749 63.158 0.00 0.00 0.00 4.02
328 333 2.246761 TACGAAGGAATGGCGGGTGG 62.247 60.000 0.00 0.00 0.00 4.61
334 339 3.124560 GAGTTAGCTACGAAGGAATGGC 58.875 50.000 0.00 0.00 0.00 4.40
343 348 1.816835 CAGGTGGTGAGTTAGCTACGA 59.183 52.381 0.00 0.00 0.00 3.43
345 350 1.275291 TGCAGGTGGTGAGTTAGCTAC 59.725 52.381 0.00 0.00 0.00 3.58
346 351 1.639722 TGCAGGTGGTGAGTTAGCTA 58.360 50.000 0.00 0.00 0.00 3.32
348 353 1.373570 GATGCAGGTGGTGAGTTAGC 58.626 55.000 0.00 0.00 0.00 3.09
415 420 0.251634 CTCAGAACTCAGAAGGGGGC 59.748 60.000 0.00 0.00 0.00 5.80
431 436 1.531840 GCGATAGGAGGGGAGCTCA 60.532 63.158 17.19 0.00 0.00 4.26
432 437 1.228737 AGCGATAGGAGGGGAGCTC 60.229 63.158 4.71 4.71 0.00 4.09
433 438 1.532794 CAGCGATAGGAGGGGAGCT 60.533 63.158 0.00 0.00 35.06 4.09
434 439 0.902516 ATCAGCGATAGGAGGGGAGC 60.903 60.000 0.00 0.00 0.00 4.70
436 441 1.188219 GCATCAGCGATAGGAGGGGA 61.188 60.000 0.00 0.00 0.00 4.81
437 442 1.294780 GCATCAGCGATAGGAGGGG 59.705 63.158 0.00 0.00 0.00 4.79
440 445 2.524034 CGTATGCATCAGCGATAGGAG 58.476 52.381 0.19 0.00 46.23 3.69
441 446 1.202348 CCGTATGCATCAGCGATAGGA 59.798 52.381 0.19 0.00 46.23 2.94
442 447 1.633561 CCGTATGCATCAGCGATAGG 58.366 55.000 0.19 0.00 46.23 2.57
443 448 1.633561 CCCGTATGCATCAGCGATAG 58.366 55.000 0.19 0.00 46.23 2.08
444 449 0.246360 CCCCGTATGCATCAGCGATA 59.754 55.000 0.19 0.00 46.23 2.92
445 450 1.004560 CCCCGTATGCATCAGCGAT 60.005 57.895 0.19 0.00 46.23 4.58
446 451 2.087462 CTCCCCGTATGCATCAGCGA 62.087 60.000 0.19 0.00 46.23 4.93
463 468 2.603560 CCGCAGATTTCGAAGTAACCTC 59.396 50.000 0.00 0.00 0.00 3.85
470 475 1.565305 CTCCTCCGCAGATTTCGAAG 58.435 55.000 0.00 0.00 0.00 3.79
478 483 1.975327 CTTGAACCTCCTCCGCAGA 59.025 57.895 0.00 0.00 0.00 4.26
491 496 0.959553 AGTCGGAGAAGACGCTTGAA 59.040 50.000 0.00 0.00 45.26 2.69
494 499 1.884444 GGAGTCGGAGAAGACGCTT 59.116 57.895 1.42 0.00 45.26 4.68
555 560 6.707290 ACTGGTACATGTAACAAGATAAGCA 58.293 36.000 23.33 7.96 38.20 3.91
565 570 9.760077 AAGCTAATACATACTGGTACATGTAAC 57.240 33.333 14.26 14.26 40.14 2.50
566 571 9.976511 GAAGCTAATACATACTGGTACATGTAA 57.023 33.333 7.25 0.00 40.14 2.41
567 572 9.138596 TGAAGCTAATACATACTGGTACATGTA 57.861 33.333 0.08 0.08 40.79 2.29
568 573 8.018537 TGAAGCTAATACATACTGGTACATGT 57.981 34.615 2.69 2.69 38.20 3.21
570 575 8.478775 TCTGAAGCTAATACATACTGGTACAT 57.521 34.615 0.00 0.00 38.20 2.29
571 576 7.891498 TCTGAAGCTAATACATACTGGTACA 57.109 36.000 0.00 0.00 0.00 2.90
572 577 8.630917 TCTTCTGAAGCTAATACATACTGGTAC 58.369 37.037 12.54 0.00 0.00 3.34
575 580 7.151308 CCTCTTCTGAAGCTAATACATACTGG 58.849 42.308 12.54 0.00 0.00 4.00
576 581 7.651304 CACCTCTTCTGAAGCTAATACATACTG 59.349 40.741 12.54 0.00 0.00 2.74
577 582 7.343316 ACACCTCTTCTGAAGCTAATACATACT 59.657 37.037 12.54 0.00 0.00 2.12
578 583 7.493367 ACACCTCTTCTGAAGCTAATACATAC 58.507 38.462 12.54 0.00 0.00 2.39
579 584 7.342026 TGACACCTCTTCTGAAGCTAATACATA 59.658 37.037 12.54 0.00 0.00 2.29
580 585 6.155221 TGACACCTCTTCTGAAGCTAATACAT 59.845 38.462 12.54 0.00 0.00 2.29
581 586 5.480422 TGACACCTCTTCTGAAGCTAATACA 59.520 40.000 12.54 6.34 0.00 2.29
582 587 5.967088 TGACACCTCTTCTGAAGCTAATAC 58.033 41.667 12.54 4.08 0.00 1.89
583 588 5.394663 GCTGACACCTCTTCTGAAGCTAATA 60.395 44.000 12.54 0.00 0.00 0.98
584 589 4.622695 GCTGACACCTCTTCTGAAGCTAAT 60.623 45.833 12.54 0.00 0.00 1.73
585 590 3.306364 GCTGACACCTCTTCTGAAGCTAA 60.306 47.826 12.54 0.00 0.00 3.09
