Multiple sequence alignment - TraesCS3A01G074200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G074200 chr3A 100.000 3517 0 0 2264 5780 46459583 46456067 0.000000e+00 6495.0
1 TraesCS3A01G074200 chr3A 100.000 1995 0 0 1 1995 46461846 46459852 0.000000e+00 3685.0
2 TraesCS3A01G074200 chr3A 88.328 1902 143 42 2937 4787 46213513 46211640 0.000000e+00 2209.0
3 TraesCS3A01G074200 chr3A 93.325 764 49 1 2949 3712 503705062 503705823 0.000000e+00 1127.0
4 TraesCS3A01G074200 chr3A 87.307 843 59 28 3974 4782 503705930 503706758 0.000000e+00 920.0
5 TraesCS3A01G074200 chr3A 89.098 532 34 13 1001 1513 46215076 46214550 1.760000e-179 640.0
6 TraesCS3A01G074200 chr3A 91.506 259 21 1 1737 1994 46214312 46214054 7.120000e-94 355.0
7 TraesCS3A01G074200 chr3A 91.818 220 11 1 1504 1723 46214510 46214298 3.390000e-77 300.0
8 TraesCS3A01G074200 chr3A 81.768 362 41 13 1163 1506 503703748 503704102 4.410000e-71 279.0
9 TraesCS3A01G074200 chr3A 87.137 241 27 2 2264 2504 46214029 46213793 2.650000e-68 270.0
10 TraesCS3A01G074200 chr3A 96.377 138 4 1 2674 2811 46213802 46213666 5.830000e-55 226.0
11 TraesCS3A01G074200 chr3A 90.909 165 15 0 2754 2918 46213666 46213502 7.540000e-54 222.0
12 TraesCS3A01G074200 chr3A 82.286 175 14 6 971 1135 503703511 503703678 1.010000e-27 135.0
13 TraesCS3A01G074200 chr3A 79.293 198 34 5 2339 2534 709472886 709473078 1.310000e-26 132.0
14 TraesCS3A01G074200 chr3B 93.665 1468 69 10 2264 3723 56454790 56453339 0.000000e+00 2174.0
15 TraesCS3A01G074200 chr3B 92.668 1132 57 8 870 1995 56455967 56454856 0.000000e+00 1607.0
16 TraesCS3A01G074200 chr3B 91.087 1021 45 25 3937 4921 56453320 56452310 0.000000e+00 1339.0
17 TraesCS3A01G074200 chr3B 93.325 764 49 1 2949 3712 495103261 495104022 0.000000e+00 1127.0
18 TraesCS3A01G074200 chr3B 87.709 838 70 23 3975 4788 495104125 495104953 0.000000e+00 946.0
19 TraesCS3A01G074200 chr3B 95.089 224 11 0 72 295 56456194 56455971 2.560000e-93 353.0
20 TraesCS3A01G074200 chr3B 80.645 372 35 15 1163 1506 495101936 495102298 2.670000e-63 254.0
21 TraesCS3A01G074200 chr3B 94.595 37 0 1 4783 4819 495104995 495105029 8.090000e-04 56.5
22 TraesCS3A01G074200 chr3D 93.063 764 51 1 2949 3712 379488340 379489101 0.000000e+00 1116.0
23 TraesCS3A01G074200 chr3D 87.412 850 70 25 3968 4788 379489193 379490034 0.000000e+00 942.0
24 TraesCS3A01G074200 chr3D 93.333 240 15 1 4922 5161 101799407 101799645 2.560000e-93 353.0
25 TraesCS3A01G074200 chr3D 90.769 260 18 4 4922 5179 313602417 313602162 5.550000e-90 342.0
26 TraesCS3A01G074200 chr3D 91.429 245 17 4 4922 5164 340338398 340338156 3.340000e-87 333.0
27 TraesCS3A01G074200 chr3D 80.601 366 43 17 1163 1506 379487033 379487392 2.070000e-64 257.0
28 TraesCS3A01G074200 chr3D 81.768 181 19 12 963 1135 379486789 379486963 7.810000e-29 139.0
29 TraesCS3A01G074200 chr2D 90.747 616 47 3 5171 5780 536604256 536603645 0.000000e+00 813.0
30 TraesCS3A01G074200 chr1A 90.081 615 51 3 5171 5779 498070416 498071026 0.000000e+00 789.0
31 TraesCS3A01G074200 chr1A 89.037 301 27 3 5486 5780 86124855 86125155 9.150000e-98 368.0
32 TraesCS3A01G074200 chr1A 79.330 179 29 3 5171 5349 213267268 213267098 1.020000e-22 119.0
33 TraesCS3A01G074200 chr5A 94.515 474 18 3 5309 5780 54640953 54640486 0.000000e+00 725.0
34 TraesCS3A01G074200 chr5A 87.207 555 70 1 300 853 370089840 370090394 1.060000e-176 630.0
35 TraesCS3A01G074200 chr5A 90.310 258 22 3 4915 5171 361364572 361364317 9.280000e-88 335.0
36 TraesCS3A01G074200 chr6A 88.117 547 63 2 308 853 405827238 405827783 0.000000e+00 649.0
37 TraesCS3A01G074200 chr6A 88.889 261 24 5 4912 5171 7141178 7141434 3.360000e-82 316.0
38 TraesCS3A01G074200 chr5D 87.433 557 67 3 300 855 397029805 397030359 6.320000e-179 638.0
39 TraesCS3A01G074200 chr5D 86.823 554 71 2 298 850 421912343 421912895 8.230000e-173 617.0
40 TraesCS3A01G074200 chr5D 92.245 245 15 4 4918 5161 554139662 554139903 1.540000e-90 344.0
41 TraesCS3A01G074200 chr5D 90.612 245 19 4 4919 5161 464526374 464526132 7.220000e-84 322.0
42 TraesCS3A01G074200 chr4D 87.387 555 69 1 300 853 108101238 108101792 2.270000e-178 636.0
43 TraesCS3A01G074200 chr1D 86.308 577 76 3 291 865 250741394 250740819 4.920000e-175 625.0
44 TraesCS3A01G074200 chr1D 86.631 561 73 2 298 857 19875238 19874679 2.290000e-173 619.0
45 TraesCS3A01G074200 chr6D 86.871 556 71 2 299 853 34971947 34972501 6.360000e-174 621.0
46 TraesCS3A01G074200 chrUn 86.667 555 72 2 300 853 115109769 115110322 1.060000e-171 614.0
47 TraesCS3A01G074200 chr7D 92.213 244 17 2 4918 5161 621304179 621304420 1.540000e-90 344.0
48 TraesCS3A01G074200 chr7D 90.574 244 21 2 4918 5161 207082582 207082823 7.220000e-84 322.0
49 TraesCS3A01G074200 chr7D 86.022 93 12 1 5688 5779 575577972 575578064 1.330000e-16 99.0
50 TraesCS3A01G074200 chr7D 84.536 97 7 4 5688 5776 2584339 2584435 7.980000e-14 89.8
51 TraesCS3A01G074200 chr4B 82.738 168 22 6 2338 2502 550392480 550392317 6.040000e-30 143.0
52 TraesCS3A01G074200 chr4B 79.235 183 30 3 5167 5349 92973115 92973289 2.830000e-23 121.0
53 TraesCS3A01G074200 chr4B 79.330 179 29 3 5171 5349 479226488 479226318 1.020000e-22 119.0
54 TraesCS3A01G074200 chr7B 83.019 159 22 4 2343 2499 4610009 4610164 7.810000e-29 139.0
55 TraesCS3A01G074200 chr7B 80.447 179 27 5 5171 5349 463484043 463483873 4.700000e-26 130.0
56 TraesCS3A01G074200 chr6B 81.707 164 22 7 2339 2499 666181387 666181545 4.700000e-26 130.0
57 TraesCS3A01G074200 chr6B 80.982 163 25 5 2339 2499 666224911 666225069 2.190000e-24 124.0
58 TraesCS3A01G074200 chr1B 79.888 179 28 3 5171 5349 548669666 548669836 2.190000e-24 124.0
59 TraesCS3A01G074200 chr1B 79.348 184 30 3 5166 5349 15643673 15643848 7.870000e-24 122.0
60 TraesCS3A01G074200 chr2B 78.894 199 25 9 2337 2534 770106623 770106441 1.020000e-22 119.0
61 TraesCS3A01G074200 chr2A 79.330 179 29 3 5171 5349 74246361 74246191 1.020000e-22 119.0
62 TraesCS3A01G074200 chr2A 89.286 56 5 1 5725 5780 368958750 368958696 1.040000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G074200 chr3A 46456067 46461846 5779 True 5090.000000 6495 100.00000 1 5780 2 chr3A.!!$R2 5779
1 TraesCS3A01G074200 chr3A 503703511 503706758 3247 False 615.250000 1127 86.17150 971 4782 4 chr3A.!!$F2 3811
2 TraesCS3A01G074200 chr3A 46211640 46215076 3436 True 603.142857 2209 90.73900 1001 4787 7 chr3A.!!$R1 3786
3 TraesCS3A01G074200 chr3B 56452310 56456194 3884 True 1368.250000 2174 93.12725 72 4921 4 chr3B.!!$R1 4849
4 TraesCS3A01G074200 chr3B 495101936 495105029 3093 False 595.875000 1127 89.06850 1163 4819 4 chr3B.!!$F1 3656
5 TraesCS3A01G074200 chr3D 379486789 379490034 3245 False 613.500000 1116 85.71100 963 4788 4 chr3D.!!$F2 3825
6 TraesCS3A01G074200 chr2D 536603645 536604256 611 True 813.000000 813 90.74700 5171 5780 1 chr2D.!!$R1 609
7 TraesCS3A01G074200 chr1A 498070416 498071026 610 False 789.000000 789 90.08100 5171 5779 1 chr1A.!!$F2 608
8 TraesCS3A01G074200 chr5A 370089840 370090394 554 False 630.000000 630 87.20700 300 853 1 chr5A.!!$F1 553
9 TraesCS3A01G074200 chr6A 405827238 405827783 545 False 649.000000 649 88.11700 308 853 1 chr6A.!!$F2 545
10 TraesCS3A01G074200 chr5D 397029805 397030359 554 False 638.000000 638 87.43300 300 855 1 chr5D.!!$F1 555
11 TraesCS3A01G074200 chr5D 421912343 421912895 552 False 617.000000 617 86.82300 298 850 1 chr5D.!!$F2 552
12 TraesCS3A01G074200 chr4D 108101238 108101792 554 False 636.000000 636 87.38700 300 853 1 chr4D.!!$F1 553
