Multiple sequence alignment - TraesCS3A01G071600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G071600 chr3A 100.000 4581 0 0 1 4581 44435704 44431124 0.000000e+00 8460.0
1 TraesCS3A01G071600 chr3A 94.207 328 19 0 1 328 716637099 716636772 6.840000e-138 501.0
2 TraesCS3A01G071600 chr3A 91.958 286 22 1 2121 2406 535000411 535000695 2.570000e-107 399.0
3 TraesCS3A01G071600 chr3A 90.637 267 25 0 2477 2743 535001308 535001574 5.640000e-94 355.0
4 TraesCS3A01G071600 chr3A 87.075 294 29 4 1472 1765 534998741 534999025 1.590000e-84 324.0
5 TraesCS3A01G071600 chr3A 86.973 261 31 2 1826 2086 534999029 534999286 1.610000e-74 291.0
6 TraesCS3A01G071600 chr3A 90.728 151 12 1 2860 3010 535001640 535001788 2.800000e-47 200.0
7 TraesCS3A01G071600 chr3A 84.884 172 20 3 3313 3483 535002494 535002660 7.880000e-38 169.0
8 TraesCS3A01G071600 chr3D 90.373 1797 94 17 2810 4581 31725835 31724093 0.000000e+00 2287.0
9 TraesCS3A01G071600 chr3D 89.385 1253 84 20 576 1793 31728031 31726793 0.000000e+00 1531.0
10 TraesCS3A01G071600 chr3D 94.518 985 34 10 1828 2794 31726804 31725822 0.000000e+00 1502.0
11 TraesCS3A01G071600 chr3D 89.720 321 25 3 2090 2406 415540922 415540606 1.980000e-108 403.0
12 TraesCS3A01G071600 chr3D 90.530 264 25 0 2483 2746 415539999 415539736 2.620000e-92 350.0
13 TraesCS3A01G071600 chr3D 87.075 294 29 3 1472 1765 415542391 415542107 1.590000e-84 324.0
14 TraesCS3A01G071600 chr3D 88.550 262 27 2 1829 2090 415542100 415541842 9.570000e-82 315.0
15 TraesCS3A01G071600 chr3D 93.651 189 9 3 327 512 31728593 31728405 3.490000e-71 279.0
16 TraesCS3A01G071600 chr3D 88.554 166 16 2 2860 3025 415539672 415539510 1.010000e-46 198.0
17 TraesCS3A01G071600 chr3D 84.135 208 23 6 3305 3511 415538801 415538603 4.680000e-45 193.0
18 TraesCS3A01G071600 chr3D 95.556 45 2 0 518 562 31728073 31728029 6.360000e-09 73.1
19 TraesCS3A01G071600 chr3B 97.427 583 14 1 3999 4581 53815512 53814931 0.000000e+00 992.0
20 TraesCS3A01G071600 chr3B 89.140 442 33 6 2810 3239 53816144 53815706 1.880000e-148 536.0
21 TraesCS3A01G071600 chr3B 93.617 329 21 0 1 329 2501474 2501802 4.120000e-135 492.0
22 TraesCS3A01G071600 chr3B 93.353 331 20 2 1 329 59705018 59704688 5.330000e-134 488.0
23 TraesCS3A01G071600 chr3B 93.333 330 21 1 1 329 441626267 441625938 1.920000e-133 486.0
24 TraesCS3A01G071600 chr3B 88.820 322 28 5 2090 2406 541521575 541521257 5.560000e-104 388.0
25 TraesCS3A01G071600 chr3B 92.015 263 21 0 2484 2746 541520649 541520387 2.010000e-98 370.0
26 TraesCS3A01G071600 chr3B 88.435 294 25 3 1472 1765 541523039 541522755 3.390000e-91 346.0
27 TraesCS3A01G071600 chr3B 87.833 263 29 2 1829 2091 541522748 541522489 5.760000e-79 305.0
28 TraesCS3A01G071600 chr3B 91.156 147 11 1 2864 3010 541520320 541520176 1.010000e-46 198.0
29 TraesCS3A01G071600 chr3B 98.507 67 1 0 2728 2794 53816197 53816131 8.050000e-23 119.0
30 TraesCS3A01G071600 chr6B 83.671 790 93 23 1004 1784 681085870 681086632 0.000000e+00 712.0
31 TraesCS3A01G071600 chr6B 91.615 322 24 1 2089 2410 681087647 681087965 4.210000e-120 442.0
32 TraesCS3A01G071600 chr6B 84.340 447 57 8 1339 1783 681413145 681413580 4.240000e-115 425.0
33 TraesCS3A01G071600 chr6B 90.402 323 28 1 2088 2410 681414588 681414907 5.480000e-114 422.0
34 TraesCS3A01G071600 chr6B 92.395 263 20 0 2484 2746 681088384 681088646 4.330000e-100 375.0
35 TraesCS3A01G071600 chr6B 89.161 286 29 1 2461 2746 681415301 681415584 5.640000e-94 355.0
36 TraesCS3A01G071600 chr6B 89.922 258 22 4 1837 2091 681086639 681086895 3.420000e-86 329.0
37 TraesCS3A01G071600 chr6B 91.561 237 15 5 1858 2091 681413579 681413813 5.720000e-84 322.0
38 TraesCS3A01G071600 chr6D 83.355 769 96 20 1013 1778 449481585 449482324 0.000000e+00 682.0
39 TraesCS3A01G071600 chr6D 93.598 328 21 0 1 328 464465672 464465999 1.480000e-134 490.0
40 TraesCS3A01G071600 chr6D 91.331 323 25 1 2088 2410 449483385 449483704 5.440000e-119 438.0
41 TraesCS3A01G071600 chr6D 90.909 286 24 1 2461 2746 449484094 449484377 2.590000e-102 383.0
42 TraesCS3A01G071600 chr6D 91.463 246 17 4 1848 2091 449482366 449482609 7.340000e-88 335.0
43 TraesCS3A01G071600 chr6A 83.097 775 102 23 1015 1783 595182882 595183633 0.000000e+00 678.0
44 TraesCS3A01G071600 chr6A 90.031 321 29 1 2090 2410 595184335 595184652 3.300000e-111 412.0
45 TraesCS3A01G071600 chr6A 89.860 286 27 1 2461 2746 595185072 595185355 2.600000e-97 366.0
46 TraesCS3A01G071600 chr6A 91.803 244 16 4 1850 2091 595183660 595183901 2.040000e-88 337.0
47 TraesCS3A01G071600 chrUn 93.598 328 21 0 1 328 83928741 83928414 1.480000e-134 490.0
48 TraesCS3A01G071600 chr5B 93.293 328 22 0 1 328 10581354 10581681 6.890000e-133 484.0
49 TraesCS3A01G071600 chr5B 93.293 328 22 0 1 328 680927546 680927873 6.890000e-133 484.0
50 TraesCS3A01G071600 chr1B 93.272 327 22 0 1 327 429010340 429010666 2.480000e-132 483.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G071600 chr3A 44431124 44435704 4580 True 8460.000000 8460 100.000000 1 4581 1 chr3A.!!$R1 4580
1 TraesCS3A01G071600 chr3A 534998741 535002660 3919 False 289.666667 399 88.709167 1472 3483 6 chr3A.!!$F1 2011
2 TraesCS3A01G071600 chr3D 31724093 31728593 4500 True 1134.420000 2287 92.696600 327 4581 5 chr3D.!!$R1 4254
3 TraesCS3A01G071600 chr3D 415538603 415542391 3788 True 297.166667 403 88.094000 1472 3511 6 chr3D.!!$R2 2039
4 TraesCS3A01G071600 chr3B 53814931 53816197 1266 True 549.000000 992 95.024667 2728 4581 3 chr3B.!!$R3 1853
5 TraesCS3A01G071600 chr3B 541520176 541523039 2863 True 321.400000 388 89.651800 1472 3010 5 chr3B.!!$R4 1538
6 TraesCS3A01G071600 chr6B 681085870 681088646 2776 False 464.500000 712 89.400750 1004 2746 4 chr6B.!!$F1 1742
7 TraesCS3A01G071600 chr6B 681413145 681415584 2439 False 381.000000 425 88.866000 1339 2746 4 chr6B.!!$F2 1407
8 TraesCS3A01G071600 chr6D 449481585 449484377 2792 False 459.500000 682 89.264500 1013 2746 4 chr6D.!!$F2 1733
9 TraesCS3A01G071600 chr6A 595182882 595185355 2473 False 448.250000 678 88.697750 1015 2746 4 chr6A.!!$F1 1731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.032952 TCTGGTGTCCGTTGTACAGC 59.967 55.0 0.00 0.0 43.82 4.40 F
384 385 0.034616 GGCTTCGATGGCTATGAGCT 59.965 55.0 16.43 0.0 41.99 4.09 F
1116 1469 0.329261 CATGGGAGCAGGAGGTTCAA 59.671 55.0 0.00 0.0 0.00 2.69 F
2800 5045 0.260816 AGTACTCTACCATCCCCGCA 59.739 55.0 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1919 0.181350 CCCCCTCAGCATCAACTACC 59.819 60.0 0.00 0.0 0.00 3.18 R
1633 2003 0.618107 TGCCGGTATAACCCCACTCA 60.618 55.0 1.90 0.0 33.75 3.41 R
2992 5246 0.112218 TGTGTTGGGGCTATTGCAGT 59.888 50.0 0.66 0.0 41.91 4.40 R
3952 6683 1.025041 CTGTGAGACCGATCCGATCA 58.975 55.0 9.07 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.816537 TTTGCTCGGATCTCCTCGG 59.183 57.895 0.00 0.00 0.00 4.63
19 20 0.970937 TTTGCTCGGATCTCCTCGGT 60.971 55.000 0.00 0.00 0.00 4.69
20 21 1.667154 TTGCTCGGATCTCCTCGGTG 61.667 60.000 0.00 0.00 0.00 4.94
21 22 2.122167 GCTCGGATCTCCTCGGTGT 61.122 63.158 0.00 0.00 0.00 4.16
22 23 1.668101 GCTCGGATCTCCTCGGTGTT 61.668 60.000 0.00 0.00 0.00 3.32
23 24 0.382515 CTCGGATCTCCTCGGTGTTC 59.617 60.000 0.00 0.00 0.00 3.18
24 25 1.064296 CGGATCTCCTCGGTGTTCG 59.936 63.158 0.00 0.00 40.90 3.95
25 26 1.654954 CGGATCTCCTCGGTGTTCGT 61.655 60.000 0.00 0.00 40.32 3.85
26 27 0.100861 GGATCTCCTCGGTGTTCGTC 59.899 60.000 0.00 0.00 40.32 4.20
27 28 1.096416 GATCTCCTCGGTGTTCGTCT 58.904 55.000 0.00 0.00 40.32 4.18
28 29 2.286872 GATCTCCTCGGTGTTCGTCTA 58.713 52.381 0.00 0.00 40.32 2.59
29 30 1.446907 TCTCCTCGGTGTTCGTCTAC 58.553 55.000 0.00 0.00 40.32 2.59
30 31 1.002888 TCTCCTCGGTGTTCGTCTACT 59.997 52.381 0.00 0.00 40.32 2.57
31 32 1.811359 CTCCTCGGTGTTCGTCTACTT 59.189 52.381 0.00 0.00 40.32 2.24
32 33 2.228343 CTCCTCGGTGTTCGTCTACTTT 59.772 50.000 0.00 0.00 40.32 2.66
33 34 2.227388 TCCTCGGTGTTCGTCTACTTTC 59.773 50.000 0.00 0.00 40.32 2.62
34 35 2.240040 CTCGGTGTTCGTCTACTTTCG 58.760 52.381 0.00 0.00 40.32 3.46
35 36 1.603802 TCGGTGTTCGTCTACTTTCGT 59.396 47.619 0.00 0.00 40.32 3.85
36 37 1.712350 CGGTGTTCGTCTACTTTCGTG 59.288 52.381 0.00 0.00 0.00 4.35
37 38 2.735823 GGTGTTCGTCTACTTTCGTGT 58.264 47.619 0.00 0.00 0.00 4.49
38 39 2.470257 GGTGTTCGTCTACTTTCGTGTG 59.530 50.000 0.00 0.00 0.00 3.82
39 40 3.111098 GTGTTCGTCTACTTTCGTGTGT 58.889 45.455 0.00 0.00 0.00 3.72
40 41 3.179206 GTGTTCGTCTACTTTCGTGTGTC 59.821 47.826 0.00 0.00 0.00 3.67
41 42 3.065786 TGTTCGTCTACTTTCGTGTGTCT 59.934 43.478 0.00 0.00 0.00 3.41
42 43 3.976793 TCGTCTACTTTCGTGTGTCTT 57.023 42.857 0.00 0.00 0.00 3.01
43 44 3.881795 TCGTCTACTTTCGTGTGTCTTC 58.118 45.455 0.00 0.00 0.00 2.87
