Multiple sequence alignment - TraesCS3A01G071500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G071500 chr3A 100.000 4324 0 0 1 4324 44428022 44432345 0.000000e+00 7986.0
1 TraesCS3A01G071500 chr3A 88.000 125 9 3 4201 4324 535002660 535002541 4.510000e-30 143.0
2 TraesCS3A01G071500 chr3B 94.635 3057 100 25 663 3685 53812486 53815512 0.000000e+00 4678.0
3 TraesCS3A01G071500 chr3D 94.858 2392 78 19 565 2936 31715975 31718341 0.000000e+00 3694.0
4 TraesCS3A01G071500 chr3D 92.892 1421 57 17 2932 4323 31723919 31725324 0.000000e+00 2025.0
5 TraesCS3A01G071500 chr3D 87.891 512 52 8 1 505 161721646 161721138 1.040000e-165 593.0
6 TraesCS3A01G071500 chr3D 88.732 284 29 1 1 281 309924937 309925220 1.150000e-90 344.0
7 TraesCS3A01G071500 chr3D 95.192 104 5 0 132 235 31711792 31711895 9.620000e-37 165.0
8 TraesCS3A01G071500 chr3D 95.146 103 3 1 1 101 31708543 31708645 1.240000e-35 161.0
9 TraesCS3A01G071500 chr3D 85.621 153 12 6 4173 4324 415538603 415538746 7.490000e-33 152.0
10 TraesCS3A01G071500 chr1A 86.576 514 54 11 1 501 1645060 1645571 1.760000e-153 553.0
11 TraesCS3A01G071500 chr2D 100.000 29 0 0 483 511 645843996 645844024 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G071500 chr3A 44428022 44432345 4323 False 7986 7986 100.000 1 4324 1 chr3A.!!$F1 4323
1 TraesCS3A01G071500 chr3B 53812486 53815512 3026 False 4678 4678 94.635 663 3685 1 chr3B.!!$F1 3022
2 TraesCS3A01G071500 chr3D 31715975 31718341 2366 False 3694 3694 94.858 565 2936 1 chr3D.!!$F1 2371
3 TraesCS3A01G071500 chr3D 31723919 31725324 1405 False 2025 2025 92.892 2932 4323 1 chr3D.!!$F2 1391
4 TraesCS3A01G071500 chr3D 161721138 161721646 508 True 593 593 87.891 1 505 1 chr3D.!!$R1 504
5 TraesCS3A01G071500 chr1A 1645060 1645571 511 False 553 553 86.576 1 501 1 chr1A.!!$F1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 419 0.111446 TGGAAGGGCAATTTCGTCCA 59.889 50.0 0.00 0.0 38.76 4.02 F
426 431 0.787787 TTCGTCCAAAATCACTCGCG 59.212 50.0 0.00 0.0 0.00 5.87 F
1329 1351 0.108585 TGGCTCCTTCTGTTGTCACC 59.891 55.0 0.00 0.0 0.00 4.02 F
1347 1373 0.527113 CCGATGCCTGCATTTTGTGA 59.473 50.0 6.02 0.0 36.70 3.58 F
2394 2462 1.009389 CGTCTTGGAGTTCACTCGGC 61.009 60.0 0.83 0.0 43.76 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1350 0.527113 TCACAAAATGCAGGCATCGG 59.473 50.0 7.29 3.09 35.31 4.18 R
2039 2107 1.027357 CAAACAGTGCACCTGAAGCT 58.973 50.0 14.63 0.00 44.49 3.74 R
2900 2972 0.250467 ATGCACTGGTTGACGCTCTT 60.250 50.0 0.00 0.00 0.00 2.85 R
2957 3029 2.002018 AAAACCAGCGGGAGGGAACA 62.002 55.0 10.86 0.00 38.05 3.18 R
4242 4342 1.543944 CCTGGGGCATGGACCAAAAC 61.544 60.0 0.00 0.00 36.09 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.250901 GCCTCCTTCAACAGAGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
109 110 2.424684 AACCTTCCTCCTCACCTCTT 57.575 50.000 0.00 0.00 0.00 2.85
120 121 2.534990 CTCACCTCTTCCTCAACTCCT 58.465 52.381 0.00 0.00 0.00 3.69
129 130 1.604378 CTCAACTCCTCCGGCCATT 59.396 57.895 2.24 0.00 0.00 3.16
130 131 0.462759 CTCAACTCCTCCGGCCATTC 60.463 60.000 2.24 0.00 0.00 2.67
158 159 2.262915 CTCCACCACACCTCTCGC 59.737 66.667 0.00 0.00 0.00 5.03
203 207 1.006805 GTGAGGCGGAGATCGATGG 60.007 63.158 0.54 0.00 42.43 3.51
211 215 0.902516 GGAGATCGATGGGAGAGGGG 60.903 65.000 0.54 0.00 0.00 4.79
218 222 0.766288 GATGGGAGAGGGGGAGGAAG 60.766 65.000 0.00 0.00 0.00 3.46
219 223 1.541168 ATGGGAGAGGGGGAGGAAGT 61.541 60.000 0.00 0.00 0.00 3.01
262 266 1.987855 GGAGTGTGGGGATCGGTGA 60.988 63.158 0.00 0.00 0.00 4.02
270 274 1.381327 GGGATCGGTGAGGAGGTCA 60.381 63.158 0.00 0.00 0.00 4.02
281 285 2.294078 GGAGGTCAGGTGGTGGGAG 61.294 68.421 0.00 0.00 0.00 4.30
316 321 3.003173 CGAGCAGGAGGTGGGGAA 61.003 66.667 0.00 0.00 0.00 3.97
317 322 2.592993 CGAGCAGGAGGTGGGGAAA 61.593 63.158 0.00 0.00 0.00 3.13
318 323 1.767692 GAGCAGGAGGTGGGGAAAA 59.232 57.895 0.00 0.00 0.00 2.29
319 324 0.322906 GAGCAGGAGGTGGGGAAAAG 60.323 60.000 0.00 0.00 0.00 2.27
320 325 1.979155 GCAGGAGGTGGGGAAAAGC 60.979 63.158 0.00 0.00 0.00 3.51
321 326 1.675641 CAGGAGGTGGGGAAAAGCG 60.676 63.158 0.00 0.00 0.00 4.68
322 327 2.361230 GGAGGTGGGGAAAAGCGG 60.361 66.667 0.00 0.00 0.00 5.52
323 328 3.062466 GAGGTGGGGAAAAGCGGC 61.062 66.667 0.00 0.00 0.00 6.53
326 331 3.733960 GTGGGGAAAAGCGGCGAC 61.734 66.667 12.98 1.23 0.00 5.19