586 591 2.232452 GCTGACACCTCTTCTGAAGCTA 59.768 50.000 12.54 0.00 0.00 3.32
587 592 1.001860 GCTGACACCTCTTCTGAAGCT 59.998 52.381 12.54 0.00 0.00 3.74
588 593 1.437625 GCTGACACCTCTTCTGAAGC 58.562 55.000 12.54 0.00 0.00 3.86
589 594 1.671261 CGGCTGACACCTCTTCTGAAG 60.671 57.143 11.18 11.18 0.00 3.02
590 595 0.318441 CGGCTGACACCTCTTCTGAA 59.682 55.000 0.00 0.00 0.00 3.02
591 596 0.827925 ACGGCTGACACCTCTTCTGA 60.828 55.000 0.00 0.00 0.00 3.27
592 597 0.668706 CACGGCTGACACCTCTTCTG 60.669 60.000 0.00 0.00 0.00 3.02
593 598 1.115930 ACACGGCTGACACCTCTTCT 61.116 55.000 0.00 0.00 0.00 2.85
595 600 1.069765 CACACGGCTGACACCTCTT 59.930 57.895 0.00 0.00 0.00 2.85
596 601 2.134287 ACACACGGCTGACACCTCT 61.134 57.895 0.00 0.00 0.00 3.69
598 603 2.108976 CACACACGGCTGACACCT 59.891 61.111 0.00 0.00 0.00 4.00
599 604 3.649986 GCACACACGGCTGACACC 61.650 66.667 0.00 0.00 0.00 4.16
600 605 1.714899 AAAGCACACACGGCTGACAC 61.715 55.000 0.00 0.00 41.66 3.67
601 606 1.436195 GAAAGCACACACGGCTGACA 61.436 55.000 0.00 0.00 41.66 3.58
602 607 1.160329 AGAAAGCACACACGGCTGAC 61.160 55.000 0.00 0.00 41.66 3.51
603 608 1.146041 AGAAAGCACACACGGCTGA 59.854 52.632 0.00 0.00 41.66 4.26
604 609 1.280746 CAGAAAGCACACACGGCTG 59.719 57.895 0.00 0.00 41.66 4.85
605 610 2.546494 GCAGAAAGCACACACGGCT 61.546 57.895 0.00 0.00 45.15 5.52
623 628 0.318360 TATTATCAGCACGGCGTCGG 60.318 55.000 16.39 3.57 41.39 4.79
628 633 3.057019 TCACGATTATTATCAGCACGGC 58.943 45.455 0.00 0.00 0.00 5.68
698 703 2.010412 GATGGCCACATGGGGATGGA 62.010 60.000 21.28 0.00 38.34 3.41
704 709 1.000521 ACACTGATGGCCACATGGG 60.001 57.895 8.16 4.16 37.47 4.00
719 724 1.139853 GGAGGAGATGGGATGTGACAC 59.860 57.143 0.00 0.00 0.00 3.67
752 757 3.117663 TCCCTTGCAAGTTTCCAACTAGT 60.118 43.478 24.35 0.00 41.91 2.57
756 761 3.535280 TTTCCCTTGCAAGTTTCCAAC 57.465 42.857 24.35 0.00 0.00 3.77
757 762 3.517500 ACTTTTCCCTTGCAAGTTTCCAA 59.482 39.130 24.35 9.79 0.00 3.53
809 814 3.399181 CTAGGTGCCCCGCCTCAA 61.399 66.667 0.00 0.00 40.81 3.02
857 863 4.825252 ACATTACGGTCCGGGCGC 62.825 66.667 17.28 0.00 0.00 6.53
859 865 0.390124 TATGACATTACGGTCCGGGC 59.610 55.000 17.28 0.00 36.97 6.13
861 867 3.936372 AGATATGACATTACGGTCCGG 57.064 47.619 17.28 0.00 36.97 5.14
862 868 4.684703 GGAAAGATATGACATTACGGTCCG 59.315 45.833 10.48 10.48 36.97 4.79
863 869 5.607477 TGGAAAGATATGACATTACGGTCC 58.393 41.667 0.00 0.00 36.97 4.46
864 870 7.155328 AGATGGAAAGATATGACATTACGGTC 58.845 38.462 0.00 0.00 38.29 4.79
865 871 7.015682 AGAGATGGAAAGATATGACATTACGGT 59.984 37.037 0.00 0.00 0.00 4.83
866 872 7.382110 AGAGATGGAAAGATATGACATTACGG 58.618 38.462 0.00 0.00 0.00 4.02
867 873 8.706936 CAAGAGATGGAAAGATATGACATTACG 58.293 37.037 0.00 0.00 0.00 3.18
868 874 8.502387 GCAAGAGATGGAAAGATATGACATTAC 58.498 37.037 0.00 0.00 0.00 1.89
869 875 8.435187 AGCAAGAGATGGAAAGATATGACATTA 58.565 33.333 0.00 0.00 0.00 1.90
870 876 7.288560 AGCAAGAGATGGAAAGATATGACATT 58.711 34.615 0.00 0.00 0.00 2.71
871 877 6.839454 AGCAAGAGATGGAAAGATATGACAT 58.161 36.000 0.00 0.00 0.00 3.06
872 878 6.244552 AGCAAGAGATGGAAAGATATGACA 57.755 37.500 0.00 0.00 0.00 3.58
873 879 8.668510 TTTAGCAAGAGATGGAAAGATATGAC 57.331 34.615 0.00 0.00 0.00 3.06
874 880 9.281371 CATTTAGCAAGAGATGGAAAGATATGA 57.719 33.333 0.00 0.00 0.00 2.15
875 881 8.512956 CCATTTAGCAAGAGATGGAAAGATATG 58.487 37.037 0.00 0.00 41.20 1.78
876 882 7.668886 CCCATTTAGCAAGAGATGGAAAGATAT 59.331 37.037 2.92 0.00 41.20 1.63