44 45 2.650765 CGTCTACTTTCGTGTGTCTTCG 59.349 50.000 0.00 0.00 0.00 3.79
45 46 2.978489 GTCTACTTTCGTGTGTCTTCGG 59.022 50.000 0.00 0.00 0.00 4.30
46 47 2.030540 TCTACTTTCGTGTGTCTTCGGG 60.031 50.000 0.00 0.00 0.00 5.14
47 48 0.462789 ACTTTCGTGTGTCTTCGGGT 59.537 50.000 0.00 0.00 0.00 5.28
48 49 1.134610 ACTTTCGTGTGTCTTCGGGTT 60.135 47.619 0.00 0.00 0.00 4.11
49 50 1.260561 CTTTCGTGTGTCTTCGGGTTG 59.739 52.381 0.00 0.00 0.00 3.77
50 51 0.460722 TTCGTGTGTCTTCGGGTTGA 59.539 50.000 0.00 0.00 0.00 3.18
51 52 0.460722 TCGTGTGTCTTCGGGTTGAA 59.539 50.000 0.00 0.00 34.74 2.69
52 53 1.069513 TCGTGTGTCTTCGGGTTGAAT 59.930 47.619 0.00 0.00 35.63 2.57
53 54 1.459592 CGTGTGTCTTCGGGTTGAATC 59.540 52.381 0.00 0.00 35.63 2.52
54 55 1.804748 GTGTGTCTTCGGGTTGAATCC 59.195 52.381 0.00 0.00 35.63 3.01
55 56 1.697432 TGTGTCTTCGGGTTGAATCCT 59.303 47.619 0.00 0.00 35.63 3.24
56 57 2.105821 TGTGTCTTCGGGTTGAATCCTT 59.894 45.455 0.00 0.00 35.63 3.36
57 58 2.742589 GTGTCTTCGGGTTGAATCCTTC 59.257 50.000 0.00 0.00 35.63 3.46
58 59 2.290071 TGTCTTCGGGTTGAATCCTTCC 60.290 50.000 0.00 0.00 35.63 3.46
59 60 1.982226 TCTTCGGGTTGAATCCTTCCA 59.018 47.619 0.00 0.00 35.63 3.53
60 61 2.373836 TCTTCGGGTTGAATCCTTCCAA 59.626 45.455 0.00 0.00 35.63 3.53
61 62 2.194201 TCGGGTTGAATCCTTCCAAC 57.806 50.000 0.00 0.00 41.24 3.77
67 68 3.671716 GTTGAATCCTTCCAACCTACGT 58.328 45.455 0.00 0.00 37.32 3.57
68 69 4.070009 GTTGAATCCTTCCAACCTACGTT 58.930 43.478 0.00 0.00 37.32 3.99
69 70 5.240121 GTTGAATCCTTCCAACCTACGTTA 58.760 41.667 0.00 0.00 37.32 3.18
70 71 5.687166 TGAATCCTTCCAACCTACGTTAT 57.313 39.130 0.00 0.00 0.00 1.89
71 72 6.057321 TGAATCCTTCCAACCTACGTTATT 57.943 37.500 0.00 0.00 0.00 1.40
72 73 6.110707 TGAATCCTTCCAACCTACGTTATTC 58.889 40.000 0.00 0.00 0.00 1.75
73 74 5.952347 ATCCTTCCAACCTACGTTATTCT 57.048 39.130 0.00 0.00 0.00 2.40
74 75 5.750352 TCCTTCCAACCTACGTTATTCTT 57.250 39.130 0.00 0.00 0.00 2.52
75 76 5.727434 TCCTTCCAACCTACGTTATTCTTC 58.273 41.667 0.00 0.00 0.00 2.87
76 77 4.565564 CCTTCCAACCTACGTTATTCTTCG 59.434 45.833 0.00 0.00 0.00 3.79
77 78 4.789012 TCCAACCTACGTTATTCTTCGT 57.211 40.909 0.00 0.00 42.82 3.85
78 79 4.737054 TCCAACCTACGTTATTCTTCGTC 58.263 43.478 0.00 0.00 40.70 4.20
79 80 4.460382 TCCAACCTACGTTATTCTTCGTCT 59.540 41.667 0.00 0.00 40.70 4.18
80 81 4.561606 CCAACCTACGTTATTCTTCGTCTG 59.438 45.833 0.00 0.00 40.70 3.51
81 82 5.159209 CAACCTACGTTATTCTTCGTCTGT 58.841 41.667 0.00 0.00 40.70 3.41
82 83 4.730657 ACCTACGTTATTCTTCGTCTGTG 58.269 43.478 0.00 0.00 40.70 3.66
83 84 4.103357 CCTACGTTATTCTTCGTCTGTGG 58.897 47.826 0.00 0.00 40.70 4.17
84 85 2.334838 ACGTTATTCTTCGTCTGTGGC 58.665 47.619 0.00 0.00 35.30 5.01
85 86 1.320555 CGTTATTCTTCGTCTGTGGCG 59.679 52.381 0.00 0.00 0.00 5.69
86 87 1.659098 GTTATTCTTCGTCTGTGGCGG 59.341 52.381 0.00 0.00 0.00 6.13
87 88 0.892755 TATTCTTCGTCTGTGGCGGT 59.107 50.000 0.00 0.00 0.00 5.68
88 89 0.034896 ATTCTTCGTCTGTGGCGGTT 59.965 50.000 0.00 0.00 0.00 4.44
89 90 0.878523 TTCTTCGTCTGTGGCGGTTG 60.879 55.000 0.00 0.00 0.00 3.77
90 91 2.954753 CTTCGTCTGTGGCGGTTGC 61.955 63.158 0.00 0.00 41.71 4.17
91 92 3.454587 TTCGTCTGTGGCGGTTGCT 62.455 57.895 0.00 0.00 42.25 3.91
92 93 3.716006 CGTCTGTGGCGGTTGCTG 61.716 66.667 0.00 0.00 42.25 4.41
93 94 2.591715 GTCTGTGGCGGTTGCTGT 60.592 61.111 0.00 0.00 42.25 4.40
94 95 2.186826 GTCTGTGGCGGTTGCTGTT 61.187 57.895 0.00 0.00 42.25 3.16
95 96 1.891919 TCTGTGGCGGTTGCTGTTC 60.892 57.895 0.00 0.00 42.25 3.18
96 97 1.893808 CTGTGGCGGTTGCTGTTCT 60.894 57.895 0.00 0.00 42.25 3.01
97 98 2.121564 CTGTGGCGGTTGCTGTTCTG 62.122 60.000 0.00 0.00 42.25 3.02
98 99 2.594303 TGGCGGTTGCTGTTCTGG 60.594 61.111 0.00 0.00 42.25 3.86
99 100 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
100 101 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
101 102 2.908073 GCGGTTGCTGTTCTGGTGG 61.908 63.158 0.00 0.00 38.39 4.61
102 103 2.260869 CGGTTGCTGTTCTGGTGGG 61.261 63.158 0.00 0.00 0.00 4.61
103 104 2.564721 GGTTGCTGTTCTGGTGGGC 61.565 63.158 0.00 0.00 0.00 5.36
104 105 1.529244 GTTGCTGTTCTGGTGGGCT 60.529 57.895 0.00 0.00 0.00 5.19
105 106 1.529010 TTGCTGTTCTGGTGGGCTG 60.529 57.895 0.00 0.00 0.00 4.85
106 107 2.674380 GCTGTTCTGGTGGGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
107 108 2.839098 CTGTTCTGGTGGGCTGGT 59.161 61.111 0.00 0.00 0.00 4.00
108 109 1.302832 CTGTTCTGGTGGGCTGGTC 60.303 63.158 0.00 0.00 0.00 4.02
109 110 2.034221 GTTCTGGTGGGCTGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
110 111 2.121963 TTCTGGTGGGCTGGTCCT 60.122 61.111 0.00 0.00 34.39 3.85
111 112 1.159905 TTCTGGTGGGCTGGTCCTA 59.840 57.895 0.00 0.00 34.39 2.94
112 113 0.253160 TTCTGGTGGGCTGGTCCTAT 60.253 55.000 0.00 0.00 34.39 2.57
113 114 0.982852 TCTGGTGGGCTGGTCCTATG 60.983 60.000 0.00 0.00 34.39 2.23
114 115 1.987807 CTGGTGGGCTGGTCCTATGG 61.988 65.000 0.00 0.00 34.39 2.74
115 116 2.757124 GGTGGGCTGGTCCTATGGG 61.757 68.421 0.00 0.00 34.39 4.00
116 117 2.368192 TGGGCTGGTCCTATGGGG 60.368 66.667 0.00 0.00 34.39 4.96
117 118 3.890926 GGGCTGGTCCTATGGGGC 61.891 72.222 0.00 0.00 36.26 5.80
124 125 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
125 126 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
126 127 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
127 128 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
128 129 0.034059 CTATGGGGCCTTAGCACGAG 59.966 60.000 0.84 0.00 46.55 4.18
129 130 0.397957 TATGGGGCCTTAGCACGAGA 60.398 55.000 0.84 0.00 46.55 4.04
130 131 1.271840 ATGGGGCCTTAGCACGAGAA 61.272 55.000 0.84 0.00 46.55 2.87
131 132 1.449778 GGGGCCTTAGCACGAGAAC 60.450 63.158 0.84 0.00 46.55 3.01
132 133 1.597461 GGGCCTTAGCACGAGAACT 59.403 57.895 0.84 0.00 42.56 3.01
133 134 0.036294 GGGCCTTAGCACGAGAACTT 60.036 55.000 0.84 0.00 42.56 2.66
134 135 1.360820 GGCCTTAGCACGAGAACTTC 58.639 55.000 0.00 0.00 42.56 3.01
135 136 1.360820 GCCTTAGCACGAGAACTTCC 58.639 55.000 0.00 0.00 39.53 3.46
136 137 2.007547 GCCTTAGCACGAGAACTTCCC 61.008 57.143 0.00 0.00 39.53 3.97
137 138 1.630148 CTTAGCACGAGAACTTCCCG 58.370 55.000 0.00 0.00 0.00 5.14
138 139 1.201647 CTTAGCACGAGAACTTCCCGA 59.798 52.381 0.00 0.00 0.00 5.14
139 140 0.524862 TAGCACGAGAACTTCCCGAC 59.475 55.000 0.00 0.00 0.00 4.79
140 141 1.179814 AGCACGAGAACTTCCCGACT 61.180 55.000 0.00 0.00 0.00 4.18
141 142 1.009389 GCACGAGAACTTCCCGACTG 61.009 60.000 0.00 0.00 0.00 3.51
142 143 0.314302 CACGAGAACTTCCCGACTGT 59.686 55.000 0.00 0.00 0.00 3.55
143 144 0.597072 ACGAGAACTTCCCGACTGTC 59.403 55.000 0.00 0.00 0.00 3.51
144 145 0.882474 CGAGAACTTCCCGACTGTCT 59.118 55.000 6.21 0.00 0.00 3.41
145 146 2.082231 CGAGAACTTCCCGACTGTCTA 58.918 52.381 6.21 0.00 0.00 2.59
146 147 2.159544 CGAGAACTTCCCGACTGTCTAC 60.160 54.545 6.21 0.00 0.00 2.59
147 148 3.083293 GAGAACTTCCCGACTGTCTACT 58.917 50.000 6.21 0.00 0.00 2.57
148 149 4.260170 GAGAACTTCCCGACTGTCTACTA 58.740 47.826 6.21 0.00 0.00 1.82
149 150 4.009002 AGAACTTCCCGACTGTCTACTAC 58.991 47.826 6.21 0.00 0.00 2.73
150 151 3.430042 ACTTCCCGACTGTCTACTACA 57.570 47.619 6.21 0.00 36.42 2.74
151 152 3.759581 ACTTCCCGACTGTCTACTACAA 58.240 45.455 6.21 0.00 37.74 2.41
152 153 4.342359 ACTTCCCGACTGTCTACTACAAT 58.658 43.478 6.21 0.00 37.74 2.71
153 154 5.503927 ACTTCCCGACTGTCTACTACAATA 58.496 41.667 6.21 0.00 37.74 1.90
154 155 5.948162 ACTTCCCGACTGTCTACTACAATAA 59.052 40.000 6.21 0.00 37.74 1.40
155 156 6.095160 ACTTCCCGACTGTCTACTACAATAAG 59.905 42.308 6.21 0.00 37.74 1.73
156 157 5.503927 TCCCGACTGTCTACTACAATAAGT 58.496 41.667 6.21 0.00 37.74 2.24
157 158 5.948162 TCCCGACTGTCTACTACAATAAGTT 59.052 40.000 6.21 0.00 37.74 2.66
158 159 6.034591 CCCGACTGTCTACTACAATAAGTTG 58.965 44.000 6.21 0.00 37.74 3.16
167 168 2.561478 ACAATAAGTTGTGCCCGACT 57.439 45.000 0.00 0.00 46.43 4.18
168 169 2.423577 ACAATAAGTTGTGCCCGACTC 58.576 47.619 0.00 0.00 46.43 3.36
169 170 1.737793 CAATAAGTTGTGCCCGACTCC 59.262 52.381 0.00 0.00 34.00 3.85
170 171 0.108329 ATAAGTTGTGCCCGACTCCG 60.108 55.000 0.00 0.00 34.00 4.63
171 172 1.180456 TAAGTTGTGCCCGACTCCGA 61.180 55.000 0.00 0.00 34.00 4.55
172 173 1.827399 AAGTTGTGCCCGACTCCGAT 61.827 55.000 0.00 0.00 34.00 4.18
173 174 2.100631 GTTGTGCCCGACTCCGATG 61.101 63.158 0.00 0.00 38.22 3.84
174 175 2.279810 TTGTGCCCGACTCCGATGA 61.280 57.895 0.00 0.00 38.22 2.92
175 176 1.613317 TTGTGCCCGACTCCGATGAT 61.613 55.000 0.00 0.00 38.22 2.45
176 177 1.592669 GTGCCCGACTCCGATGATG 60.593 63.158 0.00 0.00 38.22 3.07
177 178 2.029666 GCCCGACTCCGATGATGG 59.970 66.667 0.00 0.00 38.22 3.51
178 179 2.498941 GCCCGACTCCGATGATGGA 61.499 63.158 0.00 0.00 38.22 3.41
184 185 3.970332 TCCGATGATGGAGGGGTG 58.030 61.111 0.00 0.00 33.05 4.61
185 186 1.313129 TCCGATGATGGAGGGGTGA 59.687 57.895 0.00 0.00 33.05 4.02