341 346 2.733517 GGCGACGAGAAAGAGATAAGG 58.266 52.381 0.00 0.00 0.00 2.69
342 347 2.544069 GGCGACGAGAAAGAGATAAGGG 60.544 54.545 0.00 0.00 0.00 3.95
343 348 2.544069 GCGACGAGAAAGAGATAAGGGG 60.544 54.545 0.00 0.00 0.00 4.79
344 349 2.034812 CGACGAGAAAGAGATAAGGGGG 59.965 54.545 0.00 0.00 0.00 5.40
371 376 4.626081 GCGATGGGGCTATGCGGT 62.626 66.667 0.00 0.00 0.00 5.68
372 377 2.666190 CGATGGGGCTATGCGGTG 60.666 66.667 0.00 0.00 0.00 4.94
373 378 2.281761 GATGGGGCTATGCGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
374 379 3.850098 GATGGGGCTATGCGGTGGG 62.850 68.421 0.00 0.00 0.00 4.61
377 382 3.165685 GGGCTATGCGGTGGGGTA 61.166 66.667 0.00 0.00 0.00 3.69
378 383 2.426023 GGCTATGCGGTGGGGTAG 59.574 66.667 0.00 0.00 0.00 3.18
379 384 2.426023 GCTATGCGGTGGGGTAGG 59.574 66.667 0.00 0.00 0.00 3.18
380 385 3.148084 CTATGCGGTGGGGTAGGG 58.852 66.667 0.00 0.00 0.00 3.53
381 386 3.165685 TATGCGGTGGGGTAGGGC 61.166 66.667 0.00 0.00 0.00 5.19
391 396 4.410400 GGTAGGGCGCTGGCTGTT 62.410 66.667 14.51 0.00 39.81 3.16
392 397 2.820037 GTAGGGCGCTGGCTGTTC 60.820 66.667 14.51 0.00 39.81 3.18
393 398 4.451150 TAGGGCGCTGGCTGTTCG 62.451 66.667 14.51 0.00 39.81 3.95
398 403 4.680237 CGCTGGCTGTTCGGTGGA 62.680 66.667 0.00 0.00 0.00 4.02
399 404 2.281484 GCTGGCTGTTCGGTGGAA 60.281 61.111 0.00 0.00 0.00 3.53
400 405 2.328099 GCTGGCTGTTCGGTGGAAG 61.328 63.158 0.00 0.00 31.49 3.46
401 406 1.672356 CTGGCTGTTCGGTGGAAGG 60.672 63.158 0.00 0.00 31.49 3.46
402 407 2.359975 GGCTGTTCGGTGGAAGGG 60.360 66.667 0.00 0.00 31.49 3.95
403 408 3.056328 GCTGTTCGGTGGAAGGGC 61.056 66.667 0.00 0.00 31.49 5.19
404 409 2.429930 CTGTTCGGTGGAAGGGCA 59.570 61.111 0.00 0.00 31.49 5.36
405 410 1.228124 CTGTTCGGTGGAAGGGCAA 60.228 57.895 0.00 0.00 31.49 4.52
406 411 0.609131 CTGTTCGGTGGAAGGGCAAT 60.609 55.000 0.00 0.00 31.49 3.56
407 412 0.178975 TGTTCGGTGGAAGGGCAATT 60.179 50.000 0.00 0.00 31.49 2.32
408 413 0.966179 GTTCGGTGGAAGGGCAATTT 59.034 50.000 0.00 0.00 31.49 1.82
409 414 1.067846 GTTCGGTGGAAGGGCAATTTC 60.068 52.381 0.00 0.00 31.49 2.17
410 415 0.958382 TCGGTGGAAGGGCAATTTCG 60.958 55.000 0.00 0.00 0.00 3.46
411 416 1.241315 CGGTGGAAGGGCAATTTCGT 61.241 55.000 0.00 0.00 0.00 3.85
412 417 0.526211 GGTGGAAGGGCAATTTCGTC 59.474 55.000 0.00 0.00 0.00 4.20
413 418 0.526211 GTGGAAGGGCAATTTCGTCC 59.474 55.000 0.00 0.00 33.22 4.79
414 419 0.111446 TGGAAGGGCAATTTCGTCCA 59.889 50.000 0.00 0.00 38.76 4.02
415 420 1.253100 GGAAGGGCAATTTCGTCCAA 58.747 50.000 0.00 0.00 32.92 3.53
416 421 1.616374 GGAAGGGCAATTTCGTCCAAA 59.384 47.619 0.00 0.00 32.92 3.28
417 422 2.036604 GGAAGGGCAATTTCGTCCAAAA 59.963 45.455 0.00 0.00 32.92 2.44
418 423 3.306710 GGAAGGGCAATTTCGTCCAAAAT 60.307 43.478 0.00 0.00 32.92 1.82
419 424 3.592898 AGGGCAATTTCGTCCAAAATC 57.407 42.857 0.00 0.00 30.91 2.17
420 425 2.896685 AGGGCAATTTCGTCCAAAATCA 59.103 40.909 0.00 0.00 30.91 2.57
421 426 2.993220 GGGCAATTTCGTCCAAAATCAC 59.007 45.455 0.00 0.00 0.00 3.06
422 427 3.306019 GGGCAATTTCGTCCAAAATCACT 60.306 43.478 0.00 0.00 0.00 3.41
423 428 3.920412 GGCAATTTCGTCCAAAATCACTC 59.080 43.478 0.00 0.00 0.00 3.51
424 429 3.603770 GCAATTTCGTCCAAAATCACTCG 59.396 43.478 0.00 0.00 0.00 4.18
425 430 2.961522 TTTCGTCCAAAATCACTCGC 57.038 45.000 0.00 0.00 0.00 5.03
426 431 0.787787 TTCGTCCAAAATCACTCGCG 59.212 50.000 0.00 0.00 0.00 5.87
427 432 1.011968 TCGTCCAAAATCACTCGCGG 61.012 55.000 6.13 0.00 0.00 6.46
428 433 1.011968 CGTCCAAAATCACTCGCGGA 61.012 55.000 6.13 0.00 0.00 5.54
429 434 1.153353 GTCCAAAATCACTCGCGGAA 58.847 50.000 6.13 0.00 0.00 4.30
430 435 1.136057 GTCCAAAATCACTCGCGGAAC 60.136 52.381 6.13 0.00 0.00 3.62
445 450 2.838386 GGAACGAGATACGCACTACA 57.162 50.000 0.00 0.00 46.94 2.74
446 451 3.351020 GGAACGAGATACGCACTACAT 57.649 47.619 0.00 0.00 46.94 2.29
447 452 3.043586 GGAACGAGATACGCACTACATG 58.956 50.000 0.00 0.00 46.94 3.21
448 453 3.488721 GGAACGAGATACGCACTACATGT 60.489 47.826 2.69 2.69 46.94 3.21
449 454 3.335786 ACGAGATACGCACTACATGTC 57.664 47.619 0.00 0.00 46.94 3.06
450 455 2.286242 ACGAGATACGCACTACATGTCG 60.286 50.000 0.00 1.68 46.94 4.35
451 456 2.651701 GAGATACGCACTACATGTCGG 58.348 52.381 0.00 0.00 33.73 4.79
452 457 2.289820 GAGATACGCACTACATGTCGGA 59.710 50.000 0.00 0.00 33.73 4.55
453 458 2.686405 AGATACGCACTACATGTCGGAA 59.314 45.455 0.00 0.00 33.73 4.30
