Multiple sequence alignment - TraesCS3A01G073000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G073000 chr3A 100.000 2635 0 0 1 2635 45126358 45123724 0.000000e+00 4867.0
1 TraesCS3A01G073000 chr3D 88.632 1513 70 33 313 1774 32714053 32712592 0.000000e+00 1748.0
2 TraesCS3A01G073000 chr3D 89.455 275 12 5 1735 2007 32712567 32712308 5.440000e-87 331.0
3 TraesCS3A01G073000 chr3D 84.615 78 8 4 2226 2301 126982943 126982868 1.010000e-09 75.0
4 TraesCS3A01G073000 chr3B 87.477 1078 38 34 728 1781 55367067 55366063 0.000000e+00 1153.0
5 TraesCS3A01G073000 chr3B 95.413 218 6 3 1793 2007 55365939 55365723 6.980000e-91 344.0
6 TraesCS3A01G073000 chr3B 97.368 190 5 0 101 290 693340006 693340195 9.100000e-85 324.0
7 TraesCS3A01G073000 chrUn 89.557 632 37 14 2005 2635 351362966 351362363 0.000000e+00 774.0
8 TraesCS3A01G073000 chrUn 89.241 632 39 14 2005 2635 357664895 357664292 0.000000e+00 763.0
9 TraesCS3A01G073000 chr5A 88.506 348 32 6 995 1335 2727315 2727661 5.250000e-112 414.0
10 TraesCS3A01G073000 chr5A 93.464 153 10 0 1448 1600 2727749 2727901 7.340000e-56 228.0
11 TraesCS3A01G073000 chr1B 100.000 187 0 0 105 291 141109676 141109862 1.940000e-91 346.0
12 TraesCS3A01G073000 chr7D 99.468 188 1 0 105 292 38077785 38077598 2.510000e-90 342.0
13 TraesCS3A01G073000 chr4B 98.378 185 2 1 107 291 642775252 642775435 9.100000e-85 324.0
14 TraesCS3A01G073000 chr4B 91.878 197 16 0 1136 1332 23414696 23414892 2.580000e-70 276.0
15 TraesCS3A01G073000 chr4B 89.848 197 20 0 1136 1332 23392661 23392465 1.210000e-63 254.0
16 TraesCS3A01G073000 chr2B 98.343 181 2 1 107 287 555319686 555319865 1.520000e-82 316.0
17 TraesCS3A01G073000 chr7A 96.296 189 5 2 106 294 733370408 733370594 2.550000e-80 309.0
18 TraesCS3A01G073000 chr2A 96.739 184 4 1 107 290 756217119 756216938 3.290000e-79 305.0
19 TraesCS3A01G073000 chr4D 98.824 170 2 0 121 290 356561443 356561274 1.190000e-78 303.0
20 TraesCS3A01G073000 chr4D 95.767 189 3 1 104 292 102530062 102529879 1.530000e-77 300.0
21 TraesCS3A01G073000 chr5B 85.017 287 37 3 2011 2292 493479852 493479567 1.190000e-73 287.0
22 TraesCS3A01G073000 chr5B 92.157 153 7 3 2323 2475 493479632 493479485 7.390000e-51 211.0
23 TraesCS3A01G073000 chr5B 92.308 91 7 0 2545 2635 493479464 493479374 2.130000e-26 130.0
24 TraesCS3A01G073000 chr4A 90.863 197 18 0 1136 1332 589661694 589661890 5.590000e-67 265.0
25 TraesCS3A01G073000 chr4A 90.863 197 18 0 1136 1332 589835325 589835521 5.590000e-67 265.0
26 TraesCS3A01G073000 chr4A 89.848 197 20 0 1136 1332 589813275 589813471 1.210000e-63 254.0
27 TraesCS3A01G073000 chr6A 89.937 159 12 3 2477 2635 373082252 373082098 4.450000e-48 202.0
28 TraesCS3A01G073000 chr6A 90.132 152 10 3 2326 2477 373082371 373082225 2.680000e-45 193.0
29 TraesCS3A01G073000 chr5D 86.466 133 14 1 1445 1573 3829161 3829293 2.730000e-30 143.0
30 TraesCS3A01G073000 chr1D 84.615 78 7 5 2562 2635 469060550 469060474 3.640000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G073000 chr3A 45123724 45126358 2634 True 4867.0 4867 100.0000 1 2635 1 chr3A.!!$R1 2634
1 TraesCS3A01G073000 chr3D 32712308 32714053 1745 True 1039.5 1748 89.0435 313 2007 2 chr3D.!!$R2 1694
2 TraesCS3A01G073000 chr3B 55365723 55367067 1344 True 748.5 1153 91.4450 728 2007 2 chr3B.!!$R1 1279
3 TraesCS3A01G073000 chrUn 351362363 351362966 603 True 774.0 774 89.5570 2005 2635 1 chrUn.!!$R1 630
4 TraesCS3A01G073000 chrUn 357664292 357664895 603 True 763.0 763 89.2410 2005 2635 1 chrUn.!!$R2 630
5 TraesCS3A01G073000 chr5A 2727315 2727901 586 False 321.0 414 90.9850 995 1600 2 chr5A.!!$F1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 992 0.030101 GCTAGCTACCACTCTCGCAG 59.97 60.0 7.7 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2487 2708 0.034863 AAACGTTGGTGTGGTGTCCT 60.035 50.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.931044 AACATGCATAGTGGGCCAT 57.069 47.368 10.70 1.02 0.00 4.40
19 20 1.405872 AACATGCATAGTGGGCCATG 58.594 50.000 10.70 5.14 0.00 3.66
20 21 0.468585 ACATGCATAGTGGGCCATGG 60.469 55.000 10.70 7.63 0.00 3.66
21 22 0.468585 CATGCATAGTGGGCCATGGT 60.469 55.000 10.70 0.00 0.00 3.55
22 23 1.148216 ATGCATAGTGGGCCATGGTA 58.852 50.000 10.70 2.15 0.00 3.25
23 24 0.473755 TGCATAGTGGGCCATGGTAG 59.526 55.000 10.70 0.00 0.00 3.18
24 25 0.890996 GCATAGTGGGCCATGGTAGC 60.891 60.000 10.70 7.37 0.00 3.58
25 26 0.473755 CATAGTGGGCCATGGTAGCA 59.526 55.000 10.70 0.00 0.00 3.49
26 27 1.074405 CATAGTGGGCCATGGTAGCAT 59.926 52.381 10.70 0.40 0.00 3.79
27 28 0.473755 TAGTGGGCCATGGTAGCATG 59.526 55.000 24.80 24.80 0.00 4.06
33 34 2.811307 CCATGGTAGCATGGGTTGG 58.189 57.895 36.17 19.22 46.28 3.77
34 35 1.394266 CCATGGTAGCATGGGTTGGC 61.394 60.000 36.17 0.00 46.28 4.52
35 36 1.076044 ATGGTAGCATGGGTTGGCC 60.076 57.895 6.62 0.00 0.00 5.36
36 37 1.583784 ATGGTAGCATGGGTTGGCCT 61.584 55.000 6.62 0.00 34.45 5.19
37 38 1.754234 GGTAGCATGGGTTGGCCTG 60.754 63.158 3.32 0.00 34.45 4.85
38 39 1.000896 GTAGCATGGGTTGGCCTGT 60.001 57.895 3.32 0.00 34.45 4.00
39 40 1.032114 GTAGCATGGGTTGGCCTGTC 61.032 60.000 3.32 0.00 34.45 3.51
40 41 2.535485 TAGCATGGGTTGGCCTGTCG 62.535 60.000 3.32 0.00 34.45 4.35
41 42 3.443045 CATGGGTTGGCCTGTCGC 61.443 66.667 3.32 3.39 34.45 5.19
42 43 3.650950 ATGGGTTGGCCTGTCGCT 61.651 61.111 3.32 0.00 37.74 4.93
43 44 3.210012 ATGGGTTGGCCTGTCGCTT 62.210 57.895 3.32 0.00 37.74 4.68
44 45 3.056328 GGGTTGGCCTGTCGCTTC 61.056 66.667 3.32 0.00 37.74 3.86
45 46 3.056328 GGTTGGCCTGTCGCTTCC 61.056 66.667 3.32 0.00 37.74 3.46
46 47 2.032681 GTTGGCCTGTCGCTTCCT 59.967 61.111 3.32 0.00 37.74 3.36
47 48 2.035442 GTTGGCCTGTCGCTTCCTC 61.035 63.158 3.32 0.00 37.74 3.71
48 49 3.254024 TTGGCCTGTCGCTTCCTCC 62.254 63.158 3.32 0.00 37.74 4.30
49 50 3.706373 GGCCTGTCGCTTCCTCCA 61.706 66.667 0.00 0.00 37.74 3.86
50 51 2.125350 GCCTGTCGCTTCCTCCAG 60.125 66.667 0.00 0.00 0.00 3.86
51 52 2.581354 CCTGTCGCTTCCTCCAGG 59.419 66.667 0.00 0.00 38.63 4.45
52 53 2.125350 CTGTCGCTTCCTCCAGGC 60.125 66.667 0.00 0.00 34.44 4.85
53 54 2.604686 TGTCGCTTCCTCCAGGCT 60.605 61.111 0.00 0.00 34.44 4.58
54 55 2.185608 GTCGCTTCCTCCAGGCTC 59.814 66.667 0.00 0.00 34.44 4.70
55 56 3.452786 TCGCTTCCTCCAGGCTCG 61.453 66.667 0.00 0.00 34.44 5.03
56 57 4.521062 CGCTTCCTCCAGGCTCGG 62.521 72.222 0.00 0.00 34.44 4.63
57 58 4.168291 GCTTCCTCCAGGCTCGGG 62.168 72.222 3.64 0.00 34.44 5.14
58 59 4.168291 CTTCCTCCAGGCTCGGGC 62.168 72.222 0.00 0.00 37.82 6.13
59 60 4.722535 TTCCTCCAGGCTCGGGCT 62.723 66.667 7.48 0.00 39.66 5.19
60 61 4.722535 TCCTCCAGGCTCGGGCTT 62.723 66.667 7.48 0.00 35.88 4.35
61 62 4.479993 CCTCCAGGCTCGGGCTTG 62.480 72.222 13.33 13.33 43.84 4.01
65 66 3.710722 CAGGCTCGGGCTTGGAGT 61.711 66.667 12.35 0.00 41.09 3.85
66 67 2.930562 AGGCTCGGGCTTGGAGTT 60.931 61.111 7.48 0.00 33.67 3.01
67 68 2.747855 GGCTCGGGCTTGGAGTTG 60.748 66.667 7.48 0.00 38.73 3.16
68 69 2.032681 GCTCGGGCTTGGAGTTGT 59.967 61.111 0.00 0.00 34.00 3.32
69 70 2.035442 GCTCGGGCTTGGAGTTGTC 61.035 63.158 0.00 0.00 34.00 3.18
70 71 1.674057 CTCGGGCTTGGAGTTGTCT 59.326 57.895 0.00 0.00 0.00 3.41