186 187 0.104986 TCCGATGATGGAGGGGTGAT 60.105 55.000 0.00 0.00 33.05 3.06
187 188 0.035881 CCGATGATGGAGGGGTGATG 59.964 60.000 0.00 0.00 0.00 3.07
188 189 1.051008 CGATGATGGAGGGGTGATGA 58.949 55.000 0.00 0.00 0.00 2.92
189 190 1.270518 CGATGATGGAGGGGTGATGAC 60.271 57.143 0.00 0.00 0.00 3.06
190 191 0.761187 ATGATGGAGGGGTGATGACG 59.239 55.000 0.00 0.00 0.00 4.35
191 192 1.337384 TGATGGAGGGGTGATGACGG 61.337 60.000 0.00 0.00 0.00 4.79
192 193 2.666596 GATGGAGGGGTGATGACGGC 62.667 65.000 0.00 0.00 0.00 5.68
193 194 4.530857 GGAGGGGTGATGACGGCG 62.531 72.222 4.80 4.80 0.00 6.46
194 195 4.530857 GAGGGGTGATGACGGCGG 62.531 72.222 13.24 0.00 0.00 6.13
213 214 3.491652 GCACCTTCGGCTCGCTTC 61.492 66.667 0.00 0.00 0.00 3.86
214 215 2.048222 CACCTTCGGCTCGCTTCA 60.048 61.111 0.00 0.00 0.00 3.02
215 216 2.097038 CACCTTCGGCTCGCTTCAG 61.097 63.158 0.00 0.00 0.00 3.02
216 217 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
217 218 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
218 219 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
219 220 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
220 221 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
221 222 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
222 223 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
223 224 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
224 225 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
225 226 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
226 227 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
227 228 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
228 229 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
229 230 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
230 231 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
231 232 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
232 233 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
233 234 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
234 235 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
235 236 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
236 237 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
237 238 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
238 239 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
239 240 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
240 241 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
241 242 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
242 243 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
243 244 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
244 245 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
245 246 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
246 247 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
247 248 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
248 249 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
249 250 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
250 251 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
251 252 2.748798 GCTAGGTGGTCTACGGATCTGA 60.749 54.545 9.00 0.00 0.00 3.27
252 253 2.526888 AGGTGGTCTACGGATCTGAA 57.473 50.000 9.00 0.00 0.00 3.02
253 254 3.033659 AGGTGGTCTACGGATCTGAAT 57.966 47.619 9.00 0.00 0.00 2.57
254 255 2.695666 AGGTGGTCTACGGATCTGAATG 59.304 50.000 9.00 0.00 0.00 2.67
255 256 2.431057 GGTGGTCTACGGATCTGAATGT 59.569 50.000 9.00 0.00 0.00 2.71
256 257 3.635373 GGTGGTCTACGGATCTGAATGTA 59.365 47.826 9.00 0.00 0.00 2.29
257 258 4.098960 GGTGGTCTACGGATCTGAATGTAA 59.901 45.833 9.00 0.00 0.00 2.41
258 259 5.221461 GGTGGTCTACGGATCTGAATGTAAT 60.221 44.000 9.00 0.00 0.00 1.89
259 260 6.281405 GTGGTCTACGGATCTGAATGTAATT 58.719 40.000 9.00 0.00 40.93 1.40
260 261 6.761714 GTGGTCTACGGATCTGAATGTAATTT 59.238 38.462 9.00 0.00 36.07 1.82
261 262 7.280205 GTGGTCTACGGATCTGAATGTAATTTT 59.720 37.037 9.00 0.00 36.07 1.82
262 263 7.827236 TGGTCTACGGATCTGAATGTAATTTTT 59.173 33.333 9.00 0.00 36.07 1.94
263 264 9.321562 GGTCTACGGATCTGAATGTAATTTTTA 57.678 33.333 9.00 0.00 36.07 1.52
275 276 9.921637 TGAATGTAATTTTTATTTCTGGTGTCC 57.078 29.630 0.00 0.00 36.07 4.02
276 277 8.980143 AATGTAATTTTTATTTCTGGTGTCCG 57.020 30.769 0.00 0.00 26.74 4.79
277 278 7.513371 TGTAATTTTTATTTCTGGTGTCCGT 57.487 32.000 0.00 0.00 0.00 4.69
278 279 7.942990 TGTAATTTTTATTTCTGGTGTCCGTT 58.057 30.769 0.00 0.00 0.00 4.44
279 280 7.863375 TGTAATTTTTATTTCTGGTGTCCGTTG 59.137 33.333 0.00 0.00 0.00 4.10
280 281 5.838531 TTTTTATTTCTGGTGTCCGTTGT 57.161 34.783 0.00 0.00 0.00 3.32
281 282 6.939132 TTTTTATTTCTGGTGTCCGTTGTA 57.061 33.333 0.00 0.00 0.00 2.41
282 283 5.927954 TTTATTTCTGGTGTCCGTTGTAC 57.072 39.130 0.00 0.00 0.00 2.90
283 284 2.983907 TTTCTGGTGTCCGTTGTACA 57.016 45.000 0.00 0.00 0.00 2.90
284 285 2.519377 TTCTGGTGTCCGTTGTACAG 57.481 50.000 0.00 0.00 0.00 2.74
285 286 0.032952 TCTGGTGTCCGTTGTACAGC 59.967 55.000 0.00 0.00 43.82 4.40
286 287 0.949105 CTGGTGTCCGTTGTACAGCC 60.949 60.000 3.94 0.00 43.10 4.85
287 288 1.070105 GGTGTCCGTTGTACAGCCA 59.930 57.895 3.94 0.00 38.98 4.75
288 289 0.321298 GGTGTCCGTTGTACAGCCAT 60.321 55.000 3.94 0.00 38.98 4.40
289 290 0.796312 GTGTCCGTTGTACAGCCATG 59.204 55.000 3.94 0.00 0.00 3.66
290 291 0.682292 TGTCCGTTGTACAGCCATGA 59.318 50.000 3.94 0.00 0.00 3.07
291 292 1.277842 TGTCCGTTGTACAGCCATGAT 59.722 47.619 3.94 0.00 0.00 2.45
292 293 2.290008 TGTCCGTTGTACAGCCATGATT 60.290 45.455 3.94 0.00 0.00 2.57
293 294 2.095853 GTCCGTTGTACAGCCATGATTG 59.904 50.000 3.94 0.00 0.00 2.67
294 295 2.027653 TCCGTTGTACAGCCATGATTGA 60.028 45.455 3.94 0.00 0.00 2.57
295 296 2.746904 CCGTTGTACAGCCATGATTGAA 59.253 45.455 3.94 0.00 0.00 2.69
296 297 3.181507 CCGTTGTACAGCCATGATTGAAG 60.182 47.826 3.94 0.00 0.00 3.02
297 298 3.684305 CGTTGTACAGCCATGATTGAAGA 59.316 43.478 3.94 0.00 0.00 2.87
298 299 4.333649 CGTTGTACAGCCATGATTGAAGAT 59.666 41.667 3.94 0.00 0.00 2.40
299 300 5.575957 GTTGTACAGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
300 301 5.101648 TGTACAGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
301 302 5.499313 TGTACAGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
302 303 6.124340 TGTACAGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
303 304 7.281841 TGTACAGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
304 305 7.774625 TGTACAGCCATGATTGAAGATGAATAA 59.225 33.333 0.00 0.00 0.00 1.40
305 306 7.649533 ACAGCCATGATTGAAGATGAATAAA 57.350 32.000 0.00 0.00 0.00 1.40
306 307 8.246430 ACAGCCATGATTGAAGATGAATAAAT 57.754 30.769 0.00 0.00 0.00 1.40
307 308 8.701895 ACAGCCATGATTGAAGATGAATAAATT 58.298 29.630 0.00 0.00 0.00 1.82
308 309 9.193133 CAGCCATGATTGAAGATGAATAAATTC 57.807 33.333 0.00 0.00 37.31 2.17
309 310 8.080417 AGCCATGATTGAAGATGAATAAATTCG 58.920 33.333 0.00 0.00 39.62 3.34
310 311 8.077991 GCCATGATTGAAGATGAATAAATTCGA 58.922 33.333 0.00 0.00 39.62 3.71
311 312 9.955208 CCATGATTGAAGATGAATAAATTCGAA 57.045 29.630 0.00 0.00 39.62 3.71
347 348 2.031314 TTAGTTGAGCGGCGGCAA 59.969 55.556 19.21 3.17 43.41 4.52
384 385 0.034616 GGCTTCGATGGCTATGAGCT 59.965 55.000 16.43 0.00 41.99 4.09
405 406 4.445453 CTCGATCACTTGGATGATGGAAA 58.555 43.478 0.00 0.00 41.50 3.13
425 426 4.467198 AAACACTACGGTGGATTAGAGG 57.533 45.455 0.00 0.00 46.85 3.69
459 460 3.248602 CACAAGAAGAGGGAGTTTGTTCG 59.751 47.826 0.00 0.00 30.15 3.95
485 486 1.829533 GGCCCATGCATCCGTCAAT 60.830 57.895 0.00 0.00 40.13 2.57
493 494 1.199789 TGCATCCGTCAATGTCAAAGC 59.800 47.619 0.00 0.00 0.00 3.51
494 495 1.468054 GCATCCGTCAATGTCAAAGCC 60.468 52.381 0.00 0.00 0.00 4.35
518 552 1.186267 AGTCAACCTCGTCTCCCCAC 61.186 60.000 0.00 0.00 0.00 4.61
519 553 2.261671 CAACCTCGTCTCCCCACG 59.738 66.667 0.00 0.00 41.36 4.94
522 556 3.450115 CCTCGTCTCCCCACGGAC 61.450 72.222 0.00 0.00 40.35 4.79
552 879 1.475280 CGGGAACAATCTACGGACAGA 59.525 52.381 0.00 0.00 0.00 3.41
564 891 3.664495 GACAGACGTGTCCTCCGA 58.336 61.111 0.00 0.00 46.58 4.55
565 892 1.209640 GACAGACGTGTCCTCCGAC 59.790 63.158 0.00 0.00 46.58 4.79
566 893 1.228184 ACAGACGTGTCCTCCGACT 60.228 57.895 0.00 0.00 39.94 4.18
567 894 1.235948 ACAGACGTGTCCTCCGACTC 61.236 60.000 0.00 0.00 39.94 3.36
568 895 0.956410 CAGACGTGTCCTCCGACTCT 60.956 60.000 0.00 0.00 39.94 3.24
569 896 0.674269 AGACGTGTCCTCCGACTCTC 60.674 60.000 0.00 0.00 39.94 3.20
570 897 1.646624 GACGTGTCCTCCGACTCTCC 61.647 65.000 0.00 0.00 39.94 3.71
571 898 2.751913 CGTGTCCTCCGACTCTCCG 61.752 68.421 0.00 0.00 39.94 4.63
572 899 1.376942 GTGTCCTCCGACTCTCCGA 60.377 63.158 0.00 0.00 39.94 4.55
573 900 1.078356 TGTCCTCCGACTCTCCGAG 60.078 63.158 0.00 0.00 39.94 4.63