454 459 3.318275 AGATACGCACTACATGTCGGAAT 59.682 43.478 0.00 0.00 33.73 3.01
455 460 2.380084 ACGCACTACATGTCGGAATT 57.620 45.000 0.00 0.00 33.73 2.17
456 461 2.695359 ACGCACTACATGTCGGAATTT 58.305 42.857 0.00 0.00 33.73 1.82
457 462 3.071479 ACGCACTACATGTCGGAATTTT 58.929 40.909 0.00 0.00 33.73 1.82
458 463 3.500680 ACGCACTACATGTCGGAATTTTT 59.499 39.130 0.00 0.00 33.73 1.94
459 464 4.691685 ACGCACTACATGTCGGAATTTTTA 59.308 37.500 0.00 0.00 33.73 1.52
460 465 5.019498 CGCACTACATGTCGGAATTTTTAC 58.981 41.667 0.00 0.00 0.00 2.01
461 466 5.019498 GCACTACATGTCGGAATTTTTACG 58.981 41.667 0.00 0.00 0.00 3.18
462 467 5.163933 GCACTACATGTCGGAATTTTTACGA 60.164 40.000 0.00 0.00 0.00 3.43
463 468 6.619018 GCACTACATGTCGGAATTTTTACGAA 60.619 38.462 0.00 0.00 38.46 3.85
464 469 7.292292 CACTACATGTCGGAATTTTTACGAAA 58.708 34.615 0.00 0.00 38.46 3.46
465 470 7.960738 CACTACATGTCGGAATTTTTACGAAAT 59.039 33.333 0.00 0.00 38.46 2.17
466 471 8.508875 ACTACATGTCGGAATTTTTACGAAATT 58.491 29.630 0.00 0.00 38.46 1.82
467 472 9.337091 CTACATGTCGGAATTTTTACGAAATTT 57.663 29.630 0.00 0.00 38.46 1.82
468 473 8.582433 ACATGTCGGAATTTTTACGAAATTTT 57.418 26.923 0.00 0.00 38.46 1.82
469 474 9.036671 ACATGTCGGAATTTTTACGAAATTTTT 57.963 25.926 0.00 0.00 38.46 1.94
473 478 9.455559 GTCGGAATTTTTACGAAATTTTTATGC 57.544 29.630 0.00 0.00 38.46 3.14
474 479 8.366666 TCGGAATTTTTACGAAATTTTTATGCG 58.633 29.630 0.00 0.00 33.21 4.73
475 480 7.159659 CGGAATTTTTACGAAATTTTTATGCGC 59.840 33.333 0.00 0.00 30.68 6.09
476 481 7.952637 GGAATTTTTACGAAATTTTTATGCGCA 59.047 29.630 14.96 14.96 30.68 6.09
477 482 8.634611 AATTTTTACGAAATTTTTATGCGCAC 57.365 26.923 14.90 0.00 0.00 5.34
478 483 6.994868 TTTTACGAAATTTTTATGCGCACT 57.005 29.167 14.90 4.70 0.00 4.40
479 484 8.503486 TTTTTACGAAATTTTTATGCGCACTA 57.497 26.923 14.90 3.54 0.00 2.74
480 485 7.481768 TTTACGAAATTTTTATGCGCACTAC 57.518 32.000 14.90 0.00 0.00 2.73
481 486 5.291293 ACGAAATTTTTATGCGCACTACT 57.709 34.783 14.90 0.00 0.00 2.57
482 487 5.695818 ACGAAATTTTTATGCGCACTACTT 58.304 33.333 14.90 0.00 0.00 2.24
483 488 6.146898 ACGAAATTTTTATGCGCACTACTTT 58.853 32.000 14.90 8.25 0.00 2.66
484 489 6.639279 ACGAAATTTTTATGCGCACTACTTTT 59.361 30.769 14.90 9.04 0.00 2.27
485 490 7.804129 ACGAAATTTTTATGCGCACTACTTTTA 59.196 29.630 14.90 0.00 0.00 1.52
486 491 8.304138 CGAAATTTTTATGCGCACTACTTTTAG 58.696 33.333 14.90 5.80 0.00 1.85
487 492 8.460831 AAATTTTTATGCGCACTACTTTTAGG 57.539 30.769 14.90 0.00 0.00 2.69
488 493 6.804770 TTTTTATGCGCACTACTTTTAGGA 57.195 33.333 14.90 0.00 0.00 2.94
489 494 6.804770 TTTTATGCGCACTACTTTTAGGAA 57.195 33.333 14.90 0.00 0.00 3.36
490 495 5.789710 TTATGCGCACTACTTTTAGGAAC 57.210 39.130 14.90 0.00 0.00 3.62
491 496 2.063266 TGCGCACTACTTTTAGGAACG 58.937 47.619 5.66 0.00 0.00 3.95
492 497 1.392510 GCGCACTACTTTTAGGAACGG 59.607 52.381 0.30 0.00 0.00 4.44
493 498 2.927871 GCGCACTACTTTTAGGAACGGA 60.928 50.000 0.30 0.00 0.00 4.69
494 499 2.921754 CGCACTACTTTTAGGAACGGAG 59.078 50.000 0.00 0.00 0.00 4.63
495 500 3.259902 GCACTACTTTTAGGAACGGAGG 58.740 50.000 0.00 0.00 0.00 4.30
496 501 3.858247 CACTACTTTTAGGAACGGAGGG 58.142 50.000 0.00 0.00 0.00 4.30
497 502 3.512724 CACTACTTTTAGGAACGGAGGGA 59.487 47.826 0.00 0.00 0.00 4.20
498 503 3.768215 ACTACTTTTAGGAACGGAGGGAG 59.232 47.826 0.00 0.00 0.00 4.30
499 504 2.617658 ACTTTTAGGAACGGAGGGAGT 58.382 47.619 0.00 0.00 0.00 3.85
500 505 3.782992 ACTTTTAGGAACGGAGGGAGTA 58.217 45.455 0.00 0.00 0.00 2.59
501 506 4.359996 ACTTTTAGGAACGGAGGGAGTAT 58.640 43.478 0.00 0.00 0.00 2.12
502 507 4.405036 ACTTTTAGGAACGGAGGGAGTATC 59.595 45.833 0.00 0.00 0.00 2.24
503 508 3.675348 TTAGGAACGGAGGGAGTATCA 57.325 47.619 0.00 0.00 36.25 2.15
504 509 2.544844 AGGAACGGAGGGAGTATCAA 57.455 50.000 0.00 0.00 36.25 2.57
505 510 3.047695 AGGAACGGAGGGAGTATCAAT 57.952 47.619 0.00 0.00 36.25 2.57
506 511 3.385115 AGGAACGGAGGGAGTATCAATT 58.615 45.455 0.00 0.00 36.25 2.32
507 512 4.553678 AGGAACGGAGGGAGTATCAATTA 58.446 43.478 0.00 0.00 36.25 1.40
508 513 4.589374 AGGAACGGAGGGAGTATCAATTAG 59.411 45.833 0.00 0.00 36.25 1.73
509 514 4.308265 GAACGGAGGGAGTATCAATTAGC 58.692 47.826 0.00 0.00 36.25 3.09
510 515 3.305720 ACGGAGGGAGTATCAATTAGCA 58.694 45.455 0.00 0.00 36.25 3.49
511 516 3.069729 ACGGAGGGAGTATCAATTAGCAC 59.930 47.826 0.00 0.00 36.25 4.40