13 TraesCS3A01G074200 chr1D 250740819 250741394 575 True 625.000000 625 86.30800 291 865 1 chr1D.!!$R2 574
14 TraesCS3A01G074200 chr1D 19874679 19875238 559 True 619.000000 619 86.63100 298 857 1 chr1D.!!$R1 559
15 TraesCS3A01G074200 chr6D 34971947 34972501 554 False 621.000000 621 86.87100 299 853 1 chr6D.!!$F1 554
16 TraesCS3A01G074200 chrUn 115109769 115110322 553 False 614.000000 614 86.66700 300 853 1 chrUn.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.034616 CATTTTTGGCCCGGCAGAAA 59.965 50.000 12.58 9.04 0.00 2.52 F
955 958 0.107410 TTCACGGCACTTGGTGACTT 60.107 50.000 1.57 0.00 42.43 3.01 F
1542 1715 0.399833 TTAGACCATGCCACACTGCA 59.600 50.000 0.00 0.00 46.94 4.41 F
3200 3726 1.375396 CACGTCCTTCATCGGGCAA 60.375 57.895 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1504 0.320697 GGCTAACCTTCACGTGGACT 59.679 55.000 17.00 0.0 0.00 3.85 R
2884 3403 0.476771 ACCCGGTCAATTCTTGTGGT 59.523 50.000 0.00 0.0 0.00 4.16 R
3242 3768 1.301087 CCTGACAACGCCGGTGTTA 60.301 57.895 31.59 16.6 0.00 2.41 R
4996 5693 0.107831 ACTAAAGTTGCCACCTCGCA 59.892 50.000 0.00 0.0 36.85 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.437289 TCAGTTCGCAACAATCTTCATTT 57.563 34.783 2.61 0.00 0.00 2.32
23 24 5.830912 TCAGTTCGCAACAATCTTCATTTT 58.169 33.333 2.61 0.00 0.00 1.82
24 25 6.272318 TCAGTTCGCAACAATCTTCATTTTT 58.728 32.000 2.61 0.00 0.00 1.94
25 26 6.198778 TCAGTTCGCAACAATCTTCATTTTTG 59.801 34.615 2.61 0.00 34.16 2.44
26 27 5.463061 AGTTCGCAACAATCTTCATTTTTGG 59.537 36.000 2.61 0.00 32.41 3.28
27 28 3.740321 TCGCAACAATCTTCATTTTTGGC 59.260 39.130 0.00 0.00 32.41 4.52
28 29 3.120580 CGCAACAATCTTCATTTTTGGCC 60.121 43.478 0.00 0.00 32.41 5.36
29 30 3.189080 GCAACAATCTTCATTTTTGGCCC 59.811 43.478 0.00 0.00 32.41 5.80
30 31 3.317603 ACAATCTTCATTTTTGGCCCG 57.682 42.857 0.00 0.00 0.00 6.13
31 32 2.028203 ACAATCTTCATTTTTGGCCCGG 60.028 45.455 0.00 0.00 0.00 5.73
32 33 0.536724 ATCTTCATTTTTGGCCCGGC 59.463 50.000 0.00 0.00 0.00 6.13
33 34 0.829602 TCTTCATTTTTGGCCCGGCA 60.830 50.000 12.58 0.00 0.00 5.69
34 35 0.390209 CTTCATTTTTGGCCCGGCAG 60.390 55.000 12.58 0.00 0.00 4.85
35 36 0.829602 TTCATTTTTGGCCCGGCAGA 60.830 50.000 12.58 0.00 0.00 4.26
36 37 0.829602 TCATTTTTGGCCCGGCAGAA 60.830 50.000 12.58 1.91 0.00 3.02
37 38 0.034616 CATTTTTGGCCCGGCAGAAA 59.965 50.000 12.58 9.04 0.00 2.52
38 39 0.761802 ATTTTTGGCCCGGCAGAAAA 59.238 45.000 18.75 18.75 32.03 2.29
39 40 0.179070 TTTTTGGCCCGGCAGAAAAC 60.179 50.000 12.58 0.00 0.00 2.43
40 41 2.034048 TTTTGGCCCGGCAGAAAACC 62.034 55.000 12.58 0.00 0.00 3.27
41 42 3.740495 TTGGCCCGGCAGAAAACCA 62.740 57.895 12.58 0.00 0.00 3.67
42 43 3.373565 GGCCCGGCAGAAAACCAG 61.374 66.667 12.58 0.00 0.00 4.00
43 44 4.056125 GCCCGGCAGAAAACCAGC 62.056 66.667 3.91 0.00 0.00 4.85
44 45 3.737172 CCCGGCAGAAAACCAGCG 61.737 66.667 0.00 0.00 0.00 5.18
45 46 2.978010 CCGGCAGAAAACCAGCGT 60.978 61.111 0.00 0.00 0.00 5.07
46 47 2.551912 CCGGCAGAAAACCAGCGTT 61.552 57.895 0.00 0.00 0.00 4.84
47 48 1.358759 CGGCAGAAAACCAGCGTTT 59.641 52.632 0.00 0.00 44.20 3.60
48 49 0.589223 CGGCAGAAAACCAGCGTTTA 59.411 50.000 0.00 0.00 41.42 2.01
49 50 1.199097 CGGCAGAAAACCAGCGTTTAT 59.801 47.619 0.00 0.00 41.42 1.40
50 51 2.417239 CGGCAGAAAACCAGCGTTTATA 59.583 45.455 0.00 0.00 41.42 0.98
51 52 3.120130 CGGCAGAAAACCAGCGTTTATAA 60.120 43.478 0.00 0.00 41.42 0.98
52 53 4.163552 GGCAGAAAACCAGCGTTTATAAC 58.836 43.478 0.00 0.00 41.42 1.89
53 54 4.163552 GCAGAAAACCAGCGTTTATAACC 58.836 43.478 0.00 0.00 41.42 2.85
54 55 4.082949 GCAGAAAACCAGCGTTTATAACCT 60.083 41.667 0.00 0.00 41.42 3.50
55 56 5.564063 GCAGAAAACCAGCGTTTATAACCTT 60.564 40.000 0.00 0.00 41.42 3.50
56 57 6.084277 CAGAAAACCAGCGTTTATAACCTTC 58.916 40.000 0.00 0.00 41.42 3.46
57 58 6.002082 AGAAAACCAGCGTTTATAACCTTCT 58.998 36.000 0.00 0.00 41.42 2.85
58 59 6.489022 AGAAAACCAGCGTTTATAACCTTCTT 59.511 34.615 0.00 0.00 41.42 2.52
59 60 7.662669 AGAAAACCAGCGTTTATAACCTTCTTA 59.337 33.333 0.00 0.00 41.42 2.10
60 61 6.732531 AACCAGCGTTTATAACCTTCTTAC 57.267 37.500 0.00 0.00 0.00 2.34
61 62 6.046290 ACCAGCGTTTATAACCTTCTTACT 57.954 37.500 0.00 0.00 0.00 2.24
62 63 5.873164 ACCAGCGTTTATAACCTTCTTACTG 59.127 40.000 0.00 0.00 0.00 2.74
63 64 6.103997 CCAGCGTTTATAACCTTCTTACTGA 58.896 40.000 0.00 0.00 0.00 3.41
64 65 6.761714 CCAGCGTTTATAACCTTCTTACTGAT 59.238 38.462 0.00 0.00 0.00 2.90
65 66 7.924412 CCAGCGTTTATAACCTTCTTACTGATA 59.076 37.037 0.00 0.00 0.00 2.15
66 67 9.477484 CAGCGTTTATAACCTTCTTACTGATAT 57.523 33.333 0.00 0.00 0.00 1.63
74 75 7.865706 AACCTTCTTACTGATATTTTCGCAT 57.134 32.000 0.00 0.00 0.00 4.73
89 90 2.668250 TCGCATATAAATGTCGACGGG 58.332 47.619 11.62 2.41 37.01 5.28
157 158 2.094752 CCAACCGGAGCGAAATTCAAAT 60.095 45.455 9.46 0.00 0.00 2.32
180 181 1.000233 GCTGCTGCAACATGACAACG 61.000 55.000 11.11 0.00 39.41 4.10
184 185 0.888736 CTGCAACATGACAACGGGGA 60.889 55.000 0.00 0.00 0.00 4.81
249 250 3.809832 GCTGAATTTGCCTCTCGCTAATA 59.190 43.478 0.00 0.00 41.28 0.98
251 252 4.380531 TGAATTTGCCTCTCGCTAATAGG 58.619 43.478 0.00 0.00 41.28 2.57
255 256 1.329256 GCCTCTCGCTAATAGGTCCA 58.671 55.000 0.00 0.00 32.67 4.02
295 296 4.262089 TCACATGCGCCACCACCA 62.262 61.111 4.18 0.00 0.00 4.17
296 297 3.293714 CACATGCGCCACCACCAA 61.294 61.111 4.18 0.00 0.00 3.67
354 355 9.173939 GAAATTAAATCATAGAATGAACTGCCG 57.826 33.333 0.00 0.00 43.50 5.69
361 362 2.795329 AGAATGAACTGCCGGTGAAAT 58.205 42.857 1.90 0.00 0.00 2.17
396 397 1.606668 GATCTTTTTGTGTGGCGTCCA 59.393 47.619 0.00 0.00 0.00 4.02
401 402 0.960861 TTTGTGTGGCGTCCAACACA 60.961 50.000 9.05 9.05 44.60 3.72
405 406 0.393132 TGTGGCGTCCAACACAAAGA 60.393 50.000 0.00 0.00 43.91 2.52
502 504 7.504924 AAAATTACTAAGTTAGTGTGCAGCA 57.495 32.000 23.14 0.00 39.81 4.41
511 513 1.368950 GTGTGCAGCACCTGAGAGA 59.631 57.895 23.06 0.00 42.10 3.10
556 558 2.893637 CGCATAGCTTCTAGGTGTTGT 58.106 47.619 0.00 0.00 0.00 3.32
666 668 2.012673 GGCTCTGCACATTGACTTAGG 58.987 52.381 0.00 0.00 0.00 2.69
752 754 2.686405 ACAGTGTAGTGTGACGTCTTCA 59.314 45.455 17.92 12.95 0.00 3.02
774 777 2.049156 GGGCGCCACTCAAAAAGC 60.049 61.111 30.85 1.84 0.00 3.51
779 782 0.947244 CGCCACTCAAAAAGCTCAGT 59.053 50.000 0.00 0.00 0.00 3.41
780 783 1.334869 CGCCACTCAAAAAGCTCAGTT 59.665 47.619 0.00 0.00 0.00 3.16
788 791 6.069684 CTCAAAAAGCTCAGTTGAGTGAAT 57.930 37.500 18.88 0.00 42.09 2.57
855 858 5.759763 AGACCAAAATTGTCAAATTTGCTCC 59.240 36.000 17.25 9.97 43.63 4.70
856 859 5.435291 ACCAAAATTGTCAAATTTGCTCCA 58.565 33.333 17.25 7.06 43.63 3.86
857 860 5.296531 ACCAAAATTGTCAAATTTGCTCCAC 59.703 36.000 17.25 7.02 43.63 4.02
858 861 5.277925 CCAAAATTGTCAAATTTGCTCCACC 60.278 40.000 17.25 0.00 43.63 4.61
859 862 4.686191 AATTGTCAAATTTGCTCCACCA 57.314 36.364 13.54 0.00 31.76 4.17
860 863 4.686191 ATTGTCAAATTTGCTCCACCAA 57.314 36.364 13.54 8.86 0.00 3.67
861 864 4.478206 TTGTCAAATTTGCTCCACCAAA 57.522 36.364 13.54 0.00 38.87 3.28
862 865 3.791245 TGTCAAATTTGCTCCACCAAAC 58.209 40.909 13.54 3.87 37.51 2.93
863 866 3.196469 TGTCAAATTTGCTCCACCAAACA 59.804 39.130 13.54 6.41 37.51 2.83
864 867 3.803778 GTCAAATTTGCTCCACCAAACAG 59.196 43.478 13.54 0.00 37.51 3.16
865 868 3.132925 CAAATTTGCTCCACCAAACAGG 58.867 45.455 5.01 0.00 45.67 4.00
868 871 0.469705 TTGCTCCACCAAACAGGCAT 60.470 50.000 0.00 0.00 43.14 4.40
884 887 4.853142 ATCACCTCGGGCGGGCTA 62.853 66.667 0.26 0.00 0.00 3.93
885 888 4.853142 TCACCTCGGGCGGGCTAT 62.853 66.667 0.26 0.00 0.00 2.97