574 901 1.820481 GTCCTCCGACTCTCCGAGG 60.820 68.421 0.00 0.00 35.99 4.63
575 902 3.213402 CCTCCGACTCTCCGAGGC 61.213 72.222 0.00 0.00 33.67 4.70
576 903 2.124487 CTCCGACTCTCCGAGGCT 60.124 66.667 0.00 0.00 35.13 4.58
577 904 2.124653 TCCGACTCTCCGAGGCTC 60.125 66.667 3.87 3.87 35.13 4.70
578 905 3.213402 CCGACTCTCCGAGGCTCC 61.213 72.222 9.32 0.00 35.13 4.70
617 944 1.143684 ACTGTGATTTCAGCTGTGGGT 59.856 47.619 14.67 0.00 38.84 4.51
618 945 2.233271 CTGTGATTTCAGCTGTGGGTT 58.767 47.619 14.67 0.00 0.00 4.11
648 975 2.089201 CAATCTGAGCTTGCCACATCA 58.911 47.619 0.00 0.00 0.00 3.07
650 977 0.978907 TCTGAGCTTGCCACATCAGA 59.021 50.000 7.80 7.80 44.38 3.27
680 1007 5.588648 GGATTTATTCCGTGAGATTTGTCCA 59.411 40.000 0.00 0.00 33.93 4.02
681 1008 5.873179 TTTATTCCGTGAGATTTGTCCAC 57.127 39.130 0.00 0.00 0.00 4.02
683 1010 2.920724 TCCGTGAGATTTGTCCACAA 57.079 45.000 0.00 0.00 0.00 3.33
684 1011 2.766313 TCCGTGAGATTTGTCCACAAG 58.234 47.619 0.00 0.00 37.15 3.16
685 1012 1.806542 CCGTGAGATTTGTCCACAAGG 59.193 52.381 0.00 0.00 37.15 3.61
686 1013 2.549992 CCGTGAGATTTGTCCACAAGGA 60.550 50.000 0.00 0.00 43.21 3.36
730 1064 3.937079 CGGGGTATTTCTACAACTCCAAC 59.063 47.826 0.00 0.00 0.00 3.77
750 1084 4.070581 ACAACATTCAGCTCGAAATTCG 57.929 40.909 9.38 9.38 42.10 3.34
771 1105 6.761099 TCGATCTATAGCAAGATAGTTCCC 57.239 41.667 0.00 0.00 36.33 3.97
772 1106 6.486056 TCGATCTATAGCAAGATAGTTCCCT 58.514 40.000 0.00 0.00 36.33 4.20
829 1176 9.472361 AAAAGACAACATGATTCTTGAGATTTG 57.528 29.630 0.00 3.62 29.89 2.32
830 1177 7.756395 AGACAACATGATTCTTGAGATTTGT 57.244 32.000 0.00 6.34 0.00 2.83
831 1178 7.591165 AGACAACATGATTCTTGAGATTTGTG 58.409 34.615 0.00 0.00 0.00 3.33
850 1197 0.812549 GCATGTGACATGGATGTGCA 59.187 50.000 25.22 0.00 41.95 4.57
851 1198 1.407618 GCATGTGACATGGATGTGCAT 59.592 47.619 25.22 0.00 41.95 3.96
864 1211 2.687700 TGTGCATTGCCACTTGTTTT 57.312 40.000 6.12 0.00 36.68 2.43
870 1217 3.870419 GCATTGCCACTTGTTTTGAGAAA 59.130 39.130 0.00 0.00 0.00 2.52
905 1255 1.001924 CGATCTCACGGATCTCACCTG 60.002 57.143 0.00 0.00 46.33 4.00
919 1269 1.822990 TCACCTGACAACGGATCCTAC 59.177 52.381 10.75 0.00 0.00 3.18
933 1283 7.268212 ACGGATCCTACTATTATAGTCTCCA 57.732 40.000 10.75 0.00 40.14 3.86
946 1296 3.315949 CTCCAACGTTCCCGGGGA 61.316 66.667 23.50 12.99 38.72 4.81
975 1325 1.468520 TCAAAACTAGCGCTGCCATTC 59.531 47.619 22.90 0.00 0.00 2.67
980 1330 2.760374 ACTAGCGCTGCCATTCTTATC 58.240 47.619 22.90 0.00 0.00 1.75
981 1331 2.366916 ACTAGCGCTGCCATTCTTATCT 59.633 45.455 22.90 0.00 0.00 1.98
982 1332 2.338577 AGCGCTGCCATTCTTATCTT 57.661 45.000 10.39 0.00 0.00 2.40
983 1333 3.475566 AGCGCTGCCATTCTTATCTTA 57.524 42.857 10.39 0.00 0.00 2.10
984 1334 4.013267 AGCGCTGCCATTCTTATCTTAT 57.987 40.909 10.39 0.00 0.00 1.73
985 1335 5.152623 AGCGCTGCCATTCTTATCTTATA 57.847 39.130 10.39 0.00 0.00 0.98
986 1336 5.738909 AGCGCTGCCATTCTTATCTTATAT 58.261 37.500 10.39 0.00 0.00 0.86
987 1337 6.878317 AGCGCTGCCATTCTTATCTTATATA 58.122 36.000 10.39 0.00 0.00 0.86
988 1338 7.331026 AGCGCTGCCATTCTTATCTTATATAA 58.669 34.615 10.39 0.00 0.00 0.98
989 1339 7.824289 AGCGCTGCCATTCTTATCTTATATAAA 59.176 33.333 10.39 0.00 0.00 1.40
990 1340 8.119226 GCGCTGCCATTCTTATCTTATATAAAG 58.881 37.037 0.00 0.00 0.00 1.85
991 1341 9.371136 CGCTGCCATTCTTATCTTATATAAAGA 57.629 33.333 0.00 0.00 0.00 2.52
1003 1353 6.525629 TCTTATATAAAGAAGCAGGTGGAGC 58.474 40.000 0.00 0.00 0.00 4.70
1004 1354 6.327626 TCTTATATAAAGAAGCAGGTGGAGCT 59.672 38.462 0.00 0.00 45.97 4.09
1020 1370 3.244875 TGGAGCTTACAAAGGATGAAGCA 60.245 43.478 8.07 0.00 41.06 3.91
1094 1447 1.630148 CCCGTCGATGTGAAGAAGAC 58.370 55.000 3.52 0.00 0.00 3.01
1116 1469 0.329261 CATGGGAGCAGGAGGTTCAA 59.671 55.000 0.00 0.00 0.00 2.69
1176 1529 1.553690 ATGTGACCGAGGGGGAGTTG 61.554 60.000 0.00 0.00 39.97 3.16
1386 1749 3.844640 TCGATCTAGATCATGGGGTTCA 58.155 45.455 27.97 2.01 37.69 3.18
1393 1756 4.387026 AGATCATGGGGTTCAAAGTTGA 57.613 40.909 0.00 0.00 34.92 3.18
1402 1765 3.636764 GGGTTCAAAGTTGATCCTGTTGT 59.363 43.478 16.86 0.00 43.43 3.32
1432 1796 8.462016 ACTATGGTTTGATGCTCTGTTTATTTC 58.538 33.333 0.00 0.00 0.00 2.17
1445 1809 8.439286 GCTCTGTTTATTTCAGTAGAAAGAGTG 58.561 37.037 0.00 0.00 46.13 3.51
1485 1853 5.762045 TGCATTAGACAAAAGCAAGTCTTC 58.238 37.500 0.02 0.00 42.12 2.87
1504 1874 1.955778 TCTGTGCCACCAAACTGAATG 59.044 47.619 0.00 0.00 0.00 2.67
1514 1884 2.034558 CCAAACTGAATGTGTGTGGGTC 59.965 50.000 0.00 0.00 32.01 4.46
1549 1919 1.207791 ATCTCAGTGGCCCACTTAGG 58.792 55.000 21.87 9.06 42.59 2.69
1651 2021 0.763035 ATGAGTGGGGTTATACCGGC 59.237 55.000 0.00 0.00 39.83 6.13
1768 2138 4.037927 CCCCTCAGATACCAGGTAAGAAA 58.962 47.826 2.53 0.00 0.00 2.52
1779 2149 5.264395 ACCAGGTAAGAAATTGCTGCTATT 58.736 37.500 3.47 3.47 0.00 1.73
1780 2150 5.716703 ACCAGGTAAGAAATTGCTGCTATTT 59.283 36.000 19.24 19.24 0.00 1.40
1781 2151 6.889722 ACCAGGTAAGAAATTGCTGCTATTTA 59.110 34.615 19.19 4.61 0.00 1.40
1782 2152 7.561356 ACCAGGTAAGAAATTGCTGCTATTTAT 59.439 33.333 19.19 14.70 0.00 1.40
1783 2153 8.416329 CCAGGTAAGAAATTGCTGCTATTTATT 58.584 33.333 24.49 24.49 32.84 1.40
1784 2154 9.241317 CAGGTAAGAAATTGCTGCTATTTATTG 57.759 33.333 27.29 15.06 31.24 1.90
1785 2155 8.971073 AGGTAAGAAATTGCTGCTATTTATTGT 58.029 29.630 27.29 15.57 31.24 2.71
1786 2156 9.586435 GGTAAGAAATTGCTGCTATTTATTGTT 57.414 29.630 27.29 17.85 31.24 2.83
1789 2159 8.470040 AGAAATTGCTGCTATTTATTGTTGTG 57.530 30.769 19.19 0.00 0.00 3.33
1790 2160 8.306038 AGAAATTGCTGCTATTTATTGTTGTGA 58.694 29.630 19.19 0.00 0.00 3.58
1791 2161 8.830201 AAATTGCTGCTATTTATTGTTGTGAA 57.170 26.923 18.06 0.00 0.00 3.18
1792 2162 9.439500 AAATTGCTGCTATTTATTGTTGTGAAT 57.561 25.926 18.06 0.00 0.00 2.57
1793 2163 9.439500 AATTGCTGCTATTTATTGTTGTGAATT 57.561 25.926 3.47 0.00 0.00 2.17
1794 2164 8.830201 TTGCTGCTATTTATTGTTGTGAATTT 57.170 26.923 0.00 0.00 0.00 1.82
1795 2165 8.830201 TGCTGCTATTTATTGTTGTGAATTTT 57.170 26.923 0.00 0.00 0.00 1.82
1796 2166 8.710551 TGCTGCTATTTATTGTTGTGAATTTTG 58.289 29.630 0.00 0.00 0.00 2.44
1797 2167 8.711457 GCTGCTATTTATTGTTGTGAATTTTGT 58.289 29.630 0.00 0.00 0.00 2.83
1818 2188 8.990163 TTTGTATAGAAAATGAGGATTACCCC 57.010 34.615 0.00 0.00 36.73 4.95
1819 2189 7.086685 TGTATAGAAAATGAGGATTACCCCC 57.913 40.000 0.00 0.00 36.73 5.40
1820 2190 3.577805 AGAAAATGAGGATTACCCCCG 57.422 47.619 0.00 0.00 36.73 5.73
1821 2191 3.120108 AGAAAATGAGGATTACCCCCGA 58.880 45.455 0.00 0.00 36.73 5.14
1822 2192 3.722101 AGAAAATGAGGATTACCCCCGAT 59.278 43.478 0.00 0.00 36.73 4.18
1823 2193 4.911522 AGAAAATGAGGATTACCCCCGATA 59.088 41.667 0.00 0.00 36.73 2.92
1824 2194 5.551977 AGAAAATGAGGATTACCCCCGATAT 59.448 40.000 0.00 0.00 36.73 1.63
1825 2195 5.860648 AAATGAGGATTACCCCCGATATT 57.139 39.130 0.00 0.00 36.73 1.28
1826 2196 5.860648 AATGAGGATTACCCCCGATATTT 57.139 39.130 0.00 0.00 36.73 1.40
1831 2201 6.273730 TGAGGATTACCCCCGATATTTATTGT 59.726 38.462 0.00 0.00 36.73 2.71
1871 2272 8.571461 TTCAGCTTCAGATCATTCAATAGTTT 57.429 30.769 0.00 0.00 0.00 2.66
1873 2274 7.825761 TCAGCTTCAGATCATTCAATAGTTTCA 59.174 33.333 0.00 0.00 0.00 2.69
1874 2275 8.622157 CAGCTTCAGATCATTCAATAGTTTCAT 58.378 33.333 0.00 0.00 0.00 2.57
1978 2381 6.838612 TCAATATATGGAACCAAAGGGAAAGG 59.161 38.462 0.00 0.00 38.05 3.11
1990 2393 1.923148 AGGGAAAGGGAATTGGTCGAT 59.077 47.619 0.00 0.00 0.00 3.59
2151 3793 7.478322 AGCTATGCTAACAATATATGCAATGC 58.522 34.615 0.00 0.00 36.99 3.56
2187 3834 0.322008 GGGACTCCTGAGTGGCAAAG 60.322 60.000 4.19 0.00 42.66 2.77
2266 3913 6.018343 GTGACATAAAGAATCTAAGCAGAGGC 60.018 42.308 0.00 0.00 41.61 4.70
2314 3961 5.009610 TGTTGAAGGAGCAAATTTGAGTACC 59.990 40.000 22.31 16.21 0.00 3.34
2365 4012 5.771575 GTGAAGTCTCATTTTGCGGAGCG 62.772 52.174 0.00 0.00 46.78 5.03
2435 4635 2.160417 GCTGAACTGTACATGACTTGCC 59.840 50.000 0.00 0.00 0.00 4.52
2436 4636 3.668447 CTGAACTGTACATGACTTGCCT 58.332 45.455 0.00 0.00 0.00 4.75
2437 4637 3.402110 TGAACTGTACATGACTTGCCTG 58.598 45.455 0.00 0.00 0.00 4.85
2438 4638 3.181455 TGAACTGTACATGACTTGCCTGT 60.181 43.478 0.00 0.00 0.00 4.00
2439 4639 3.045601 ACTGTACATGACTTGCCTGTC 57.954 47.619 0.00 0.00 37.47 3.51
2660 4905 1.203287 GGGAAGCAGCATTTCCTTGAC 59.797 52.381 12.09 0.00 42.97 3.18
2773 5018 8.630037 CCAGGGTTAATTTTATATTGTCACCTC 58.370 37.037 0.00 0.00 0.00 3.85
2794 5039 8.074972 CACCTCGTAATTAAGTACTCTACCATC 58.925 40.741 10.99 0.00 0.00 3.51
2795 5040 7.230309 ACCTCGTAATTAAGTACTCTACCATCC 59.770 40.741 10.99 0.00 0.00 3.51
2796 5041 7.309073 CCTCGTAATTAAGTACTCTACCATCCC 60.309 44.444 10.99 0.00 0.00 3.85
2797 5042 6.491403 TCGTAATTAAGTACTCTACCATCCCC 59.509 42.308 10.99 0.00 0.00 4.81
2798 5043 5.803237 AATTAAGTACTCTACCATCCCCG 57.197 43.478 0.00 0.00 0.00 5.73