71 72 0.390472 CTCGGGCTTGGAGTTGTCTC 60.390 60.000 0.00 0.00 39.76 3.36
72 73 1.118965 TCGGGCTTGGAGTTGTCTCA 61.119 55.000 0.00 0.00 42.05 3.27
73 74 0.671781 CGGGCTTGGAGTTGTCTCAG 60.672 60.000 0.00 0.00 42.05 3.35
74 75 0.957888 GGGCTTGGAGTTGTCTCAGC 60.958 60.000 0.00 0.00 42.05 4.26
75 76 0.036022 GGCTTGGAGTTGTCTCAGCT 59.964 55.000 7.24 0.00 42.05 4.24
76 77 1.544314 GGCTTGGAGTTGTCTCAGCTT 60.544 52.381 0.00 0.00 42.05 3.74
77 78 1.803555 GCTTGGAGTTGTCTCAGCTTC 59.196 52.381 0.00 0.00 42.05 3.86
78 79 2.808202 GCTTGGAGTTGTCTCAGCTTCA 60.808 50.000 0.00 0.00 42.05 3.02
79 80 2.827800 TGGAGTTGTCTCAGCTTCAG 57.172 50.000 0.00 0.00 42.05 3.02
80 81 1.345741 TGGAGTTGTCTCAGCTTCAGG 59.654 52.381 0.00 0.00 42.05 3.86
81 82 1.338579 GGAGTTGTCTCAGCTTCAGGG 60.339 57.143 0.00 0.00 42.05 4.45
82 83 1.620819 GAGTTGTCTCAGCTTCAGGGA 59.379 52.381 0.00 0.00 40.18 4.20
83 84 2.037772 GAGTTGTCTCAGCTTCAGGGAA 59.962 50.000 0.00 0.00 40.18 3.97
84 85 2.439507 AGTTGTCTCAGCTTCAGGGAAA 59.560 45.455 0.00 0.00 0.00 3.13
85 86 2.550180 GTTGTCTCAGCTTCAGGGAAAC 59.450 50.000 0.00 0.00 0.00 2.78
99 100 1.923356 GGAAACCAAGGCATCCTTCA 58.077 50.000 0.00 0.00 42.67 3.02
100 101 1.546029 GGAAACCAAGGCATCCTTCAC 59.454 52.381 0.00 0.00 42.67 3.18
101 102 1.546029 GAAACCAAGGCATCCTTCACC 59.454 52.381 0.00 0.00 42.67 4.02
102 103 0.779997 AACCAAGGCATCCTTCACCT 59.220 50.000 0.00 0.00 42.67 4.00
103 104 0.038744 ACCAAGGCATCCTTCACCTG 59.961 55.000 0.00 0.00 42.67 4.00
104 105 0.329261 CCAAGGCATCCTTCACCTGA 59.671 55.000 0.00 0.00 42.67 3.86
105 106 1.272092 CCAAGGCATCCTTCACCTGAA 60.272 52.381 0.00 0.00 42.67 3.02
106 107 2.089980 CAAGGCATCCTTCACCTGAAG 58.910 52.381 7.92 7.92 42.67 3.02
114 115 2.616969 TTCACCTGAAGAGCGTTGC 58.383 52.632 0.00 0.00 0.00 4.17
115 116 0.106708 TTCACCTGAAGAGCGTTGCT 59.893 50.000 0.00 0.00 43.88 3.91
116 117 0.966179 TCACCTGAAGAGCGTTGCTA 59.034 50.000 0.00 0.00 39.88 3.49
117 118 1.067565 TCACCTGAAGAGCGTTGCTAG 60.068 52.381 0.00 0.00 39.88 3.42
118 119 1.067565 CACCTGAAGAGCGTTGCTAGA 60.068 52.381 0.00 0.00 39.88 2.43
119 120 1.067495 ACCTGAAGAGCGTTGCTAGAC 60.067 52.381 0.00 0.00 39.88 2.59
120 121 1.067565 CCTGAAGAGCGTTGCTAGACA 60.068 52.381 0.00 0.00 39.88 3.41
121 122 2.257894 CTGAAGAGCGTTGCTAGACAG 58.742 52.381 0.00 0.00 39.88 3.51
122 123 1.886542 TGAAGAGCGTTGCTAGACAGA 59.113 47.619 0.00 0.00 39.88 3.41
123 124 2.255316 GAAGAGCGTTGCTAGACAGAC 58.745 52.381 0.00 0.00 39.88 3.51
124 125 0.169230 AGAGCGTTGCTAGACAGACG 59.831 55.000 0.00 5.88 39.88 4.18
125 126 0.168348 GAGCGTTGCTAGACAGACGA 59.832 55.000 17.07 0.00 39.88 4.20
126 127 0.811915 AGCGTTGCTAGACAGACGAT 59.188 50.000 17.07 12.16 36.99 3.73
127 128 0.917259 GCGTTGCTAGACAGACGATG 59.083 55.000 17.07 0.00 35.90 3.84
128 129 0.917259 CGTTGCTAGACAGACGATGC 59.083 55.000 0.00 0.00 35.90 3.91
129 130 1.281899 GTTGCTAGACAGACGATGCC 58.718 55.000 0.00 0.00 0.00 4.40
130 131 1.134965 GTTGCTAGACAGACGATGCCT 60.135 52.381 0.00 0.00 0.00 4.75
131 132 0.457443 TGCTAGACAGACGATGCCTG 59.543 55.000 0.00 0.00 37.64 4.85
132 133 0.873743 GCTAGACAGACGATGCCTGC 60.874 60.000 0.00 0.00 35.14 4.85
133 134 0.457443 CTAGACAGACGATGCCTGCA 59.543 55.000 0.00 0.00 35.14 4.41
134 135 0.173481 TAGACAGACGATGCCTGCAC 59.827 55.000 0.00 0.00 35.14 4.57
135 136 2.433145 ACAGACGATGCCTGCACG 60.433 61.111 10.88 10.88 35.14 5.34
136 137 3.190849 CAGACGATGCCTGCACGG 61.191 66.667 14.98 0.00 0.00 4.94
148 149 3.507924 GCACGGCCGATGCATGAA 61.508 61.111 33.23 0.00 42.88 2.57
149 150 2.404789 CACGGCCGATGCATGAAC 59.595 61.111 35.90 0.00 40.13 3.18
150 151 3.195002 ACGGCCGATGCATGAACG 61.195 61.111 35.90 6.01 40.13 3.95
151 152 2.889988 CGGCCGATGCATGAACGA 60.890 61.111 24.07 0.00 40.13 3.85
152 153 2.246739 CGGCCGATGCATGAACGAT 61.247 57.895 24.07 0.00 40.13 3.73
153 154 1.775039 CGGCCGATGCATGAACGATT 61.775 55.000 24.07 0.00 40.13 3.34
154 155 0.040958 GGCCGATGCATGAACGATTC 60.041 55.000 2.46 0.00 40.13 2.52
155 156 0.657312 GCCGATGCATGAACGATTCA 59.343 50.000 2.46 0.00 45.01 2.57
164 165 2.371910 TGAACGATTCATACGTGGCA 57.628 45.000 0.00 0.00 43.16 4.92
165 166 2.267426 TGAACGATTCATACGTGGCAG 58.733 47.619 0.00 0.00 43.16 4.85
166 167 1.004927 GAACGATTCATACGTGGCAGC 60.005 52.381 0.00 0.00 43.16 5.25
167 168 0.108377 ACGATTCATACGTGGCAGCA 60.108 50.000 0.00 0.00 42.37 4.41
168 169 0.301687 CGATTCATACGTGGCAGCAC 59.698 55.000 0.00 0.00 0.00 4.40
169 170 0.657840 GATTCATACGTGGCAGCACC 59.342 55.000 0.00 0.00 39.84 5.01
183 184 2.434884 CACCAGCAGCGACCGATT 60.435 61.111 0.00 0.00 0.00 3.34
184 185 2.125512 ACCAGCAGCGACCGATTC 60.126 61.111 0.00 0.00 0.00 2.52
185 186 2.185350 CCAGCAGCGACCGATTCT 59.815 61.111 0.00 0.00 0.00 2.40
186 187 1.880340 CCAGCAGCGACCGATTCTC 60.880 63.158 0.00 0.00 0.00 2.87
187 188 1.153765 CAGCAGCGACCGATTCTCA 60.154 57.895 0.00 0.00 0.00 3.27
188 189 0.737367 CAGCAGCGACCGATTCTCAA 60.737 55.000 0.00 0.00 0.00 3.02
189 190 0.176680 AGCAGCGACCGATTCTCAAT 59.823 50.000 0.00 0.00 0.00 2.57
190 191 1.009829 GCAGCGACCGATTCTCAATT 58.990 50.000 0.00 0.00 0.00 2.32
191 192 2.159099 AGCAGCGACCGATTCTCAATTA 60.159 45.455 0.00 0.00 0.00 1.40
192 193 2.607635 GCAGCGACCGATTCTCAATTAA 59.392 45.455 0.00 0.00 0.00 1.40
193 194 3.063452 GCAGCGACCGATTCTCAATTAAA 59.937 43.478 0.00 0.00 0.00 1.52
194 195 4.436852 GCAGCGACCGATTCTCAATTAAAA 60.437 41.667 0.00 0.00 0.00 1.52
195 196 5.627172 CAGCGACCGATTCTCAATTAAAAA 58.373 37.500 0.00 0.00 0.00 1.94
212 213 0.961753 AAAAAGCACCAGCAGCTACC 59.038 50.000 0.00 0.00 42.53 3.18
213 214 1.237285 AAAAGCACCAGCAGCTACCG 61.237 55.000 0.00 0.00 42.53 4.02
214 215 2.397413 AAAGCACCAGCAGCTACCGT 62.397 55.000 0.00 0.00 42.53 4.83
215 216 3.121030 GCACCAGCAGCTACCGTG 61.121 66.667 10.71 10.71 41.58 4.94
216 217 3.121030 CACCAGCAGCTACCGTGC 61.121 66.667 0.00 0.00 41.54 5.34
217 218 4.742201 ACCAGCAGCTACCGTGCG 62.742 66.667 0.00 0.00 46.06 5.34
218 219 4.742201 CCAGCAGCTACCGTGCGT 62.742 66.667 0.00 0.00 46.06 5.24
219 220 3.481903 CAGCAGCTACCGTGCGTG 61.482 66.667 0.00 0.00 46.06 5.34
220 221 4.742201 AGCAGCTACCGTGCGTGG 62.742 66.667 0.00 0.00 46.06 4.94
221 222 4.735132 GCAGCTACCGTGCGTGGA 62.735 66.667 0.37 0.00 38.13 4.02
222 223 2.507102 CAGCTACCGTGCGTGGAG 60.507 66.667 0.37 0.00 38.13 3.86
223 224 3.760035 AGCTACCGTGCGTGGAGG 61.760 66.667 0.37 0.00 38.13 4.30
224 225 3.755628 GCTACCGTGCGTGGAGGA 61.756 66.667 0.37 0.00 0.00 3.71
225 226 2.490217 CTACCGTGCGTGGAGGAG 59.510 66.667 0.37 0.00 0.00 3.69
226 227 3.701604 CTACCGTGCGTGGAGGAGC 62.702 68.421 0.37 0.00 0.00 4.70
230 231 4.767255 GTGCGTGGAGGAGCCCTG 62.767 72.222 0.00 0.00 31.76 4.45
232 233 4.021925 GCGTGGAGGAGCCCTGTT 62.022 66.667 0.00 0.00 31.76 3.16
233 234 2.046892 CGTGGAGGAGCCCTGTTG 60.047 66.667 0.00 0.00 31.76 3.33
234 235 2.352805 GTGGAGGAGCCCTGTTGG 59.647 66.667 0.00 0.00 31.76 3.77
244 245 4.250699 CCTGTTGGGGAGGGAGAA 57.749 61.111 0.00 0.00 0.00 2.87
245 246 2.715295 CCTGTTGGGGAGGGAGAAT 58.285 57.895 0.00 0.00 0.00 2.40
246 247 0.548510 CCTGTTGGGGAGGGAGAATC 59.451 60.000 0.00 0.00 0.00 2.52