950 953 0.108585 ATCTGTTCACGGCACTTGGT 59.891 50.000 0.00 0.00 0.00 3.67
951 954 0.813610 TCTGTTCACGGCACTTGGTG 60.814 55.000 0.00 0.00 36.51 4.17
952 955 0.813610 CTGTTCACGGCACTTGGTGA 60.814 55.000 1.57 0.00 41.13 4.02
953 956 1.092921 TGTTCACGGCACTTGGTGAC 61.093 55.000 1.57 0.00 42.43 3.67
954 957 0.814010 GTTCACGGCACTTGGTGACT 60.814 55.000 1.57 0.00 42.43 3.41
955 958 0.107410 TTCACGGCACTTGGTGACTT 60.107 50.000 1.57 0.00 42.43 3.01
956 959 0.813610 TCACGGCACTTGGTGACTTG 60.814 55.000 4.00 4.00 41.35 3.16
957 960 1.525995 ACGGCACTTGGTGACTTGG 60.526 57.895 1.57 0.00 39.83 3.61
968 971 2.047179 GACTTGGGTGGCGGACTC 60.047 66.667 0.00 0.00 0.00 3.36
988 991 5.076873 ACTCCATCTTGCTAGATCCTAGAC 58.923 45.833 7.75 0.00 39.11 2.59
1125 1140 2.430921 GCTGGTGTCGTCACGGAG 60.431 66.667 6.71 6.43 44.68 4.63
1126 1141 2.258591 CTGGTGTCGTCACGGAGG 59.741 66.667 6.71 0.00 44.68 4.30
1127 1142 3.916392 CTGGTGTCGTCACGGAGGC 62.916 68.421 6.71 0.00 44.68 4.70
1354 1470 6.710597 TCATACCTGAACTACTGACATACC 57.289 41.667 0.00 0.00 0.00 2.73
1363 1479 5.407407 ACTACTGACATACCAACCTCAAG 57.593 43.478 0.00 0.00 0.00 3.02
1370 1486 1.271856 TACCAACCTCAAGCATCCGA 58.728 50.000 0.00 0.00 0.00 4.55
1387 1504 4.492494 TCCGATATACTATCTGCCGGTA 57.508 45.455 1.90 0.00 37.06 4.02
1446 1563 6.148811 GGAGAATGTGAATCTTTTCCGTTACA 59.851 38.462 0.00 0.00 0.00 2.41
1463 1580 5.064707 CCGTTACATCGATTCAAACCTTGAT 59.935 40.000 0.00 0.00 39.84 2.57
1542 1715 0.399833 TTAGACCATGCCACACTGCA 59.600 50.000 0.00 0.00 46.94 4.41
1572 1745 9.226606 CACATTCTTTCCATTAACCTAACTACA 57.773 33.333 0.00 0.00 0.00 2.74
1634 1807 2.872245 CGGCAACACCAAGTATCCATAG 59.128 50.000 0.00 0.00 39.03 2.23
1646 1819 5.864418 AGTATCCATAGTCGCAAAAGGTA 57.136 39.130 0.00 0.00 0.00 3.08
1690 1946 9.760926 TGATACTCCTATAAGTAGCATTCTCAT 57.239 33.333 0.00 0.00 41.75 2.90
1692 1948 9.760926 ATACTCCTATAAGTAGCATTCTCATCA 57.239 33.333 0.00 0.00 35.31 3.07
1693 1949 8.121305 ACTCCTATAAGTAGCATTCTCATCAG 57.879 38.462 0.00 0.00 0.00 2.90
1694 1950 7.728083 ACTCCTATAAGTAGCATTCTCATCAGT 59.272 37.037 0.00 0.00 0.00 3.41
1695 1951 9.237187 CTCCTATAAGTAGCATTCTCATCAGTA 57.763 37.037 0.00 0.00 0.00 2.74
1696 1952 9.760926 TCCTATAAGTAGCATTCTCATCAGTAT 57.239 33.333 0.00 0.00 0.00 2.12
1729 1985 6.245115 TCAACTAACAGTCTAACGATTCGA 57.755 37.500 13.95 0.00 0.00 3.71
1774 2048 2.681344 GGACGGGTAGCCAACTTTTATG 59.319 50.000 12.31 0.00 0.00 1.90
1794 2069 7.706281 TTATGTTTCGTTGTAAAGTCGGTTA 57.294 32.000 0.00 0.00 0.00 2.85
1980 2441 5.984725 TGAGTACCAAGTTTTGAACTCTGA 58.015 37.500 17.32 4.44 41.91 3.27
2370 2832 3.581265 TTTAACGTGGAAAACCCCTCT 57.419 42.857 0.00 0.00 0.00 3.69
2533 2995 7.066374 GACTCAAGTCAAAACTGATCCATAC 57.934 40.000 5.28 0.00 44.18 2.39
2811 3273 5.363939 GTCCAGCTACTCATCTTAGCAATT 58.636 41.667 4.31 0.00 43.85 2.32
2884 3403 2.942804 TGGACAGATTTGTTCCTTGCA 58.057 42.857 0.00 0.00 37.76 4.08
2887 3406 2.622942 GACAGATTTGTTCCTTGCACCA 59.377 45.455 0.00 0.00 37.76 4.17
2891 3410 7.406405 ACAGATTTGTTCCTTGCACCACAAG 62.406 44.000 0.00 0.00 44.46 3.16
2918 3437 3.573110 GACCGGGTAGTATATGCACTCTT 59.427 47.826 6.32 0.00 0.00 2.85
2920 3439 4.407945 ACCGGGTAGTATATGCACTCTTTT 59.592 41.667 6.32 0.00 0.00 2.27
3200 3726 1.375396 CACGTCCTTCATCGGGCAA 60.375 57.895 0.00 0.00 0.00 4.52
3242 3768 0.900647 CCTCCCTCACCGACAACTCT 60.901 60.000 0.00 0.00 0.00 3.24
3254 3780 0.105408 ACAACTCTAACACCGGCGTT 59.895 50.000 13.24 13.24 0.00 4.84
3343 3869 2.279851 CACGCTGGACACGGTGAA 60.280 61.111 16.29 0.00 36.95 3.18
3356 3882 5.320549 ACACGGTGAATAAGTTCGAGTAT 57.679 39.130 16.29 0.00 37.15 2.12
3430 3956 0.820871 GAGTTCTGGACGCTGATCCT 59.179 55.000 0.00 0.00 39.75 3.24
3464 3990 3.755628 GGCTACGTGGTGGCGAGA 61.756 66.667 0.00 0.00 40.94 4.04
3552 4078 2.159490 TGGGTGCACTCATTCCCCA 61.159 57.895 17.47 10.45 43.02 4.96
3662 4188 1.191535 TCCAGTGGTACCCAGATTCG 58.808 55.000 10.07 0.00 32.34 3.34
3759 4311 8.936864 GTTAAATCTTAATCGGTGCTATATGCT 58.063 33.333 0.00 0.00 43.37 3.79
3766 4318 4.179926 TCGGTGCTATATGCTTGAGATC 57.820 45.455 0.00 0.00 43.37 2.75
3767 4319 3.829026 TCGGTGCTATATGCTTGAGATCT 59.171 43.478 0.00 0.00 43.37 2.75
3774 4326 9.645059 GTGCTATATGCTTGAGATCTTACATTA 57.355 33.333 0.00 0.00 43.37 1.90
3837 4389 7.369803 ACATGTTATGTCATTTGACTGAGAC 57.630 36.000 11.67 6.30 44.99 3.36
3839 4391 8.314021 ACATGTTATGTCATTTGACTGAGACTA 58.686 33.333 11.67 0.00 44.99 2.59
3840 4392 9.154847 CATGTTATGTCATTTGACTGAGACTAA 57.845 33.333 11.67 0.00 44.99 2.24
3841 4393 8.534333 TGTTATGTCATTTGACTGAGACTAAC 57.466 34.615 11.67 9.55 44.99 2.34
3843 4395 9.856488 GTTATGTCATTTGACTGAGACTAACTA 57.144 33.333 11.67 0.00 44.99 2.24
3845 4397 7.761038 TGTCATTTGACTGAGACTAACTAGA 57.239 36.000 11.67 0.00 44.99 2.43
3846 4398 8.354711 TGTCATTTGACTGAGACTAACTAGAT 57.645 34.615 11.67 0.00 44.99 1.98
3847 4399 8.807118 TGTCATTTGACTGAGACTAACTAGATT 58.193 33.333 11.67 0.00 44.99 2.40
3859 4411 9.917129 GAGACTAACTAGATTAAATCTTAGCCC 57.083 37.037 0.00 0.00 40.76 5.19
3860 4412 9.435570 AGACTAACTAGATTAAATCTTAGCCCA 57.564 33.333 0.00 0.00 40.76 5.36
3865 4417 9.508642 AACTAGATTAAATCTTAGCCCATTAGC 57.491 33.333 0.00 0.00 40.76 3.09
3866 4418 8.885346 ACTAGATTAAATCTTAGCCCATTAGCT 58.115 33.333 0.00 0.00 42.56 3.32
3883 4435 2.025589 GCTAAGAACTAGCCACACCC 57.974 55.000 0.00 0.00 46.46 4.61
3892 4444 3.910989 ACTAGCCACACCCTTTTTCTTT 58.089 40.909 0.00 0.00 0.00 2.52
3893 4445 3.636764 ACTAGCCACACCCTTTTTCTTTG 59.363 43.478 0.00 0.00 0.00 2.77
3894 4446 2.466846 AGCCACACCCTTTTTCTTTGT 58.533 42.857 0.00 0.00 0.00 2.83
3895 4447 2.837591 AGCCACACCCTTTTTCTTTGTT 59.162 40.909 0.00 0.00 0.00 2.83
3896 4448 3.263170 AGCCACACCCTTTTTCTTTGTTT 59.737 39.130 0.00 0.00 0.00 2.83
3902 4454 7.704899 CCACACCCTTTTTCTTTGTTTTACTAG 59.295 37.037 0.00 0.00 0.00 2.57
3903 4455 7.704899 CACACCCTTTTTCTTTGTTTTACTAGG 59.295 37.037 0.00 0.00 0.00 3.02
4052 4630 2.428085 GGAGAAGGACGAGGAGGGC 61.428 68.421 0.00 0.00 0.00 5.19
4115 4693 1.573108 ACACCTCCATCCTCGACAAT 58.427 50.000 0.00 0.00 0.00 2.71
4175 4753 2.423898 CCTCACCGACGCCAGGTAT 61.424 63.158 0.00 0.00 40.59 2.73
4215 4801 2.288788 CTACCAGAACGTACGCCCCC 62.289 65.000 16.72 1.82 0.00 5.40
4245 4831 4.275196 CGGATCTTGATTCTTGATGCATGT 59.725 41.667 2.46 0.00 0.00 3.21
4567 5179 2.227388 GAGGAAGACGACGGTTAGTTCA 59.773 50.000 0.00 0.00 0.00 3.18
4595 5217 4.724074 TTTGTCCTCCGTATTCGTATGT 57.276 40.909 0.00 0.00 35.01 2.29
4596 5218 5.833406 TTTGTCCTCCGTATTCGTATGTA 57.167 39.130 0.00 0.00 35.01 2.29
4598 5220 4.454678 TGTCCTCCGTATTCGTATGTACT 58.545 43.478 0.00 0.00 35.01 2.73
4623 5270 1.337635 TGATTTGGGTTGCGGAATTGC 60.338 47.619 0.00 0.00 0.00 3.56
4698 5345 3.414700 GTGCTGGACGCCAAGACG 61.415 66.667 0.35 0.00 38.05 4.18
4731 5378 2.383601 CCGGGCCAACTTCCCCTAT 61.384 63.158 4.39 0.00 40.75 2.57
4746 5393 2.041301 TATGGGCTGCCCTACGGT 60.041 61.111 35.80 19.25 45.70 4.83
4811 5507 1.135199 GTCAGCGAATCCAAGTCGGTA 60.135 52.381 1.10 0.00 46.62 4.02
4812 5508 1.754803 TCAGCGAATCCAAGTCGGTAT 59.245 47.619 1.10 0.00 46.62 2.73
4823 5519 2.724977 AGTCGGTATGGTCGCATATG 57.275 50.000 0.00 0.00 0.00 1.78
4826 5522 3.057736 AGTCGGTATGGTCGCATATGTAC 60.058 47.826 4.29 3.35 0.00 2.90
4848 5545 5.541766 CGCAGTACGTGTATGTCTATTTC 57.458 43.478 0.00 0.00 36.87 2.17
4852 5549 7.201410 CGCAGTACGTGTATGTCTATTTCTTTT 60.201 37.037 0.00 0.00 36.87 2.27
4853 5550 8.440833 GCAGTACGTGTATGTCTATTTCTTTTT 58.559 33.333 0.00 0.00 0.00 1.94
4900 5597 4.239304 TGTGTCGCTCGTTTTGTGTATAT 58.761 39.130 0.00 0.00 0.00 0.86