512 517 3.069586 CGGAGGGAGTATCAATTAGCACA 59.930 47.826 0.00 0.00 36.25 4.57
513 518 4.381411 GGAGGGAGTATCAATTAGCACAC 58.619 47.826 0.00 0.00 36.25 3.82
514 519 4.101741 GGAGGGAGTATCAATTAGCACACT 59.898 45.833 0.00 0.00 36.25 3.55
515 520 5.396884 GGAGGGAGTATCAATTAGCACACTT 60.397 44.000 0.00 0.00 36.25 3.16
516 521 5.675538 AGGGAGTATCAATTAGCACACTTC 58.324 41.667 0.00 0.00 36.25 3.01
517 522 4.816925 GGGAGTATCAATTAGCACACTTCC 59.183 45.833 0.00 0.00 36.25 3.46
518 523 5.396884 GGGAGTATCAATTAGCACACTTCCT 60.397 44.000 0.00 0.00 36.25 3.36
519 524 6.116126 GGAGTATCAATTAGCACACTTCCTT 58.884 40.000 0.00 0.00 36.25 3.36
520 525 6.599638 GGAGTATCAATTAGCACACTTCCTTT 59.400 38.462 0.00 0.00 36.25 3.11
521 526 7.201652 GGAGTATCAATTAGCACACTTCCTTTC 60.202 40.741 0.00 0.00 36.25 2.62
522 527 7.168219 AGTATCAATTAGCACACTTCCTTTCA 58.832 34.615 0.00 0.00 0.00 2.69
523 528 7.831193 AGTATCAATTAGCACACTTCCTTTCAT 59.169 33.333 0.00 0.00 0.00 2.57
524 529 6.258230 TCAATTAGCACACTTCCTTTCATG 57.742 37.500 0.00 0.00 0.00 3.07
525 530 5.183713 TCAATTAGCACACTTCCTTTCATGG 59.816 40.000 0.00 0.00 0.00 3.66
526 531 2.664402 AGCACACTTCCTTTCATGGT 57.336 45.000 0.00 0.00 0.00 3.55
527 532 2.508526 AGCACACTTCCTTTCATGGTC 58.491 47.619 0.00 0.00 0.00 4.02
528 533 2.158623 AGCACACTTCCTTTCATGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
529 534 2.030805 GCACACTTCCTTTCATGGTCAC 60.031 50.000 0.00 0.00 0.00 3.67
530 535 2.554032 CACACTTCCTTTCATGGTCACC 59.446 50.000 0.00 0.00 0.00 4.02
531 536 2.443255 ACACTTCCTTTCATGGTCACCT 59.557 45.455 0.00 0.00 0.00 4.00
532 537 3.117512 ACACTTCCTTTCATGGTCACCTT 60.118 43.478 0.00 0.00 0.00 3.50
533 538 3.503748 CACTTCCTTTCATGGTCACCTTC 59.496 47.826 0.00 0.00 0.00 3.46
534 539 2.472695 TCCTTTCATGGTCACCTTCG 57.527 50.000 0.00 0.00 0.00 3.79
535 540 1.697432 TCCTTTCATGGTCACCTTCGT 59.303 47.619 0.00 0.00 0.00 3.85
536 541 2.076863 CCTTTCATGGTCACCTTCGTC 58.923 52.381 0.00 0.00 0.00 4.20
537 542 2.076863 CTTTCATGGTCACCTTCGTCC 58.923 52.381 0.00 0.00 0.00 4.79
538 543 1.052617 TTCATGGTCACCTTCGTCCA 58.947 50.000 0.00 0.00 0.00 4.02
539 544 1.275666 TCATGGTCACCTTCGTCCAT 58.724 50.000 0.00 0.00 40.73 3.41
540 545 2.462723 TCATGGTCACCTTCGTCCATA 58.537 47.619 0.00 0.00 38.43 2.74
541 546 2.835156 TCATGGTCACCTTCGTCCATAA 59.165 45.455 0.00 0.00 38.43 1.90
542 547 3.262151 TCATGGTCACCTTCGTCCATAAA 59.738 43.478 0.00 0.00 38.43 1.40
543 548 3.773418 TGGTCACCTTCGTCCATAAAA 57.227 42.857 0.00 0.00 0.00 1.52
544 549 4.295141 TGGTCACCTTCGTCCATAAAAT 57.705 40.909 0.00 0.00 0.00 1.82
545 550 4.658063 TGGTCACCTTCGTCCATAAAATT 58.342 39.130 0.00 0.00 0.00 1.82
546 551 4.698304 TGGTCACCTTCGTCCATAAAATTC 59.302 41.667 0.00 0.00 0.00 2.17
547 552 4.698304 GGTCACCTTCGTCCATAAAATTCA 59.302 41.667 0.00 0.00 0.00 2.57
548 553 5.391629 GGTCACCTTCGTCCATAAAATTCAC 60.392 44.000 0.00 0.00 0.00 3.18
549 554 5.180492 GTCACCTTCGTCCATAAAATTCACA 59.820 40.000 0.00 0.00 0.00 3.58
550 555 5.765677 TCACCTTCGTCCATAAAATTCACAA 59.234 36.000 0.00 0.00 0.00 3.33
551 556 6.432783 TCACCTTCGTCCATAAAATTCACAAT 59.567 34.615 0.00 0.00 0.00 2.71
552 557 6.747280 CACCTTCGTCCATAAAATTCACAATC 59.253 38.462 0.00 0.00 0.00 2.67
553 558 6.432783 ACCTTCGTCCATAAAATTCACAATCA 59.567 34.615 0.00 0.00 0.00 2.57
554 559 6.747280 CCTTCGTCCATAAAATTCACAATCAC 59.253 38.462 0.00 0.00 0.00 3.06
555 560 6.809630 TCGTCCATAAAATTCACAATCACA 57.190 33.333 0.00 0.00 0.00 3.58
556 561 6.607689 TCGTCCATAAAATTCACAATCACAC 58.392 36.000 0.00 0.00 0.00 3.82
557 562 6.429692 TCGTCCATAAAATTCACAATCACACT 59.570 34.615 0.00 0.00 0.00 3.55
558 563 6.742718 CGTCCATAAAATTCACAATCACACTC 59.257 38.462 0.00 0.00 0.00 3.51
559 564 6.742718 GTCCATAAAATTCACAATCACACTCG 59.257 38.462 0.00 0.00 0.00 4.18
560 565 6.429692 TCCATAAAATTCACAATCACACTCGT 59.570 34.615 0.00 0.00 0.00 4.18
561 566 6.742718 CCATAAAATTCACAATCACACTCGTC 59.257 38.462 0.00 0.00 0.00 4.20
562 567 5.749596 AAAATTCACAATCACACTCGTCA 57.250 34.783 0.00 0.00 0.00 4.35
563 568 4.732285 AATTCACAATCACACTCGTCAC 57.268 40.909 0.00 0.00 0.00 3.67
564 569 1.766069 TCACAATCACACTCGTCACG 58.234 50.000 0.00 0.00 0.00 4.35
565 570 1.066454 TCACAATCACACTCGTCACGT 59.934 47.619 0.00 0.00 0.00 4.49
566 571 2.291190 TCACAATCACACTCGTCACGTA 59.709 45.455 0.00 0.00 0.00 3.57
567 572 3.057806 TCACAATCACACTCGTCACGTAT 60.058 43.478 0.00 0.00 0.00 3.06