877 883 7.000472 CCCATTTAGCAAGAGATGGAAAGATA 59.000 38.462 2.92 0.00 41.20 1.98
878 884 5.832060 CCCATTTAGCAAGAGATGGAAAGAT 59.168 40.000 2.92 0.00 41.20 2.40
894 900 3.864789 ACTAGGTGGCATCCCATTTAG 57.135 47.619 0.00 0.00 44.51 1.85
922 928 3.623906 ATTGAGAGGATGTGGTGTGAG 57.376 47.619 0.00 0.00 0.00 3.51
933 939 1.410517 CTAGCTGCCGAATTGAGAGGA 59.589 52.381 0.00 0.00 0.00 3.71
934 940 1.863267 CTAGCTGCCGAATTGAGAGG 58.137 55.000 0.00 0.00 0.00 3.69
946 952 2.743928 ACAAGCGTGGCTAGCTGC 60.744 61.111 15.72 15.91 45.31 5.25
951 957 2.047274 GCTGGACAAGCGTGGCTA 60.047 61.111 5.20 0.00 43.45 3.93
986 1038 1.133199 CCACCATAGCTCCCTCTCTCT 60.133 57.143 0.00 0.00 0.00 3.10
994 1046 1.153086 CCACAGCCACCATAGCTCC 60.153 63.158 0.00 0.00 38.95 4.70
1023 1075 2.610859 AGGGCGTTCATCACCCCT 60.611 61.111 0.00 0.00 45.48 4.79
1041 1093 2.552802 CTTGGAGAGCTTGCACAGG 58.447 57.895 0.00 0.00 0.00 4.00
1116 1168 2.493973 CTGCTCAGCTCGTCCCTC 59.506 66.667 0.00 0.00 0.00 4.30
1190 1242 2.440247 CCTTGTCCCGCCATTCCC 60.440 66.667 0.00 0.00 0.00 3.97
1191 1243 2.046285 CACCTTGTCCCGCCATTCC 61.046 63.158 0.00 0.00 0.00 3.01
1230 1282 1.107114 AGTCGTCGATGCAATCCTCT 58.893 50.000 0.00 0.00 41.39 3.69
1345 1412 1.153489 TGCGGATCTTGAGCTGCTC 60.153 57.895 22.38 22.38 37.30 4.26
1365 1432 2.051435 CTCTCGCTCGCCTCGATG 60.051 66.667 0.00 0.00 34.61 3.84
1366 1433 3.283684 CCTCTCGCTCGCCTCGAT 61.284 66.667 0.00 0.00 34.61 3.59
1381 1448 0.978146 AAGTCATACCTCCTGCGCCT 60.978 55.000 4.18 0.00 0.00 5.52
1398 1465 2.034066 TGGGCCGGCTCAAGAAAG 59.966 61.111 31.02 0.00 0.00 2.62
1415 1482 0.972883 AGAAGAAGCGCCAGAACTCT 59.027 50.000 2.29 0.00 0.00 3.24
1419 1486 3.972227 GCAGAAGAAGCGCCAGAA 58.028 55.556 2.29 0.00 0.00 3.02
1458 1526 0.039978 CTAGCCGCATCCTCGTACAG 60.040 60.000 0.00 0.00 0.00 2.74
1547 1615 1.002134 AATCGGCAACACCCTGAGG 60.002 57.895 0.00 0.00 40.04 3.86
1552 1620 2.635443 CCCACAATCGGCAACACCC 61.635 63.158 0.00 0.00 33.26 4.61
1568 1636 4.426313 CCAAGGCCTCCGGAACCC 62.426 72.222 17.58 14.45 0.00 4.11
1571 1639 3.567579 CTTGCCAAGGCCTCCGGAA 62.568 63.158 22.53 11.33 41.09 4.30
1574 1642 2.747855 GTCTTGCCAAGGCCTCCG 60.748 66.667 5.23 0.00 41.09 4.63
1616 1684 5.738783 GCACTGAAATTGGCCTTTTAACTGA 60.739 40.000 3.32 0.00 0.00 3.41
1628 1696 2.806608 AAGCTGTGCACTGAAATTGG 57.193 45.000 25.94 4.09 0.00 3.16
1642 1710 1.261619 GAGACACCGACACAAAAGCTG 59.738 52.381 0.00 0.00 0.00 4.24
1643 1711 1.583054 GAGACACCGACACAAAAGCT 58.417 50.000 0.00 0.00 0.00 3.74
1647 1715 0.460722 TTCCGAGACACCGACACAAA 59.539 50.000 0.00 0.00 0.00 2.83
1676 1744 3.304293 GCATTTGCCGTAAAATCTTCTGC 59.696 43.478 0.00 0.00 34.31 4.26
1703 1771 1.026718 CACCGCTGATCCCAAACTCC 61.027 60.000 0.00 0.00 0.00 3.85
1706 1774 1.303317 ACCACCGCTGATCCCAAAC 60.303 57.895 0.00 0.00 0.00 2.93
1736 1804 0.669318 TGTCGATGAGTTGCCGTTCC 60.669 55.000 0.00 0.00 0.00 3.62
1831 1899 8.940952 CCAAAATGTTAAAAAGACCAACTCAAA 58.059 29.630 0.00 0.00 0.00 2.69
1832 1900 8.097662 ACCAAAATGTTAAAAAGACCAACTCAA 58.902 29.630 0.00 0.00 0.00 3.02
1833 1901 7.616313 ACCAAAATGTTAAAAAGACCAACTCA 58.384 30.769 0.00 0.00 0.00 3.41
1834 1902 9.589111 TTACCAAAATGTTAAAAAGACCAACTC 57.411 29.630 0.00 0.00 0.00 3.01
1837 1905 8.831550 GCATTACCAAAATGTTAAAAAGACCAA 58.168 29.630 0.23 0.00 0.00 3.67
1838 1906 7.987458 TGCATTACCAAAATGTTAAAAAGACCA 59.013 29.630 0.23 0.00 0.00 4.02