4901 5598 5.400703 TGTGTCGCTCGTTTTGTGTATATA 58.599 37.500 0.00 0.00 0.00 0.86
4902 5599 5.862860 TGTGTCGCTCGTTTTGTGTATATAA 59.137 36.000 0.00 0.00 0.00 0.98
4903 5600 6.034150 TGTGTCGCTCGTTTTGTGTATATAAG 59.966 38.462 0.00 0.00 0.00 1.73
4904 5601 5.517411 TGTCGCTCGTTTTGTGTATATAAGG 59.483 40.000 0.00 0.00 0.00 2.69
4917 5614 8.344939 TGTGTATATAAGGGGAAGGAAAAGAT 57.655 34.615 0.00 0.00 0.00 2.40
4923 5620 5.813965 AAGGGGAAGGAAAAGATTATGGA 57.186 39.130 0.00 0.00 0.00 3.41
4924 5621 5.813965 AGGGGAAGGAAAAGATTATGGAA 57.186 39.130 0.00 0.00 0.00 3.53
4925 5622 6.361304 AGGGGAAGGAAAAGATTATGGAAT 57.639 37.500 0.00 0.00 0.00 3.01
4926 5623 7.480222 AGGGGAAGGAAAAGATTATGGAATA 57.520 36.000 0.00 0.00 0.00 1.75
4927 5624 7.893482 AGGGGAAGGAAAAGATTATGGAATAA 58.107 34.615 0.00 0.00 44.01 1.40
4928 5625 8.351414 AGGGGAAGGAAAAGATTATGGAATAAA 58.649 33.333 0.00 0.00 42.96 1.40
4929 5626 9.159254 GGGGAAGGAAAAGATTATGGAATAAAT 57.841 33.333 0.00 0.00 42.96 1.40
4941 5638 9.769093 GATTATGGAATAAATAAATCCCGAACG 57.231 33.333 0.00 0.00 42.96 3.95
4942 5639 8.905660 TTATGGAATAAATAAATCCCGAACGA 57.094 30.769 0.00 0.00 35.49 3.85
4943 5640 7.996098 ATGGAATAAATAAATCCCGAACGAT 57.004 32.000 0.00 0.00 32.01 3.73
4944 5641 7.811117 TGGAATAAATAAATCCCGAACGATT 57.189 32.000 0.00 0.00 33.84 3.34
4945 5642 7.867752 TGGAATAAATAAATCCCGAACGATTC 58.132 34.615 0.00 0.00 31.14 2.52
4960 5657 5.560966 AACGATTCGGAATTTAAGCATGT 57.439 34.783 11.29 0.00 0.00 3.21
4961 5658 5.156804 ACGATTCGGAATTTAAGCATGTC 57.843 39.130 11.29 0.00 0.00 3.06
4962 5659 4.634004 ACGATTCGGAATTTAAGCATGTCA 59.366 37.500 11.29 0.00 0.00 3.58
4963 5660 4.963953 CGATTCGGAATTTAAGCATGTCAC 59.036 41.667 4.47 0.00 0.00 3.67
4964 5661 4.695217 TTCGGAATTTAAGCATGTCACC 57.305 40.909 0.00 0.00 0.00 4.02
4965 5662 3.013921 TCGGAATTTAAGCATGTCACCC 58.986 45.455 0.00 0.00 0.00 4.61
4966 5663 2.099098 CGGAATTTAAGCATGTCACCCC 59.901 50.000 0.00 0.00 0.00 4.95
4967 5664 2.099098 GGAATTTAAGCATGTCACCCCG 59.901 50.000 0.00 0.00 0.00 5.73
4968 5665 2.799126 ATTTAAGCATGTCACCCCGA 57.201 45.000 0.00 0.00 0.00 5.14
4969 5666 2.570415 TTTAAGCATGTCACCCCGAA 57.430 45.000 0.00 0.00 0.00 4.30
4970 5667 1.816074 TTAAGCATGTCACCCCGAAC 58.184 50.000 0.00 0.00 0.00 3.95
4971 5668 0.390603 TAAGCATGTCACCCCGAACG 60.391 55.000 0.00 0.00 0.00 3.95
4972 5669 2.358247 GCATGTCACCCCGAACGT 60.358 61.111 0.00 0.00 0.00 3.99
4973 5670 1.964373 GCATGTCACCCCGAACGTT 60.964 57.895 0.00 0.00 0.00 3.99
4974 5671 1.512156 GCATGTCACCCCGAACGTTT 61.512 55.000 0.46 0.00 0.00 3.60
4975 5672 0.948678 CATGTCACCCCGAACGTTTT 59.051 50.000 0.46 0.00 0.00 2.43
4976 5673 1.335496 CATGTCACCCCGAACGTTTTT 59.665 47.619 0.46 0.00 0.00 1.94
5003 5700 2.256117 AACTTTAGTTGCTGCGAGGT 57.744 45.000 0.00 0.00 36.80 3.85
5004 5701 1.512926 ACTTTAGTTGCTGCGAGGTG 58.487 50.000 0.00 0.00 0.00 4.00
5005 5702 0.798776 CTTTAGTTGCTGCGAGGTGG 59.201 55.000 0.00 0.00 0.00 4.61
5006 5703 1.234615 TTTAGTTGCTGCGAGGTGGC 61.235 55.000 0.00 0.00 0.00 5.01
5007 5704 2.390306 TTAGTTGCTGCGAGGTGGCA 62.390 55.000 0.00 0.00 41.45 4.92
5008 5705 2.390306 TAGTTGCTGCGAGGTGGCAA 62.390 55.000 0.00 0.00 43.39 4.52
5009 5706 3.286751 TTGCTGCGAGGTGGCAAC 61.287 61.111 0.00 0.00 43.39 4.17
5010 5707 3.772853 TTGCTGCGAGGTGGCAACT 62.773 57.895 3.75 3.75 43.39 3.16
5011 5708 2.980233 GCTGCGAGGTGGCAACTT 60.980 61.111 6.46 0.00 43.39 2.66
5012 5709 2.555547 GCTGCGAGGTGGCAACTTT 61.556 57.895 6.46 0.00 43.39 2.66
5013 5710 1.234615 GCTGCGAGGTGGCAACTTTA 61.235 55.000 6.46 0.00 43.39 1.85
5014 5711 0.798776 CTGCGAGGTGGCAACTTTAG 59.201 55.000 6.46 2.61 43.39 1.85
5015 5712 0.107831 TGCGAGGTGGCAACTTTAGT 59.892 50.000 6.46 0.00 40.59 2.24
5016 5713 1.235724 GCGAGGTGGCAACTTTAGTT 58.764 50.000 6.46 0.00 39.12 2.24
5046 5743 8.506140 ACACATGACAATTTTATTTCAGTTCG 57.494 30.769 0.00 0.00 0.00 3.95
5047 5744 8.349245 ACACATGACAATTTTATTTCAGTTCGA 58.651 29.630 0.00 0.00 0.00 3.71
5048 5745 9.345517 CACATGACAATTTTATTTCAGTTCGAT 57.654 29.630 0.00 0.00 0.00 3.59
5049 5746 9.912634 ACATGACAATTTTATTTCAGTTCGATT 57.087 25.926 0.00 0.00 0.00 3.34
5072 5769 6.998968 TTTTTGTCAGAAAATTGCCATGTT 57.001 29.167 0.00 0.00 0.00 2.71
5073 5770 6.998968 TTTTGTCAGAAAATTGCCATGTTT 57.001 29.167 0.00 0.00 0.00 2.83
5074 5771 6.998968 TTTGTCAGAAAATTGCCATGTTTT 57.001 29.167 0.00 0.00 0.00 2.43
5075 5772 5.987777 TGTCAGAAAATTGCCATGTTTTG 57.012 34.783 0.00 0.00 0.00 2.44
5076 5773 5.426504 TGTCAGAAAATTGCCATGTTTTGT 58.573 33.333 0.00 0.00 0.00 2.83
5077 5774 5.523188 TGTCAGAAAATTGCCATGTTTTGTC 59.477 36.000 0.00 0.00 0.00 3.18
5078 5775 5.523188 GTCAGAAAATTGCCATGTTTTGTCA 59.477 36.000 0.00 0.00 0.00 3.58
5079 5776 6.036953 GTCAGAAAATTGCCATGTTTTGTCAA 59.963 34.615 0.00 0.00 0.00 3.18
5080 5777 6.036953 TCAGAAAATTGCCATGTTTTGTCAAC 59.963 34.615 0.00 0.00 0.00 3.18
5081 5778 5.879223 AGAAAATTGCCATGTTTTGTCAACA 59.121 32.000 0.00 0.00 34.31 3.33
5082 5779 6.373774 AGAAAATTGCCATGTTTTGTCAACAA 59.626 30.769 0.00 0.00 33.42 2.83
5083 5780 5.482686 AATTGCCATGTTTTGTCAACAAC 57.517 34.783 0.00 0.00 35.28 3.32
5084 5781 2.534298 TGCCATGTTTTGTCAACAACG 58.466 42.857 0.00 0.00 35.28 4.10
5085 5782 1.257675 GCCATGTTTTGTCAACAACGC 59.742 47.619 0.00 0.00 35.28 4.84
5086 5783 1.857837 CCATGTTTTGTCAACAACGCC 59.142 47.619 0.00 0.00 35.28 5.68
5087 5784 2.481104 CCATGTTTTGTCAACAACGCCT 60.481 45.455 0.00 0.00 35.28 5.52
5088 5785 3.186119 CATGTTTTGTCAACAACGCCTT 58.814 40.909 0.00 0.00 35.28 4.35
5089 5786 2.600731 TGTTTTGTCAACAACGCCTTG 58.399 42.857 0.00 0.00 35.28 3.61
5090 5787 2.229062 TGTTTTGTCAACAACGCCTTGA 59.771 40.909 2.26 0.00 35.28 3.02
5091 5788 3.119316 TGTTTTGTCAACAACGCCTTGAT 60.119 39.130 2.26 0.00 35.28 2.57
5092 5789 3.791973 TTTGTCAACAACGCCTTGATT 57.208 38.095 2.26 0.00 35.28 2.57
5093 5790 4.902443 TTTGTCAACAACGCCTTGATTA 57.098 36.364 2.26 0.00 35.28 1.75
5094 5791 4.902443 TTGTCAACAACGCCTTGATTAA 57.098 36.364 2.26 0.00 30.46 1.40
5095 5792 4.902443 TGTCAACAACGCCTTGATTAAA 57.098 36.364 2.26 0.00 30.46 1.52
5096 5793 4.854399 TGTCAACAACGCCTTGATTAAAG 58.146 39.130 2.26 0.00 35.47 1.85
5097 5794 4.336993 TGTCAACAACGCCTTGATTAAAGT 59.663 37.500 2.26 0.00 33.66 2.66
5098 5795 5.163602 TGTCAACAACGCCTTGATTAAAGTT 60.164 36.000 2.26 0.00 33.66 2.66
5099 5796 5.173131 GTCAACAACGCCTTGATTAAAGTTG 59.827 40.000 2.26 4.81 42.99 3.16
5100 5797 4.911514 ACAACGCCTTGATTAAAGTTGT 57.088 36.364 6.02 6.02 44.67 3.32
5101 5798 4.855531 ACAACGCCTTGATTAAAGTTGTC 58.144 39.130 6.02 0.00 45.89 3.18
5102 5799 4.336993 ACAACGCCTTGATTAAAGTTGTCA 59.663 37.500 6.02 0.00 45.89 3.58
5103 5800 5.009610 ACAACGCCTTGATTAAAGTTGTCAT 59.990 36.000 6.02 0.00 45.89 3.06
5104 5801 5.046910 ACGCCTTGATTAAAGTTGTCATG 57.953 39.130 0.00 0.00 33.66 3.07
5105 5802 4.759693 ACGCCTTGATTAAAGTTGTCATGA 59.240 37.500 0.00 0.00 33.66 3.07
5106 5803 5.240623 ACGCCTTGATTAAAGTTGTCATGAA 59.759 36.000 0.00 0.00 33.66 2.57
5107 5804 6.148948 CGCCTTGATTAAAGTTGTCATGAAA 58.851 36.000 0.00 0.00 33.66 2.69
5108 5805 6.640499 CGCCTTGATTAAAGTTGTCATGAAAA 59.360 34.615 0.00 0.00 33.66 2.29
5109 5806 7.168972 CGCCTTGATTAAAGTTGTCATGAAAAA 59.831 33.333 0.00 0.00 33.66 1.94
5132 5829 9.933723 AAAAAGTTCAGATTAGCATGCTTAAAT 57.066 25.926 28.02 20.20 0.00 1.40
5133 5830 9.933723 AAAAGTTCAGATTAGCATGCTTAAATT 57.066 25.926 28.02 12.71 0.00 1.82
5134 5831 9.578439 AAAGTTCAGATTAGCATGCTTAAATTC 57.422 29.630 28.02 13.50 0.00 2.17
5135 5832 8.517062 AGTTCAGATTAGCATGCTTAAATTCT 57.483 30.769 28.02 15.53 0.00 2.40