608 613 2.362397 CCTTAACTAGCCGAGCAGATCA 59.638 50.000 0.00 0.00 0.00 2.92
616 621 2.636893 AGCCGAGCAGATCATTAATCCT 59.363 45.455 0.00 0.00 34.67 3.24
697 703 5.362556 TCTGCAGCAGTGTAAAAGAAATC 57.637 39.130 22.10 0.00 32.61 2.17
737 743 5.726980 TCCATCTGTCAATTTTCCCTTTG 57.273 39.130 0.00 0.00 0.00 2.77
760 766 5.951747 TGGGGAAAAATGACCAAGAATAGAG 59.048 40.000 0.00 0.00 0.00 2.43
815 825 2.365370 CTGCCTGCCTCTCCTCCT 60.365 66.667 0.00 0.00 0.00 3.69
1321 1343 2.276732 TGGTTCTTTGGCTCCTTCTG 57.723 50.000 0.00 0.00 0.00 3.02
1328 1350 1.967319 TTGGCTCCTTCTGTTGTCAC 58.033 50.000 0.00 0.00 0.00 3.67
1329 1351 0.108585 TGGCTCCTTCTGTTGTCACC 59.891 55.000 0.00 0.00 0.00 4.02
1347 1373 0.527113 CCGATGCCTGCATTTTGTGA 59.473 50.000 6.02 0.00 36.70 3.58
1452 1478 6.849305 GGCTGTTATCGGTTTATAATTTCGTG 59.151 38.462 0.00 0.00 0.00 4.35
1489 1515 8.218338 ACTTCTTGATTTGATATGACATCCAC 57.782 34.615 0.00 0.00 0.00 4.02
1712 1751 2.291605 GGAAATGGGGGCACTAGAAACT 60.292 50.000 0.00 0.00 0.00 2.66
1820 1876 3.840078 TGTTGAGTCTCCTGATGATTGGA 59.160 43.478 0.00 0.00 0.00 3.53
1878 1934 2.538333 CGAGGCGATTTTGCATCTTCAG 60.538 50.000 3.26 0.00 43.12 3.02
2039 2107 5.497464 TGGTGTCAAATATCTCTGTTGGA 57.503 39.130 0.00 0.00 0.00 3.53
2142 2210 6.769341 GGCCGGTTCTTAAATCTAAGGATTAA 59.231 38.462 1.90 0.00 40.86 1.40
2160 2228 9.981114 AAGGATTAATTTTCCAAACTTGTACTG 57.019 29.630 9.16 0.00 35.59 2.74
2309 2377 5.700832 GCTCATATTGGTGGATTTGTATCGA 59.299 40.000 0.00 0.00 0.00 3.59
2394 2462 1.009389 CGTCTTGGAGTTCACTCGGC 61.009 60.000 0.83 0.00 43.76 5.54
2482 2550 9.777008 TTAATTTGTGGGTAAATATCTTCCCTT 57.223 29.630 9.45 0.81 40.48 3.95
2494 2562 4.647564 ATCTTCCCTTTCAGCAGAAGAA 57.352 40.909 5.50 0.00 45.62 2.52
2495 2563 4.437682 TCTTCCCTTTCAGCAGAAGAAA 57.562 40.909 0.00 0.00 41.21 2.52
2496 2564 4.990526 TCTTCCCTTTCAGCAGAAGAAAT 58.009 39.130 0.00 0.00 41.21 2.17
2498 2566 6.542821 TCTTCCCTTTCAGCAGAAGAAATAA 58.457 36.000 0.00 0.00 41.21 1.40
2499 2567 7.177878 TCTTCCCTTTCAGCAGAAGAAATAAT 58.822 34.615 0.00 0.00 41.21 1.28
2500 2568 6.764308 TCCCTTTCAGCAGAAGAAATAATG 57.236 37.500 0.00 0.00 34.75 1.90
2501 2569 6.484288 TCCCTTTCAGCAGAAGAAATAATGA 58.516 36.000 0.00 0.00 34.75 2.57
2502 2570 7.121382 TCCCTTTCAGCAGAAGAAATAATGAT 58.879 34.615 0.00 0.00 34.75 2.45
2503 2571 7.284034 TCCCTTTCAGCAGAAGAAATAATGATC 59.716 37.037 0.00 0.00 34.75 2.92
2509 2577 7.825761 TCAGCAGAAGAAATAATGATCTGTTCA 59.174 33.333 0.00 0.00 39.68 3.18
2514 2582 9.730705 AGAAGAAATAATGATCTGTTCAGTTCA 57.269 29.630 13.56 13.56 37.89 3.18
2516 2584 7.983307 AGAAATAATGATCTGTTCAGTTCAGC 58.017 34.615 15.55 5.07 37.89 4.26
2528 2596 3.239449 TCAGTTCAGCCTCTAGGTTTCA 58.761 45.455 0.00 0.00 37.57 2.69
2529 2597 3.646162 TCAGTTCAGCCTCTAGGTTTCAA 59.354 43.478 0.00 0.00 37.57 2.69
2530 2598 3.748568 CAGTTCAGCCTCTAGGTTTCAAC 59.251 47.826 0.00 0.00 37.57 3.18
2531 2599 3.648545 AGTTCAGCCTCTAGGTTTCAACT 59.351 43.478 0.00 0.30 37.57 3.16
2756 2824 3.815401 GTCCCCTGAAATATCGGATGTTG 59.185 47.826 0.00 0.00 33.44 3.33
2757 2825 2.554032 CCCCTGAAATATCGGATGTTGC 59.446 50.000 0.00 0.00 33.44 4.17
2758 2826 3.480470 CCCTGAAATATCGGATGTTGCT 58.520 45.455 6.95 0.00 33.44 3.91
2801 2869 2.421424 GTGGCATTCTGGACAGATGTTC 59.579 50.000 2.42 0.00 37.29 3.18
2945 3017 5.673514 TGCTATGAGCTGATCACATGTTAA 58.326 37.500 0.00 0.00 42.97 2.01
2957 3029 9.467258 CTGATCACATGTTAAAACAGTCAAAAT 57.533 29.630 0.00 0.00 43.04 1.82
2984 3056 3.370103 CCTCCCGCTGGTTTTCAACTATA 60.370 47.826 0.00 0.00 0.00 1.31
2988 3060 4.035208 CCCGCTGGTTTTCAACTATATGTC 59.965 45.833 0.00 0.00 0.00 3.06
2989 3061 4.634004 CCGCTGGTTTTCAACTATATGTCA 59.366 41.667 0.00 0.00 0.00 3.58
2990 3062 5.296780 CCGCTGGTTTTCAACTATATGTCAT 59.703 40.000 0.00 0.00 0.00 3.06
2991 3063 6.422223 CGCTGGTTTTCAACTATATGTCATC 58.578 40.000 0.00 0.00 0.00 2.92
2992 3064 6.422223 GCTGGTTTTCAACTATATGTCATCG 58.578 40.000 0.00 0.00 0.00 3.84
2993 3065 6.358118 TGGTTTTCAACTATATGTCATCGC 57.642 37.500 0.00 0.00 0.00 4.58
3014 3089 4.500035 CGCTTCTCCTTTCTACATAGGACC 60.500 50.000 0.00 0.00 35.66 4.46
3362 3437 1.202359 GCTTTTCGTGGCAAGAAACCA 60.202 47.619 24.72 12.76 37.33 3.67
3455 3530 6.374417 TTGGGCTTCTATAGTTCTCTTGTT 57.626 37.500 0.00 0.00 0.00 2.83
3620 3695 1.443802 CGAGAGGAGGAAAGTTTGGC 58.556 55.000 0.00 0.00 0.00 4.52