2799 5044 1.411041 AAGTACTCTACCATCCCCGC 58.589 55.000 0.00 0.00 0.00 6.13
2800 5045 0.260816 AGTACTCTACCATCCCCGCA 59.739 55.000 0.00 0.00 0.00 5.69
2801 5046 1.117150 GTACTCTACCATCCCCGCAA 58.883 55.000 0.00 0.00 0.00 4.85
2802 5047 1.483415 GTACTCTACCATCCCCGCAAA 59.517 52.381 0.00 0.00 0.00 3.68
2803 5048 0.988832 ACTCTACCATCCCCGCAAAA 59.011 50.000 0.00 0.00 0.00 2.44
2804 5049 1.353022 ACTCTACCATCCCCGCAAAAA 59.647 47.619 0.00 0.00 0.00 1.94
2881 5135 3.023832 ACTTTGGGTTATGTATGCAGGC 58.976 45.455 0.00 0.00 0.00 4.85
2980 5234 0.737715 GCCATCCCGACAGCGATATC 60.738 60.000 0.00 0.00 40.82 1.63
2992 5246 3.014623 CAGCGATATCCGACCAGGTATA 58.985 50.000 0.00 0.00 41.76 1.47
3026 5280 3.129287 CCAACACAATATCTTCTGCACCC 59.871 47.826 0.00 0.00 0.00 4.61
3105 5393 2.485124 GGTCTGATCTTGGATCTGGCTG 60.485 54.545 14.97 0.00 0.00 4.85
3112 5400 2.015587 CTTGGATCTGGCTGAAGCTTC 58.984 52.381 19.89 19.89 41.70 3.86
3131 5419 4.261572 GCTTCCTGTGCTACATTTGTTTGA 60.262 41.667 0.00 0.00 0.00 2.69
3132 5420 4.829064 TCCTGTGCTACATTTGTTTGAC 57.171 40.909 0.00 0.00 0.00 3.18
3135 5423 4.083324 CCTGTGCTACATTTGTTTGACGAT 60.083 41.667 0.00 0.00 0.00 3.73
3172 5462 5.823570 GTGTCCACAGATAGCTAGTAGAGAA 59.176 44.000 0.00 0.00 0.00 2.87
3265 5568 0.107831 GTGTGTGCCCAGTTACTCCA 59.892 55.000 0.00 0.00 0.00 3.86
3269 5572 1.278985 TGTGCCCAGTTACTCCATGAG 59.721 52.381 0.00 0.00 35.52 2.90
3270 5573 0.911769 TGCCCAGTTACTCCATGAGG 59.088 55.000 0.00 0.00 33.35 3.86
3298 6011 6.090088 GTGAGTCTAGTCAGTAATGTGCAAAG 59.910 42.308 0.00 0.00 0.00 2.77
3331 6044 7.942894 TCCTGATAGTATCTCCTTCATTCGTAA 59.057 37.037 11.40 0.00 0.00 3.18
3334 6047 4.861210 AGTATCTCCTTCATTCGTAAGCG 58.139 43.478 0.00 0.00 39.92 4.68
3347 6060 6.793203 TCATTCGTAAGCGTTTTCAATGTTAC 59.207 34.615 0.00 0.00 39.49 2.50
3353 6066 5.260027 AGCGTTTTCAATGTTACGAGTAC 57.740 39.130 0.00 0.00 36.16 2.73
3398 6111 7.953173 GTGCATGACATTTCAATTGTTAACATG 59.047 33.333 9.56 5.99 34.61 3.21
3440 6153 1.543944 CCTGGGGCATGGACCAAAAC 61.544 60.000 0.00 0.00 36.09 2.43
3541 6254 2.496871 GGACACCATGGCATCAATCAAA 59.503 45.455 13.04 0.00 0.00 2.69
3558 6271 8.375717 TCAATCAAACGTCTAAAAATAATGCG 57.624 30.769 0.00 0.00 0.00 4.73
3641 6354 6.064060 CCATCATTTATGTATGTGTGACCCT 58.936 40.000 0.00 0.00 33.34 4.34
3668 6381 2.277084 GGACCAGTAGTTGTAATGCCG 58.723 52.381 0.00 0.00 0.00 5.69
3690 6403 6.460399 GCCGTATTGTCTATTGAGTTCTCTCT 60.460 42.308 1.53 0.00 40.98 3.10
3691 6404 7.484975 CCGTATTGTCTATTGAGTTCTCTCTT 58.515 38.462 1.53 0.00 40.98 2.85
3692 6405 7.433719 CCGTATTGTCTATTGAGTTCTCTCTTG 59.566 40.741 1.53 0.00 40.98 3.02
3693 6406 7.971168 CGTATTGTCTATTGAGTTCTCTCTTGT 59.029 37.037 1.53 0.00 40.98 3.16
3694 6407 9.296400 GTATTGTCTATTGAGTTCTCTCTTGTC 57.704 37.037 1.53 0.00 40.98 3.18
3695 6408 7.531857 TTGTCTATTGAGTTCTCTCTTGTCT 57.468 36.000 1.53 0.00 40.98 3.41
3696 6409 8.637196 TTGTCTATTGAGTTCTCTCTTGTCTA 57.363 34.615 1.53 0.00 40.98 2.59
3697 6410 8.815565 TGTCTATTGAGTTCTCTCTTGTCTAT 57.184 34.615 1.53 0.00 40.98 1.98
3698 6411 9.907229 TGTCTATTGAGTTCTCTCTTGTCTATA 57.093 33.333 1.53 0.00 40.98 1.31
3725 6438 4.930963 TGCAAAGTTTTGTGATGTAGGTG 58.069 39.130 6.48 0.00 40.24 4.00
3776 6489 9.512435 CTATTGAAATTATGCAACTCTCCAAAG 57.488 33.333 0.00 0.00 0.00 2.77
3804 6517 2.784682 GAGGTCCTCTAACCCTCTAGGA 59.215 54.545 12.02 0.00 41.31 2.94
3808 6521 4.345547 GGTCCTCTAACCCTCTAGGAAATG 59.654 50.000 0.00 0.00 39.77 2.32
3835 6548 6.579850 TCCGAACCCCTTTTTAGGTAATAT 57.420 37.500 0.00 0.00 34.45 1.28
3836 6549 7.688918 TCCGAACCCCTTTTTAGGTAATATA 57.311 36.000 0.00 0.00 34.45 0.86
3838 6551 7.348011 TCCGAACCCCTTTTTAGGTAATATAGT 59.652 37.037 0.00 0.00 34.45 2.12
3839 6552 7.443272 CCGAACCCCTTTTTAGGTAATATAGTG 59.557 40.741 0.00 0.00 34.45 2.74
3841 6554 7.157947 ACCCCTTTTTAGGTAATATAGTGGG 57.842 40.000 0.00 0.00 33.52 4.61
3842 6555 6.915985 ACCCCTTTTTAGGTAATATAGTGGGA 59.084 38.462 0.00 0.00 33.52 4.37
3858 6571 2.109126 GGAGTTGTGCTGCCGATCC 61.109 63.158 0.00 0.00 0.00 3.36
3869 6582 1.819632 GCCGATCCGCACCTTTGAT 60.820 57.895 0.82 0.00 0.00 2.57
3888 6601 7.540055 CCTTTGATATGTTTCAACAGAGCTTTC 59.460 37.037 4.39 0.00 43.04 2.62
3897 6610 6.698008 TTCAACAGAGCTTTCAGATTGAAA 57.302 33.333 4.39 4.39 43.37 2.69
3952 6683 6.891361 TCATCTTTCAATGGTTGGTGATACAT 59.109 34.615 0.00 0.00 0.00 2.29
3966 6697 3.191581 GTGATACATGATCGGATCGGTCT 59.808 47.826 15.57 8.64 37.91 3.85
3979 6716 1.550327 TCGGTCTCACAGATTGCTCT 58.450 50.000 0.00 0.00 0.00 4.09
4062 6799 8.743099 GTGAGGTTTTCTGTTAAATTTTCTTCG 58.257 33.333 0.00 0.00 0.00 3.79
4217 6954 4.152223 TGCCGATCGACATTTGCAATATAG 59.848 41.667 18.66 0.00 0.00 1.31
4227 6964 9.715123 CGACATTTGCAATATAGAACATACAAA 57.285 29.630 0.00 0.00 0.00 2.83
4320 7057 4.020839 CCCTTCCAAAGATTTGCAGACATT 60.021 41.667 0.00 0.00 36.86 2.71
4338 7075 3.118956 ACATTGGTTTCTTGCCACGAAAA 60.119 39.130 0.00 0.00 35.46 2.29
4526 7263 4.385146 GTCAGTAAAACTTCAGGCGAGTAC 59.615 45.833 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.379977 ACCGAGGAGATCCGAGCAA 60.380 57.895 0.00 0.00 42.08 3.91
2 3 2.121538 CACCGAGGAGATCCGAGCA 61.122 63.158 0.00 0.00 42.08 4.26
6 7 1.064296 CGAACACCGAGGAGATCCG 59.936 63.158 0.00 0.00 41.76 4.18
8 9 1.096416 AGACGAACACCGAGGAGATC 58.904 55.000 0.00 0.00 41.76 2.75
9 10 2.015587 GTAGACGAACACCGAGGAGAT 58.984 52.381 0.00 0.00 41.76 2.75
10 11 1.002888 AGTAGACGAACACCGAGGAGA 59.997 52.381 0.00 0.00 41.76 3.71
11 12 1.451067 AGTAGACGAACACCGAGGAG 58.549 55.000 0.00 0.00 41.76 3.69
12 13 1.901591 AAGTAGACGAACACCGAGGA 58.098 50.000 0.00 0.00 41.76 3.71
14 15 2.240040 CGAAAGTAGACGAACACCGAG 58.760 52.381 0.00 0.00 41.76 4.63
15 16 1.603802 ACGAAAGTAGACGAACACCGA 59.396 47.619 0.00 0.00 46.88 4.69
27 28 8.839403 ATTCAACCCGAAGACACACGAAAGTA 62.839 42.308 0.00 0.00 38.91 2.24
29 30 1.260561 CAACCCGAAGACACACGAAAG 59.739 52.381 0.00 0.00 0.00 2.62
30 31 1.134759 TCAACCCGAAGACACACGAAA 60.135 47.619 0.00 0.00 0.00 3.46
31 32 0.460722 TCAACCCGAAGACACACGAA 59.539 50.000 0.00 0.00 0.00 3.85
32 33 0.460722 TTCAACCCGAAGACACACGA 59.539 50.000 0.00 0.00 0.00 4.35
33 34 1.459592 GATTCAACCCGAAGACACACG 59.540 52.381 0.00 0.00 36.95 4.49
34 35 1.804748 GGATTCAACCCGAAGACACAC 59.195 52.381 0.00 0.00 36.95 3.82
35 36 1.697432 AGGATTCAACCCGAAGACACA 59.303 47.619 0.00 0.00 36.95 3.72
36 37 2.474410 AGGATTCAACCCGAAGACAC 57.526 50.000 0.00 0.00 36.95 3.67
37 38 3.053831 GAAGGATTCAACCCGAAGACA 57.946 47.619 0.00 0.00 46.62 3.41
45 46 5.800882 TAACGTAGGTTGGAAGGATTCAACC 60.801 44.000 15.10 15.10 46.83 3.77
46 47 5.240121 TAACGTAGGTTGGAAGGATTCAAC 58.760 41.667 10.99 0.00 41.43 3.18
47 48 5.486735 TAACGTAGGTTGGAAGGATTCAA 57.513 39.130 10.99 0.00 41.43 2.69
48 49 5.687166 ATAACGTAGGTTGGAAGGATTCA 57.313 39.130 10.99 0.00 41.43 2.57
49 50 6.346896 AGAATAACGTAGGTTGGAAGGATTC 58.653 40.000 10.99 10.16 40.01 2.52
50 51 6.309389 AGAATAACGTAGGTTGGAAGGATT 57.691 37.500 10.99 1.75 36.90 3.01
51 52 5.952347 AGAATAACGTAGGTTGGAAGGAT 57.048 39.130 10.99 0.00 36.90 3.24
52 53 5.622914 CGAAGAATAACGTAGGTTGGAAGGA 60.623 44.000 10.99 0.00 36.90 3.36
53 54 4.565564 CGAAGAATAACGTAGGTTGGAAGG 59.434 45.833 10.99 0.00 36.90 3.46
54 55 5.166398 ACGAAGAATAACGTAGGTTGGAAG 58.834 41.667 10.99 0.00 40.92 3.46
55 56 5.047802 AGACGAAGAATAACGTAGGTTGGAA 60.048 40.000 10.99 0.00 42.74 3.53
56 57 4.460382 AGACGAAGAATAACGTAGGTTGGA 59.540 41.667 10.99 0.00 42.74 3.53
57 58 4.561606 CAGACGAAGAATAACGTAGGTTGG 59.438 45.833 10.99 0.00 42.74 3.77
58 59 5.060569 CACAGACGAAGAATAACGTAGGTTG 59.939 44.000 10.99 0.00 42.74 3.77
59 60 5.159209 CACAGACGAAGAATAACGTAGGTT 58.841 41.667 6.03 6.03 42.74 3.50
60 61 4.380233 CCACAGACGAAGAATAACGTAGGT 60.380 45.833 0.00 0.00 42.74 3.08
61 62 4.103357 CCACAGACGAAGAATAACGTAGG 58.897 47.826 0.00 0.00 42.74 3.18
62 63 3.546670 GCCACAGACGAAGAATAACGTAG 59.453 47.826 0.00 0.00 42.74 3.51
63 64 3.504863 GCCACAGACGAAGAATAACGTA 58.495 45.455 0.00 0.00 42.74 3.57
64 65 2.334838 GCCACAGACGAAGAATAACGT 58.665 47.619 0.00 0.00 45.32 3.99
65 66 1.320555 CGCCACAGACGAAGAATAACG 59.679 52.381 0.00 0.00 0.00 3.18
66 67 1.659098 CCGCCACAGACGAAGAATAAC 59.341 52.381 0.00 0.00 0.00 1.89
67 68 1.274167 ACCGCCACAGACGAAGAATAA 59.726 47.619 0.00 0.00 0.00 1.40
68 69 0.892755 ACCGCCACAGACGAAGAATA 59.107 50.000 0.00 0.00 0.00 1.75
69 70 0.034896 AACCGCCACAGACGAAGAAT 59.965 50.000 0.00 0.00 0.00 2.40
70 71 0.878523 CAACCGCCACAGACGAAGAA 60.879 55.000 0.00 0.00 0.00 2.52
71 72 1.300620 CAACCGCCACAGACGAAGA 60.301 57.895 0.00 0.00 0.00 2.87
72 73 2.954753 GCAACCGCCACAGACGAAG 61.955 63.158 0.00 0.00 0.00 3.79
73 74 2.970324 GCAACCGCCACAGACGAA 60.970 61.111 0.00 0.00 0.00 3.85
74 75 3.923864 AGCAACCGCCACAGACGA 61.924 61.111 0.00 0.00 39.83 4.20