5136 5833 8.404000 AGTTCAGATTAGCATGCTTAAATTCTG 58.596 33.333 28.02 24.80 0.00 3.02
5137 5834 8.400947 GTTCAGATTAGCATGCTTAAATTCTGA 58.599 33.333 28.02 26.39 0.00 3.27
5138 5835 8.510243 TCAGATTAGCATGCTTAAATTCTGAA 57.490 30.769 28.02 10.99 0.00 3.02
5139 5836 8.400947 TCAGATTAGCATGCTTAAATTCTGAAC 58.599 33.333 28.02 7.29 0.00 3.18
5140 5837 7.375280 CAGATTAGCATGCTTAAATTCTGAACG 59.625 37.037 28.02 3.95 0.00 3.95
5141 5838 6.494893 TTAGCATGCTTAAATTCTGAACGT 57.505 33.333 28.02 0.00 0.00 3.99
5142 5839 5.376854 AGCATGCTTAAATTCTGAACGTT 57.623 34.783 16.30 0.00 0.00 3.99
5143 5840 5.393962 AGCATGCTTAAATTCTGAACGTTC 58.606 37.500 21.42 21.42 0.00 3.95
5144 5841 4.260656 GCATGCTTAAATTCTGAACGTTCG 59.739 41.667 22.48 16.77 0.00 3.95
5145 5842 4.398549 TGCTTAAATTCTGAACGTTCGG 57.601 40.909 27.75 27.75 34.85 4.30
5146 5843 3.187637 TGCTTAAATTCTGAACGTTCGGG 59.812 43.478 31.38 21.86 34.32 5.14
5147 5844 3.434299 GCTTAAATTCTGAACGTTCGGGA 59.566 43.478 31.38 26.38 34.32 5.14
5148 5845 4.668431 GCTTAAATTCTGAACGTTCGGGAC 60.668 45.833 31.38 10.86 34.32 4.46
5149 5846 2.833631 AATTCTGAACGTTCGGGACT 57.166 45.000 31.38 15.26 34.32 3.85
5150 5847 2.833631 ATTCTGAACGTTCGGGACTT 57.166 45.000 31.38 11.13 34.32 3.01
5151 5848 3.947910 ATTCTGAACGTTCGGGACTTA 57.052 42.857 31.38 13.41 34.32 2.24
5152 5849 3.947910 TTCTGAACGTTCGGGACTTAT 57.052 42.857 31.38 0.00 34.32 1.73
5153 5850 3.947910 TCTGAACGTTCGGGACTTATT 57.052 42.857 31.38 0.00 34.32 1.40
5154 5851 3.581755 TCTGAACGTTCGGGACTTATTG 58.418 45.455 31.38 9.02 34.32 1.90
5155 5852 3.256383 TCTGAACGTTCGGGACTTATTGA 59.744 43.478 31.38 10.68 34.32 2.57
5156 5853 3.581755 TGAACGTTCGGGACTTATTGAG 58.418 45.455 22.48 0.00 0.00 3.02
5157 5854 2.667473 ACGTTCGGGACTTATTGAGG 57.333 50.000 0.00 0.00 0.00 3.86
5158 5855 1.897802 ACGTTCGGGACTTATTGAGGT 59.102 47.619 0.00 0.00 0.00 3.85
5159 5856 2.094338 ACGTTCGGGACTTATTGAGGTC 60.094 50.000 0.00 0.00 0.00 3.85
5194 5891 2.923121 AGAATGTCCGTGCATTGCTAT 58.077 42.857 10.49 0.00 38.98 2.97
5277 5974 7.020827 TCAAAACTCATTTCTCCCTCATACT 57.979 36.000 0.00 0.00 0.00 2.12
5287 5984 2.441001 CTCCCTCATACTTCCAGGCATT 59.559 50.000 0.00 0.00 0.00 3.56
5291 5988 4.272489 CCTCATACTTCCAGGCATTTTCA 58.728 43.478 0.00 0.00 0.00 2.69
5309 6006 1.699083 TCAGACATCAAACAGGAGCCA 59.301 47.619 0.00 0.00 0.00 4.75
5315 6012 0.473755 TCAAACAGGAGCCAAGCAGA 59.526 50.000 0.00 0.00 0.00 4.26
5362 6059 2.107552 AGTCCGGGTTTCTCAAATCCAA 59.892 45.455 0.00 0.00 41.97 3.53
5378 6075 8.592529 TCAAATCCAAATCATATGTGGAGAAA 57.407 30.769 16.21 3.16 44.45 2.52
5424 6121 4.631377 CGACATGTTATCTCCAACACACAT 59.369 41.667 0.00 0.00 41.02 3.21
5435 6132 1.134877 CAACACACATGCCCAACACAA 60.135 47.619 0.00 0.00 0.00 3.33
5436 6133 1.189752 ACACACATGCCCAACACAAA 58.810 45.000 0.00 0.00 0.00 2.83
5437 6134 1.552337 ACACACATGCCCAACACAAAA 59.448 42.857 0.00 0.00 0.00 2.44
5438 6135 2.027745 ACACACATGCCCAACACAAAAA 60.028 40.909 0.00 0.00 0.00 1.94
5461 6158 1.178534 AAAACCACCCCATGACGCAG 61.179 55.000 0.00 0.00 0.00 5.18
5496 6193 1.307084 ACTACCCTCCCCTTCCTGC 60.307 63.158 0.00 0.00 0.00 4.85
5505 6202 2.305927 CTCCCCTTCCTGCTTAGTTTCA 59.694 50.000 0.00 0.00 0.00 2.69
5513 6210 3.004629 TCCTGCTTAGTTTCACGTCGTAA 59.995 43.478 0.00 0.00 0.00 3.18
5517 6214 2.330231 TAGTTTCACGTCGTAACCGG 57.670 50.000 0.00 0.00 33.95 5.28
5533 6230 1.002087 ACCGGACATTTCTCACTGGAC 59.998 52.381 9.46 0.00 33.52 4.02
5539 6236 1.065126 CATTTCTCACTGGACCCCCTC 60.065 57.143 0.00 0.00 0.00 4.30
5570 6269 2.803155 GATGGCGCACCTCACCTTCA 62.803 60.000 10.83 0.00 36.63 3.02
5579 6278 0.962356 CCTCACCTTCACCATGGCAC 60.962 60.000 13.04 0.00 0.00 5.01
5593 6292 0.252881 TGGCACCCTCTCTCCTTCAT 60.253 55.000 0.00 0.00 0.00 2.57
5596 6295 1.414550 GCACCCTCTCTCCTTCATACC 59.585 57.143 0.00 0.00 0.00 2.73
5617 6316 2.033049 CGTACTTCCCCATAGACAGTCG 59.967 54.545 0.00 0.00 0.00 4.18
5663 6366 1.594293 CTCCCGTCGTGTTTGTGCT 60.594 57.895 0.00 0.00 0.00 4.40
5686 6389 2.746277 GCCACCACCATCCACGTC 60.746 66.667 0.00 0.00 0.00 4.34
5700 6403 5.692204 CCATCCACGTCTTATAAAGTAGCAG 59.308 44.000 0.00 0.00 0.00 4.24
5720 6423 5.819901 AGCAGAATTATTCCACTAAGACAGC 59.180 40.000 0.78 0.00 0.00 4.40
5756 6459 0.552848 ACCCCATCCACATCCACATC 59.447 55.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.437289 AAATGAAGATTGTTGCGAACTGA 57.563 34.783 0.00 0.00 0.00 3.41
5 6 3.740321 GCCAAAAATGAAGATTGTTGCGA 59.260 39.130 0.00 0.00 35.98 5.10
6 7 3.120580 GGCCAAAAATGAAGATTGTTGCG 60.121 43.478 0.00 0.00 35.98 4.85
7 8 3.189080 GGGCCAAAAATGAAGATTGTTGC 59.811 43.478 4.39 0.00 35.98 4.17
8 9 3.432933 CGGGCCAAAAATGAAGATTGTTG 59.567 43.478 4.39 0.00 36.77 3.33
9 10 3.556843 CCGGGCCAAAAATGAAGATTGTT 60.557 43.478 4.39 0.00 0.00 2.83
10 11 2.028203 CCGGGCCAAAAATGAAGATTGT 60.028 45.455 4.39 0.00 0.00 2.71
11 12 2.620242 CCGGGCCAAAAATGAAGATTG 58.380 47.619 4.39 0.00 0.00 2.67
12 13 1.066215 GCCGGGCCAAAAATGAAGATT 60.066 47.619 8.12 0.00 0.00 2.40
13 14 0.536724 GCCGGGCCAAAAATGAAGAT 59.463 50.000 8.12 0.00 0.00 2.40
14 15 0.829602 TGCCGGGCCAAAAATGAAGA 60.830 50.000 17.97 0.00 0.00 2.87
15 16 0.390209 CTGCCGGGCCAAAAATGAAG 60.390 55.000 17.97 0.00 0.00 3.02
16 17 0.829602 TCTGCCGGGCCAAAAATGAA 60.830 50.000 17.97 0.00 0.00 2.57
17 18 0.829602 TTCTGCCGGGCCAAAAATGA 60.830 50.000 17.97 0.61 0.00 2.57
18 19 0.034616 TTTCTGCCGGGCCAAAAATG 59.965 50.000 17.97 0.00 0.00 2.32
19 20 0.761802 TTTTCTGCCGGGCCAAAAAT 59.238 45.000 17.97 0.00 0.00 1.82
20 21 0.179070 GTTTTCTGCCGGGCCAAAAA 60.179 50.000 21.18 20.08 0.00 1.94
21 22 1.443828 GTTTTCTGCCGGGCCAAAA 59.556 52.632 17.97 17.69 0.00 2.44
22 23 2.503382 GGTTTTCTGCCGGGCCAAA 61.503 57.895 17.97 12.61 0.00 3.28
23 24 2.915137 GGTTTTCTGCCGGGCCAA 60.915 61.111 17.97 6.47 0.00 4.52
24 25 4.211330 TGGTTTTCTGCCGGGCCA 62.211 61.111 17.97 1.73 0.00 5.36
25 26 3.373565 CTGGTTTTCTGCCGGGCC 61.374 66.667 17.97 0.00 0.00 5.80
26 27 4.056125 GCTGGTTTTCTGCCGGGC 62.056 66.667 13.32 13.32 34.72 6.13
27 28 3.737172 CGCTGGTTTTCTGCCGGG 61.737 66.667 2.18 0.00 37.06 5.73
28 29 2.070654 AAACGCTGGTTTTCTGCCGG 62.071 55.000 0.00 0.00 43.69 6.13
29 30 0.589223 TAAACGCTGGTTTTCTGCCG 59.411 50.000 0.00 0.00 43.69 5.69
30 31 4.163552 GTTATAAACGCTGGTTTTCTGCC 58.836 43.478 0.00 0.00 43.69 4.85
31 32 4.082949 AGGTTATAAACGCTGGTTTTCTGC 60.083 41.667 0.00 0.00 43.69 4.26
32 33 5.622770 AGGTTATAAACGCTGGTTTTCTG 57.377 39.130 0.00 0.00 43.69 3.02
33 34 6.002082 AGAAGGTTATAAACGCTGGTTTTCT 58.998 36.000 0.00 0.00 43.69 2.52
34 35 6.250344 AGAAGGTTATAAACGCTGGTTTTC 57.750 37.500 0.00 0.00 43.69 2.29
35 36 6.644248 AAGAAGGTTATAAACGCTGGTTTT 57.356 33.333 0.00 0.00 43.69 2.43
37 38 6.370718 CAGTAAGAAGGTTATAAACGCTGGTT 59.629 38.462 0.00 0.00 38.22 3.67
38 39 5.873164 CAGTAAGAAGGTTATAAACGCTGGT 59.127 40.000 0.00 0.00 0.00 4.00
39 40 6.103997 TCAGTAAGAAGGTTATAAACGCTGG 58.896 40.000 0.00 0.00 0.00 4.85
40 41 7.772332 ATCAGTAAGAAGGTTATAAACGCTG 57.228 36.000 0.00 0.00 0.00 5.18
48 49 8.958119 TGCGAAAATATCAGTAAGAAGGTTAT 57.042 30.769 0.00 0.00 0.00 1.89
49 50 8.958119 ATGCGAAAATATCAGTAAGAAGGTTA 57.042 30.769 0.00 0.00 0.00 2.85
50 51 7.865706 ATGCGAAAATATCAGTAAGAAGGTT 57.134 32.000 0.00 0.00 0.00 3.50
59 60 9.203421 TCGACATTTATATGCGAAAATATCAGT 57.797 29.630 9.08 0.00 37.36 3.41
60 61 9.465494 GTCGACATTTATATGCGAAAATATCAG 57.535 33.333 11.55 0.00 39.85 2.90
61 62 8.159709 CGTCGACATTTATATGCGAAAATATCA 58.840 33.333 17.16 0.00 39.85 2.15