3703 3778 3.580022 TCTCTGTTCTCATTCAAGAGCCA 59.420 43.478 0.00 0.00 35.59 4.75
3716 3797 1.273759 AGAGCCAGAGCAATCTGTGA 58.726 50.000 4.68 0.00 43.56 3.58
3730 3811 1.025041 CTGTGAGACCGATCCGATCA 58.975 55.000 9.07 0.00 0.00 2.92
3785 3885 4.761975 TGTTGGAACGAGTACAAAGAACT 58.238 39.130 0.00 0.00 0.00 3.01
3794 3894 7.178712 ACGAGTACAAAGAACTTTCAATCTG 57.821 36.000 0.00 0.00 0.00 2.90
3813 3913 7.445096 TCAATCTGAAAGCTCTGTTGAAACATA 59.555 33.333 0.00 0.00 38.41 2.29
3824 3924 4.793071 TGTTGAAACATATCAAAGGTGCG 58.207 39.130 0.00 0.00 40.76 5.34
3840 3940 2.434884 CGGATCGGCAGCACAACT 60.435 61.111 0.00 0.00 0.00 3.16
3841 3941 2.456119 CGGATCGGCAGCACAACTC 61.456 63.158 0.00 0.00 0.00 3.01
3845 3945 3.357079 CGGCAGCACAACTCCCAC 61.357 66.667 0.00 0.00 0.00 4.61
3846 3946 2.113986 GGCAGCACAACTCCCACT 59.886 61.111 0.00 0.00 0.00 4.00
3847 3947 1.374947 GGCAGCACAACTCCCACTA 59.625 57.895 0.00 0.00 0.00 2.74
3861 3961 9.901172 ACAACTCCCACTATATTACCTAAAAAG 57.099 33.333 0.00 0.00 0.00 2.27
3984 4084 4.444536 ACATCACAAAACTTTGCAGCAAT 58.555 34.783 9.12 0.00 41.79 3.56
3985 4085 5.599732 ACATCACAAAACTTTGCAGCAATA 58.400 33.333 9.12 0.00 41.79 1.90
3986 4086 6.225318 ACATCACAAAACTTTGCAGCAATAT 58.775 32.000 9.12 0.00 41.79 1.28
3987 4087 7.377398 ACATCACAAAACTTTGCAGCAATATA 58.623 30.769 9.12 0.00 41.79 0.86
3988 4088 7.543172 ACATCACAAAACTTTGCAGCAATATAG 59.457 33.333 9.12 6.20 41.79 1.31
3989 4089 7.213216 TCACAAAACTTTGCAGCAATATAGA 57.787 32.000 9.12 0.00 41.79 1.98
3990 4090 7.083858 TCACAAAACTTTGCAGCAATATAGAC 58.916 34.615 9.12 0.00 41.79 2.59
3991 4091 6.862608 CACAAAACTTTGCAGCAATATAGACA 59.137 34.615 9.12 0.00 41.79 3.41
3992 4092 7.381948 CACAAAACTTTGCAGCAATATAGACAA 59.618 33.333 9.12 0.00 41.79 3.18
4014 4114 9.296400 GACAAGAGAGAACTCAATAGACAATAC 57.704 37.037 4.64 0.00 44.79 1.89
4041 4141 5.554437 TTACAACTACTGGTCCACATTCA 57.446 39.130 0.00 0.00 0.00 2.57
4052 4152 1.704628 TCCACATTCAGGGTCACACAT 59.295 47.619 0.00 0.00 0.00 3.21
4064 4164 6.767423 TCAGGGTCACACATACATAAATGATG 59.233 38.462 0.00 0.00 41.79 3.07
4124 4224 5.725110 AGAGATTGTGTAAACATGATCGC 57.275 39.130 0.00 0.00 0.00 4.58
4141 4241 4.269123 TGATCGCGCATTATTTTTAGACGT 59.731 37.500 8.75 0.00 0.00 4.34
4206 4306 3.317406 TCCACTGCATATATGGTCCACT 58.683 45.455 14.51 0.00 34.89 4.00
4235 4335 3.131223 TCATCTCAGAACATCCGGAAGTC 59.869 47.826 13.58 8.49 0.00 3.01
4242 4342 1.479709 ACATCCGGAAGTCTCCTCAG 58.520 55.000 9.01 0.00 39.93 3.35
4284 4384 4.024302 GCGTTTTGGCCTTATATCCTACAC 60.024 45.833 3.32 0.00 0.00 2.90
4316 4416 2.439409 TGAAATGTCATGCACCTGGAG 58.561 47.619 0.00 0.00 0.00 3.86
4319 4419 2.119801 ATGTCATGCACCTGGAGTTC 57.880 50.000 0.00 0.00 0.00 3.01
4320 4420 1.059098 TGTCATGCACCTGGAGTTCT 58.941 50.000 0.00 0.00 0.00 3.01
4322 4422 2.637382 TGTCATGCACCTGGAGTTCTAA 59.363 45.455 0.00 0.00 0.00 2.10
4323 4423 3.072330 TGTCATGCACCTGGAGTTCTAAA 59.928 43.478 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.889186 GTTGAAGGAGGCAAAGGCGA 60.889 55.000 0.00 0.00 42.47 5.54
63 64 1.172180 TGTTGAAGGAGGCAAAGGCG 61.172 55.000 0.00 0.00 42.47 5.52
89 90 2.424684 AGAGGTGAGGAGGAAGGTTT 57.575 50.000 0.00 0.00 0.00 3.27
140 141 2.262915 CGAGAGGTGTGGTGGAGC 59.737 66.667 0.00 0.00 0.00 4.70
158 159 0.946221 GCTGTCCAATAGATCGCGGG 60.946 60.000 6.13 0.00 0.00 6.13
203 207 0.547954 AACACTTCCTCCCCCTCTCC 60.548 60.000 0.00 0.00 0.00 3.71
211 215 1.376037 CTCCCGCAACACTTCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
262 266 2.203998 CCCACCACCTGACCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
286 290 4.292178 GCTCGCCTCGATCCCCAG 62.292 72.222 0.00 0.00 34.61 4.45
313 318 1.562575 TTTCTCGTCGCCGCTTTTCC 61.563 55.000 0.00 0.00 0.00 3.13
314 319 0.179248 CTTTCTCGTCGCCGCTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
315 320 0.599204 TCTTTCTCGTCGCCGCTTTT 60.599 50.000 0.00 0.00 0.00 2.27
316 321 1.006571 TCTTTCTCGTCGCCGCTTT 60.007 52.632 0.00 0.00 0.00 3.51
317 322 1.444553 CTCTTTCTCGTCGCCGCTT 60.445 57.895 0.00 0.00 0.00 4.68
318 323 1.658686 ATCTCTTTCTCGTCGCCGCT 61.659 55.000 0.00 0.00 0.00 5.52
319 324 0.029035 TATCTCTTTCTCGTCGCCGC 59.971 55.000 0.00 0.00 0.00 6.53
320 325 2.376956 CTTATCTCTTTCTCGTCGCCG 58.623 52.381 0.00 0.00 0.00 6.46
321 326 2.544069 CCCTTATCTCTTTCTCGTCGCC 60.544 54.545 0.00 0.00 0.00 5.54