247 248 0.179000 CTGTTGGGGAGGGAGAATCG 59.821 60.000 0.00 0.00 34.37 3.34
248 249 0.546747 TGTTGGGGAGGGAGAATCGT 60.547 55.000 0.00 0.00 34.37 3.73
249 250 0.107654 GTTGGGGAGGGAGAATCGTG 60.108 60.000 0.00 0.00 34.37 4.35
250 251 1.910580 TTGGGGAGGGAGAATCGTGC 61.911 60.000 0.00 0.00 34.37 5.34
251 252 2.367202 GGGGAGGGAGAATCGTGCA 61.367 63.158 0.00 0.00 34.37 4.57
252 253 1.602237 GGGAGGGAGAATCGTGCAA 59.398 57.895 0.00 0.00 34.37 4.08
253 254 0.462759 GGGAGGGAGAATCGTGCAAG 60.463 60.000 0.00 0.00 34.37 4.01
254 255 1.092345 GGAGGGAGAATCGTGCAAGC 61.092 60.000 0.00 0.00 34.37 4.01
255 256 1.424493 GAGGGAGAATCGTGCAAGCG 61.424 60.000 0.00 0.00 34.37 4.68
256 257 1.741770 GGGAGAATCGTGCAAGCGT 60.742 57.895 0.00 0.00 34.37 5.07
257 258 1.696832 GGGAGAATCGTGCAAGCGTC 61.697 60.000 0.00 0.00 34.37 5.19
258 259 1.341802 GAGAATCGTGCAAGCGTCG 59.658 57.895 0.00 0.00 0.00 5.12
259 260 1.344942 GAGAATCGTGCAAGCGTCGT 61.345 55.000 0.00 0.00 0.00 4.34
260 261 1.225475 GAATCGTGCAAGCGTCGTG 60.225 57.895 0.00 0.00 0.00 4.35
261 262 3.295228 AATCGTGCAAGCGTCGTGC 62.295 57.895 9.89 9.89 46.98 5.34
265 266 2.028337 TGCAAGCGTCGTGCACTA 59.972 55.556 16.19 0.00 46.76 2.74
266 267 1.592939 TGCAAGCGTCGTGCACTAA 60.593 52.632 16.19 0.00 46.76 2.24
267 268 1.827315 TGCAAGCGTCGTGCACTAAC 61.827 55.000 16.19 11.88 46.76 2.34
270 271 2.732094 GCGTCGTGCACTAACCGT 60.732 61.111 16.19 0.00 45.45 4.83
271 272 2.713894 GCGTCGTGCACTAACCGTC 61.714 63.158 16.19 0.00 45.45 4.79
272 273 2.423031 CGTCGTGCACTAACCGTCG 61.423 63.158 16.19 7.08 0.00 5.12
273 274 1.370900 GTCGTGCACTAACCGTCGT 60.371 57.895 16.19 0.00 0.00 4.34
274 275 1.370778 TCGTGCACTAACCGTCGTG 60.371 57.895 16.19 0.00 0.00 4.35
275 276 1.659335 CGTGCACTAACCGTCGTGT 60.659 57.895 16.19 0.00 33.78 4.49
276 277 1.850640 GTGCACTAACCGTCGTGTG 59.149 57.895 10.32 0.00 33.78 3.82
277 278 0.872881 GTGCACTAACCGTCGTGTGT 60.873 55.000 10.32 0.00 33.78 3.72
278 279 0.667453 TGCACTAACCGTCGTGTGTA 59.333 50.000 0.00 0.00 33.78 2.90
279 280 1.066757 TGCACTAACCGTCGTGTGTAA 59.933 47.619 0.00 0.00 33.78 2.41
280 281 2.126467 GCACTAACCGTCGTGTGTAAA 58.874 47.619 0.00 0.00 33.78 2.01
281 282 2.154389 GCACTAACCGTCGTGTGTAAAG 59.846 50.000 0.00 0.00 33.78 1.85
282 283 2.154389 CACTAACCGTCGTGTGTAAAGC 59.846 50.000 0.00 0.00 0.00 3.51
283 284 2.223782 ACTAACCGTCGTGTGTAAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
284 285 1.654317 AACCGTCGTGTGTAAAGCAA 58.346 45.000 0.00 0.00 0.00 3.91
285 286 1.873698 ACCGTCGTGTGTAAAGCAAT 58.126 45.000 0.00 0.00 0.00 3.56
286 287 2.215196 ACCGTCGTGTGTAAAGCAATT 58.785 42.857 0.00 0.00 0.00 2.32
287 288 2.614983 ACCGTCGTGTGTAAAGCAATTT 59.385 40.909 0.00 0.00 0.00 1.82
288 289 3.065648 ACCGTCGTGTGTAAAGCAATTTT 59.934 39.130 0.00 0.00 0.00 1.82
289 290 3.420576 CCGTCGTGTGTAAAGCAATTTTG 59.579 43.478 0.00 0.00 0.00 2.44
290 291 4.032355 CGTCGTGTGTAAAGCAATTTTGT 58.968 39.130 0.00 0.00 0.00 2.83
291 292 4.144051 CGTCGTGTGTAAAGCAATTTTGTC 59.856 41.667 0.00 0.00 0.00 3.18
292 293 5.031578 GTCGTGTGTAAAGCAATTTTGTCA 58.968 37.500 0.00 0.00 0.00 3.58
293 294 5.031578 TCGTGTGTAAAGCAATTTTGTCAC 58.968 37.500 0.00 0.00 36.45 3.67
294 295 4.206200 CGTGTGTAAAGCAATTTTGTCACC 59.794 41.667 0.00 0.00 35.78 4.02
295 296 5.348164 GTGTGTAAAGCAATTTTGTCACCT 58.652 37.500 0.00 0.00 35.78 4.00
296 297 5.231991 GTGTGTAAAGCAATTTTGTCACCTG 59.768 40.000 0.00 0.00 35.78 4.00
297 298 5.126222 TGTGTAAAGCAATTTTGTCACCTGA 59.874 36.000 0.00 0.00 35.78 3.86
298 299 6.039616 GTGTAAAGCAATTTTGTCACCTGAA 58.960 36.000 0.00 0.00 33.23 3.02
299 300 6.533367 GTGTAAAGCAATTTTGTCACCTGAAA 59.467 34.615 0.00 0.00 33.23 2.69
300 301 7.224557 GTGTAAAGCAATTTTGTCACCTGAAAT 59.775 33.333 0.00 0.00 33.23 2.17
301 302 8.417106 TGTAAAGCAATTTTGTCACCTGAAATA 58.583 29.630 0.00 0.00 0.00 1.40
302 303 7.951530 AAAGCAATTTTGTCACCTGAAATAG 57.048 32.000 0.00 0.00 0.00 1.73
303 304 6.899393 AGCAATTTTGTCACCTGAAATAGA 57.101 33.333 0.00 0.00 0.00 1.98
304 305 6.681777 AGCAATTTTGTCACCTGAAATAGAC 58.318 36.000 0.00 0.00 0.00 2.59
305 306 6.491403 AGCAATTTTGTCACCTGAAATAGACT 59.509 34.615 0.00 0.00 32.41 3.24
306 307 7.014615 AGCAATTTTGTCACCTGAAATAGACTT 59.985 33.333 0.00 0.00 32.41 3.01
307 308 7.653311 GCAATTTTGTCACCTGAAATAGACTTT 59.347 33.333 0.00 0.00 32.41 2.66
310 311 8.974060 TTTTGTCACCTGAAATAGACTTTACT 57.026 30.769 0.00 0.00 32.41 2.24
311 312 8.603242 TTTGTCACCTGAAATAGACTTTACTC 57.397 34.615 0.00 0.00 32.41 2.59
328 329 5.570205 TTACTCCGATAATAATGGCCCAA 57.430 39.130 0.00 0.00 0.00 4.12
329 330 3.751518 ACTCCGATAATAATGGCCCAAC 58.248 45.455 0.00 0.00 0.00 3.77
364 366 0.249120 CCTGCGGTATCCTCACACAA 59.751 55.000 0.00 0.00 0.00 3.33
373 375 0.036732 TCCTCACACAAGGGTCATGC 59.963 55.000 0.00 0.00 37.02 4.06
376 378 0.320683 TCACACAAGGGTCATGCGAG 60.321 55.000 0.00 0.00 0.00 5.03
450 452 3.629855 TCGCACTTTGAAAGATTGTCCAA 59.370 39.130 12.53 0.00 0.00 3.53
467 473 3.498777 GTCCAAAGCAGAAAGAGTACACC 59.501 47.826 0.00 0.00 0.00 4.16
469 475 3.499918 CCAAAGCAGAAAGAGTACACCTG 59.500 47.826 0.00 0.00 0.00 4.00
474 480 3.330267 CAGAAAGAGTACACCTGGAAGC 58.670 50.000 0.00 0.00 0.00 3.86
540 554 4.731612 CGCTGCAGGCTGACTCGT 62.732 66.667 20.86 0.00 39.13 4.18
552 566 3.278592 GACTCGTGGGTGGACCGTC 62.279 68.421 0.00 0.00 44.64 4.79
574 588 3.220674 GCCTTGGGCTCATTTCTAGAT 57.779 47.619 0.00 0.00 46.69 1.98
579 593 2.766263 TGGGCTCATTTCTAGATCGTGT 59.234 45.455 0.00 0.00 0.00 4.49
585 599 4.278310 TCATTTCTAGATCGTGTCCTCCA 58.722 43.478 0.00 0.00 0.00 3.86
609 628 1.614317 GGTACTCTGCAGCCACCAATT 60.614 52.381 20.10 0.00 31.07 2.32
610 629 2.162681 GTACTCTGCAGCCACCAATTT 58.837 47.619 9.47 0.00 0.00 1.82
619 650 3.243704 GCAGCCACCAATTTCACTGTTTA 60.244 43.478 0.00 0.00 0.00 2.01
703 734 1.237285 ATTCGTGTGGCAGCTTCACC 61.237 55.000 12.75 2.82 34.46 4.02
716 748 4.321750 GCAGCTTCACCAGTAGTACTTACA 60.322 45.833 0.00 0.00 34.56 2.41
718 750 5.864474 CAGCTTCACCAGTAGTACTTACAAG 59.136 44.000 0.00 2.42 34.56 3.16
735 767 8.800370 ACTTACAAGGGTAGAAGTAGTAGTAC 57.200 38.462 0.00 0.00 0.00 2.73
863 902 2.028567 CCAACCACTCCTCAGAACTCTC 60.029 54.545 0.00 0.00 0.00 3.20
905 952 4.385405 GCACGGCTGGCTCTCTGT 62.385 66.667 0.00 0.00 0.00 3.41
937 984 2.295070 GCCTCTTCTAGCTAGCTACCAC 59.705 54.545 20.67 2.85 0.00 4.16
938 985 3.827722 CCTCTTCTAGCTAGCTACCACT 58.172 50.000 20.67 0.00 0.00 4.00
939 986 3.818773 CCTCTTCTAGCTAGCTACCACTC 59.181 52.174 20.67 0.00 0.00 3.51
941 988 4.710324 TCTTCTAGCTAGCTACCACTCTC 58.290 47.826 20.67 0.00 0.00 3.20
942 989 3.114668 TCTAGCTAGCTACCACTCTCG 57.885 52.381 20.67 8.54 0.00 4.04
943 990 1.533731 CTAGCTAGCTACCACTCTCGC 59.466 57.143 20.67 0.00 0.00 5.03
944 991 0.394488 AGCTAGCTACCACTCTCGCA 60.394 55.000 17.69 0.00 0.00 5.10
945 992 0.030101 GCTAGCTACCACTCTCGCAG 59.970 60.000 7.70 0.00 0.00 5.18
946 993 1.669604 CTAGCTACCACTCTCGCAGA 58.330 55.000 0.00 0.00 0.00 4.26
961 1008 1.855360 CGCAGAGTAGATTTTCTCCGC 59.145 52.381 0.00 0.00 32.69 5.54
970 1017 1.059264 GATTTTCTCCGCGAACACGAG 59.941 52.381 8.23 5.15 34.06 4.18