62 63 7.630987 CCGTCGACATTTATATGCGAAAATATC 59.369 37.037 17.16 0.00 39.85 1.63
63 64 7.412563 CCCGTCGACATTTATATGCGAAAATAT 60.413 37.037 17.16 0.00 39.85 1.28
64 65 6.128769 CCCGTCGACATTTATATGCGAAAATA 60.129 38.462 17.16 0.00 39.85 1.40
65 66 5.333798 CCCGTCGACATTTATATGCGAAAAT 60.334 40.000 17.16 0.00 39.85 1.82
66 67 4.025563 CCCGTCGACATTTATATGCGAAAA 60.026 41.667 17.16 0.00 39.85 2.29
67 68 3.491639 CCCGTCGACATTTATATGCGAAA 59.508 43.478 17.16 0.00 39.85 3.46
68 69 3.054166 CCCGTCGACATTTATATGCGAA 58.946 45.455 17.16 0.00 39.85 4.70
69 70 2.668250 CCCGTCGACATTTATATGCGA 58.332 47.619 17.16 7.98 37.69 5.10
70 71 1.126113 GCCCGTCGACATTTATATGCG 59.874 52.381 17.16 0.00 35.03 4.73
109 110 3.935993 CCAGGTGGTAGTTGTCCAG 57.064 57.895 0.00 0.00 35.49 3.86
157 158 0.594602 GTCATGTTGCAGCAGCTTGA 59.405 50.000 19.85 19.85 42.74 3.02
180 181 1.945355 GCCATGTTTGTTTGCATCCCC 60.945 52.381 0.00 0.00 0.00 4.81
184 185 2.038689 TGGATGCCATGTTTGTTTGCAT 59.961 40.909 3.42 3.42 44.74 3.96
249 250 4.427312 GACGTACGTAATGAAATGGACCT 58.573 43.478 22.87 0.00 0.00 3.85
251 252 3.241322 CGGACGTACGTAATGAAATGGAC 59.759 47.826 22.87 3.74 0.00 4.02
255 256 2.855963 CTGCGGACGTACGTAATGAAAT 59.144 45.455 22.87 0.00 35.98 2.17
281 282 2.049248 GTTTGGTGGTGGCGCATG 60.049 61.111 10.83 0.00 0.00 4.06
295 296 8.835439 AGATTAAATTTGTCAATTTTGCCGTTT 58.165 25.926 13.29 0.00 39.19 3.60
296 297 8.281893 CAGATTAAATTTGTCAATTTTGCCGTT 58.718 29.630 13.29 0.00 39.19 4.44
327 328 9.468532 GGCAGTTCATTCTATGATTTAATTTCC 57.531 33.333 0.00 0.00 39.39 3.13
361 362 5.957842 AAAAGATCAGCCGTGTGAAATAA 57.042 34.783 0.00 0.00 0.00 1.40
396 397 2.319136 TAGTGTGGCGTCTTTGTGTT 57.681 45.000 0.00 0.00 0.00 3.32
502 504 1.075970 TGGCGCCTATCTCTCAGGT 60.076 57.895 29.70 0.00 35.45 4.00
511 513 2.317040 ACTGTATAGTGTGGCGCCTAT 58.683 47.619 29.70 18.85 35.34 2.57
539 541 6.321690 CCACTAGTACAACACCTAGAAGCTAT 59.678 42.308 0.00 0.00 0.00 2.97
551 553 4.409718 TGAAGCAACCACTAGTACAACA 57.590 40.909 0.00 0.00 0.00 3.33
556 558 7.172532 CACTACAAAATGAAGCAACCACTAGTA 59.827 37.037 0.00 0.00 0.00 1.82
666 668 1.749063 CCCCGGACTGCCTAAAAATTC 59.251 52.381 0.73 0.00 0.00 2.17
690 692 3.277211 TACACGTCTGGCCAGCGTC 62.277 63.158 36.15 24.33 38.44 5.19
702 704 2.258591 CTGACAGGCGCTACACGT 59.741 61.111 7.64 0.00 46.11 4.49
752 754 3.545124 TTTGAGTGGCGCCCGACAT 62.545 57.895 26.77 4.59 34.62 3.06
797 800 8.710835 AATCGTTTCACAAAATAAACTGGTTT 57.289 26.923 4.15 4.15 34.21 3.27
800 803 8.346476 TGAAATCGTTTCACAAAATAAACTGG 57.654 30.769 8.47 0.00 44.21 4.00
818 821 4.764679 TTTTGGTCTGTGGATGAAATCG 57.235 40.909 0.00 0.00 46.86 3.34
834 837 5.277925 GGTGGAGCAAATTTGACAATTTTGG 60.278 40.000 25.52 14.21 40.09 3.28
868 871 2.725127 ATATAGCCCGCCCGAGGTGA 62.725 60.000 5.20 0.00 34.74 4.02
884 887 7.071698 CCTGCTGGTGAAGGGATGTATATATAT 59.928 40.741 0.51 0.00 35.24 0.86
885 888 6.384015 CCTGCTGGTGAAGGGATGTATATATA 59.616 42.308 0.51 0.00 35.24 0.86
926 929 0.951558 GTGCCGTGAACAGATTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
950 953 2.847234 AGTCCGCCACCCAAGTCA 60.847 61.111 0.00 0.00 0.00 3.41
951 954 2.047179 GAGTCCGCCACCCAAGTC 60.047 66.667 0.00 0.00 0.00 3.01
952 955 3.637273 GGAGTCCGCCACCCAAGT 61.637 66.667 0.00 0.00 0.00 3.16
953 956 2.876368 GATGGAGTCCGCCACCCAAG 62.876 65.000 4.30 0.00 41.56 3.61
954 957 2.933287 ATGGAGTCCGCCACCCAA 60.933 61.111 4.30 0.00 41.56 4.12
955 958 3.399181 GATGGAGTCCGCCACCCA 61.399 66.667 4.30 0.00 41.56 4.51
956 959 2.670148 AAGATGGAGTCCGCCACCC 61.670 63.158 4.30 0.00 41.56 4.61
957 960 1.450312 CAAGATGGAGTCCGCCACC 60.450 63.158 4.30 0.00 41.56 4.61
968 971 5.798125 TTGTCTAGGATCTAGCAAGATGG 57.202 43.478 0.00 0.00 42.73 3.51
988 991 0.877071 GGAGGCATGGCGATGTATTG 59.123 55.000 14.30 0.00 31.50 1.90
1354 1470 4.887748 AGTATATCGGATGCTTGAGGTTG 58.112 43.478 0.00 0.00 0.00 3.77
1363 1479 3.551046 CCGGCAGATAGTATATCGGATGC 60.551 52.174 0.00 2.19 38.42 3.91
1370 1486 4.948621 GTGGACTACCGGCAGATAGTATAT 59.051 45.833 9.21 0.00 39.42 0.86
1387 1504 0.320697 GGCTAACCTTCACGTGGACT 59.679 55.000 17.00 0.00 0.00 3.85
1446 1563 8.671921 GCATATATGATCAAGGTTTGAATCGAT 58.328 33.333 17.10 0.00 43.95 3.59
1506 1679 7.997107 TGGTCTAAAAGTACTTATACGCATG 57.003 36.000 8.92 0.00 36.33 4.06
1609 1782 2.627945 GATACTTGGTGTTGCCGATCA 58.372 47.619 0.00 0.00 41.21 2.92
1634 1807 5.103290 TGTCTCAATTTACCTTTTGCGAC 57.897 39.130 0.00 0.00 37.82 5.19
1736 1992 2.160417 CGTCCTCGTTAGACCGTAAGTT 59.840 50.000 0.00 0.00 0.00 2.66
1738 1994 1.063174 CCGTCCTCGTTAGACCGTAAG 59.937 57.143 0.00 0.00 35.01 2.34
1739 1995 1.086696 CCGTCCTCGTTAGACCGTAA 58.913 55.000 0.00 0.00 35.01 3.18
1740 1996 0.744414 CCCGTCCTCGTTAGACCGTA 60.744 60.000 0.00 0.00 35.01 4.02
1743 1999 1.020437 CTACCCGTCCTCGTTAGACC 58.980 60.000 0.00 0.00 35.01 3.85
1774 2048 5.231991 TCACTAACCGACTTTACAACGAAAC 59.768 40.000 0.00 0.00 0.00 2.78
1794 2069 3.347216 ACTAAATTGGATGCGCTTCACT 58.653 40.909 22.93 5.77 0.00 3.41
1826 2107 2.904131 CCTCCTTCCTCCTTCGCC 59.096 66.667 0.00 0.00 0.00 5.54
1954 2415 7.656137 TCAGAGTTCAAAACTTGGTACTCATAC 59.344 37.037 17.17 0.00 43.03 2.39
2267 2729 7.175797 TCTATCAAAGAGAACCACTGTCTCTA 58.824 38.462 4.47 0.00 39.65 2.43
2302 2764 9.933240 ATTTGATCCTTTTCATTCTCTATTCCT 57.067 29.630 0.00 0.00 0.00 3.36
2320 2782 7.601856 TGTGTTCCTTTGTGATTATTTGATCC 58.398 34.615 0.00 0.00 0.00 3.36
2331 2793 6.970043 CGTTAAAATCTTGTGTTCCTTTGTGA 59.030 34.615 0.00 0.00 0.00 3.58
2336 2798 5.591067 TCCACGTTAAAATCTTGTGTTCCTT 59.409 36.000 0.00 0.00 0.00 3.36
2384 2846 4.615834 TTGGCGCGCGTGGTTTTC 62.616 61.111 32.35 12.47 0.00 2.29
2512 2974 4.935205 CGGTATGGATCAGTTTTGACTTGA 59.065 41.667 0.00 0.00 35.83 3.02
2519 2981 7.201821 GGATCAATTTCGGTATGGATCAGTTTT 60.202 37.037 13.57 0.00 36.91 2.43
2528 2990 5.412594 CCATAGTGGATCAATTTCGGTATGG 59.587 44.000 0.00 0.00 40.96 2.74
2533 2995 2.554032 GGCCATAGTGGATCAATTTCGG 59.446 50.000 0.00 0.00 40.96 4.30
2605 3067 9.912634 ACTATTTGTTAAGTTGTGATCCAAATG 57.087 29.630 0.00 0.00 34.07 2.32
2685 3147 2.192263 ACACCACCAACCCACATTTTT 58.808 42.857 0.00 0.00 0.00 1.94
2811 3273 6.101150 ACAACTTATCTAACCATGGGCTGATA 59.899 38.462 18.09 15.93 0.00 2.15
2853 3372 9.788960 GGAACAAATCTGTCCAACTTATAATTC 57.211 33.333 0.00 0.00 33.45 2.17
2884 3403 0.476771 ACCCGGTCAATTCTTGTGGT 59.523 50.000 0.00 0.00 0.00 4.16
2887 3406 6.522054 CATATACTACCCGGTCAATTCTTGT 58.478 40.000 0.00 0.00 0.00 3.16
2891 3410 4.689345 GTGCATATACTACCCGGTCAATTC 59.311 45.833 0.00 0.00 0.00 2.17
2898 3417 4.602340 AAAGAGTGCATATACTACCCGG 57.398 45.455 0.00 0.00 0.00 5.73
2924 3443 9.113838 GAGAGAGTGCATATAAATTTCTCCAAA 57.886 33.333 0.00 0.00 32.13 3.28
2926 3445 7.930325 CAGAGAGAGTGCATATAAATTTCTCCA 59.070 37.037 0.00 0.00 32.13 3.86
2927 3446 7.930865 ACAGAGAGAGTGCATATAAATTTCTCC 59.069 37.037 0.00 0.00 32.13 3.71
3140 3666 1.583967 CGAGAACTCGCGGTAGCAG 60.584 63.158 6.13 0.00 46.50 4.24
3200 3726 3.192796 GAGAAGAGGCTCGCGAGT 58.807 61.111 34.46 18.44 0.00 4.18
3242 3768 1.301087 CCTGACAACGCCGGTGTTA 60.301 57.895 31.59 16.60 0.00 2.41
3343 3869 5.361285 AGCTTGTCCTCATACTCGAACTTAT 59.639 40.000 0.00 0.00 0.00 1.73
3356 3882 4.020617 CCGCCCAGCTTGTCCTCA 62.021 66.667 0.00 0.00 0.00 3.86
3464 3990 4.028490 TTGCTCCCGGCGTCCATT 62.028 61.111 6.01 0.00 45.43 3.16
3545 4071 1.584724 AGTTCTCGGTGATGGGGAAT 58.415 50.000 0.00 0.00 0.00 3.01
3552 4078 1.471684 GACCACGTAGTTCTCGGTGAT 59.528 52.381 0.00 0.00 41.61 3.06