1839 1907 8.279800 GTGCATTACCAAAATGTTAAAAAGACC 58.720 33.333 0.00 0.00 0.00 3.85
1840 1908 8.821894 TGTGCATTACCAAAATGTTAAAAAGAC 58.178 29.630 0.00 0.00 0.00 3.01
1841 1909 8.948631 TGTGCATTACCAAAATGTTAAAAAGA 57.051 26.923 0.00 0.00 0.00 2.52
1882 1950 8.999431 TGACCATCTTTATTTCTTGAAGTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1904 1972 5.355071 TGCACAGAATTGAAGACATATGACC 59.645 40.000 10.38 0.64 0.00 4.02
1946 2014 9.898152 TTGAACTTTTCATTCAACCCTAAAAAT 57.102 25.926 0.00 0.00 40.32 1.82
1952 2020 5.104982 TGCTTTGAACTTTTCATTCAACCCT 60.105 36.000 0.00 0.00 43.84 4.34
1953 2021 5.115480 TGCTTTGAACTTTTCATTCAACCC 58.885 37.500 0.00 0.00 43.84 4.11
1954 2022 6.660887 TTGCTTTGAACTTTTCATTCAACC 57.339 33.333 0.00 0.00 43.84 3.77
1959 2027 9.154847 GCCTATTATTGCTTTGAACTTTTCATT 57.845 29.630 0.00 0.00 39.84 2.57
1960 2028 8.313292 TGCCTATTATTGCTTTGAACTTTTCAT 58.687 29.630 0.00 0.00 39.84 2.57
1971 2039 6.183347 ACAGAGAGTTGCCTATTATTGCTTT 58.817 36.000 0.00 0.00 0.00 3.51
1984 2052 7.414436 TGTTACATGTTTTAACAGAGAGTTGC 58.586 34.615 2.30 0.00 43.04 4.17
1993 2061 7.556996 ACCAAGTACCTGTTACATGTTTTAACA 59.443 33.333 2.30 8.12 44.06 2.41
1994 2062 7.933396 ACCAAGTACCTGTTACATGTTTTAAC 58.067 34.615 2.30 3.03 32.41 2.01
2080 2148 4.332543 TGATTCTGCTACCGCACTTATTTG 59.667 41.667 0.00 0.00 42.25 2.32
2081 2149 4.513442 TGATTCTGCTACCGCACTTATTT 58.487 39.130 0.00 0.00 42.25 1.40
2090 2158 2.205074 GTGGTGATGATTCTGCTACCG 58.795 52.381 0.00 0.00 0.00 4.02
2132 2200 2.763933 CTGTCGCCTGAGCAATATGAT 58.236 47.619 0.00 0.00 39.83 2.45
2147 2215 6.688385 CCATTTGATAAACATAACTGCTGTCG 59.312 38.462 0.00 0.00 0.00 4.35
2187 2255 0.395311 AATAGCCGTCTGGAGTCGGA 60.395 55.000 15.25 0.00 46.88 4.55
2189 2257 2.295253 AAAATAGCCGTCTGGAGTCG 57.705 50.000 0.00 0.00 37.49 4.18
2228 2296 2.300437 GTGAGGGTAGCACAGTTCTTCT 59.700 50.000 0.00 0.00 36.31 2.85
2235 2303 0.904865 TCCAGGTGAGGGTAGCACAG 60.905 60.000 0.00 0.00 37.99 3.66
2295 2363 4.819630 GGACAAGGTAATAATCGCCAATGA 59.180 41.667 0.00 0.00 0.00 2.57
2309 2377 2.637872 AGCTAACAAGCTGGACAAGGTA 59.362 45.455 0.00 0.00 44.44 3.08
2345 2413 1.065491 TCCACCCTGTTCCATTCATCG 60.065 52.381 0.00 0.00 0.00 3.84
2376 2444 3.758425 AGCCCGTAATGTGGTAGTTTTT 58.242 40.909 0.00 0.00 0.00 1.94
2377 2445 3.428413 AGCCCGTAATGTGGTAGTTTT 57.572 42.857 0.00 0.00 0.00 2.43
2378 2446 4.700700 GATAGCCCGTAATGTGGTAGTTT 58.299 43.478 0.00 0.00 0.00 2.66
2379 2447 3.243636 CGATAGCCCGTAATGTGGTAGTT 60.244 47.826 0.00 0.00 0.00 2.24
2380 2448 2.295349 CGATAGCCCGTAATGTGGTAGT 59.705 50.000 0.00 0.00 0.00 2.73
2381 2449 2.295349 ACGATAGCCCGTAATGTGGTAG 59.705 50.000 0.00 0.00 41.44 3.18
2382 2450 2.309613 ACGATAGCCCGTAATGTGGTA 58.690 47.619 0.00 0.00 41.44 3.25
2383 2451 1.117150 ACGATAGCCCGTAATGTGGT 58.883 50.000 0.00 0.00 41.44 4.16
2384 2452 2.132762 GAACGATAGCCCGTAATGTGG 58.867 52.381 0.00 0.00 42.54 4.17
2385 2453 2.132762 GGAACGATAGCCCGTAATGTG 58.867 52.381 0.00 0.00 42.54 3.21
2386 2454 2.521105 GGAACGATAGCCCGTAATGT 57.479 50.000 0.00 0.00 42.54 2.71
2400 2468 3.546616 AAAAGCGGTAGTTTTTCGGAACG 60.547 43.478 0.00 0.00 40.99 3.95
2401 2469 3.614159 AAAGCGGTAGTTTTTCGGAAC 57.386 42.857 0.00 0.00 0.00 3.62
2402 2470 4.635833 AAAAAGCGGTAGTTTTTCGGAA 57.364 36.364 0.00 0.00 39.34 4.30
2435 2503 5.175127 CCAGCAACTTTTGTGGTAGTTTTT 58.825 37.500 0.00 0.00 32.50 1.94
2436 2504 4.754322 CCAGCAACTTTTGTGGTAGTTTT 58.246 39.130 0.00 0.00 32.50 2.43