75 76 3.716006 CAGCAACCGCCACAGACG 61.716 66.667 0.00 0.00 39.83 4.18
76 77 2.117941 GAACAGCAACCGCCACAGAC 62.118 60.000 0.00 0.00 39.83 3.51
77 78 1.891919 GAACAGCAACCGCCACAGA 60.892 57.895 0.00 0.00 39.83 3.41
78 79 1.893808 AGAACAGCAACCGCCACAG 60.894 57.895 0.00 0.00 39.83 3.66
79 80 2.186160 CAGAACAGCAACCGCCACA 61.186 57.895 0.00 0.00 39.83 4.17
80 81 2.639286 CAGAACAGCAACCGCCAC 59.361 61.111 0.00 0.00 39.83 5.01
81 82 2.594303 CCAGAACAGCAACCGCCA 60.594 61.111 0.00 0.00 39.83 5.69
82 83 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
83 84 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
84 85 2.260869 CCCACCAGAACAGCAACCG 61.261 63.158 0.00 0.00 0.00 4.44
85 86 2.564721 GCCCACCAGAACAGCAACC 61.565 63.158 0.00 0.00 0.00 3.77
86 87 1.529244 AGCCCACCAGAACAGCAAC 60.529 57.895 0.00 0.00 0.00 4.17
87 88 1.529010 CAGCCCACCAGAACAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
88 89 2.113774 CAGCCCACCAGAACAGCA 59.886 61.111 0.00 0.00 0.00 4.41
89 90 2.674380 CCAGCCCACCAGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
90 91 1.302832 GACCAGCCCACCAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
91 92 2.829384 GGACCAGCCCACCAGAACA 61.829 63.158 0.00 0.00 0.00 3.18
92 93 1.198759 TAGGACCAGCCCACCAGAAC 61.199 60.000 0.00 0.00 37.37 3.01
93 94 0.253160 ATAGGACCAGCCCACCAGAA 60.253 55.000 0.00 0.00 37.37 3.02
94 95 0.982852 CATAGGACCAGCCCACCAGA 60.983 60.000 0.00 0.00 37.37 3.86
95 96 1.528824 CATAGGACCAGCCCACCAG 59.471 63.158 0.00 0.00 37.37 4.00
96 97 2.000701 CCATAGGACCAGCCCACCA 61.001 63.158 0.00 0.00 37.37 4.17
97 98 2.757124 CCCATAGGACCAGCCCACC 61.757 68.421 0.00 0.00 37.37 4.61
98 99 2.757124 CCCCATAGGACCAGCCCAC 61.757 68.421 0.00 0.00 38.24 4.61
99 100 2.368192 CCCCATAGGACCAGCCCA 60.368 66.667 0.00 0.00 38.24 5.36
100 101 3.890926 GCCCCATAGGACCAGCCC 61.891 72.222 0.00 0.00 38.24 5.19
101 102 3.890926 GGCCCCATAGGACCAGCC 61.891 72.222 0.00 0.00 37.96 4.85
107 108 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
108 109 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
109 110 0.034059 CTCGTGCTAAGGCCCCATAG 59.966 60.000 0.00 0.67 37.74 2.23
110 111 0.397957 TCTCGTGCTAAGGCCCCATA 60.398 55.000 0.00 0.00 37.74 2.74
111 112 1.271840 TTCTCGTGCTAAGGCCCCAT 61.272 55.000 0.00 0.00 37.74 4.00
112 113 1.916273 TTCTCGTGCTAAGGCCCCA 60.916 57.895 0.00 0.00 37.74 4.96
113 114 1.449778 GTTCTCGTGCTAAGGCCCC 60.450 63.158 0.00 0.00 37.74 5.80
114 115 0.036294 AAGTTCTCGTGCTAAGGCCC 60.036 55.000 0.00 0.00 37.74 5.80
115 116 1.360820 GAAGTTCTCGTGCTAAGGCC 58.639 55.000 0.00 0.00 37.74 5.19
116 117 1.360820 GGAAGTTCTCGTGCTAAGGC 58.639 55.000 2.25 0.00 39.26 4.35
117 118 1.736032 CGGGAAGTTCTCGTGCTAAGG 60.736 57.143 17.19 0.00 35.23 2.69
118 119 1.201647 TCGGGAAGTTCTCGTGCTAAG 59.798 52.381 23.79 0.00 41.96 2.18
119 120 1.068055 GTCGGGAAGTTCTCGTGCTAA 60.068 52.381 23.79 2.03 41.96 3.09
120 121 0.524862 GTCGGGAAGTTCTCGTGCTA 59.475 55.000 23.79 2.43 41.96 3.49
121 122 1.179814 AGTCGGGAAGTTCTCGTGCT 61.180 55.000 23.79 19.08 41.96 4.40
122 123 1.009389 CAGTCGGGAAGTTCTCGTGC 61.009 60.000 23.79 17.32 41.96 5.34
123 124 0.314302 ACAGTCGGGAAGTTCTCGTG 59.686 55.000 23.79 17.87 41.96 4.35
124 125 0.597072 GACAGTCGGGAAGTTCTCGT 59.403 55.000 23.79 5.32 41.96 4.18
125 126 0.882474 AGACAGTCGGGAAGTTCTCG 59.118 55.000 19.29 19.29 42.83 4.04
126 127 3.083293 AGTAGACAGTCGGGAAGTTCTC 58.917 50.000 2.25 0.00 0.00 2.87
127 128 3.157750 AGTAGACAGTCGGGAAGTTCT 57.842 47.619 2.25 0.00 0.00 3.01
128 129 3.755378 TGTAGTAGACAGTCGGGAAGTTC 59.245 47.826 0.00 0.00 32.86 3.01
129 130 3.759581 TGTAGTAGACAGTCGGGAAGTT 58.240 45.455 0.00 0.00 32.86 2.66
130 131 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
131 132 4.985538 ATTGTAGTAGACAGTCGGGAAG 57.014 45.455 0.00 0.00 39.88 3.46
132 133 5.948162 ACTTATTGTAGTAGACAGTCGGGAA 59.052 40.000 0.00 0.00 39.88 3.97
133 134 5.503927 ACTTATTGTAGTAGACAGTCGGGA 58.496 41.667 0.00 0.00 39.88 5.14
134 135 5.831702 ACTTATTGTAGTAGACAGTCGGG 57.168 43.478 0.00 0.00 39.88 5.14
149 150 1.737793 GGAGTCGGGCACAACTTATTG 59.262 52.381 0.00 0.00 41.98 1.90
150 151 1.674817 CGGAGTCGGGCACAACTTATT 60.675 52.381 0.00 0.00 0.00 1.40
151 152 0.108329 CGGAGTCGGGCACAACTTAT 60.108 55.000 0.00 0.00 0.00 1.73
152 153 1.180456 TCGGAGTCGGGCACAACTTA 61.180 55.000 0.00 0.00 36.95 2.24
153 154 1.827399 ATCGGAGTCGGGCACAACTT 61.827 55.000 0.00 0.00 36.95 2.66
154 155 2.283529 ATCGGAGTCGGGCACAACT 61.284 57.895 0.00 0.00 36.95 3.16
155 156 2.100631 CATCGGAGTCGGGCACAAC 61.101 63.158 0.00 0.00 36.95 3.32
156 157 1.613317 ATCATCGGAGTCGGGCACAA 61.613 55.000 0.00 0.00 36.95 3.33
157 158 2.058001 ATCATCGGAGTCGGGCACA 61.058 57.895 0.00 0.00 36.95 4.57
158 159 1.592669 CATCATCGGAGTCGGGCAC 60.593 63.158 0.00 0.00 36.95 5.01
159 160 2.796193 CCATCATCGGAGTCGGGCA 61.796 63.158 0.00 0.00 36.95 5.36
160 161 2.029666 CCATCATCGGAGTCGGGC 59.970 66.667 0.00 0.00 36.95 6.13
161 162 1.662608 CTCCATCATCGGAGTCGGG 59.337 63.158 0.00 0.00 46.48 5.14
167 168 0.104986 ATCACCCCTCCATCATCGGA 60.105 55.000 0.00 0.00 0.00 4.55
168 169 0.035881 CATCACCCCTCCATCATCGG 59.964 60.000 0.00 0.00 0.00 4.18
169 170 1.051008 TCATCACCCCTCCATCATCG 58.949 55.000 0.00 0.00 0.00 3.84
170 171 1.270518 CGTCATCACCCCTCCATCATC 60.271 57.143 0.00 0.00 0.00 2.92
171 172 0.761187 CGTCATCACCCCTCCATCAT 59.239 55.000 0.00 0.00 0.00 2.45
172 173 1.337384 CCGTCATCACCCCTCCATCA 61.337 60.000 0.00 0.00 0.00 3.07
173 174 1.447643 CCGTCATCACCCCTCCATC 59.552 63.158 0.00 0.00 0.00 3.51
174 175 2.746375 GCCGTCATCACCCCTCCAT 61.746 63.158 0.00 0.00 0.00 3.41
175 176 3.399181 GCCGTCATCACCCCTCCA 61.399 66.667 0.00 0.00 0.00 3.86
176 177 4.530857 CGCCGTCATCACCCCTCC 62.531 72.222 0.00 0.00 0.00 4.30
177 178 4.530857 CCGCCGTCATCACCCCTC 62.531 72.222 0.00 0.00 0.00 4.30
200 201 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
201 202 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
202 203 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
203 204 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
204 205 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
205 206 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
206 207 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
207 208 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
208 209 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
209 210 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
210 211 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
211 212 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
212 213 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
213 214 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
214 215 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
215 216 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
216 217 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
217 218 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
218 219 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
219 220 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
220 221 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
221 222 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
222 223 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
223 224 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
224 225 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
225 226 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
226 227 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
227 228 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
228 229 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
229 230 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
230 231 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
231 232 3.210232 TCAGATCCGTAGACCACCTAG 57.790 52.381 0.00 0.00 0.00 3.02
232 233 3.657398 TTCAGATCCGTAGACCACCTA 57.343 47.619 0.00 0.00 0.00 3.08
233 234 2.526888 TTCAGATCCGTAGACCACCT 57.473 50.000 0.00 0.00 0.00 4.00
234 235 2.431057 ACATTCAGATCCGTAGACCACC 59.569 50.000 0.00 0.00 0.00 4.61
235 236 3.802948 ACATTCAGATCCGTAGACCAC 57.197 47.619 0.00 0.00 0.00 4.16
236 237 6.479972 AATTACATTCAGATCCGTAGACCA 57.520 37.500 0.00 0.00 0.00 4.02
237 238 7.787725 AAAATTACATTCAGATCCGTAGACC 57.212 36.000 0.00 0.00 0.00 3.85
249 250 9.921637 GGACACCAGAAATAAAAATTACATTCA 57.078 29.630 0.00 0.00 0.00 2.57
250 251 9.072294 CGGACACCAGAAATAAAAATTACATTC 57.928 33.333 0.00 0.00 0.00 2.67
251 252 8.581578 ACGGACACCAGAAATAAAAATTACATT 58.418 29.630 0.00 0.00 0.00 2.71
252 253 8.117813 ACGGACACCAGAAATAAAAATTACAT 57.882 30.769 0.00 0.00 0.00 2.29