1350 1403 3.199561 CTGCGCCCTCATCGATCGA 62.200 63.158 21.86 21.86 0.00 3.59
1353 1406 1.360551 CGCCCTCATCGATCGACTT 59.639 57.895 22.06 1.89 0.00 3.01
1355 1408 0.671251 GCCCTCATCGATCGACTTCT 59.329 55.000 22.06 0.55 0.00 2.85
1356 1409 1.067821 GCCCTCATCGATCGACTTCTT 59.932 52.381 22.06 0.09 0.00 2.52
1358 1411 2.099921 CCCTCATCGATCGACTTCTTGT 59.900 50.000 22.06 0.00 0.00 3.16
1359 1412 3.429547 CCCTCATCGATCGACTTCTTGTT 60.430 47.826 22.06 0.00 0.00 2.83
1360 1413 4.202020 CCCTCATCGATCGACTTCTTGTTA 60.202 45.833 22.06 0.00 0.00 2.41
1361 1414 5.340803 CCTCATCGATCGACTTCTTGTTAA 58.659 41.667 22.06 0.00 0.00 2.01
1362 1415 5.230306 CCTCATCGATCGACTTCTTGTTAAC 59.770 44.000 22.06 0.00 0.00 2.01
1364 1417 3.495193 TCGATCGACTTCTTGTTAACCG 58.505 45.455 15.15 0.00 0.00 4.44
1365 1418 2.027688 CGATCGACTTCTTGTTAACCGC 59.972 50.000 10.26 0.00 0.00 5.68
1367 1420 1.342174 TCGACTTCTTGTTAACCGCCT 59.658 47.619 2.48 0.00 0.00 5.52
1368 1421 1.459592 CGACTTCTTGTTAACCGCCTG 59.540 52.381 2.48 0.00 0.00 4.85
1369 1422 1.804748 GACTTCTTGTTAACCGCCTGG 59.195 52.381 2.48 0.00 42.84 4.45
1370 1423 0.521735 CTTCTTGTTAACCGCCTGGC 59.478 55.000 9.11 9.11 39.70 4.85
1371 1424 0.179015 TTCTTGTTAACCGCCTGGCA 60.179 50.000 20.29 0.00 39.70 4.92
1372 1425 0.179015 TCTTGTTAACCGCCTGGCAA 60.179 50.000 20.29 1.83 39.70 4.52
1373 1426 0.039527 CTTGTTAACCGCCTGGCAAC 60.040 55.000 20.29 15.28 39.70 4.17
1380 1433 2.512515 CGCCTGGCAACCTAGCTC 60.513 66.667 20.29 0.00 34.17 4.09
1396 1449 3.036783 CTCGCTTGCTTGCTCCTGC 62.037 63.158 0.00 0.00 40.20 4.85
1409 1462 0.531532 CTCCTGCATCGGACATGGAC 60.532 60.000 0.00 0.00 0.00 4.02
1411 1464 1.524002 CTGCATCGGACATGGACCT 59.476 57.895 0.00 0.00 0.00 3.85
1413 1466 1.524621 GCATCGGACATGGACCTGG 60.525 63.158 0.00 0.00 0.00 4.45
1414 1467 1.971505 GCATCGGACATGGACCTGGA 61.972 60.000 0.00 0.00 0.00 3.86
1415 1468 0.761187 CATCGGACATGGACCTGGAT 59.239 55.000 0.00 0.00 0.00 3.41
1416 1469 1.141657 CATCGGACATGGACCTGGATT 59.858 52.381 0.00 0.00 0.00 3.01
1417 1470 0.541392 TCGGACATGGACCTGGATTG 59.459 55.000 0.00 0.00 0.00 2.67
1418 1471 0.541392 CGGACATGGACCTGGATTGA 59.459 55.000 0.00 0.00 0.00 2.57
1419 1472 1.065491 CGGACATGGACCTGGATTGAA 60.065 52.381 0.00 0.00 0.00 2.69
1420 1473 2.648059 GGACATGGACCTGGATTGAAG 58.352 52.381 0.00 0.00 0.00 3.02
1423 1476 2.854967 ACATGGACCTGGATTGAAGGAT 59.145 45.455 0.00 0.00 38.27 3.24
1425 1478 3.370840 TGGACCTGGATTGAAGGATTG 57.629 47.619 0.00 0.00 38.27 2.67
1427 1480 3.528905 TGGACCTGGATTGAAGGATTGAT 59.471 43.478 0.00 0.00 38.27 2.57
1429 1482 4.340381 GGACCTGGATTGAAGGATTGATTG 59.660 45.833 0.00 0.00 38.27 2.67
1430 1483 4.284178 ACCTGGATTGAAGGATTGATTGG 58.716 43.478 0.00 0.00 38.27 3.16
1431 1484 4.017222 ACCTGGATTGAAGGATTGATTGGA 60.017 41.667 0.00 0.00 38.27 3.53
1432 1485 4.957954 CCTGGATTGAAGGATTGATTGGAA 59.042 41.667 0.00 0.00 36.91 3.53
1433 1486 5.163478 CCTGGATTGAAGGATTGATTGGAAC 60.163 44.000 0.00 0.00 36.91 3.62
1434 1487 4.711355 TGGATTGAAGGATTGATTGGAACC 59.289 41.667 0.00 0.00 0.00 3.62
1435 1488 4.202050 GGATTGAAGGATTGATTGGAACCG 60.202 45.833 0.00 0.00 0.00 4.44
1644 1700 4.389077 CCAGCAAACTGTAACTAGCAGTAC 59.611 45.833 2.41 0.00 45.36 2.73
1649 1705 6.398918 CAAACTGTAACTAGCAGTACCATCT 58.601 40.000 2.41 0.00 45.36 2.90
1651 1707 5.511363 ACTGTAACTAGCAGTACCATCTCT 58.489 41.667 0.16 0.00 44.41 3.10
1652 1708 6.660800 ACTGTAACTAGCAGTACCATCTCTA 58.339 40.000 0.16 0.00 44.41 2.43
1667 1728 9.823098 GTACCATCTCTACGTGTATATTTACTG 57.177 37.037 0.00 0.00 0.00 2.74
1673 1734 6.967135 TCTACGTGTATATTTACTGCTCCAG 58.033 40.000 0.00 0.00 37.52 3.86
1693 1754 7.201688 GCTCCAGATAATTTTCCTCTTCTTGTC 60.202 40.741 0.00 0.00 0.00 3.18
1732 1793 6.961554 AGCGATTAAAAATCTAAGAGCAAACG 59.038 34.615 0.00 0.00 0.00 3.60
1745 1807 2.930682 GAGCAAACGAACCCTATCAGTC 59.069 50.000 0.00 0.00 0.00 3.51
1787 1915 8.424918 ACATTATCCTATCAGTTACTTCCACTG 58.575 37.037 0.00 0.00 42.74 3.66
1818 2026 7.725818 ACAATGTATCTGATCTATGCAAGTG 57.274 36.000 0.00 3.93 0.00 3.16
1832 2040 1.122849 CAAGTGTGCATTGCGTGTTC 58.877 50.000 3.84 0.00 0.00 3.18
1869 2086 3.435026 GGTATCAATCAAGCAGCCCCTTA 60.435 47.826 0.00 0.00 0.00 2.69
1870 2087 2.897271 TCAATCAAGCAGCCCCTTAA 57.103 45.000 0.00 0.00 0.00 1.85
1871 2088 3.386932 TCAATCAAGCAGCCCCTTAAT 57.613 42.857 0.00 0.00 0.00 1.40
1872 2089 3.025978 TCAATCAAGCAGCCCCTTAATG 58.974 45.455 0.00 0.00 0.00 1.90
1873 2090 2.762327 CAATCAAGCAGCCCCTTAATGT 59.238 45.455 0.00 0.00 0.00 2.71
1874 2091 2.603075 TCAAGCAGCCCCTTAATGTT 57.397 45.000 0.00 0.00 0.00 2.71
1875 2092 2.446435 TCAAGCAGCCCCTTAATGTTC 58.554 47.619 0.00 0.00 0.00 3.18
1876 2093 2.041620 TCAAGCAGCCCCTTAATGTTCT 59.958 45.455 0.00 0.00 0.00 3.01
1877 2094 2.827921 CAAGCAGCCCCTTAATGTTCTT 59.172 45.455 0.00 0.00 0.00 2.52
1886 2103 4.010349 CCCTTAATGTTCTTCAGTGGGTC 58.990 47.826 0.00 0.00 0.00 4.46
2024 2244 2.209690 AGGGAAATGTTTACACCCGG 57.790 50.000 0.00 0.00 44.57 5.73
2025 2245 0.528924 GGGAAATGTTTACACCCGGC 59.471 55.000 0.00 0.00 0.00 6.13
2029 2249 3.887335 ATGTTTACACCCGGCGCGT 62.887 57.895 8.43 0.00 0.00 6.01
2031 2251 4.296593 TTTACACCCGGCGCGTCA 62.297 61.111 12.89 0.00 0.00 4.35
2052 2272 2.190841 CAAACTTTGGGCCGGACGT 61.191 57.895 5.05 0.00 0.00 4.34
2083 2303 0.830023 TCGATCGTGGGGGCATCATA 60.830 55.000 15.94 0.00 0.00 2.15
2087 2307 1.059584 TCGTGGGGGCATCATATGGT 61.060 55.000 2.13 0.00 0.00 3.55
2100 2320 1.414181 CATATGGTCAGAAGGGAGCGT 59.586 52.381 0.00 0.00 38.10 5.07
2148 2368 1.068474 CGTTGACTTTGGCTACTCGG 58.932 55.000 0.00 0.00 0.00 4.63
2151 2371 2.434359 ACTTTGGCTACTCGGCGC 60.434 61.111 0.00 0.00 42.02 6.53
2152 2372 2.434185 CTTTGGCTACTCGGCGCA 60.434 61.111 10.83 0.00 42.02 6.09
2174 2394 2.203126 CATCCTCTTGCTCCCCGC 60.203 66.667 0.00 0.00 39.77 6.13
2205 2425 1.216178 CAACCGTCGTTATCCCCGT 59.784 57.895 0.00 0.00 0.00 5.28
2221 2441 3.782443 GTCGTTCCCCTGCCCGAT 61.782 66.667 0.00 0.00 0.00 4.18
2274 2494 0.723981 GAGTGCGAACTGGAATGCTC 59.276 55.000 0.00 0.00 0.00 4.26
2277 2497 3.093278 CGAACTGGAATGCTCGCC 58.907 61.111 0.00 0.00 0.00 5.54
2299 2519 0.108662 CGAGCTGCTACCACACATGA 60.109 55.000 0.15 0.00 0.00 3.07
2304 2524 0.901827 TGCTACCACACATGATCGGT 59.098 50.000 0.00 4.78 35.46 4.69
2323 2544 0.240145 TGTACGAACTGGAGTGCTCG 59.760 55.000 0.00 0.41 35.21 5.03
2349 2570 1.302832 GCTGCTACCACACAAGGCT 60.303 57.895 0.00 0.00 0.00 4.58
2392 2613 3.917760 GCCGGCGAGATGCTACCT 61.918 66.667 12.58 0.00 45.43 3.08
2466 2687 1.141019 TGGCTTCGTATGAGGACGC 59.859 57.895 0.00 0.00 42.62 5.19
2467 2688 1.591863 GGCTTCGTATGAGGACGCC 60.592 63.158 0.00 1.59 42.62 5.68
2468 2689 1.141019 GCTTCGTATGAGGACGCCA 59.859 57.895 0.00 0.00 42.62 5.69
2469 2690 1.146358 GCTTCGTATGAGGACGCCAC 61.146 60.000 0.00 0.00 42.62 5.01
2470 2691 0.172578 CTTCGTATGAGGACGCCACA 59.827 55.000 0.00 0.00 42.62 4.17
2471 2692 0.108992 TTCGTATGAGGACGCCACAC 60.109 55.000 0.00 0.00 42.62 3.82
2472 2693 1.518572 CGTATGAGGACGCCACACC 60.519 63.158 0.00 0.00 35.79 4.16
2473 2694 1.594833 GTATGAGGACGCCACACCA 59.405 57.895 0.00 0.00 0.00 4.17