2437 2505 3.430236 GCCAGCAACTTTTGTGGTAGTTT 60.430 43.478 0.00 0.00 35.58 2.66
2438 2506 2.100749 GCCAGCAACTTTTGTGGTAGTT 59.899 45.455 0.00 0.00 35.58 2.24
2439 2507 1.681264 GCCAGCAACTTTTGTGGTAGT 59.319 47.619 0.00 0.00 35.58 2.73
2440 2508 1.956477 AGCCAGCAACTTTTGTGGTAG 59.044 47.619 0.00 0.00 35.58 3.18
2441 2509 1.680735 CAGCCAGCAACTTTTGTGGTA 59.319 47.619 0.00 0.00 35.58 3.25
2442 2510 0.461135 CAGCCAGCAACTTTTGTGGT 59.539 50.000 0.00 0.00 35.58 4.16
2443 2511 0.461135 ACAGCCAGCAACTTTTGTGG 59.539 50.000 0.00 0.00 35.96 4.17
2444 2512 2.195922 GAACAGCCAGCAACTTTTGTG 58.804 47.619 0.00 0.00 0.00 3.33
2445 2513 1.136891 GGAACAGCCAGCAACTTTTGT 59.863 47.619 0.00 0.00 36.34 2.83
2446 2514 1.136695 TGGAACAGCCAGCAACTTTTG 59.863 47.619 0.00 0.00 43.33 2.44
2447 2515 1.484038 TGGAACAGCCAGCAACTTTT 58.516 45.000 0.00 0.00 43.33 2.27
2448 2516 3.205815 TGGAACAGCCAGCAACTTT 57.794 47.368 0.00 0.00 43.33 2.66
2467 2535 0.462375 GTTCGGCCACTTGGGTTTTT 59.538 50.000 2.24 0.00 39.65 1.94
2468 2536 1.730451 CGTTCGGCCACTTGGGTTTT 61.730 55.000 2.24 0.00 39.65 2.43
2469 2537 2.190841 CGTTCGGCCACTTGGGTTT 61.191 57.895 2.24 0.00 39.65 3.27
2470 2538 2.593436 CGTTCGGCCACTTGGGTT 60.593 61.111 2.24 0.00 39.65 4.11
2471 2539 4.636435 CCGTTCGGCCACTTGGGT 62.636 66.667 2.24 0.00 39.65 4.51
2472 2540 2.734948 TAACCGTTCGGCCACTTGGG 62.735 60.000 11.32 0.00 40.85 4.12
2473 2541 0.885596 TTAACCGTTCGGCCACTTGG 60.886 55.000 11.32 0.78 38.53 3.61
2474 2542 0.515564 CTTAACCGTTCGGCCACTTG 59.484 55.000 11.32 0.00 0.00 3.16
2475 2543 0.107268 ACTTAACCGTTCGGCCACTT 59.893 50.000 11.32 0.96 0.00 3.16
2476 2544 0.107268 AACTTAACCGTTCGGCCACT 59.893 50.000 11.32 0.00 0.00 4.00
2477 2545 0.946528 AAACTTAACCGTTCGGCCAC 59.053 50.000 11.32 0.00 0.00 5.01
2478 2546 1.677942 AAAACTTAACCGTTCGGCCA 58.322 45.000 11.32 0.00 0.00 5.36
2479 2547 3.250762 AGTTAAAACTTAACCGTTCGGCC 59.749 43.478 11.32 0.00 35.21 6.13
2480 2548 4.213674 CAGTTAAAACTTAACCGTTCGGC 58.786 43.478 11.32 0.00 37.08 5.54
2481 2549 4.319694 CCCAGTTAAAACTTAACCGTTCGG 60.320 45.833 9.81 9.81 37.08 4.30
2482 2550 4.319694 CCCCAGTTAAAACTTAACCGTTCG 60.320 45.833 5.82 0.00 37.08 3.95
2483 2551 4.580167 ACCCCAGTTAAAACTTAACCGTTC 59.420 41.667 5.82 0.00 37.08 3.95
2484 2552 4.535781 ACCCCAGTTAAAACTTAACCGTT 58.464 39.130 5.82 0.00 37.08 4.44
2485 2553 4.169059 ACCCCAGTTAAAACTTAACCGT 57.831 40.909 5.82 0.00 37.08 4.83
2486 2554 6.430616 TCATAACCCCAGTTAAAACTTAACCG 59.569 38.462 5.82 0.00 41.68 4.44
2487 2555 7.231115 TGTCATAACCCCAGTTAAAACTTAACC 59.769 37.037 5.82 0.00 41.68 2.85
2488 2556 8.168790 TGTCATAACCCCAGTTAAAACTTAAC 57.831 34.615 1.80 1.80 41.68 2.01
2489 2557 8.798402 CATGTCATAACCCCAGTTAAAACTTAA 58.202 33.333 0.00 0.00 41.68 1.85
2490 2558 7.945664 ACATGTCATAACCCCAGTTAAAACTTA 59.054 33.333 0.00 0.00 41.68 2.24
2491 2559 6.780522 ACATGTCATAACCCCAGTTAAAACTT 59.219 34.615 0.00 0.00 41.68 2.66
2492 2560 6.208599 CACATGTCATAACCCCAGTTAAAACT 59.791 38.462 0.00 0.00 41.68 2.66
2493 2561 6.386654 CACATGTCATAACCCCAGTTAAAAC 58.613 40.000 0.00 0.00 41.68 2.43
2494 2562 5.478679 CCACATGTCATAACCCCAGTTAAAA 59.521 40.000 0.00 0.00 41.68 1.52
2495 2563 5.013547 CCACATGTCATAACCCCAGTTAAA 58.986 41.667 0.00 0.00 41.68 1.52
2496 2564 4.568804 CCCACATGTCATAACCCCAGTTAA 60.569 45.833 0.00 0.00 41.68 2.01
2497 2565 3.053991 CCCACATGTCATAACCCCAGTTA 60.054 47.826 0.00 0.00 42.54 2.24