253 254 7.513371 ACGGACACCAGAAATAAAAATTACA 57.487 32.000 0.00 0.00 0.00 2.41
254 255 7.863877 ACAACGGACACCAGAAATAAAAATTAC 59.136 33.333 0.00 0.00 0.00 1.89
255 256 7.942990 ACAACGGACACCAGAAATAAAAATTA 58.057 30.769 0.00 0.00 0.00 1.40
256 257 6.811954 ACAACGGACACCAGAAATAAAAATT 58.188 32.000 0.00 0.00 0.00 1.82
257 258 6.399639 ACAACGGACACCAGAAATAAAAAT 57.600 33.333 0.00 0.00 0.00 1.82
258 259 5.838531 ACAACGGACACCAGAAATAAAAA 57.161 34.783 0.00 0.00 0.00 1.94
259 260 5.821470 TGTACAACGGACACCAGAAATAAAA 59.179 36.000 0.00 0.00 0.00 1.52
260 261 5.366460 TGTACAACGGACACCAGAAATAAA 58.634 37.500 0.00 0.00 0.00 1.40
261 262 4.958509 TGTACAACGGACACCAGAAATAA 58.041 39.130 0.00 0.00 0.00 1.40
262 263 4.562082 CTGTACAACGGACACCAGAAATA 58.438 43.478 0.00 0.00 0.00 1.40
263 264 3.399330 CTGTACAACGGACACCAGAAAT 58.601 45.455 0.00 0.00 0.00 2.17
264 265 2.828877 CTGTACAACGGACACCAGAAA 58.171 47.619 0.00 0.00 0.00 2.52
265 266 1.539496 GCTGTACAACGGACACCAGAA 60.539 52.381 0.00 0.00 0.00 3.02
266 267 0.032952 GCTGTACAACGGACACCAGA 59.967 55.000 0.00 0.00 0.00 3.86
267 268 0.949105 GGCTGTACAACGGACACCAG 60.949 60.000 0.00 0.00 31.10 4.00
268 269 1.070105 GGCTGTACAACGGACACCA 59.930 57.895 0.00 0.00 31.10 4.17
269 270 0.321298 ATGGCTGTACAACGGACACC 60.321 55.000 0.00 0.00 46.95 4.16
270 271 0.796312 CATGGCTGTACAACGGACAC 59.204 55.000 0.00 0.00 46.95 3.67
272 273 2.024176 ATCATGGCTGTACAACGGAC 57.976 50.000 0.00 0.00 31.51 4.79
273 274 2.027653 TCAATCATGGCTGTACAACGGA 60.028 45.455 0.00 0.00 0.00 4.69
274 275 2.355197 TCAATCATGGCTGTACAACGG 58.645 47.619 0.00 0.00 0.00 4.44
275 276 3.684305 TCTTCAATCATGGCTGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
276 277 5.355071 TCATCTTCAATCATGGCTGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
277 278 5.499313 TCATCTTCAATCATGGCTGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
278 279 5.101648 TCATCTTCAATCATGGCTGTACA 57.898 39.130 0.00 0.00 0.00 2.90
279 280 6.630444 ATTCATCTTCAATCATGGCTGTAC 57.370 37.500 0.00 0.00 0.00 2.90
280 281 8.750515 TTTATTCATCTTCAATCATGGCTGTA 57.249 30.769 0.00 0.00 0.00 2.74
281 282 7.649533 TTTATTCATCTTCAATCATGGCTGT 57.350 32.000 0.00 0.00 0.00 4.40
282 283 9.193133 GAATTTATTCATCTTCAATCATGGCTG 57.807 33.333 0.00 0.00 36.80 4.85
283 284 8.080417 CGAATTTATTCATCTTCAATCATGGCT 58.920 33.333 0.00 0.00 36.61 4.75
284 285 8.077991 TCGAATTTATTCATCTTCAATCATGGC 58.922 33.333 0.00 0.00 36.61 4.40
285 286 9.955208 TTCGAATTTATTCATCTTCAATCATGG 57.045 29.630 0.00 0.00 36.61 3.66
323 324 1.265905 CGCCGCTCAACTAACCTTTTT 59.734 47.619 0.00 0.00 0.00 1.94
324 325 0.872388 CGCCGCTCAACTAACCTTTT 59.128 50.000 0.00 0.00 0.00 2.27
325 326 0.953960 CCGCCGCTCAACTAACCTTT 60.954 55.000 0.00 0.00 0.00 3.11
326 327 1.375523 CCGCCGCTCAACTAACCTT 60.376 57.895 0.00 0.00 0.00 3.50
327 328 2.264794 CCGCCGCTCAACTAACCT 59.735 61.111 0.00 0.00 0.00 3.50
328 329 3.497031 GCCGCCGCTCAACTAACC 61.497 66.667 0.00 0.00 0.00 2.85
329 330 2.322081 TTGCCGCCGCTCAACTAAC 61.322 57.895 0.00 0.00 35.36 2.34
330 331 2.031314 TTGCCGCCGCTCAACTAA 59.969 55.556 0.00 0.00 35.36 2.24
331 332 2.740826 GTTGCCGCCGCTCAACTA 60.741 61.111 14.42 0.00 39.41 2.24
332 333 4.927782 TGTTGCCGCCGCTCAACT 62.928 61.111 19.39 0.00 42.11 3.16
333 334 3.267597 ATTGTTGCCGCCGCTCAAC 62.268 57.895 14.68 14.68 41.99 3.18
334 335 2.976840 GATTGTTGCCGCCGCTCAA 61.977 57.895 0.00 4.91 35.37 3.02
335 336 3.430862 GATTGTTGCCGCCGCTCA 61.431 61.111 0.00 0.00 35.36 4.26
336 337 2.764314 ATGATTGTTGCCGCCGCTC 61.764 57.895 0.00 0.00 35.36 5.03
337 338 2.751436 ATGATTGTTGCCGCCGCT 60.751 55.556 0.00 0.00 35.36 5.52
338 339 2.580326 CATGATTGTTGCCGCCGC 60.580 61.111 0.00 0.00 0.00 6.53
339 340 1.727511 ATCCATGATTGTTGCCGCCG 61.728 55.000 0.00 0.00 0.00 6.46
340 341 0.249155 CATCCATGATTGTTGCCGCC 60.249 55.000 0.00 0.00 0.00 6.13
384 385 4.486125 TTTCCATCATCCAAGTGATCGA 57.514 40.909 0.00 0.00 36.72 3.59
405 406 3.705051 TCCTCTAATCCACCGTAGTGTT 58.295 45.455 0.00 0.00 42.88 3.32
425 426 2.751259 TCTTCTTGTGCTTCATGGCATC 59.249 45.455 0.00 0.00 44.34 3.91
485 486 2.297701 GTTGACTTGAGGGCTTTGACA 58.702 47.619 0.00 0.00 0.00 3.58
493 494 0.969894 AGACGAGGTTGACTTGAGGG 59.030 55.000 0.00 0.00 34.46 4.30
494 495 1.067495 GGAGACGAGGTTGACTTGAGG 60.067 57.143 0.00 0.00 34.46 3.86
552 879 1.674980 GGAGAGTCGGAGGACACGT 60.675 63.158 0.00 0.00 45.92 4.49
566 893 0.183014 ATTAGTCGGAGCCTCGGAGA 59.817 55.000 6.58 0.00 0.00 3.71
567 894 0.594110 GATTAGTCGGAGCCTCGGAG 59.406 60.000 1.73 0.00 0.00 4.63
568 895 1.164662 CGATTAGTCGGAGCCTCGGA 61.165 60.000 0.00 0.00 44.00 4.55
569 896 1.283181 CGATTAGTCGGAGCCTCGG 59.717 63.158 0.00 0.00 44.00 4.63
570 897 4.924924 CGATTAGTCGGAGCCTCG 57.075 61.111 0.00 0.00 44.00 4.63
587 914 2.087646 GAAATCACAGTGGAGGGAAGC 58.912 52.381 0.00 0.00 0.00 3.86
617 944 6.095440 GGCAAGCTCAGATTGGAATAAAGTAA 59.905 38.462 4.50 0.00 0.00 2.24
618 945 5.590259 GGCAAGCTCAGATTGGAATAAAGTA 59.410 40.000 4.50 0.00 0.00 2.24
648 975 5.892119 TCTCACGGAATAAATCCTACAGTCT 59.108 40.000 0.00 0.00 46.98 3.24
650 977 6.732896 ATCTCACGGAATAAATCCTACAGT 57.267 37.500 0.00 0.00 46.98 3.55
712 1046 8.564574 TGAATGTTGTTGGAGTTGTAGAAATAC 58.435 33.333 0.00 0.00 0.00 1.89
730 1064 4.326413 TCGAATTTCGAGCTGAATGTTG 57.674 40.909 17.08 0.00 44.82 3.33
829 1176 1.468565 GCACATCCATGTCACATGCAC 60.469 52.381 12.76 0.00 39.39 4.57
830 1177 0.812549 GCACATCCATGTCACATGCA 59.187 50.000 12.76 0.00 39.39 3.96
831 1178 0.812549 TGCACATCCATGTCACATGC 59.187 50.000 12.76 1.73 39.39 4.06
850 1197 7.628769 AAAATTTCTCAAAACAAGTGGCAAT 57.371 28.000 0.00 0.00 0.00 3.56
851 1198 8.553459 TTAAAATTTCTCAAAACAAGTGGCAA 57.447 26.923 0.00 0.00 0.00 4.52
870 1217 7.524065 CCGTGAGATCGGTTTTAGTTTAAAAT 58.476 34.615 0.00 0.00 44.77 1.82
899 1249 1.822990 GTAGGATCCGTTGTCAGGTGA 59.177 52.381 5.98 0.00 0.00 4.02
905 1255 8.564509 AGACTATAATAGTAGGATCCGTTGTC 57.435 38.462 5.98 4.84 39.59 3.18
946 1296 0.875059 GCTAGTTTTGAAGGCGCACT 59.125 50.000 10.83 4.40 0.00 4.40
980 1330 6.529220 AGCTCCACCTGCTTCTTTATATAAG 58.471 40.000 0.00 0.00 37.52 1.73
981 1331 6.500589 AGCTCCACCTGCTTCTTTATATAA 57.499 37.500 0.00 0.00 37.52 0.98
982 1332 6.500589 AAGCTCCACCTGCTTCTTTATATA 57.499 37.500 0.00 0.00 46.39 0.86
983 1333 5.379706 AAGCTCCACCTGCTTCTTTATAT 57.620 39.130 0.00 0.00 46.39 0.86
984 1334 4.844349 AAGCTCCACCTGCTTCTTTATA 57.156 40.909 0.00 0.00 46.39 0.98
985 1335 3.728385 AAGCTCCACCTGCTTCTTTAT 57.272 42.857 0.00 0.00 46.39 1.40
986 1336 3.326588 TGTAAGCTCCACCTGCTTCTTTA 59.673 43.478 4.18 0.00 46.39 1.85
987 1337 2.106511 TGTAAGCTCCACCTGCTTCTTT 59.893 45.455 4.18 0.00 46.39 2.52
988 1338 1.699634 TGTAAGCTCCACCTGCTTCTT 59.300 47.619 4.18 0.00 46.39 2.52
989 1339 1.352083 TGTAAGCTCCACCTGCTTCT 58.648 50.000 4.18 0.00 46.39 2.85
990 1340 2.185004 TTGTAAGCTCCACCTGCTTC 57.815 50.000 4.18 0.00 46.39 3.86
992 1342 1.271597 CCTTTGTAAGCTCCACCTGCT 60.272 52.381 0.00 0.00 43.32 4.24
993 1343 1.168714 CCTTTGTAAGCTCCACCTGC 58.831 55.000 0.00 0.00 0.00 4.85
994 1344 2.859165 TCCTTTGTAAGCTCCACCTG 57.141 50.000 0.00 0.00 0.00 4.00
996 1346 3.350219 TCATCCTTTGTAAGCTCCACC 57.650 47.619 0.00 0.00 0.00 4.61
998 1348 3.244875 TGCTTCATCCTTTGTAAGCTCCA 60.245 43.478 7.35 0.00 43.69 3.86
999 1349 3.127721 GTGCTTCATCCTTTGTAAGCTCC 59.872 47.826 7.35 0.00 43.69 4.70
1000 1350 4.006319 AGTGCTTCATCCTTTGTAAGCTC 58.994 43.478 7.35 4.10 43.69 4.09
1002 1352 3.753272 TCAGTGCTTCATCCTTTGTAAGC 59.247 43.478 0.00 0.00 43.62 3.09
1003 1353 5.618640 GCTTCAGTGCTTCATCCTTTGTAAG 60.619 44.000 0.00 0.00 0.00 2.34
1004 1354 4.216257 GCTTCAGTGCTTCATCCTTTGTAA 59.784 41.667 0.00 0.00 0.00 2.41
1005 1355 3.753272 GCTTCAGTGCTTCATCCTTTGTA 59.247 43.478 0.00 0.00 0.00 2.41
1007 1357 2.818432 AGCTTCAGTGCTTCATCCTTTG 59.182 45.455 0.00 0.00 40.93 2.77
1020 1370 2.862541 TGTTGTTATGCCAGCTTCAGT 58.137 42.857 0.00 0.00 0.00 3.41
1078 1431 0.992802 GGCGTCTTCTTCACATCGAC 59.007 55.000 0.00 0.00 0.00 4.20
1094 1447 4.559063 CCTCCTGCTCCCATGGCG 62.559 72.222 6.09 0.00 0.00 5.69
1116 1469 3.196207 ATGCCAGCGGTTGTGGAGT 62.196 57.895 0.00 0.00 37.23 3.85
1176 1529 1.068474 CGACCATCTCAACACGGAAC 58.932 55.000 0.00 0.00 0.00 3.62
1313 1666 5.867174 TCCGGTGATATGCTATTATCAAACG 59.133 40.000 0.00 15.21 39.61 3.60
1386 1749 7.255590 CCATAGTCAAACAACAGGATCAACTTT 60.256 37.037 0.00 0.00 0.00 2.66
1393 1756 6.068010 TCAAACCATAGTCAAACAACAGGAT 58.932 36.000 0.00 0.00 0.00 3.24
1402 1765 5.316167 ACAGAGCATCAAACCATAGTCAAA 58.684 37.500 0.00 0.00 37.82 2.69
1432 1796 8.062065 AGAGAGAAATACCACTCTTTCTACTG 57.938 38.462 0.00 0.00 42.51 2.74
1445 1809 9.364989 GTCTAATGCATATGAGAGAGAAATACC 57.635 37.037 6.97 0.00 0.00 2.73
1485 1853 1.682854 ACATTCAGTTTGGTGGCACAG 59.317 47.619 20.82 1.73 41.80 3.66