2474 2695 0.036765 GTATGAGGACGCCACACCAA 60.037 55.000 0.00 0.00 0.00 3.67
2475 2696 0.036765 TATGAGGACGCCACACCAAC 60.037 55.000 0.00 0.00 0.00 3.77
2476 2697 3.041940 GAGGACGCCACACCAACG 61.042 66.667 0.00 0.00 0.00 4.10
2477 2698 4.619227 AGGACGCCACACCAACGG 62.619 66.667 0.00 0.00 0.00 4.44
2480 2701 4.868116 ACGCCACACCAACGGCTT 62.868 61.111 0.00 0.00 46.62 4.35
2481 2702 4.025401 CGCCACACCAACGGCTTC 62.025 66.667 0.00 0.00 46.62 3.86
2482 2703 4.025401 GCCACACCAACGGCTTCG 62.025 66.667 0.00 0.00 45.29 3.79
2492 2713 2.575108 ACGGCTTCGTATGAGGACA 58.425 52.632 0.30 0.00 46.24 4.02
2521 2742 1.355796 CGTTTCAACCGGCATCGCTA 61.356 55.000 0.00 0.00 34.56 4.26
2528 2749 1.160329 ACCGGCATCGCTATTTGCTC 61.160 55.000 0.00 0.00 38.88 4.26
2533 2754 1.327460 GCATCGCTATTTGCTCGAACA 59.673 47.619 0.00 0.00 40.11 3.18
2605 2826 2.859165 TTTGCTAGACCAGACCAAGG 57.141 50.000 0.00 0.00 0.00 3.61
2631 2852 5.704888 TGCTACCACCGTATTTCAATTTTG 58.295 37.500 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.405872 CATGGCCCACTATGCATGTT 58.594 50.000 10.16 0.00 0.00 2.71
1 2 0.468585 CCATGGCCCACTATGCATGT 60.469 55.000 10.16 2.51 0.00 3.21
2 3 0.468585 ACCATGGCCCACTATGCATG 60.469 55.000 13.04 1.82 0.00 4.06
3 4 1.074405 CTACCATGGCCCACTATGCAT 59.926 52.381 13.04 3.79 0.00 3.96
4 5 0.473755 CTACCATGGCCCACTATGCA 59.526 55.000 13.04 0.00 0.00 3.96
5 6 0.890996 GCTACCATGGCCCACTATGC 60.891 60.000 13.04 0.97 0.00 3.14
6 7 0.473755 TGCTACCATGGCCCACTATG 59.526 55.000 13.04 0.00 0.00 2.23
7 8 1.074405 CATGCTACCATGGCCCACTAT 59.926 52.381 13.04 0.00 44.07 2.12
8 9 0.473755 CATGCTACCATGGCCCACTA 59.526 55.000 13.04 0.00 44.07 2.74
9 10 1.228228 CATGCTACCATGGCCCACT 59.772 57.895 13.04 0.00 44.07 4.00
10 11 3.846180 CATGCTACCATGGCCCAC 58.154 61.111 13.04 0.00 44.07 4.61
16 17 1.394266 GGCCAACCCATGCTACCATG 61.394 60.000 0.00 0.00 46.70 3.66
17 18 1.076044 GGCCAACCCATGCTACCAT 60.076 57.895 0.00 0.00 0.00 3.55
18 19 2.237965 AGGCCAACCCATGCTACCA 61.238 57.895 5.01 0.00 36.11 3.25
19 20 1.754234 CAGGCCAACCCATGCTACC 60.754 63.158 5.01 0.00 36.11 3.18
20 21 1.000896 ACAGGCCAACCCATGCTAC 60.001 57.895 5.01 0.00 36.11 3.58
21 22 1.302949 GACAGGCCAACCCATGCTA 59.697 57.895 5.01 0.00 36.11 3.49
22 23 2.036256 GACAGGCCAACCCATGCT 59.964 61.111 5.01 0.00 36.11 3.79
23 24 3.443045 CGACAGGCCAACCCATGC 61.443 66.667 5.01 0.00 36.11 4.06
24 25 3.443045 GCGACAGGCCAACCCATG 61.443 66.667 5.01 0.00 36.11 3.66
25 26 3.210012 AAGCGACAGGCCAACCCAT 62.210 57.895 5.01 0.00 45.17 4.00
26 27 3.842925 GAAGCGACAGGCCAACCCA 62.843 63.158 5.01 0.00 45.17 4.51
27 28 3.056328 GAAGCGACAGGCCAACCC 61.056 66.667 5.01 0.00 45.17 4.11
28 29 3.056328 GGAAGCGACAGGCCAACC 61.056 66.667 5.01 0.00 45.17 3.77
29 30 2.032681 AGGAAGCGACAGGCCAAC 59.967 61.111 5.01 0.00 45.17 3.77
30 31 2.347490 GAGGAAGCGACAGGCCAA 59.653 61.111 5.01 0.00 45.17 4.52
31 32 3.706373 GGAGGAAGCGACAGGCCA 61.706 66.667 5.01 0.00 45.17 5.36
32 33 3.672295 CTGGAGGAAGCGACAGGCC 62.672 68.421 0.00 0.00 45.17 5.19
33 34 2.125350 CTGGAGGAAGCGACAGGC 60.125 66.667 0.00 0.00 44.05 4.85
34 35 2.581354 CCTGGAGGAAGCGACAGG 59.419 66.667 0.00 0.00 43.87 4.00
35 36 2.125350 GCCTGGAGGAAGCGACAG 60.125 66.667 0.00 0.00 37.39 3.51
36 37 2.604686 AGCCTGGAGGAAGCGACA 60.605 61.111 0.00 0.00 37.39 4.35
37 38 2.185608 GAGCCTGGAGGAAGCGAC 59.814 66.667 0.00 0.00 37.39 5.19
38 39 3.452786 CGAGCCTGGAGGAAGCGA 61.453 66.667 0.00 0.00 37.39 4.93
39 40 4.521062 CCGAGCCTGGAGGAAGCG 62.521 72.222 0.00 0.00 37.39 4.68
40 41 4.168291 CCCGAGCCTGGAGGAAGC 62.168 72.222 0.00 0.00 37.39 3.86
41 42 4.168291 GCCCGAGCCTGGAGGAAG 62.168 72.222 0.00 0.00 37.39 3.46
42 43 4.722535 AGCCCGAGCCTGGAGGAA 62.723 66.667 0.00 0.00 41.25 3.36
43 44 4.722535 AAGCCCGAGCCTGGAGGA 62.723 66.667 0.00 0.00 41.25 3.71
44 45 4.479993 CAAGCCCGAGCCTGGAGG 62.480 72.222 0.00 0.00 41.25 4.30
48 49 3.259633 AACTCCAAGCCCGAGCCTG 62.260 63.158 0.00 0.00 41.25 4.85
49 50 2.930562 AACTCCAAGCCCGAGCCT 60.931 61.111 0.00 0.00 41.25 4.58
50 51 2.747855 CAACTCCAAGCCCGAGCC 60.748 66.667 0.00 0.00 41.25 4.70
51 52 2.032681 ACAACTCCAAGCCCGAGC 59.967 61.111 0.00 0.00 40.32 5.03
52 53 0.390472 GAGACAACTCCAAGCCCGAG 60.390 60.000 0.00 0.00 37.19 4.63
53 54 1.118965 TGAGACAACTCCAAGCCCGA 61.119 55.000 0.00 0.00 41.99 5.14
54 55 0.671781 CTGAGACAACTCCAAGCCCG 60.672 60.000 0.00 0.00 41.99 6.13
55 56 0.957888 GCTGAGACAACTCCAAGCCC 60.958 60.000 0.00 0.00 41.99 5.19
56 57 0.036022 AGCTGAGACAACTCCAAGCC 59.964 55.000 0.00 0.00 40.66 4.35
57 58 1.803555 GAAGCTGAGACAACTCCAAGC 59.196 52.381 0.00 0.00 41.99 4.01
58 59 3.065655 CTGAAGCTGAGACAACTCCAAG 58.934 50.000 0.00 0.00 41.99 3.61
59 60 2.224378 CCTGAAGCTGAGACAACTCCAA 60.224 50.000 0.00 0.00 41.99 3.53
60 61 1.345741 CCTGAAGCTGAGACAACTCCA 59.654 52.381 0.00 0.00 41.99 3.86
61 62 1.338579 CCCTGAAGCTGAGACAACTCC 60.339 57.143 0.00 0.00 41.99 3.85
62 63 1.620819 TCCCTGAAGCTGAGACAACTC 59.379 52.381 0.00 0.00 42.88 3.01
63 64 1.722034 TCCCTGAAGCTGAGACAACT 58.278 50.000 0.00 0.00 0.00 3.16
64 65 2.550180 GTTTCCCTGAAGCTGAGACAAC 59.450 50.000 0.00 0.00 0.00 3.32
65 66 2.487265 GGTTTCCCTGAAGCTGAGACAA 60.487 50.000 0.00 0.00 0.00 3.18
66 67 1.072331 GGTTTCCCTGAAGCTGAGACA 59.928 52.381 0.00 0.00 0.00 3.41
67 68 1.072331 TGGTTTCCCTGAAGCTGAGAC 59.928 52.381 0.00 0.00 0.00 3.36
68 69 1.434188 TGGTTTCCCTGAAGCTGAGA 58.566 50.000 0.00 0.00 0.00 3.27
69 70 2.157738 CTTGGTTTCCCTGAAGCTGAG 58.842 52.381 0.00 0.00 0.00 3.35
70 71 1.202927 CCTTGGTTTCCCTGAAGCTGA 60.203 52.381 0.00 0.00 0.00 4.26
71 72 1.251251 CCTTGGTTTCCCTGAAGCTG 58.749 55.000 0.00 0.00 0.00 4.24
72 73 0.540597 GCCTTGGTTTCCCTGAAGCT 60.541 55.000 0.00 0.00 0.00 3.74
73 74 0.827507 TGCCTTGGTTTCCCTGAAGC 60.828 55.000 0.00 0.00 0.00 3.86
74 75 1.821136 GATGCCTTGGTTTCCCTGAAG 59.179 52.381 0.00 0.00 0.00 3.02
75 76 1.549950 GGATGCCTTGGTTTCCCTGAA 60.550 52.381 0.00 0.00 0.00 3.02
76 77 0.039618 GGATGCCTTGGTTTCCCTGA 59.960 55.000 0.00 0.00 0.00 3.86
77 78 0.040204 AGGATGCCTTGGTTTCCCTG 59.960 55.000 6.45 0.00 0.00 4.45
78 79 0.786435 AAGGATGCCTTGGTTTCCCT 59.214 50.000 0.00 0.00 42.96 4.20
79 80 1.186200 GAAGGATGCCTTGGTTTCCC 58.814 55.000 2.98 0.00 44.82 3.97
80 81 1.546029 GTGAAGGATGCCTTGGTTTCC 59.454 52.381 2.98 2.98 44.82 3.13
81 82 1.546029 GGTGAAGGATGCCTTGGTTTC 59.454 52.381 2.98 0.00 44.82 2.78
82 83 1.147817 AGGTGAAGGATGCCTTGGTTT 59.852 47.619 2.98 0.00 44.82 3.27
83 84 0.779997 AGGTGAAGGATGCCTTGGTT 59.220 50.000 2.98 0.00 44.82 3.67
84 85 0.038744 CAGGTGAAGGATGCCTTGGT 59.961 55.000 2.98 0.00 44.82 3.67
85 86 0.329261 TCAGGTGAAGGATGCCTTGG 59.671 55.000 2.98 0.00 44.82 3.61
86 87 2.089980 CTTCAGGTGAAGGATGCCTTG 58.910 52.381 11.31 0.00 44.82 3.61
96 97 0.106708 AGCAACGCTCTTCAGGTGAA 59.893 50.000 0.00 0.00 30.62 3.18
97 98 0.966179 TAGCAACGCTCTTCAGGTGA 59.034 50.000 0.00 0.00 40.44 4.02
98 99 1.067565 TCTAGCAACGCTCTTCAGGTG 60.068 52.381 0.00 0.00 40.44 4.00
99 100 1.067495 GTCTAGCAACGCTCTTCAGGT 60.067 52.381 0.00 0.00 40.44 4.00
100 101 1.067565 TGTCTAGCAACGCTCTTCAGG 60.068 52.381 0.00 0.00 40.44 3.86