3632 4158 3.070590 GGTACCACTGGAACTTGTACAGT 59.929 47.826 7.15 0.00 45.62 3.55
3662 4188 1.521681 GACGTGCATGTAGCTCCCC 60.522 63.158 12.53 0.00 45.94 4.81
3839 4391 9.508642 GCTAATGGGCTAAGATTTAATCTAGTT 57.491 33.333 7.98 0.00 39.08 2.24
3840 4392 8.885346 AGCTAATGGGCTAAGATTTAATCTAGT 58.115 33.333 7.98 0.00 41.16 2.57
3865 4417 3.983044 AAGGGTGTGGCTAGTTCTTAG 57.017 47.619 0.00 0.00 0.00 2.18
3866 4418 4.717279 AAAAGGGTGTGGCTAGTTCTTA 57.283 40.909 0.00 0.00 0.00 2.10
3871 4423 3.595190 AAGAAAAAGGGTGTGGCTAGT 57.405 42.857 0.00 0.00 0.00 2.57
3876 4428 6.403049 AGTAAAACAAAGAAAAAGGGTGTGG 58.597 36.000 0.00 0.00 0.00 4.17
3880 4432 7.837689 ACTCCTAGTAAAACAAAGAAAAAGGGT 59.162 33.333 0.00 0.00 0.00 4.34
3895 4447 9.706691 GCATGCATAAACTATACTCCTAGTAAA 57.293 33.333 14.21 0.00 33.89 2.01
3896 4448 8.027189 CGCATGCATAAACTATACTCCTAGTAA 58.973 37.037 19.57 0.00 33.89 2.24
3902 4454 4.090066 CGACGCATGCATAAACTATACTCC 59.910 45.833 19.57 0.00 0.00 3.85
3903 4455 4.680110 ACGACGCATGCATAAACTATACTC 59.320 41.667 19.57 0.00 0.00 2.59
3910 4462 0.368907 ACGACGACGCATGCATAAAC 59.631 50.000 19.57 4.87 43.96 2.01
3912 4464 1.193644 GTACGACGACGCATGCATAA 58.806 50.000 19.57 0.00 43.96 1.90
4115 4693 2.014857 CGTAGATTGTGGAGACGGAGA 58.985 52.381 0.00 0.00 0.00 3.71
4175 4753 6.541641 GGTAGGAGAATCTTGTCTCGTAGTAA 59.458 42.308 5.18 0.00 44.30 2.24
4215 4801 0.652592 GAATCAAGATCCGCACGGTG 59.347 55.000 9.23 3.15 36.47 4.94
4245 4831 2.480587 CCTGCACGTACGTCCATGATTA 60.481 50.000 19.94 0.00 0.00 1.75
4452 5064 1.475403 TCTCCACCAGGTCGATCTTC 58.525 55.000 0.00 0.00 35.89 2.87
4536 5148 3.379445 TCTTCCTCGACGGCACCC 61.379 66.667 0.00 0.00 0.00 4.61
4584 5206 8.916654 CCAAATCAGATGAGTACATACGAATAC 58.083 37.037 0.00 0.00 36.82 1.89
4585 5207 8.088365 CCCAAATCAGATGAGTACATACGAATA 58.912 37.037 0.00 0.00 36.82 1.75
4586 5208 6.931281 CCCAAATCAGATGAGTACATACGAAT 59.069 38.462 0.00 0.00 36.82 3.34
4587 5209 6.127168 ACCCAAATCAGATGAGTACATACGAA 60.127 38.462 0.00 0.00 36.82 3.85
4590 5212 6.238484 GCAACCCAAATCAGATGAGTACATAC 60.238 42.308 0.00 0.00 36.82 2.39
4591 5213 5.822519 GCAACCCAAATCAGATGAGTACATA 59.177 40.000 0.00 0.00 36.82 2.29
4592 5214 4.641989 GCAACCCAAATCAGATGAGTACAT 59.358 41.667 0.00 0.00 39.67 2.29
4593 5215 4.009675 GCAACCCAAATCAGATGAGTACA 58.990 43.478 0.00 0.00 0.00 2.90
4594 5216 3.063997 CGCAACCCAAATCAGATGAGTAC 59.936 47.826 0.00 0.00 0.00 2.73
4595 5217 3.270027 CGCAACCCAAATCAGATGAGTA 58.730 45.455 0.00 0.00 0.00 2.59
4596 5218 2.086869 CGCAACCCAAATCAGATGAGT 58.913 47.619 0.00 0.00 0.00 3.41
4598 5220 1.004161 TCCGCAACCCAAATCAGATGA 59.996 47.619 0.00 0.00 0.00 2.92
4698 5345 1.521681 CCGGGCGATCTCCTTGAAC 60.522 63.158 0.93 0.00 0.00 3.18
4811 5507 1.068588 ACTGCGTACATATGCGACCAT 59.931 47.619 1.58 0.00 41.02 3.55
4812 5508 0.458260 ACTGCGTACATATGCGACCA 59.542 50.000 1.58 1.87 41.02 4.02
4852 5549 0.869068 CACGTACGGACCATGCAAAA 59.131 50.000 21.06 0.00 0.00 2.44
4853 5550 0.951525 CCACGTACGGACCATGCAAA 60.952 55.000 21.06 0.00 0.00 3.68
4854 5551 1.374885 CCACGTACGGACCATGCAA 60.375 57.895 21.06 0.00 0.00 4.08
4900 5597 6.918951 TCCATAATCTTTTCCTTCCCCTTA 57.081 37.500 0.00 0.00 0.00 2.69
4901 5598 5.813965 TCCATAATCTTTTCCTTCCCCTT 57.186 39.130 0.00 0.00 0.00 3.95
4902 5599 5.813965 TTCCATAATCTTTTCCTTCCCCT 57.186 39.130 0.00 0.00 0.00 4.79
4903 5600 8.547481 TTTATTCCATAATCTTTTCCTTCCCC 57.453 34.615 0.00 0.00 0.00 4.81
4917 5614 8.905660 TCGTTCGGGATTTATTTATTCCATAA 57.094 30.769 0.00 0.00 0.00 1.90
4937 5634 5.569413 ACATGCTTAAATTCCGAATCGTTC 58.431 37.500 0.82 0.00 0.00 3.95
4938 5635 5.123186 TGACATGCTTAAATTCCGAATCGTT 59.877 36.000 0.82 0.00 0.00 3.85
4939 5636 4.634004 TGACATGCTTAAATTCCGAATCGT 59.366 37.500 0.82 0.00 0.00 3.73
4940 5637 4.963953 GTGACATGCTTAAATTCCGAATCG 59.036 41.667 0.00 0.00 0.00 3.34
4941 5638 5.273944 GGTGACATGCTTAAATTCCGAATC 58.726 41.667 0.00 0.00 0.00 2.52
4942 5639 4.097892 GGGTGACATGCTTAAATTCCGAAT 59.902 41.667 0.00 0.00 0.00 3.34
4943 5640 3.442273 GGGTGACATGCTTAAATTCCGAA 59.558 43.478 0.00 0.00 0.00 4.30
4944 5641 3.013921 GGGTGACATGCTTAAATTCCGA 58.986 45.455 0.00 0.00 0.00 4.55
4945 5642 2.099098 GGGGTGACATGCTTAAATTCCG 59.901 50.000 0.00 0.00 0.00 4.30
4946 5643 2.099098 CGGGGTGACATGCTTAAATTCC 59.901 50.000 0.00 0.00 0.00 3.01
4947 5644 3.013921 TCGGGGTGACATGCTTAAATTC 58.986 45.455 0.00 0.00 0.00 2.17
4948 5645 3.080300 TCGGGGTGACATGCTTAAATT 57.920 42.857 0.00 0.00 0.00 1.82
4949 5646 2.752903 GTTCGGGGTGACATGCTTAAAT 59.247 45.455 0.00 0.00 0.00 1.40
4950 5647 2.156098 GTTCGGGGTGACATGCTTAAA 58.844 47.619 0.00 0.00 0.00 1.52
4951 5648 1.816074 GTTCGGGGTGACATGCTTAA 58.184 50.000 0.00 0.00 0.00 1.85
4952 5649 0.390603 CGTTCGGGGTGACATGCTTA 60.391 55.000 0.00 0.00 0.00 3.09
4953 5650 1.671054 CGTTCGGGGTGACATGCTT 60.671 57.895 0.00 0.00 0.00 3.91
4954 5651 2.047274 CGTTCGGGGTGACATGCT 60.047 61.111 0.00 0.00 0.00 3.79
4955 5652 1.512156 AAACGTTCGGGGTGACATGC 61.512 55.000 0.00 0.00 0.00 4.06
4956 5653 0.948678 AAAACGTTCGGGGTGACATG 59.051 50.000 0.00 0.00 0.00 3.21
4957 5654 1.682740 AAAAACGTTCGGGGTGACAT 58.317 45.000 0.00 0.00 0.00 3.06
4958 5655 3.171949 AAAAACGTTCGGGGTGACA 57.828 47.368 0.00 0.00 0.00 3.58
4984 5681 1.873591 CACCTCGCAGCAACTAAAGTT 59.126 47.619 0.00 0.00 39.12 2.66
4985 5682 1.512926 CACCTCGCAGCAACTAAAGT 58.487 50.000 0.00 0.00 0.00 2.66
4986 5683 0.798776 CCACCTCGCAGCAACTAAAG 59.201 55.000 0.00 0.00 0.00 1.85
4987 5684 1.234615 GCCACCTCGCAGCAACTAAA 61.235 55.000 0.00 0.00 0.00 1.85
4988 5685 1.671054 GCCACCTCGCAGCAACTAA 60.671 57.895 0.00 0.00 0.00 2.24
4989 5686 2.047274 GCCACCTCGCAGCAACTA 60.047 61.111 0.00 0.00 0.00 2.24
4990 5687 3.772853 TTGCCACCTCGCAGCAACT 62.773 57.895 0.00 0.00 41.35 3.16
4991 5688 3.286751 TTGCCACCTCGCAGCAAC 61.287 61.111 0.00 0.00 41.35 4.17
4992 5689 3.286751 GTTGCCACCTCGCAGCAA 61.287 61.111 0.00 0.00 43.83 3.91
4993 5690 3.772853 AAGTTGCCACCTCGCAGCA 62.773 57.895 0.00 0.00 41.92 4.41
4994 5691 1.234615 TAAAGTTGCCACCTCGCAGC 61.235 55.000 0.00 0.00 40.53 5.25
4995 5692 0.798776 CTAAAGTTGCCACCTCGCAG 59.201 55.000 0.00 0.00 40.53 5.18
4996 5693 0.107831 ACTAAAGTTGCCACCTCGCA 59.892 50.000 0.00 0.00 36.85 5.10
4997 5694 1.235724 AACTAAAGTTGCCACCTCGC 58.764 50.000 0.00 0.00 36.80 5.03
5020 5717 8.967218 CGAACTGAAATAAAATTGTCATGTGTT 58.033 29.630 0.00 0.00 0.00 3.32
5021 5718 8.349245 TCGAACTGAAATAAAATTGTCATGTGT 58.651 29.630 0.00 0.00 0.00 3.72
5022 5719 8.726650 TCGAACTGAAATAAAATTGTCATGTG 57.273 30.769 0.00 0.00 0.00 3.21
5023 5720 9.912634 AATCGAACTGAAATAAAATTGTCATGT 57.087 25.926 0.00 0.00 0.00 3.21
5049 5746 6.998968 AACATGGCAATTTTCTGACAAAAA 57.001 29.167 0.00 0.00 38.03 1.94
5050 5747 6.998968 AAACATGGCAATTTTCTGACAAAA 57.001 29.167 0.00 0.00 38.03 2.44
5051 5748 6.373774 ACAAAACATGGCAATTTTCTGACAAA 59.626 30.769 9.22 0.00 38.03 2.83
5052 5749 5.879223 ACAAAACATGGCAATTTTCTGACAA 59.121 32.000 9.22 0.00 38.03 3.18
5053 5750 5.426504 ACAAAACATGGCAATTTTCTGACA 58.573 33.333 9.22 0.00 39.14 3.58
5054 5751 5.523188 TGACAAAACATGGCAATTTTCTGAC 59.477 36.000 9.22 3.55 46.71 3.51
5055 5752 5.668471 TGACAAAACATGGCAATTTTCTGA 58.332 33.333 9.22 0.00 46.71 3.27
5056 5753 5.987777 TGACAAAACATGGCAATTTTCTG 57.012 34.783 9.22 4.49 46.71 3.02
5065 5762 1.257675 GCGTTGTTGACAAAACATGGC 59.742 47.619 0.00 0.00 37.63 4.40
5066 5763 1.857837 GGCGTTGTTGACAAAACATGG 59.142 47.619 0.00 0.00 37.63 3.66
5067 5764 2.808244 AGGCGTTGTTGACAAAACATG 58.192 42.857 0.00 0.00 37.63 3.21