322 327 2.544069 CCCCTTATCTCTTTCTCGTCGC 60.544 54.545 0.00 0.00 0.00 5.19
323 328 2.034812 CCCCCTTATCTCTTTCTCGTCG 59.965 54.545 0.00 0.00 0.00 5.12
324 329 3.737032 CCCCCTTATCTCTTTCTCGTC 57.263 52.381 0.00 0.00 0.00 4.20
348 353 3.490837 ATAGCCCCATCGCCTCCCT 62.491 63.158 0.00 0.00 0.00 4.20
349 354 2.930562 ATAGCCCCATCGCCTCCC 60.931 66.667 0.00 0.00 0.00 4.30
350 355 2.348998 CATAGCCCCATCGCCTCC 59.651 66.667 0.00 0.00 0.00 4.30
351 356 2.359230 GCATAGCCCCATCGCCTC 60.359 66.667 0.00 0.00 0.00 4.70
352 357 4.320456 CGCATAGCCCCATCGCCT 62.320 66.667 0.00 0.00 0.00 5.52
354 359 4.626081 ACCGCATAGCCCCATCGC 62.626 66.667 0.00 0.00 0.00 4.58
355 360 2.666190 CACCGCATAGCCCCATCG 60.666 66.667 0.00 0.00 0.00 3.84
356 361 2.281761 CCACCGCATAGCCCCATC 60.282 66.667 0.00 0.00 0.00 3.51
357 362 3.889692 CCCACCGCATAGCCCCAT 61.890 66.667 0.00 0.00 0.00 4.00
360 365 3.165685 TACCCCACCGCATAGCCC 61.166 66.667 0.00 0.00 0.00 5.19
361 366 2.426023 CTACCCCACCGCATAGCC 59.574 66.667 0.00 0.00 0.00 3.93
362 367 2.426023 CCTACCCCACCGCATAGC 59.574 66.667 0.00 0.00 0.00 2.97
363 368 3.148084 CCCTACCCCACCGCATAG 58.852 66.667 0.00 0.00 0.00 2.23
364 369 3.165685 GCCCTACCCCACCGCATA 61.166 66.667 0.00 0.00 0.00 3.14
374 379 4.410400 AACAGCCAGCGCCCTACC 62.410 66.667 2.29 0.00 34.57 3.18
375 380 2.820037 GAACAGCCAGCGCCCTAC 60.820 66.667 2.29 0.00 34.57 3.18
376 381 4.451150 CGAACAGCCAGCGCCCTA 62.451 66.667 2.29 0.00 34.57 3.53
381 386 4.680237 TCCACCGAACAGCCAGCG 62.680 66.667 0.00 0.00 0.00 5.18
382 387 2.281484 TTCCACCGAACAGCCAGC 60.281 61.111 0.00 0.00 0.00 4.85
383 388 1.672356 CCTTCCACCGAACAGCCAG 60.672 63.158 0.00 0.00 0.00 4.85
384 389 2.429930 CCTTCCACCGAACAGCCA 59.570 61.111 0.00 0.00 0.00 4.75
385 390 2.359975 CCCTTCCACCGAACAGCC 60.360 66.667 0.00 0.00 0.00 4.85
386 391 3.056328 GCCCTTCCACCGAACAGC 61.056 66.667 0.00 0.00 0.00 4.40
387 392 0.609131 ATTGCCCTTCCACCGAACAG 60.609 55.000 0.00 0.00 0.00 3.16
388 393 0.178975 AATTGCCCTTCCACCGAACA 60.179 50.000 0.00 0.00 0.00 3.18
389 394 0.966179 AAATTGCCCTTCCACCGAAC 59.034 50.000 0.00 0.00 0.00 3.95
390 395 1.253100 GAAATTGCCCTTCCACCGAA 58.747 50.000 0.00 0.00 0.00 4.30
391 396 0.958382 CGAAATTGCCCTTCCACCGA 60.958 55.000 0.00 0.00 0.00 4.69
392 397 1.241315 ACGAAATTGCCCTTCCACCG 61.241 55.000 0.00 0.00 0.00 4.94
393 398 0.526211 GACGAAATTGCCCTTCCACC 59.474 55.000 0.00 0.00 0.00 4.61
394 399 0.526211 GGACGAAATTGCCCTTCCAC 59.474 55.000 0.00 0.00 0.00 4.02
395 400 0.111446 TGGACGAAATTGCCCTTCCA 59.889 50.000 0.00 0.00 0.00 3.53
396 401 1.253100 TTGGACGAAATTGCCCTTCC 58.747 50.000 0.00 0.00 0.00 3.46
397 402 3.378911 TTTTGGACGAAATTGCCCTTC 57.621 42.857 0.00 0.00 0.00 3.46
398 403 3.323403 TGATTTTGGACGAAATTGCCCTT 59.677 39.130 0.00 0.00 29.75 3.95
399 404 2.896685 TGATTTTGGACGAAATTGCCCT 59.103 40.909 0.00 0.00 29.75 5.19
400 405 2.993220 GTGATTTTGGACGAAATTGCCC 59.007 45.455 0.00 0.00 29.75 5.36
401 406 3.913089 AGTGATTTTGGACGAAATTGCC 58.087 40.909 0.00 0.00 29.75 4.52
402 407 3.603770 CGAGTGATTTTGGACGAAATTGC 59.396 43.478 0.00 0.00 29.75 3.56
403 408 3.603770 GCGAGTGATTTTGGACGAAATTG 59.396 43.478 0.00 0.00 29.75 2.32
404 409 3.666902 CGCGAGTGATTTTGGACGAAATT 60.667 43.478 0.00 0.00 29.75 1.82
405 410 2.159707 CGCGAGTGATTTTGGACGAAAT 60.160 45.455 0.00 0.00 32.16 2.17
406 411 1.193650 CGCGAGTGATTTTGGACGAAA 59.806 47.619 0.00 0.00 0.00 3.46
407 412 0.787787 CGCGAGTGATTTTGGACGAA 59.212 50.000 0.00 0.00 0.00 3.85
408 413 1.011968 CCGCGAGTGATTTTGGACGA 61.012 55.000 8.23 0.00 0.00 4.20
409 414 1.011968 TCCGCGAGTGATTTTGGACG 61.012 55.000 8.23 0.00 0.00 4.79
410 415 1.136057 GTTCCGCGAGTGATTTTGGAC 60.136 52.381 8.23 0.00 0.00 4.02
411 416 1.153353 GTTCCGCGAGTGATTTTGGA 58.847 50.000 8.23 0.00 0.00 3.53
412 417 0.179225 CGTTCCGCGAGTGATTTTGG 60.179 55.000 8.23 0.00 44.77 3.28
413 418 0.787787 TCGTTCCGCGAGTGATTTTG 59.212 50.000 8.23 0.00 45.68 2.44
414 419 3.204505 TCGTTCCGCGAGTGATTTT 57.795 47.368 8.23 0.00 45.68 1.82
415 420 4.979204 TCGTTCCGCGAGTGATTT 57.021 50.000 8.23 0.00 45.68 2.17
424 429 0.028505 TAGTGCGTATCTCGTTCCGC 59.971 55.000 0.00 0.00 45.92 5.54
425 430 1.063027 TGTAGTGCGTATCTCGTTCCG 59.937 52.381 0.00 0.00 42.13 4.30
426 431 2.838386 TGTAGTGCGTATCTCGTTCC 57.162 50.000 0.00 0.00 42.13 3.62