101 102 2.095008 TCTGTCTAGCAACGCTCTTCAG 60.095 50.000 0.00 0.41 40.44 3.02
102 103 1.886542 TCTGTCTAGCAACGCTCTTCA 59.113 47.619 0.00 0.00 40.44 3.02
103 104 2.255316 GTCTGTCTAGCAACGCTCTTC 58.745 52.381 0.00 0.00 40.44 2.87
104 105 1.401670 CGTCTGTCTAGCAACGCTCTT 60.402 52.381 0.00 0.00 40.44 2.85
105 106 0.169230 CGTCTGTCTAGCAACGCTCT 59.831 55.000 0.00 0.00 40.44 4.09
106 107 0.168348 TCGTCTGTCTAGCAACGCTC 59.832 55.000 0.00 0.00 40.44 5.03
107 108 0.811915 ATCGTCTGTCTAGCAACGCT 59.188 50.000 0.00 0.00 43.41 5.07
108 109 0.917259 CATCGTCTGTCTAGCAACGC 59.083 55.000 12.31 0.00 34.25 4.84
109 110 0.917259 GCATCGTCTGTCTAGCAACG 59.083 55.000 11.57 11.57 34.96 4.10
110 111 1.134965 AGGCATCGTCTGTCTAGCAAC 60.135 52.381 0.00 0.00 38.30 4.17
111 112 1.134995 CAGGCATCGTCTGTCTAGCAA 60.135 52.381 0.00 0.00 37.87 3.91
112 113 0.457443 CAGGCATCGTCTGTCTAGCA 59.543 55.000 0.00 0.00 37.87 3.49
113 114 0.873743 GCAGGCATCGTCTGTCTAGC 60.874 60.000 0.00 0.00 37.87 3.42
114 115 0.457443 TGCAGGCATCGTCTGTCTAG 59.543 55.000 0.00 0.00 37.87 2.43
115 116 0.173481 GTGCAGGCATCGTCTGTCTA 59.827 55.000 0.00 0.00 37.87 2.59
116 117 1.079543 GTGCAGGCATCGTCTGTCT 60.080 57.895 0.00 0.00 41.73 3.41
117 118 2.447887 CGTGCAGGCATCGTCTGTC 61.448 63.158 0.00 0.00 37.61 3.51
118 119 2.433145 CGTGCAGGCATCGTCTGT 60.433 61.111 0.00 0.00 37.61 3.41
119 120 3.190849 CCGTGCAGGCATCGTCTG 61.191 66.667 0.00 0.00 38.44 3.51
131 132 3.507924 TTCATGCATCGGCCGTGC 61.508 61.111 32.27 32.27 42.81 5.34
132 133 2.404789 GTTCATGCATCGGCCGTG 59.595 61.111 27.15 22.51 40.13 4.94
133 134 2.923426 ATCGTTCATGCATCGGCCGT 62.923 55.000 27.15 10.00 40.13 5.68
134 135 1.775039 AATCGTTCATGCATCGGCCG 61.775 55.000 22.12 22.12 40.13 6.13
135 136 0.040958 GAATCGTTCATGCATCGGCC 60.041 55.000 0.00 0.00 40.13 6.13
136 137 0.657312 TGAATCGTTCATGCATCGGC 59.343 50.000 0.00 0.00 36.06 5.54
145 146 2.267426 CTGCCACGTATGAATCGTTCA 58.733 47.619 0.00 3.49 45.01 3.18
146 147 1.004927 GCTGCCACGTATGAATCGTTC 60.005 52.381 0.00 0.00 39.55 3.95
147 148 1.006832 GCTGCCACGTATGAATCGTT 58.993 50.000 0.00 0.00 39.55 3.85
148 149 0.108377 TGCTGCCACGTATGAATCGT 60.108 50.000 0.00 0.00 42.33 3.73
149 150 0.301687 GTGCTGCCACGTATGAATCG 59.698 55.000 0.00 0.00 31.34 3.34
150 151 0.657840 GGTGCTGCCACGTATGAATC 59.342 55.000 0.00 0.00 43.00 2.52
151 152 0.035534 TGGTGCTGCCACGTATGAAT 60.036 50.000 0.00 0.00 43.61 2.57
152 153 0.673333 CTGGTGCTGCCACGTATGAA 60.673 55.000 0.00 0.00 43.61 2.57
153 154 1.079197 CTGGTGCTGCCACGTATGA 60.079 57.895 0.00 0.00 43.61 2.15
154 155 2.753966 GCTGGTGCTGCCACGTATG 61.754 63.158 0.00 0.00 43.61 2.39
155 156 2.436646 GCTGGTGCTGCCACGTAT 60.437 61.111 0.00 0.00 43.61 3.06
156 157 3.881952 CTGCTGGTGCTGCCACGTA 62.882 63.158 0.00 0.00 43.61 3.57
166 167 2.434884 AATCGGTCGCTGCTGGTG 60.435 61.111 0.00 0.00 0.00 4.17
167 168 2.125512 GAATCGGTCGCTGCTGGT 60.126 61.111 0.00 0.00 0.00 4.00
168 169 1.880340 GAGAATCGGTCGCTGCTGG 60.880 63.158 0.00 0.00 0.00 4.85
169 170 0.737367 TTGAGAATCGGTCGCTGCTG 60.737 55.000 0.00 0.00 38.61 4.41
170 171 0.176680 ATTGAGAATCGGTCGCTGCT 59.823 50.000 0.00 0.00 38.61 4.24
171 172 1.009829 AATTGAGAATCGGTCGCTGC 58.990 50.000 0.00 0.00 38.61 5.25
172 173 4.857871 TTTAATTGAGAATCGGTCGCTG 57.142 40.909 0.00 0.00 38.61 5.18
173 174 5.873179 TTTTTAATTGAGAATCGGTCGCT 57.127 34.783 0.00 0.00 38.61 4.93
193 194 0.961753 GGTAGCTGCTGGTGCTTTTT 59.038 50.000 13.43 0.00 41.46 1.94
194 195 1.237285 CGGTAGCTGCTGGTGCTTTT 61.237 55.000 13.43 0.00 41.46 2.27
195 196 1.672356 CGGTAGCTGCTGGTGCTTT 60.672 57.895 13.43 0.00 41.46 3.51
196 197 2.046892 CGGTAGCTGCTGGTGCTT 60.047 61.111 13.43 0.00 41.46 3.91
197 198 3.314331 ACGGTAGCTGCTGGTGCT 61.314 61.111 15.55 5.30 43.79 4.40
198 199 3.121030 CACGGTAGCTGCTGGTGC 61.121 66.667 15.55 3.82 40.20 5.01
199 200 3.121030 GCACGGTAGCTGCTGGTG 61.121 66.667 15.55 17.25 0.00 4.17
200 201 4.742201 CGCACGGTAGCTGCTGGT 62.742 66.667 15.55 4.70 32.03 4.00
201 202 4.742201 ACGCACGGTAGCTGCTGG 62.742 66.667 15.55 5.28 32.03 4.85
202 203 3.481903 CACGCACGGTAGCTGCTG 61.482 66.667 13.43 9.34 32.03 4.41
203 204 4.742201 CCACGCACGGTAGCTGCT 62.742 66.667 7.57 7.57 32.03 4.24
204 205 4.735132 TCCACGCACGGTAGCTGC 62.735 66.667 0.00 0.00 0.00 5.25
205 206 2.507102 CTCCACGCACGGTAGCTG 60.507 66.667 0.00 0.00 0.00 4.24
206 207 3.760035 CCTCCACGCACGGTAGCT 61.760 66.667 0.00 0.00 0.00 3.32
207 208 3.701604 CTCCTCCACGCACGGTAGC 62.702 68.421 0.00 0.00 0.00 3.58
208 209 2.490217 CTCCTCCACGCACGGTAG 59.510 66.667 0.00 0.00 0.00 3.18
209 210 3.755628 GCTCCTCCACGCACGGTA 61.756 66.667 0.00 0.00 0.00 4.02
213 214 4.767255 CAGGGCTCCTCCACGCAC 62.767 72.222 0.00 0.00 36.21 5.34
215 216 4.021925 AACAGGGCTCCTCCACGC 62.022 66.667 0.00 0.00 36.21 5.34
216 217 2.046892 CAACAGGGCTCCTCCACG 60.047 66.667 0.00 0.00 36.21 4.94
217 218 2.352805 CCAACAGGGCTCCTCCAC 59.647 66.667 0.00 0.00 36.21 4.02
218 219 2.935481 CCCAACAGGGCTCCTCCA 60.935 66.667 0.00 0.00 35.34 3.86
227 228 0.548510 GATTCTCCCTCCCCAACAGG 59.451 60.000 0.00 0.00 0.00 4.00
228 229 0.179000 CGATTCTCCCTCCCCAACAG 59.821 60.000 0.00 0.00 0.00 3.16
229 230 0.546747 ACGATTCTCCCTCCCCAACA 60.547 55.000 0.00 0.00 0.00 3.33
230 231 0.107654 CACGATTCTCCCTCCCCAAC 60.108 60.000 0.00 0.00 0.00 3.77
231 232 1.910580 GCACGATTCTCCCTCCCCAA 61.911 60.000 0.00 0.00 0.00 4.12
232 233 2.367202 GCACGATTCTCCCTCCCCA 61.367 63.158 0.00 0.00 0.00 4.96
233 234 1.910580 TTGCACGATTCTCCCTCCCC 61.911 60.000 0.00 0.00 0.00 4.81
234 235 0.462759 CTTGCACGATTCTCCCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
235 236 1.092345 GCTTGCACGATTCTCCCTCC 61.092 60.000 0.00 0.00 0.00 4.30
236 237 1.424493 CGCTTGCACGATTCTCCCTC 61.424 60.000 0.00 0.00 34.06 4.30
237 238 1.448540 CGCTTGCACGATTCTCCCT 60.449 57.895 0.00 0.00 34.06 4.20
238 239 1.696832 GACGCTTGCACGATTCTCCC 61.697 60.000 3.48 0.00 36.70 4.30
239 240 1.710339 GACGCTTGCACGATTCTCC 59.290 57.895 3.48 0.00 36.70 3.71
240 241 1.341802 CGACGCTTGCACGATTCTC 59.658 57.895 3.48 0.00 36.70 2.87
241 242 1.372997 ACGACGCTTGCACGATTCT 60.373 52.632 3.48 0.00 36.70 2.40
242 243 1.225475 CACGACGCTTGCACGATTC 60.225 57.895 3.48 0.00 36.70 2.52
243 244 2.853210 CACGACGCTTGCACGATT 59.147 55.556 3.48 0.00 36.70 3.34
244 245 3.777925 GCACGACGCTTGCACGAT 61.778 61.111 3.48 0.00 39.93 3.73
249 250 1.154654 GTTAGTGCACGACGCTTGC 60.155 57.895 12.01 3.65 43.06 4.01
250 251 1.491563 GGTTAGTGCACGACGCTTG 59.508 57.895 12.01 0.00 43.06 4.01
251 252 2.019951 CGGTTAGTGCACGACGCTT 61.020 57.895 12.01 0.00 43.06 4.68
252 253 2.430244 CGGTTAGTGCACGACGCT 60.430 61.111 12.01 0.00 43.06 5.07
253 254 2.713894 GACGGTTAGTGCACGACGC 61.714 63.158 19.78 12.28 42.89 5.19
254 255 2.423031 CGACGGTTAGTGCACGACG 61.423 63.158 12.01 16.25 39.01 5.12
255 256 1.370900 ACGACGGTTAGTGCACGAC 60.371 57.895 12.01 14.04 0.00 4.34
256 257 1.370778 CACGACGGTTAGTGCACGA 60.371 57.895 12.01 2.52 0.00 4.35
257 258 1.659335 ACACGACGGTTAGTGCACG 60.659 57.895 12.01 0.95 41.72 5.34
258 259 0.872881 ACACACGACGGTTAGTGCAC 60.873 55.000 9.40 9.40 41.72 4.57