2498 2566 2.291540 CCCACATGTCATAACCCCAGTT 60.292 50.000 0.00 0.00 40.15 3.16
2499 2567 1.284785 CCCACATGTCATAACCCCAGT 59.715 52.381 0.00 0.00 0.00 4.00
2500 2568 1.410083 CCCCACATGTCATAACCCCAG 60.410 57.143 0.00 0.00 0.00 4.45
2501 2569 0.628522 CCCCACATGTCATAACCCCA 59.371 55.000 0.00 0.00 0.00 4.96
2502 2570 0.755327 GCCCCACATGTCATAACCCC 60.755 60.000 0.00 0.00 0.00 4.95
2503 2571 0.755327 GGCCCCACATGTCATAACCC 60.755 60.000 0.00 0.00 0.00 4.11
2504 2572 0.755327 GGGCCCCACATGTCATAACC 60.755 60.000 12.23 0.00 0.00 2.85
2505 2573 1.101049 CGGGCCCCACATGTCATAAC 61.101 60.000 18.66 0.00 0.00 1.89
2506 2574 1.225983 CGGGCCCCACATGTCATAA 59.774 57.895 18.66 0.00 0.00 1.90
2507 2575 2.915079 CGGGCCCCACATGTCATA 59.085 61.111 18.66 0.00 0.00 2.15
2508 2576 4.820744 GCGGGCCCCACATGTCAT 62.821 66.667 18.66 0.00 0.00 3.06
2526 2594 3.650369 CCGACAAAACCCTGACGG 58.350 61.111 0.00 0.00 45.45 4.79
2527 2595 2.613506 GGCCGACAAAACCCTGACG 61.614 63.158 0.00 0.00 34.86 4.35
2528 2596 1.527380 TGGCCGACAAAACCCTGAC 60.527 57.895 0.00 0.00 0.00 3.51
2529 2597 1.527380 GTGGCCGACAAAACCCTGA 60.527 57.895 0.00 0.00 0.00 3.86
2530 2598 1.795170 CTGTGGCCGACAAAACCCTG 61.795 60.000 0.00 0.00 32.80 4.45
2531 2599 1.528309 CTGTGGCCGACAAAACCCT 60.528 57.895 0.00 0.00 32.80 4.34
2532 2600 1.826487 ACTGTGGCCGACAAAACCC 60.826 57.895 0.00 0.00 32.80 4.11
2533 2601 1.358759 CACTGTGGCCGACAAAACC 59.641 57.895 0.00 0.00 32.80 3.27
2534 2602 1.299089 GCACTGTGGCCGACAAAAC 60.299 57.895 10.21 0.00 32.80 2.43
2535 2603 1.444119 GAGCACTGTGGCCGACAAAA 61.444 55.000 10.21 0.00 32.80 2.44
2536 2604 1.891919 GAGCACTGTGGCCGACAAA 60.892 57.895 10.21 0.00 32.80 2.83
2537 2605 2.280797 GAGCACTGTGGCCGACAA 60.281 61.111 10.21 0.00 32.80 3.18
2538 2606 3.545574 TGAGCACTGTGGCCGACA 61.546 61.111 10.21 2.81 0.00 4.35
2539 2607 3.044305 GTGAGCACTGTGGCCGAC 61.044 66.667 10.21 0.00 0.00 4.79
2540 2608 4.662961 CGTGAGCACTGTGGCCGA 62.663 66.667 10.21 0.00 0.00 5.54
2564 2632 4.462280 CCCTAACGGCCGTCACCC 62.462 72.222 34.29 0.00 0.00 4.61
2591 2659 3.835790 TTTTGACCTGGTCGGGGCG 62.836 63.158 21.15 0.00 37.14 6.13
2592 2660 2.114411 TTTTGACCTGGTCGGGGC 59.886 61.111 21.15 0.00 34.95 5.80
2593 2661 1.964373 CGTTTTGACCTGGTCGGGG 60.964 63.158 21.15 5.69 34.95 5.73
2594 2662 1.964373 CCGTTTTGACCTGGTCGGG 60.964 63.158 21.15 12.91 34.95 5.14
2595 2663 2.613506 GCCGTTTTGACCTGGTCGG 61.614 63.158 21.15 18.90 40.72 4.79
2596 2664 2.613506 GGCCGTTTTGACCTGGTCG 61.614 63.158 21.15 9.88 34.95 4.79
2597 2665 2.613506 CGGCCGTTTTGACCTGGTC 61.614 63.158 19.50 19.96 0.00 4.02
2598 2666 2.593436 CGGCCGTTTTGACCTGGT 60.593 61.111 19.50 0.00 0.00 4.00
2599 2667 4.038080 GCGGCCGTTTTGACCTGG 62.038 66.667 28.70 0.00 0.00 4.45
2600 2668 4.038080 GGCGGCCGTTTTGACCTG 62.038 66.667 28.70 0.00 0.00 4.00
2613 2681 3.775654 GACAGAGTGAGGGGGCGG 61.776 72.222 0.00 0.00 0.00 6.13
2614 2682 2.681778 AGACAGAGTGAGGGGGCG 60.682 66.667 0.00 0.00 0.00 6.13
2615 2683 2.363172 GGAGACAGAGTGAGGGGGC 61.363 68.421 0.00 0.00 0.00 5.80
2616 2684 1.687493 GGGAGACAGAGTGAGGGGG 60.687 68.421 0.00 0.00 0.00 5.40
2617 2685 0.686112 GAGGGAGACAGAGTGAGGGG 60.686 65.000 0.00 0.00 0.00 4.79
2618 2686 1.034838 CGAGGGAGACAGAGTGAGGG 61.035 65.000 0.00 0.00 0.00 4.30
2619 2687 1.662438 GCGAGGGAGACAGAGTGAGG 61.662 65.000 0.00 0.00 0.00 3.86
2620 2688 1.806568 GCGAGGGAGACAGAGTGAG 59.193 63.158 0.00 0.00 0.00 3.51