1504 1874 1.608283 GGCTGTAGAAGACCCACACAC 60.608 57.143 0.00 0.00 0.00 3.82
1514 1884 4.887071 ACTGAGATAGTGAGGCTGTAGAAG 59.113 45.833 0.00 0.00 38.49 2.85
1549 1919 0.181350 CCCCCTCAGCATCAACTACC 59.819 60.000 0.00 0.00 0.00 3.18
1633 2003 0.618107 TGCCGGTATAACCCCACTCA 60.618 55.000 1.90 0.00 33.75 3.41
1651 2021 4.074970 CCCCATTCTCCCTTTCGAATATG 58.925 47.826 0.00 0.00 0.00 1.78
1768 2138 9.439500 AAATTCACAACAATAAATAGCAGCAAT 57.561 25.926 0.00 0.00 0.00 3.56
1792 2162 9.416284 GGGGTAATCCTCATTTTCTATACAAAA 57.584 33.333 0.00 0.00 33.58 2.44
1793 2163 8.002459 GGGGGTAATCCTCATTTTCTATACAAA 58.998 37.037 0.00 0.00 35.50 2.83
1794 2164 7.523415 GGGGGTAATCCTCATTTTCTATACAA 58.477 38.462 0.00 0.00 35.50 2.41
1795 2165 6.239772 CGGGGGTAATCCTCATTTTCTATACA 60.240 42.308 0.00 0.00 35.01 2.29
1796 2166 6.013984 TCGGGGGTAATCCTCATTTTCTATAC 60.014 42.308 0.00 0.00 35.01 1.47
1797 2167 6.086095 TCGGGGGTAATCCTCATTTTCTATA 58.914 40.000 0.00 0.00 35.01 1.31
1798 2168 4.911522 TCGGGGGTAATCCTCATTTTCTAT 59.088 41.667 0.00 0.00 35.01 1.98
1799 2169 4.300345 TCGGGGGTAATCCTCATTTTCTA 58.700 43.478 0.00 0.00 35.01 2.10
1800 2170 3.120108 TCGGGGGTAATCCTCATTTTCT 58.880 45.455 0.00 0.00 35.01 2.52
1801 2171 3.570912 TCGGGGGTAATCCTCATTTTC 57.429 47.619 0.00 0.00 35.01 2.29
1802 2172 5.860648 ATATCGGGGGTAATCCTCATTTT 57.139 39.130 0.00 0.00 35.01 1.82
1803 2173 5.860648 AATATCGGGGGTAATCCTCATTT 57.139 39.130 0.00 0.00 35.01 2.32
1804 2174 5.860648 AAATATCGGGGGTAATCCTCATT 57.139 39.130 0.00 0.00 35.01 2.57
1805 2175 7.036863 ACAATAAATATCGGGGGTAATCCTCAT 60.037 37.037 0.00 0.00 35.01 2.90
1806 2176 6.273730 ACAATAAATATCGGGGGTAATCCTCA 59.726 38.462 0.00 0.00 35.01 3.86
1807 2177 6.718294 ACAATAAATATCGGGGGTAATCCTC 58.282 40.000 0.00 0.00 35.33 3.71
1808 2178 6.713731 ACAATAAATATCGGGGGTAATCCT 57.286 37.500 0.00 0.00 35.33 3.24
1809 2179 6.717997 ACAACAATAAATATCGGGGGTAATCC 59.282 38.462 0.00 0.00 0.00 3.01
1810 2180 7.446013 TCACAACAATAAATATCGGGGGTAATC 59.554 37.037 0.00 0.00 0.00 1.75
1811 2181 7.291566 TCACAACAATAAATATCGGGGGTAAT 58.708 34.615 0.00 0.00 0.00 1.89
1812 2182 6.660800 TCACAACAATAAATATCGGGGGTAA 58.339 36.000 0.00 0.00 0.00 2.85
1813 2183 6.249911 TCACAACAATAAATATCGGGGGTA 57.750 37.500 0.00 0.00 0.00 3.69
1814 2184 5.118729 TCACAACAATAAATATCGGGGGT 57.881 39.130 0.00 0.00 0.00 4.95
1815 2185 6.264292 TCATTCACAACAATAAATATCGGGGG 59.736 38.462 0.00 0.00 0.00 5.40
1816 2186 7.270757 TCATTCACAACAATAAATATCGGGG 57.729 36.000 0.00 0.00 0.00 5.73
1817 2187 8.620416 TCTTCATTCACAACAATAAATATCGGG 58.380 33.333 0.00 0.00 0.00 5.14
1818 2188 9.655769 CTCTTCATTCACAACAATAAATATCGG 57.344 33.333 0.00 0.00 0.00 4.18
1824 2194 9.734620 CTGAAACTCTTCATTCACAACAATAAA 57.265 29.630 0.00 0.00 40.78 1.40
1825 2195 7.862372 GCTGAAACTCTTCATTCACAACAATAA 59.138 33.333 0.00 0.00 40.78 1.40
1826 2196 7.229306 AGCTGAAACTCTTCATTCACAACAATA 59.771 33.333 0.00 0.00 40.78 1.90
1831 2201 5.589855 TGAAGCTGAAACTCTTCATTCACAA 59.410 36.000 0.00 0.00 42.43 3.33
1871 2272 3.894427 ACACCTGGTATGCACAAAAATGA 59.106 39.130 0.00 0.00 0.00 2.57
1873 2274 4.558496 CGAACACCTGGTATGCACAAAAAT 60.558 41.667 0.00 0.00 0.00 1.82
1874 2275 3.243234 CGAACACCTGGTATGCACAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
1978 2381 0.883370 GGCCCGTATCGACCAATTCC 60.883 60.000 0.00 0.00 0.00 3.01
1990 2393 2.044555 CAGAGACTCGTGGCCCGTA 61.045 63.158 12.46 1.00 37.94 4.02
2151 3793 1.836166 TCCCTTCTTGGATCTGCAGAG 59.164 52.381 22.96 8.09 38.35 3.35
2187 3834 2.373540 TGCTGCTTCATTTGCAATCC 57.626 45.000 0.00 0.00 40.13 3.01
2266 3913 7.094205 ACAAATACTGGCAGATAAACTTTGGAG 60.094 37.037 23.66 2.98 0.00 3.86
2314 3961 1.138859 TGGGAGAAGTGCATATCACCG 59.861 52.381 10.51 0.00 46.81 4.94
2365 4012 6.204495 GCTCAAGGAATCCACTCATTTCTATC 59.796 42.308 0.61 0.00 0.00 2.08
2457 4665 6.769134 ATGAATCAGCAGAATTTCACATGA 57.231 33.333 0.00 0.20 31.45 3.07
2773 5018 6.569226 CGGGGATGGTAGAGTACTTAATTACG 60.569 46.154 0.00 0.00 0.00 3.18
2818 5063 9.884814 ATGTCCCTCTCTTATTTAGTACATAGT 57.115 33.333 0.00 0.00 0.00 2.12
2849 5095 7.745620 ACATAACCCAAAGTTCAGAACTAAG 57.254 36.000 16.46 11.34 41.91 2.18
2851 5097 7.335924 GCATACATAACCCAAAGTTCAGAACTA 59.664 37.037 16.46 0.00 41.91 2.24
2881 5135 6.016360 TGGACAACATGACAACAAAAGATAGG 60.016 38.462 0.00 0.00 0.00 2.57
2980 5234 2.910688 ATTGCAGTATACCTGGTCGG 57.089 50.000 0.63 0.00 41.81 4.79
2992 5246 0.112218 TGTGTTGGGGCTATTGCAGT 59.888 50.000 0.66 0.00 41.91 4.40
3105 5393 3.503748 ACAAATGTAGCACAGGAAGCTTC 59.496 43.478 18.54 18.54 43.25 3.86
3112 5400 3.249799 TCGTCAAACAAATGTAGCACAGG 59.750 43.478 0.00 0.00 0.00 4.00
3218 5517 7.120051 TGCTTTTGGGTAATATAACCTAGCAA 58.880 34.615 11.39 0.00 39.65 3.91
3265 5568 4.865905 ACTGACTAGACTCACATCCTCAT 58.134 43.478 0.00 0.00 0.00 2.90
3269 5572 6.269315 CACATTACTGACTAGACTCACATCC 58.731 44.000 0.00 0.00 0.00 3.51
3270 5573 5.746245 GCACATTACTGACTAGACTCACATC 59.254 44.000 0.00 0.00 0.00 3.06
3298 6011 3.118811 GGAGATACTATCAGGAGCCATGC 60.119 52.174 0.00 0.00 0.00 4.06
3331 6044 4.986659 AGTACTCGTAACATTGAAAACGCT 59.013 37.500 0.00 0.00 35.40 5.07
3347 6060 8.033626 ACCTGGAGTTCTAAATAAAAGTACTCG 58.966 37.037 0.00 0.00 40.39 4.18
3353 6066 6.817765 TGCACCTGGAGTTCTAAATAAAAG 57.182 37.500 0.00 0.00 0.00 2.27
3362 6075 1.059098 TGTCATGCACCTGGAGTTCT 58.941 50.000 0.00 0.00 0.00 3.01
3398 6111 4.024302 GCGTTTTGGCCTTATATCCTACAC 60.024 45.833 3.32 0.00 0.00 2.90
3440 6153 1.479709 ACATCCGGAAGTCTCCTCAG 58.520 55.000 9.01 0.00 39.93 3.35
3541 6254 4.269123 TGATCGCGCATTATTTTTAGACGT 59.731 37.500 8.75 0.00 0.00 4.34
3558 6271 5.725110 AGAGATTGTGTAAACATGATCGC 57.275 39.130 0.00 0.00 0.00 4.58
3618 6331 6.767423 TCAGGGTCACACATACATAAATGATG 59.233 38.462 0.00 0.00 41.79 3.07
3630 6343 1.704628 TCCACATTCAGGGTCACACAT 59.295 47.619 0.00 0.00 0.00 3.21
3641 6354 5.554437 TTACAACTACTGGTCCACATTCA 57.446 39.130 0.00 0.00 0.00 2.57
3668 6381 9.296400 GACAAGAGAGAACTCAATAGACAATAC 57.704 37.037 4.64 0.00 44.79 1.89
3690 6403 7.381948 CACAAAACTTTGCAGCAATATAGACAA 59.618 33.333 9.12 0.00 41.79 3.18
3691 6404 6.862608 CACAAAACTTTGCAGCAATATAGACA 59.137 34.615 9.12 0.00 41.79 3.41
3692 6405 7.083858 TCACAAAACTTTGCAGCAATATAGAC 58.916 34.615 9.12 0.00 41.79 2.59
3693 6406 7.213216 TCACAAAACTTTGCAGCAATATAGA 57.787 32.000 9.12 0.00 41.79 1.98
3694 6407 7.543172 ACATCACAAAACTTTGCAGCAATATAG 59.457 33.333 9.12 6.20 41.79 1.31
3695 6408 7.377398 ACATCACAAAACTTTGCAGCAATATA 58.623 30.769 9.12 0.00 41.79 0.86
3696 6409 6.225318 ACATCACAAAACTTTGCAGCAATAT 58.775 32.000 9.12 0.00 41.79 1.28
3697 6410 5.599732 ACATCACAAAACTTTGCAGCAATA 58.400 33.333 9.12 0.00 41.79 1.90
3698 6411 4.444536 ACATCACAAAACTTTGCAGCAAT 58.555 34.783 9.12 0.00 41.79 3.56
3821 6534 9.901172 ACAACTCCCACTATATTACCTAAAAAG 57.099 33.333 0.00 0.00 0.00 2.27
3835 6548 1.374947 GGCAGCACAACTCCCACTA 59.625 57.895 0.00 0.00 0.00 2.74
3836 6549 2.113986 GGCAGCACAACTCCCACT 59.886 61.111 0.00 0.00 0.00 4.00
3838 6551 2.803155 GATCGGCAGCACAACTCCCA 62.803 60.000 0.00 0.00 0.00 4.37
3839 6552 2.045926 ATCGGCAGCACAACTCCC 60.046 61.111 0.00 0.00 0.00 4.30
3841 6554 2.456119 CGGATCGGCAGCACAACTC 61.456 63.158 0.00 0.00 0.00 3.01
3842 6555 2.434884 CGGATCGGCAGCACAACT 60.435 61.111 0.00 0.00 0.00 3.16
3858 6571 4.793071 TGTTGAAACATATCAAAGGTGCG 58.207 39.130 0.00 0.00 40.76 5.34
3869 6582 7.445096 TCAATCTGAAAGCTCTGTTGAAACATA 59.555 33.333 0.00 0.00 38.41 2.29
3888 6601 7.178712 ACGAGTACAAAGAACTTTCAATCTG 57.821 36.000 0.00 0.00 0.00 2.90
3897 6610 4.761975 TGTTGGAACGAGTACAAAGAACT 58.238 39.130 0.00 0.00 0.00 3.01
3898 6611 5.473796 TTGTTGGAACGAGTACAAAGAAC 57.526 39.130 0.00 0.00 0.00 3.01
3900 6613 5.120399 ACATTGTTGGAACGAGTACAAAGA 58.880 37.500 0.00 0.00 34.54 2.52
3901 6614 5.418310 ACATTGTTGGAACGAGTACAAAG 57.582 39.130 0.00 0.00 34.54 2.77
3904 6617 5.204409 ACTACATTGTTGGAACGAGTACA 57.796 39.130 0.00 0.00 0.00 2.90
3905 6618 5.693104 TGAACTACATTGTTGGAACGAGTAC 59.307 40.000 0.00 0.00 0.00 2.73
3906 6619 5.845103 TGAACTACATTGTTGGAACGAGTA 58.155 37.500 0.00 0.00 0.00 2.59
3907 6620 4.699637 TGAACTACATTGTTGGAACGAGT 58.300 39.130 0.00 0.00 0.00 4.18
3952 6683 1.025041 CTGTGAGACCGATCCGATCA 58.975 55.000 9.07 0.00 0.00 2.92
3966 6697 1.273759 AGAGCCAGAGCAATCTGTGA 58.726 50.000 4.68 0.00 43.56 3.58
3979 6716 3.580022 TCTCTGTTCTCATTCAAGAGCCA 59.420 43.478 0.00 0.00 35.59 4.75
4062 6799 1.443802 CGAGAGGAGGAAAGTTTGGC 58.556 55.000 0.00 0.00 0.00 4.52
4227 6964 6.374417 TTGGGCTTCTATAGTTCTCTTGTT 57.626 37.500 0.00 0.00 0.00 2.83
4320 7057 1.202359 GCTTTTCGTGGCAAGAAACCA 60.202 47.619 24.72 12.76 37.33 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.