5068 5765 3.119316 TCAAGGCGTTGTTGACAAAACAT 60.119 39.130 17.96 0.00 37.63 2.71
5069 5766 2.229062 TCAAGGCGTTGTTGACAAAACA 59.771 40.909 17.96 0.00 37.63 2.83
5070 5767 2.869897 TCAAGGCGTTGTTGACAAAAC 58.130 42.857 17.96 0.00 37.63 2.43
5071 5768 3.791973 ATCAAGGCGTTGTTGACAAAA 57.208 38.095 17.96 0.00 36.76 2.44
5072 5769 3.791973 AATCAAGGCGTTGTTGACAAA 57.208 38.095 17.96 0.00 36.76 2.83
5073 5770 4.902443 TTAATCAAGGCGTTGTTGACAA 57.098 36.364 17.96 0.00 36.76 3.18
5074 5771 4.336993 ACTTTAATCAAGGCGTTGTTGACA 59.663 37.500 17.96 0.00 36.76 3.58
5075 5772 4.855531 ACTTTAATCAAGGCGTTGTTGAC 58.144 39.130 17.96 0.00 36.76 3.18
5076 5773 5.163602 ACAACTTTAATCAAGGCGTTGTTGA 60.164 36.000 17.96 5.57 41.25 3.18
5077 5774 5.040635 ACAACTTTAATCAAGGCGTTGTTG 58.959 37.500 17.96 14.65 41.25 3.33
5078 5775 5.163602 TGACAACTTTAATCAAGGCGTTGTT 60.164 36.000 17.96 13.55 43.24 2.83
5079 5776 4.336993 TGACAACTTTAATCAAGGCGTTGT 59.663 37.500 17.96 8.82 45.10 3.32
5080 5777 4.854399 TGACAACTTTAATCAAGGCGTTG 58.146 39.130 12.91 12.91 36.72 4.10
5081 5778 5.240623 TCATGACAACTTTAATCAAGGCGTT 59.759 36.000 0.00 0.00 36.72 4.84
5082 5779 4.759693 TCATGACAACTTTAATCAAGGCGT 59.240 37.500 0.00 0.00 36.72 5.68
5083 5780 5.295431 TCATGACAACTTTAATCAAGGCG 57.705 39.130 0.00 0.00 36.72 5.52
5084 5781 7.945033 TTTTCATGACAACTTTAATCAAGGC 57.055 32.000 0.00 0.00 36.72 4.35
5106 5803 9.933723 ATTTAAGCATGCTAATCTGAACTTTTT 57.066 25.926 23.00 1.95 0.00 1.94
5107 5804 9.933723 AATTTAAGCATGCTAATCTGAACTTTT 57.066 25.926 23.00 2.44 0.00 2.27
5108 5805 9.578439 GAATTTAAGCATGCTAATCTGAACTTT 57.422 29.630 23.00 2.67 0.00 2.66
5109 5806 8.964772 AGAATTTAAGCATGCTAATCTGAACTT 58.035 29.630 23.00 3.26 0.00 2.66
5110 5807 8.404000 CAGAATTTAAGCATGCTAATCTGAACT 58.596 33.333 27.06 16.61 0.00 3.01
5111 5808 8.400947 TCAGAATTTAAGCATGCTAATCTGAAC 58.599 33.333 29.10 16.79 0.00 3.18
5112 5809 8.510243 TCAGAATTTAAGCATGCTAATCTGAA 57.490 30.769 29.10 17.40 0.00 3.02
5113 5810 8.400947 GTTCAGAATTTAAGCATGCTAATCTGA 58.599 33.333 28.34 28.34 0.00 3.27
5114 5811 7.375280 CGTTCAGAATTTAAGCATGCTAATCTG 59.625 37.037 23.00 25.11 0.00 2.90
5115 5812 7.066284 ACGTTCAGAATTTAAGCATGCTAATCT 59.934 33.333 23.00 16.23 0.00 2.40
5116 5813 7.189512 ACGTTCAGAATTTAAGCATGCTAATC 58.810 34.615 23.00 14.29 0.00 1.75
5117 5814 7.088589 ACGTTCAGAATTTAAGCATGCTAAT 57.911 32.000 23.00 15.27 0.00 1.73
5118 5815 6.494893 ACGTTCAGAATTTAAGCATGCTAA 57.505 33.333 23.00 13.40 0.00 3.09
5119 5816 6.494893 AACGTTCAGAATTTAAGCATGCTA 57.505 33.333 23.00 5.74 0.00 3.49
5120 5817 5.376854 AACGTTCAGAATTTAAGCATGCT 57.623 34.783 16.30 16.30 0.00 3.79
5121 5818 4.260656 CGAACGTTCAGAATTTAAGCATGC 59.739 41.667 26.71 10.51 0.00 4.06
5122 5819 4.788100 CCGAACGTTCAGAATTTAAGCATG 59.212 41.667 26.71 6.15 0.00 4.06
5123 5820 4.142687 CCCGAACGTTCAGAATTTAAGCAT 60.143 41.667 26.71 0.00 0.00 3.79
5124 5821 3.187637 CCCGAACGTTCAGAATTTAAGCA 59.812 43.478 26.71 0.00 0.00 3.91
5125 5822 3.434299 TCCCGAACGTTCAGAATTTAAGC 59.566 43.478 26.71 0.00 0.00 3.09
5126 5823 4.689345 AGTCCCGAACGTTCAGAATTTAAG 59.311 41.667 26.71 7.94 0.00 1.85
5127 5824 4.634199 AGTCCCGAACGTTCAGAATTTAA 58.366 39.130 26.71 1.63 0.00 1.52
5128 5825 4.261578 AGTCCCGAACGTTCAGAATTTA 57.738 40.909 26.71 3.11 0.00 1.40
5129 5826 3.121738 AGTCCCGAACGTTCAGAATTT 57.878 42.857 26.71 9.85 0.00 1.82
5130 5827 2.833631 AGTCCCGAACGTTCAGAATT 57.166 45.000 26.71 11.97 0.00 2.17
5131 5828 2.833631 AAGTCCCGAACGTTCAGAAT 57.166 45.000 26.71 18.52 0.00 2.40
5132 5829 3.947910 ATAAGTCCCGAACGTTCAGAA 57.052 42.857 26.71 9.04 0.00 3.02
5133 5830 3.256383 TCAATAAGTCCCGAACGTTCAGA 59.744 43.478 26.71 19.38 0.00 3.27
5134 5831 3.581755 TCAATAAGTCCCGAACGTTCAG 58.418 45.455 26.71 16.41 0.00 3.02
5135 5832 3.581755 CTCAATAAGTCCCGAACGTTCA 58.418 45.455 26.71 5.90 0.00 3.18
5136 5833 2.928116 CCTCAATAAGTCCCGAACGTTC 59.072 50.000 18.47 18.47 0.00 3.95
5137 5834 2.301009 ACCTCAATAAGTCCCGAACGTT 59.699 45.455 0.00 0.00 0.00 3.99
5138 5835 1.897802 ACCTCAATAAGTCCCGAACGT 59.102 47.619 0.00 0.00 0.00 3.99
5139 5836 2.537401 GACCTCAATAAGTCCCGAACG 58.463 52.381 0.00 0.00 0.00 3.95
5140 5837 2.902523 GGACCTCAATAAGTCCCGAAC 58.097 52.381 0.00 0.00 45.76 3.95
5156 5853 9.274206 GGACATTCTACTAATAATCTTTGGACC 57.726 37.037 0.00 0.00 0.00 4.46
5157 5854 8.979574 CGGACATTCTACTAATAATCTTTGGAC 58.020 37.037 0.00 0.00 0.00 4.02
5158 5855 8.701895 ACGGACATTCTACTAATAATCTTTGGA 58.298 33.333 0.00 0.00 0.00 3.53
5159 5856 8.765219 CACGGACATTCTACTAATAATCTTTGG 58.235 37.037 0.00 0.00 0.00 3.28
5160 5857 8.276325 GCACGGACATTCTACTAATAATCTTTG 58.724 37.037 0.00 0.00 0.00 2.77
5161 5858 7.985184 TGCACGGACATTCTACTAATAATCTTT 59.015 33.333 0.00 0.00 0.00 2.52
5162 5859 7.497595 TGCACGGACATTCTACTAATAATCTT 58.502 34.615 0.00 0.00 0.00 2.40
5163 5860 7.050970 TGCACGGACATTCTACTAATAATCT 57.949 36.000 0.00 0.00 0.00 2.40
5164 5861 7.891183 ATGCACGGACATTCTACTAATAATC 57.109 36.000 0.00 0.00 0.00 1.75
5165 5862 7.307989 GCAATGCACGGACATTCTACTAATAAT 60.308 37.037 0.00 0.00 38.19 1.28
5166 5863 6.018262 GCAATGCACGGACATTCTACTAATAA 60.018 38.462 0.00 0.00 38.19 1.40
5167 5864 5.465390 GCAATGCACGGACATTCTACTAATA 59.535 40.000 0.00 0.00 38.19 0.98
5168 5865 4.273480 GCAATGCACGGACATTCTACTAAT 59.727 41.667 0.00 0.00 38.19 1.73
5169 5866 3.621268 GCAATGCACGGACATTCTACTAA 59.379 43.478 0.00 0.00 38.19 2.24
5180 5877 1.823470 GCCCATAGCAATGCACGGA 60.823 57.895 8.35 0.00 42.97 4.69
5277 5974 3.765381 TGATGTCTGAAAATGCCTGGAA 58.235 40.909 0.00 0.00 0.00 3.53
5287 5984 3.149196 GGCTCCTGTTTGATGTCTGAAA 58.851 45.455 0.00 0.00 0.00 2.69
5291 5988 2.787994 CTTGGCTCCTGTTTGATGTCT 58.212 47.619 0.00 0.00 0.00 3.41
5309 6006 5.106157 CGATTGAATTTTGGGTAGTCTGCTT 60.106 40.000 0.00 0.00 0.00 3.91
5315 6012 7.825270 TGTACATACGATTGAATTTTGGGTAGT 59.175 33.333 0.00 0.00 0.00 2.73
5378 6075 4.457949 GGATAGTTCGGACAACCACATTTT 59.542 41.667 0.00 0.00 35.59 1.82
5392 6089 5.154932 GGAGATAACATGTCGGATAGTTCG 58.845 45.833 0.00 0.00 0.00 3.95
5394 6091 6.127168 TGTTGGAGATAACATGTCGGATAGTT 60.127 38.462 0.00 0.00 35.75 2.24
5442 6139 1.152652 TGCGTCATGGGGTGGTTTT 60.153 52.632 0.00 0.00 0.00 2.43
5445 6142 4.722700 GCTGCGTCATGGGGTGGT 62.723 66.667 0.00 0.00 0.00 4.16
5496 6193 2.658325 CCGGTTACGACGTGAAACTAAG 59.342 50.000 11.56 4.47 44.60 2.18
5505 6202 1.270550 AGAAATGTCCGGTTACGACGT 59.729 47.619 5.52 5.52 44.60 4.34
5513 6210 1.002087 GTCCAGTGAGAAATGTCCGGT 59.998 52.381 0.00 0.00 0.00 5.28
5517 6214 1.340114 GGGGGTCCAGTGAGAAATGTC 60.340 57.143 0.00 0.00 0.00 3.06
5533 6230 0.699981 TCCGGTTTTAAAGGAGGGGG 59.300 55.000 0.00 0.00 0.00 5.40
5539 6236 0.179148 GCGCCATCCGGTTTTAAAGG 60.179 55.000 0.00 0.00 37.44 3.11
5570 6269 1.997874 GGAGAGAGGGTGCCATGGT 60.998 63.158 14.67 0.00 0.00 3.55
5579 6278 2.074729 ACGGTATGAAGGAGAGAGGG 57.925 55.000 0.00 0.00 0.00 4.30
5593 6292 3.053395 ACTGTCTATGGGGAAGTACGGTA 60.053 47.826 0.00 0.00 0.00 4.02
5596 6295 2.033049 CGACTGTCTATGGGGAAGTACG 59.967 54.545 6.21 0.00 0.00 3.67
5617 6316 2.700773 GCGGTTGGCATGGGACTTC 61.701 63.158 0.00 0.00 42.87 3.01
5650 6353 0.163788 CGGATCAGCACAAACACGAC 59.836 55.000 0.00 0.00 0.00 4.34
5663 6366 2.589540 GATGGTGGTGGCGGATCA 59.410 61.111 0.00 0.00 0.00 2.92
5700 6403 5.116882 ACGGCTGTCTTAGTGGAATAATTC 58.883 41.667 0.00 0.00 0.00 2.17
5720 6423 2.616256 GGGGTTTAGGGTTCAGTTACGG 60.616 54.545 0.00 0.00 0.00 4.02
5756 6459 4.940046 CCTCCCACTTATATTATGCAGCAG 59.060 45.833 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.