2621 2689 2.041115 CGCGAGGGAGACAGAGTGA 61.041 63.158 0.00 0.00 0.00 3.41
2622 2690 2.487428 CGCGAGGGAGACAGAGTG 59.513 66.667 0.00 0.00 0.00 3.51
2623 2691 3.444805 GCGCGAGGGAGACAGAGT 61.445 66.667 12.10 0.00 0.00 3.24
2624 2692 3.119709 GAGCGCGAGGGAGACAGAG 62.120 68.421 12.10 0.00 0.00 3.35
2625 2693 3.134792 GAGCGCGAGGGAGACAGA 61.135 66.667 12.10 0.00 0.00 3.41
2626 2694 3.443925 TGAGCGCGAGGGAGACAG 61.444 66.667 12.10 0.00 0.00 3.51
2627 2695 3.749064 GTGAGCGCGAGGGAGACA 61.749 66.667 12.10 0.00 0.00 3.41
2628 2696 3.404141 GAGTGAGCGCGAGGGAGAC 62.404 68.421 12.10 0.00 0.00 3.36
2629 2697 3.134792 GAGTGAGCGCGAGGGAGA 61.135 66.667 12.10 0.00 0.00 3.71
2630 2698 3.443925 TGAGTGAGCGCGAGGGAG 61.444 66.667 12.10 0.00 0.00 4.30
2631 2699 3.749064 GTGAGTGAGCGCGAGGGA 61.749 66.667 12.10 0.00 0.00 4.20
2632 2700 3.691744 GAGTGAGTGAGCGCGAGGG 62.692 68.421 12.10 0.00 0.00 4.30
2633 2701 2.202544 GAGTGAGTGAGCGCGAGG 60.203 66.667 12.10 0.00 0.00 4.63
2634 2702 1.226267 GAGAGTGAGTGAGCGCGAG 60.226 63.158 12.10 0.00 0.00 5.03
2635 2703 1.966451 TGAGAGTGAGTGAGCGCGA 60.966 57.895 12.10 0.00 0.00 5.87
2636 2704 1.799519 GTGAGAGTGAGTGAGCGCG 60.800 63.158 0.00 0.00 0.00 6.86
2637 2705 0.455972 GAGTGAGAGTGAGTGAGCGC 60.456 60.000 0.00 0.00 0.00 5.92
2638 2706 1.130373 GAGAGTGAGAGTGAGTGAGCG 59.870 57.143 0.00 0.00 0.00 5.03
2639 2707 1.472480 GGAGAGTGAGAGTGAGTGAGC 59.528 57.143 0.00 0.00 0.00 4.26
2640 2708 2.091541 GGGAGAGTGAGAGTGAGTGAG 58.908 57.143 0.00 0.00 0.00 3.51
2641 2709 1.272203 GGGGAGAGTGAGAGTGAGTGA 60.272 57.143 0.00 0.00 0.00 3.41
2642 2710 1.181786 GGGGAGAGTGAGAGTGAGTG 58.818 60.000 0.00 0.00 0.00 3.51
2643 2711 0.040499 GGGGGAGAGTGAGAGTGAGT 59.960 60.000 0.00 0.00 0.00 3.41
2644 2712 2.894858 GGGGGAGAGTGAGAGTGAG 58.105 63.158 0.00 0.00 0.00 3.51
2659 2727 1.687493 GGGAGTGAGAGTGAGGGGG 60.687 68.421 0.00 0.00 0.00 5.40
2660 2728 1.687493 GGGGAGTGAGAGTGAGGGG 60.687 68.421 0.00 0.00 0.00 4.79
2661 2729 1.687493 GGGGGAGTGAGAGTGAGGG 60.687 68.421 0.00 0.00 0.00 4.30
2662 2730 4.042251 GGGGGAGTGAGAGTGAGG 57.958 66.667 0.00 0.00 0.00 3.86
2676 2744 2.269241 GGAAACAGAGCGAGGGGG 59.731 66.667 0.00 0.00 0.00 5.40
2677 2745 2.269241 GGGAAACAGAGCGAGGGG 59.731 66.667 0.00 0.00 0.00 4.79
2678 2746 2.269241 GGGGAAACAGAGCGAGGG 59.731 66.667 0.00 0.00 0.00 4.30
2679 2747 1.078848 CAGGGGAAACAGAGCGAGG 60.079 63.158 0.00 0.00 0.00 4.63
2680 2748 1.078848 CCAGGGGAAACAGAGCGAG 60.079 63.158 0.00 0.00 0.00 5.03
2681 2749 3.068881 CCAGGGGAAACAGAGCGA 58.931 61.111 0.00 0.00 0.00 4.93
2682 2750 2.747855 GCCAGGGGAAACAGAGCG 60.748 66.667 0.00 0.00 0.00 5.03
2683 2751 2.361737 GGCCAGGGGAAACAGAGC 60.362 66.667 0.00 0.00 0.00 4.09
2684 2752 2.045926 CGGCCAGGGGAAACAGAG 60.046 66.667 2.24 0.00 0.00 3.35
2685 2753 2.528127 TCGGCCAGGGGAAACAGA 60.528 61.111 2.24 0.00 0.00 3.41
2686 2754 2.045926 CTCGGCCAGGGGAAACAG 60.046 66.667 2.24 0.00 0.00 3.16
2687 2755 4.344865 GCTCGGCCAGGGGAAACA 62.345 66.667 2.24 0.00 0.00 2.83
2688 2756 3.978571 GAGCTCGGCCAGGGGAAAC 62.979 68.421 2.24 0.00 0.00 2.78
2689 2757 3.717294 GAGCTCGGCCAGGGGAAA 61.717 66.667 2.24 0.00 0.00 3.13
2690 2758 4.722535 AGAGCTCGGCCAGGGGAA 62.723 66.667 8.37 0.00 0.00 3.97
2694 2762 3.160047 ATGGAGAGCTCGGCCAGG 61.160 66.667 27.53 0.00 34.74 4.45
2695 2763 2.420890 GATGGAGAGCTCGGCCAG 59.579 66.667 27.53 0.00 34.74 4.85
2696 2764 3.531207 CGATGGAGAGCTCGGCCA 61.531 66.667 26.53 26.53 35.91 5.36