259 260 0.667453 TACACACGACGGTTAGTGCA 59.333 50.000 14.69 0.00 41.72 4.57
260 261 1.769733 TTACACACGACGGTTAGTGC 58.230 50.000 14.69 0.00 41.72 4.40
261 262 2.154389 GCTTTACACACGACGGTTAGTG 59.846 50.000 13.63 13.63 43.46 2.74
262 263 2.223782 TGCTTTACACACGACGGTTAGT 60.224 45.455 0.00 0.00 0.00 2.24
263 264 2.396601 TGCTTTACACACGACGGTTAG 58.603 47.619 0.00 0.00 0.00 2.34
264 265 2.505628 TGCTTTACACACGACGGTTA 57.494 45.000 0.00 0.00 0.00 2.85
265 266 1.654317 TTGCTTTACACACGACGGTT 58.346 45.000 0.00 0.00 0.00 4.44
266 267 1.873698 ATTGCTTTACACACGACGGT 58.126 45.000 0.00 0.00 0.00 4.83
267 268 2.961522 AATTGCTTTACACACGACGG 57.038 45.000 0.00 0.00 0.00 4.79
268 269 4.032355 ACAAAATTGCTTTACACACGACG 58.968 39.130 0.00 0.00 0.00 5.12
269 270 5.031578 TGACAAAATTGCTTTACACACGAC 58.968 37.500 0.00 0.00 0.00 4.34
270 271 5.031578 GTGACAAAATTGCTTTACACACGA 58.968 37.500 0.00 0.00 35.44 4.35
271 272 4.206200 GGTGACAAAATTGCTTTACACACG 59.794 41.667 0.00 0.00 36.27 4.49
272 273 5.231991 CAGGTGACAAAATTGCTTTACACAC 59.768 40.000 0.00 0.00 36.27 3.82
273 274 5.126222 TCAGGTGACAAAATTGCTTTACACA 59.874 36.000 0.00 0.00 36.27 3.72
274 275 5.587289 TCAGGTGACAAAATTGCTTTACAC 58.413 37.500 0.00 0.00 35.02 2.90
275 276 5.843673 TCAGGTGACAAAATTGCTTTACA 57.156 34.783 0.00 0.00 0.00 2.41
276 277 7.713764 ATTTCAGGTGACAAAATTGCTTTAC 57.286 32.000 0.00 0.00 0.00 2.01
277 278 8.855110 TCTATTTCAGGTGACAAAATTGCTTTA 58.145 29.630 0.00 0.00 32.40 1.85
278 279 7.653311 GTCTATTTCAGGTGACAAAATTGCTTT 59.347 33.333 0.00 0.00 32.40 3.51
279 280 7.014615 AGTCTATTTCAGGTGACAAAATTGCTT 59.985 33.333 0.00 0.00 32.40 3.91
280 281 6.491403 AGTCTATTTCAGGTGACAAAATTGCT 59.509 34.615 0.00 0.00 32.40 3.91
281 282 6.681777 AGTCTATTTCAGGTGACAAAATTGC 58.318 36.000 0.00 0.00 32.40 3.56
284 285 9.574516 AGTAAAGTCTATTTCAGGTGACAAAAT 57.425 29.630 0.00 0.00 33.95 1.82
285 286 8.974060 AGTAAAGTCTATTTCAGGTGACAAAA 57.026 30.769 0.00 0.00 32.41 2.44
286 287 7.660208 GGAGTAAAGTCTATTTCAGGTGACAAA 59.340 37.037 0.00 0.00 32.41 2.83
287 288 7.159372 GGAGTAAAGTCTATTTCAGGTGACAA 58.841 38.462 0.00 0.00 32.41 3.18
288 289 6.571731 CGGAGTAAAGTCTATTTCAGGTGACA 60.572 42.308 0.00 0.00 32.41 3.58
289 290 5.805994 CGGAGTAAAGTCTATTTCAGGTGAC 59.194 44.000 0.00 0.00 0.00 3.67
290 291 5.713389 TCGGAGTAAAGTCTATTTCAGGTGA 59.287 40.000 0.00 0.00 0.00 4.02
291 292 5.962433 TCGGAGTAAAGTCTATTTCAGGTG 58.038 41.667 0.00 0.00 0.00 4.00
292 293 6.793505 ATCGGAGTAAAGTCTATTTCAGGT 57.206 37.500 0.00 0.00 0.00 4.00
298 299 9.654663 GCCATTATTATCGGAGTAAAGTCTATT 57.345 33.333 0.00 0.00 0.00 1.73
299 300 8.258708 GGCCATTATTATCGGAGTAAAGTCTAT 58.741 37.037 0.00 0.00 0.00 1.98
300 301 7.310237 GGGCCATTATTATCGGAGTAAAGTCTA 60.310 40.741 4.39 0.00 0.00 2.59
301 302 6.465084 GGCCATTATTATCGGAGTAAAGTCT 58.535 40.000 0.00 0.00 0.00 3.24
302 303 5.642491 GGGCCATTATTATCGGAGTAAAGTC 59.358 44.000 4.39 0.00 0.00 3.01
303 304 5.072600 TGGGCCATTATTATCGGAGTAAAGT 59.927 40.000 0.00 0.00 0.00 2.66
304 305 5.556915 TGGGCCATTATTATCGGAGTAAAG 58.443 41.667 0.00 0.00 0.00 1.85
305 306 5.570205 TGGGCCATTATTATCGGAGTAAA 57.430 39.130 0.00 0.00 0.00 2.01
306 307 5.310451 GTTGGGCCATTATTATCGGAGTAA 58.690 41.667 7.26 0.00 0.00 2.24
307 308 4.263156 GGTTGGGCCATTATTATCGGAGTA 60.263 45.833 7.26 0.00 37.17 2.59
308 309 3.497942 GGTTGGGCCATTATTATCGGAGT 60.498 47.826 7.26 0.00 37.17 3.85
309 310 3.081804 GGTTGGGCCATTATTATCGGAG 58.918 50.000 7.26 0.00 37.17 4.63
310 311 2.443632 TGGTTGGGCCATTATTATCGGA 59.556 45.455 7.26 0.00 43.61 4.55
311 312 2.870175 TGGTTGGGCCATTATTATCGG 58.130 47.619 7.26 0.00 43.61 4.18
347 348 0.249120 CCTTGTGTGAGGATACCGCA 59.751 55.000 0.00 0.00 39.25 5.69
364 366 2.568623 AGTTTTTCTCGCATGACCCT 57.431 45.000 0.00 0.00 0.00 4.34
373 375 5.344884 GGATGGAGAGAGTAGTTTTTCTCG 58.655 45.833 0.00 0.00 43.57 4.04
376 378 4.434520 CCGGATGGAGAGAGTAGTTTTTC 58.565 47.826 0.00 0.00 37.49 2.29
450 452 2.972713 TCCAGGTGTACTCTTTCTGCTT 59.027 45.455 0.00 0.00 0.00 3.91
467 473 1.071605 CGTTTCCTCGAAGCTTCCAG 58.928 55.000 20.62 17.02 0.00 3.86
469 475 1.792006 TTCGTTTCCTCGAAGCTTCC 58.208 50.000 20.62 3.83 43.36 3.46
540 554 4.954118 AGGCAGACGGTCCACCCA 62.954 66.667 12.12 0.00 0.00 4.51
574 588 1.005569 AGTACCATCTGGAGGACACGA 59.994 52.381 2.55 0.00 38.94 4.35
579 593 1.007118 TGCAGAGTACCATCTGGAGGA 59.993 52.381 12.58 0.00 45.66 3.71
585 599 0.539051 GTGGCTGCAGAGTACCATCT 59.461 55.000 20.43 0.00 34.04 2.90
619 650 9.334947 CAAGTGTCAATCCTAATCATAATCACT 57.665 33.333 0.00 0.00 33.63 3.41
626 657 4.858850 TGCCAAGTGTCAATCCTAATCAT 58.141 39.130 0.00 0.00 0.00 2.45
627 658 4.299586 TGCCAAGTGTCAATCCTAATCA 57.700 40.909 0.00 0.00 0.00 2.57
677 708 1.073964 CTGCCACACGAATCTCACTG 58.926 55.000 0.00 0.00 0.00 3.66
703 734 7.700022 ACTTCTACCCTTGTAAGTACTACTG 57.300 40.000 0.00 0.00 0.00 2.74
797 836 8.328758 TGTCCTAATCAACTGTCCATTTTATCT 58.671 33.333 0.00 0.00 0.00 1.98
798 837 8.506168 TGTCCTAATCAACTGTCCATTTTATC 57.494 34.615 0.00 0.00 0.00 1.75
805 844 5.497464 TCAATGTCCTAATCAACTGTCCA 57.503 39.130 0.00 0.00 0.00 4.02
812 851 8.690203 TTCAAAGTCTTCAATGTCCTAATCAA 57.310 30.769 0.00 0.00 0.00 2.57
863 902 8.004344 GCAGTGCAATAATTACTGATAACTACG 58.996 37.037 11.09 0.00 43.35 3.51
938 985 4.640789 GGAGAAAATCTACTCTGCGAGA 57.359 45.455 11.64 0.00 33.32 4.04
943 990 3.422417 TCGCGGAGAAAATCTACTCTG 57.578 47.619 6.13 0.00 41.01 3.35
944 991 3.192844 TGTTCGCGGAGAAAATCTACTCT 59.807 43.478 6.13 0.00 41.10 3.24
945 992 3.303760 GTGTTCGCGGAGAAAATCTACTC 59.696 47.826 6.13 0.00 41.10 2.59
946 993 3.251571 GTGTTCGCGGAGAAAATCTACT 58.748 45.455 6.13 0.00 41.10 2.57
947 994 2.027688 CGTGTTCGCGGAGAAAATCTAC 59.972 50.000 6.13 0.00 41.10 2.59
948 995 2.095110 TCGTGTTCGCGGAGAAAATCTA 60.095 45.455 6.13 0.00 41.10 1.98
949 996 1.068474 CGTGTTCGCGGAGAAAATCT 58.932 50.000 6.13 0.00 41.10 2.40
950 997 1.059264 CTCGTGTTCGCGGAGAAAATC 59.941 52.381 6.13 0.00 41.10 2.17
951 998 1.068474 CTCGTGTTCGCGGAGAAAAT 58.932 50.000 6.13 0.00 41.10 1.82
961 1008 3.771160 CCCTCCCCCTCGTGTTCG 61.771 72.222 0.00 0.00 38.55 3.95
970 1017 2.554564 CGCTTAATTATTCCCCTCCCCC 60.555 54.545 0.00 0.00 0.00 5.40
1317 1370 4.767255 CAGACCTGGGTGGAGCGC 62.767 72.222 0.00 0.00 39.71 5.92
1350 1403 1.892209 CCAGGCGGTTAACAAGAAGT 58.108 50.000 8.10 0.00 0.00 3.01
1353 1406 0.179015 TTGCCAGGCGGTTAACAAGA 60.179 50.000 7.03 0.00 33.28 3.02
1355 1408 1.457009 GGTTGCCAGGCGGTTAACAA 61.457 55.000 7.03 0.00 34.85 2.83
1356 1409 1.899534 GGTTGCCAGGCGGTTAACA 60.900 57.895 7.03 0.00 34.85 2.41
1358 1411 0.035820 CTAGGTTGCCAGGCGGTTAA 60.036 55.000 7.03 0.00 33.28 2.01
1359 1412 1.600107 CTAGGTTGCCAGGCGGTTA 59.400 57.895 7.03 0.00 33.28 2.85
1360 1413 2.351276 CTAGGTTGCCAGGCGGTT 59.649 61.111 7.03 0.00 33.28 4.44
1361 1414 4.410400 GCTAGGTTGCCAGGCGGT 62.410 66.667 7.03 0.00 33.28 5.68
1362 1415 4.101448 AGCTAGGTTGCCAGGCGG 62.101 66.667 7.03 0.00 0.00 6.13
1364 1417 2.512515 CGAGCTAGGTTGCCAGGC 60.513 66.667 3.66 3.66 0.00 4.85
1365 1418 2.512515 GCGAGCTAGGTTGCCAGG 60.513 66.667 21.43 0.00 0.00 4.45
1367 1420 1.375908 CAAGCGAGCTAGGTTGCCA 60.376 57.895 26.83 0.00 41.69 4.92