2697 2765 3.492311 GACGATGGAGAGCTCGGCC 62.492 68.421 18.43 18.43 36.92 6.13
2698 2766 2.026879 GACGATGGAGAGCTCGGC 59.973 66.667 8.37 4.49 39.16 5.54
2699 2767 2.329690 CGACGATGGAGAGCTCGG 59.670 66.667 8.37 0.00 39.16 4.63
2700 2768 2.352915 GCGACGATGGAGAGCTCG 60.353 66.667 8.37 0.00 40.62 5.03
2701 2769 2.026879 GGCGACGATGGAGAGCTC 59.973 66.667 5.27 5.27 0.00 4.09
2713 2781 3.222354 AACTGAGGTGGTCGGCGAC 62.222 63.158 30.72 30.72 34.44 5.19
2714 2782 2.915659 AACTGAGGTGGTCGGCGA 60.916 61.111 4.99 4.99 34.44 5.54
2715 2783 2.432628 GAACTGAGGTGGTCGGCG 60.433 66.667 0.00 0.00 34.44 6.46
2716 2784 2.047179 GGAACTGAGGTGGTCGGC 60.047 66.667 0.00 0.00 34.44 5.54
2717 2785 1.592223 GAGGAACTGAGGTGGTCGG 59.408 63.158 0.00 0.00 41.55 4.79
2718 2786 1.213013 CGAGGAACTGAGGTGGTCG 59.787 63.158 0.00 0.00 41.55 4.79
2719 2787 0.244178 GACGAGGAACTGAGGTGGTC 59.756 60.000 0.00 0.00 41.55 4.02
2720 2788 1.524863 CGACGAGGAACTGAGGTGGT 61.525 60.000 0.00 0.00 41.55 4.16
2721 2789 1.213013 CGACGAGGAACTGAGGTGG 59.787 63.158 0.00 0.00 41.55 4.61
2722 2790 1.444553 GCGACGAGGAACTGAGGTG 60.445 63.158 0.00 0.00 41.55 4.00
2723 2791 2.637383 GGCGACGAGGAACTGAGGT 61.637 63.158 0.00 0.00 41.55 3.85
2724 2792 2.182030 GGCGACGAGGAACTGAGG 59.818 66.667 0.00 0.00 41.55 3.86
2743 2811 0.323725 TTCCAAGAAGGCATCCTGGC 60.324 55.000 2.47 0.00 39.21 4.85
2744 2812 2.029623 CATTCCAAGAAGGCATCCTGG 58.970 52.381 0.87 0.87 40.51 4.45
2745 2813 3.008835 TCATTCCAAGAAGGCATCCTG 57.991 47.619 0.00 0.00 37.29 3.86
2746 2814 3.563223 CATCATTCCAAGAAGGCATCCT 58.437 45.455 0.00 0.00 37.29 3.24
2747 2815 2.626743 CCATCATTCCAAGAAGGCATCC 59.373 50.000 0.00 0.00 37.29 3.51
2748 2816 2.626743 CCCATCATTCCAAGAAGGCATC 59.373 50.000 0.00 0.00 37.29 3.91
2749 2817 2.674420 CCCATCATTCCAAGAAGGCAT 58.326 47.619 0.00 0.00 37.29 4.40
2750 2818 1.342275 CCCCATCATTCCAAGAAGGCA 60.342 52.381 0.00 0.00 37.29 4.75
2751 2819 1.063717 TCCCCATCATTCCAAGAAGGC 60.064 52.381 0.00 0.00 37.29 4.35
2752 2820 3.117398 TCATCCCCATCATTCCAAGAAGG 60.117 47.826 0.00 0.00 39.47 3.46
2753 2821 4.141321 TCTCATCCCCATCATTCCAAGAAG 60.141 45.833 0.00 0.00 0.00 2.85
2754 2822 3.787577 TCTCATCCCCATCATTCCAAGAA 59.212 43.478 0.00 0.00 0.00 2.52
2755 2823 3.393609 CTCTCATCCCCATCATTCCAAGA 59.606 47.826 0.00 0.00 0.00 3.02
2756 2824 3.752665 CTCTCATCCCCATCATTCCAAG 58.247 50.000 0.00 0.00 0.00 3.61
2757 2825 2.158564 GCTCTCATCCCCATCATTCCAA 60.159 50.000 0.00 0.00 0.00 3.53
2758 2826 1.422781 GCTCTCATCCCCATCATTCCA 59.577 52.381 0.00 0.00 0.00 3.53
2759 2827 1.704070 AGCTCTCATCCCCATCATTCC 59.296 52.381 0.00 0.00 0.00 3.01
2760 2828 2.290197 GGAGCTCTCATCCCCATCATTC 60.290 54.545 14.64 0.00 0.00 2.67
2761 2829 1.704070 GGAGCTCTCATCCCCATCATT 59.296 52.381 14.64 0.00 0.00 2.57
2762 2830 1.360185 GGAGCTCTCATCCCCATCAT 58.640 55.000 14.64 0.00 0.00 2.45
2763 2831 1.117749 CGGAGCTCTCATCCCCATCA 61.118 60.000 14.64 0.00 32.86 3.07
2764 2832 0.829602 TCGGAGCTCTCATCCCCATC 60.830 60.000 14.64 0.00 32.86 3.51
2765 2833 1.118356 GTCGGAGCTCTCATCCCCAT 61.118 60.000 14.64 0.00 32.86 4.00
2766 2834 1.758514 GTCGGAGCTCTCATCCCCA 60.759 63.158 14.64 0.00 32.86 4.96
2767 2835 2.851071 CGTCGGAGCTCTCATCCCC 61.851 68.421 14.64 0.00 32.86 4.81
2768 2836 1.824329 TCGTCGGAGCTCTCATCCC 60.824 63.158 14.64 0.00 32.86 3.85
2769 2837 1.357334 GTCGTCGGAGCTCTCATCC 59.643 63.158 14.64 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.