1368 1421 3.490890 CAAGCGAGCTAGGTTGCC 58.509 61.111 26.83 11.92 41.69 4.52
1370 1423 0.445436 CAAGCAAGCGAGCTAGGTTG 59.555 55.000 27.84 27.84 45.89 3.77
1371 1424 1.301677 GCAAGCAAGCGAGCTAGGTT 61.302 55.000 5.37 5.37 45.89 3.50
1372 1425 1.743252 GCAAGCAAGCGAGCTAGGT 60.743 57.895 6.37 0.00 45.89 3.08
1373 1426 1.427592 GAGCAAGCAAGCGAGCTAGG 61.428 60.000 12.81 3.98 45.89 3.02
1396 1449 0.761187 ATCCAGGTCCATGTCCGATG 59.239 55.000 0.00 0.00 0.00 3.84
1409 1462 4.539726 TCCAATCAATCCTTCAATCCAGG 58.460 43.478 0.00 0.00 0.00 4.45
1411 1464 4.711355 GGTTCCAATCAATCCTTCAATCCA 59.289 41.667 0.00 0.00 0.00 3.41
1413 1466 4.399303 ACGGTTCCAATCAATCCTTCAATC 59.601 41.667 0.00 0.00 0.00 2.67
1414 1467 4.158394 CACGGTTCCAATCAATCCTTCAAT 59.842 41.667 0.00 0.00 0.00 2.57
1415 1468 3.505680 CACGGTTCCAATCAATCCTTCAA 59.494 43.478 0.00 0.00 0.00 2.69
1416 1469 3.081061 CACGGTTCCAATCAATCCTTCA 58.919 45.455 0.00 0.00 0.00 3.02
1417 1470 2.423538 CCACGGTTCCAATCAATCCTTC 59.576 50.000 0.00 0.00 0.00 3.46
1418 1471 2.041081 TCCACGGTTCCAATCAATCCTT 59.959 45.455 0.00 0.00 0.00 3.36
1419 1472 1.633432 TCCACGGTTCCAATCAATCCT 59.367 47.619 0.00 0.00 0.00 3.24
1420 1473 2.122783 TCCACGGTTCCAATCAATCC 57.877 50.000 0.00 0.00 0.00 3.01
1423 1476 2.560542 CCAAATCCACGGTTCCAATCAA 59.439 45.455 0.00 0.00 0.00 2.57
1425 1478 2.442413 TCCAAATCCACGGTTCCAATC 58.558 47.619 0.00 0.00 0.00 2.67
1427 1480 2.595750 ATCCAAATCCACGGTTCCAA 57.404 45.000 0.00 0.00 0.00 3.53
1429 1482 2.092592 ACCTATCCAAATCCACGGTTCC 60.093 50.000 0.00 0.00 0.00 3.62
1430 1483 2.943033 CACCTATCCAAATCCACGGTTC 59.057 50.000 0.00 0.00 0.00 3.62
1431 1484 2.307686 ACACCTATCCAAATCCACGGTT 59.692 45.455 0.00 0.00 0.00 4.44
1432 1485 1.913419 ACACCTATCCAAATCCACGGT 59.087 47.619 0.00 0.00 0.00 4.83
1433 1486 2.288666 CACACCTATCCAAATCCACGG 58.711 52.381 0.00 0.00 0.00 4.94
1434 1487 2.288666 CCACACCTATCCAAATCCACG 58.711 52.381 0.00 0.00 0.00 4.94
1435 1488 2.241176 TCCCACACCTATCCAAATCCAC 59.759 50.000 0.00 0.00 0.00 4.02
1611 1667 4.232061 TTTGCTGGTGGGGGTGGG 62.232 66.667 0.00 0.00 0.00 4.61
1644 1700 7.594714 AGCAGTAAATATACACGTAGAGATGG 58.405 38.462 0.00 0.00 34.29 3.51
1649 1705 6.769341 TCTGGAGCAGTAAATATACACGTAGA 59.231 38.462 0.00 0.00 34.29 2.59
1651 1707 6.947644 TCTGGAGCAGTAAATATACACGTA 57.052 37.500 0.00 0.00 34.29 3.57
1652 1708 5.847111 TCTGGAGCAGTAAATATACACGT 57.153 39.130 0.00 0.00 34.29 4.49
1667 1728 6.601217 ACAAGAAGAGGAAAATTATCTGGAGC 59.399 38.462 0.00 0.00 0.00 4.70
1673 1734 7.201565 CGACCAGACAAGAAGAGGAAAATTATC 60.202 40.741 0.00 0.00 0.00 1.75
1732 1793 4.828072 AAAGGAGTGACTGATAGGGTTC 57.172 45.455 0.00 0.00 0.00 3.62
1745 1807 8.115490 AGGATAATGTCAAAGAAAAAGGAGTG 57.885 34.615 0.00 0.00 0.00 3.51
1787 1915 7.485277 GCATAGATCAGATACATTGTACGTACC 59.515 40.741 22.43 5.58 0.00 3.34
1818 2026 1.002468 ACAGAAGAACACGCAATGCAC 60.002 47.619 5.91 0.00 0.00 4.57
1832 2040 5.667539 TTGATACCTTGAGAGGACAGAAG 57.332 43.478 0.00 0.00 46.74 2.85
1869 2086 5.071788 TGAACTAGACCCACTGAAGAACATT 59.928 40.000 0.00 0.00 0.00 2.71
1870 2087 4.593206 TGAACTAGACCCACTGAAGAACAT 59.407 41.667 0.00 0.00 0.00 2.71
1871 2088 3.964688 TGAACTAGACCCACTGAAGAACA 59.035 43.478 0.00 0.00 0.00 3.18
1872 2089 4.602340 TGAACTAGACCCACTGAAGAAC 57.398 45.455 0.00 0.00 0.00 3.01
1873 2090 5.047021 CAGATGAACTAGACCCACTGAAGAA 60.047 44.000 0.00 0.00 0.00 2.52
1874 2091 4.464244 CAGATGAACTAGACCCACTGAAGA 59.536 45.833 0.00 0.00 0.00 2.87
1875 2092 4.221703 ACAGATGAACTAGACCCACTGAAG 59.778 45.833 0.00 0.00 0.00 3.02
1876 2093 4.160329 ACAGATGAACTAGACCCACTGAA 58.840 43.478 0.00 0.00 0.00 3.02
1877 2094 3.764434 GACAGATGAACTAGACCCACTGA 59.236 47.826 0.00 0.00 0.00 3.41
1886 2103 5.102953 TGGGAAATGGACAGATGAACTAG 57.897 43.478 0.00 0.00 0.00 2.57
2024 2244 2.010817 CAAAGTTTGCCTGACGCGC 61.011 57.895 5.73 0.00 42.08 6.86
2025 2245 1.370414 CCAAAGTTTGCCTGACGCG 60.370 57.895 10.25 3.53 42.08 6.01
2029 2249 2.199652 CGGCCCAAAGTTTGCCTGA 61.200 57.895 10.25 0.00 43.12 3.86
2031 2251 2.917227 CCGGCCCAAAGTTTGCCT 60.917 61.111 10.25 0.00 43.12 4.75
2033 2253 2.338620 GTCCGGCCCAAAGTTTGC 59.661 61.111 10.25 0.00 0.00 3.68
2035 2255 2.190841 CACGTCCGGCCCAAAGTTT 61.191 57.895 0.00 0.00 0.00 2.66
2066 2286 1.679944 CCATATGATGCCCCCACGATC 60.680 57.143 3.65 0.00 0.00 3.69
2083 2303 0.904865 TCACGCTCCCTTCTGACCAT 60.905 55.000 0.00 0.00 0.00 3.55
2087 2307 2.283529 GGGTCACGCTCCCTTCTGA 61.284 63.158 3.34 0.00 41.58 3.27
2100 2320 1.638589 CAAAGGGATAAGGTGGGGTCA 59.361 52.381 0.00 0.00 0.00 4.02
2148 2368 1.817099 CAAGAGGATGGGAGTGCGC 60.817 63.158 0.00 0.00 0.00 6.09
2151 2371 0.179936 GGAGCAAGAGGATGGGAGTG 59.820 60.000 0.00 0.00 0.00 3.51
2152 2372 0.985490 GGGAGCAAGAGGATGGGAGT 60.985 60.000 0.00 0.00 0.00 3.85
2174 2394 3.047877 GGTTGACGGGGAAGCACG 61.048 66.667 0.00 0.00 0.00 5.34
2205 2425 1.682451 CTAATCGGGCAGGGGAACGA 61.682 60.000 0.00 0.00 39.85 3.85
2218 2438 2.726180 CTCGCCGGCGTCTAATCG 60.726 66.667 44.16 21.97 40.74 3.34
2221 2441 4.492160 CAGCTCGCCGGCGTCTAA 62.492 66.667 44.16 26.97 40.74 2.10
2277 2497 4.435436 TGTGGTAGCAGCTCGCCG 62.435 66.667 0.00 0.00 44.04 6.46
2299 2519 1.201647 CACTCCAGTTCGTACACCGAT 59.798 52.381 0.00 0.00 46.75 4.18
2304 2524 0.240145 CGAGCACTCCAGTTCGTACA 59.760 55.000 0.00 0.00 0.00 2.90
2349 2570 2.014857 CTCCAGTTCGATCGTACTCCA 58.985 52.381 22.55 12.02 0.00 3.86
2475 2696 0.527817 GGTGTCCTCATACGAAGCCG 60.528 60.000 0.00 0.00 42.50 5.52
2476 2697 0.535335 TGGTGTCCTCATACGAAGCC 59.465 55.000 0.00 0.00 0.00 4.35
2477 2698 1.067142 TGTGGTGTCCTCATACGAAGC 60.067 52.381 0.00 0.00 0.00 3.86
2478 2699 2.607187 GTGTGGTGTCCTCATACGAAG 58.393 52.381 0.00 0.00 29.60 3.79
2479 2700 1.274167 GGTGTGGTGTCCTCATACGAA 59.726 52.381 0.00 0.00 29.60 3.85
2480 2701 0.892755 GGTGTGGTGTCCTCATACGA 59.107 55.000 0.00 0.00 29.60 3.43
2481 2702 0.606096 TGGTGTGGTGTCCTCATACG 59.394 55.000 0.00 0.00 29.60 3.06
2482 2703 2.423577 GTTGGTGTGGTGTCCTCATAC 58.576 52.381 0.00 0.00 29.60 2.39
2483 2704 1.001520 CGTTGGTGTGGTGTCCTCATA 59.998 52.381 0.00 0.00 29.60 2.15
2484 2705 0.250295 CGTTGGTGTGGTGTCCTCAT 60.250 55.000 0.00 0.00 29.60 2.90
2485 2706 1.145156 CGTTGGTGTGGTGTCCTCA 59.855 57.895 0.00 0.00 0.00 3.86
2486 2707 0.463116 AACGTTGGTGTGGTGTCCTC 60.463 55.000 0.00 0.00 0.00 3.71
2487 2708 0.034863 AAACGTTGGTGTGGTGTCCT 60.035 50.000 0.00 0.00 0.00 3.85
2488 2709 0.379316 GAAACGTTGGTGTGGTGTCC 59.621 55.000 0.00 0.00 0.00 4.02
2489 2710 1.088306 TGAAACGTTGGTGTGGTGTC 58.912 50.000 0.00 0.00 0.00 3.67
2490 2711 1.200484 GTTGAAACGTTGGTGTGGTGT 59.800 47.619 0.00 0.00 0.00 4.16
2491 2712 1.468395 GGTTGAAACGTTGGTGTGGTG 60.468 52.381 0.00 0.00 0.00 4.17
2492 2713 0.812549 GGTTGAAACGTTGGTGTGGT 59.187 50.000 0.00 0.00 0.00 4.16
2521 2742 4.900635 AAAGACACTTGTTCGAGCAAAT 57.099 36.364 15.75 2.78 0.00 2.32
2594 2815 1.202891 GGTAGCAAACCTTGGTCTGGT 60.203 52.381 3.28 3.28 45.75 4.00
2605 2826 4.752661 TTGAAATACGGTGGTAGCAAAC 57.247 40.909 0.00 0.00 30.81 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.