427 432 3.692576 ACATGTAGTGCGTATCTCGTTC 58.307 45.455 0.00 0.00 42.13 3.95
428 433 3.692576 GACATGTAGTGCGTATCTCGTT 58.307 45.455 0.00 0.00 42.13 3.85
429 434 2.286242 CGACATGTAGTGCGTATCTCGT 60.286 50.000 0.00 0.00 42.13 4.18
430 435 2.299170 CGACATGTAGTGCGTATCTCG 58.701 52.381 0.00 0.00 43.12 4.04
431 436 2.289820 TCCGACATGTAGTGCGTATCTC 59.710 50.000 0.00 0.00 0.00 2.75
432 437 2.294979 TCCGACATGTAGTGCGTATCT 58.705 47.619 0.00 0.00 0.00 1.98
433 438 2.768833 TCCGACATGTAGTGCGTATC 57.231 50.000 0.00 0.00 0.00 2.24
434 439 3.728076 ATTCCGACATGTAGTGCGTAT 57.272 42.857 0.00 0.00 0.00 3.06
435 440 3.513680 AATTCCGACATGTAGTGCGTA 57.486 42.857 0.00 0.00 0.00 4.42
436 441 2.380084 AATTCCGACATGTAGTGCGT 57.620 45.000 0.00 0.00 0.00 5.24
437 442 3.740044 AAAATTCCGACATGTAGTGCG 57.260 42.857 0.00 0.00 0.00 5.34
438 443 5.019498 CGTAAAAATTCCGACATGTAGTGC 58.981 41.667 0.00 0.00 0.00 4.40
439 444 6.397831 TCGTAAAAATTCCGACATGTAGTG 57.602 37.500 0.00 0.00 0.00 2.74
440 445 7.424227 TTTCGTAAAAATTCCGACATGTAGT 57.576 32.000 0.00 0.00 0.00 2.73
441 446 8.889849 AATTTCGTAAAAATTCCGACATGTAG 57.110 30.769 0.00 0.00 0.00 2.74
442 447 9.680315 AAAATTTCGTAAAAATTCCGACATGTA 57.320 25.926 0.00 0.00 0.00 2.29
443 448 8.582433 AAAATTTCGTAAAAATTCCGACATGT 57.418 26.923 0.00 0.00 0.00 3.21
447 452 9.455559 GCATAAAAATTTCGTAAAAATTCCGAC 57.544 29.630 0.00 0.00 0.00 4.79
448 453 8.366666 CGCATAAAAATTTCGTAAAAATTCCGA 58.633 29.630 0.00 0.00 0.00 4.55
449 454 7.159659 GCGCATAAAAATTTCGTAAAAATTCCG 59.840 33.333 0.30 0.00 0.00 4.30
450 455 7.952637 TGCGCATAAAAATTTCGTAAAAATTCC 59.047 29.630 5.66 0.00 0.00 3.01
451 456 8.763124 GTGCGCATAAAAATTTCGTAAAAATTC 58.237 29.630 15.91 0.00 0.00 2.17
452 457 8.491950 AGTGCGCATAAAAATTTCGTAAAAATT 58.508 25.926 15.91 0.00 0.00 1.82
453 458 8.013236 AGTGCGCATAAAAATTTCGTAAAAAT 57.987 26.923 15.91 0.00 0.00 1.82
454 459 7.396190 AGTGCGCATAAAAATTTCGTAAAAA 57.604 28.000 15.91 0.00 0.00 1.94
455 460 6.994868 AGTGCGCATAAAAATTTCGTAAAA 57.005 29.167 15.91 0.00 0.00 1.52
456 461 7.299586 AGTAGTGCGCATAAAAATTTCGTAAA 58.700 30.769 15.91 0.00 0.00 2.01
457 462 6.833839 AGTAGTGCGCATAAAAATTTCGTAA 58.166 32.000 15.91 0.00 0.00 3.18
458 463 6.411630 AGTAGTGCGCATAAAAATTTCGTA 57.588 33.333 15.91 0.00 0.00 3.43
459 464 5.291293 AGTAGTGCGCATAAAAATTTCGT 57.709 34.783 15.91 0.00 0.00 3.85
460 465 6.611380 AAAGTAGTGCGCATAAAAATTTCG 57.389 33.333 15.91 0.00 0.00 3.46
461 466 8.583765 CCTAAAAGTAGTGCGCATAAAAATTTC 58.416 33.333 15.91 0.00 0.00 2.17
462 467 8.301002 TCCTAAAAGTAGTGCGCATAAAAATTT 58.699 29.630 15.91 13.53 0.00 1.82
463 468 7.822658 TCCTAAAAGTAGTGCGCATAAAAATT 58.177 30.769 15.91 8.47 0.00 1.82
464 469 7.385778 TCCTAAAAGTAGTGCGCATAAAAAT 57.614 32.000 15.91 0.03 0.00 1.82
465 470 6.804770 TCCTAAAAGTAGTGCGCATAAAAA 57.195 33.333 15.91 0.00 0.00 1.94
466 471 6.604930 GTTCCTAAAAGTAGTGCGCATAAAA 58.395 36.000 15.91 0.00 0.00 1.52
467 472 5.163933 CGTTCCTAAAAGTAGTGCGCATAAA 60.164 40.000 15.91 0.00 0.00 1.40
468 473 4.327898 CGTTCCTAAAAGTAGTGCGCATAA 59.672 41.667 15.91 0.84 0.00 1.90
469 474 3.861113 CGTTCCTAAAAGTAGTGCGCATA 59.139 43.478 15.91 4.23 0.00 3.14
470 475 2.671396 CGTTCCTAAAAGTAGTGCGCAT 59.329 45.455 15.91 5.37 0.00 4.73
471 476 2.063266 CGTTCCTAAAAGTAGTGCGCA 58.937 47.619 5.66 5.66 0.00 6.09
472 477 1.392510 CCGTTCCTAAAAGTAGTGCGC 59.607 52.381 0.00 0.00 0.00 6.09
473 478 2.921754 CTCCGTTCCTAAAAGTAGTGCG 59.078 50.000 0.00 0.00 0.00 5.34
474 479 3.259902 CCTCCGTTCCTAAAAGTAGTGC 58.740 50.000 0.00 0.00 0.00 4.40
475 480 3.512724 TCCCTCCGTTCCTAAAAGTAGTG 59.487 47.826 0.00 0.00 0.00 2.74
476 481 3.768215 CTCCCTCCGTTCCTAAAAGTAGT 59.232 47.826 0.00 0.00 0.00 2.73
477 482 3.768215 ACTCCCTCCGTTCCTAAAAGTAG 59.232 47.826 0.00 0.00 0.00 2.57
478 483 3.782992 ACTCCCTCCGTTCCTAAAAGTA 58.217 45.455 0.00 0.00 0.00 2.24
479 484 2.617658 ACTCCCTCCGTTCCTAAAAGT 58.382 47.619 0.00 0.00 0.00 2.66
480 485 4.404715 TGATACTCCCTCCGTTCCTAAAAG 59.595 45.833 0.00 0.00 0.00 2.27
481 486 4.355549 TGATACTCCCTCCGTTCCTAAAA 58.644 43.478 0.00 0.00 0.00 1.52
482 487 3.985127 TGATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
483 488 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
484 489 3.675348 TTGATACTCCCTCCGTTCCTA 57.325 47.619 0.00 0.00 0.00 2.94
485 490 2.544844 TTGATACTCCCTCCGTTCCT 57.455 50.000 0.00 0.00 0.00 3.36
486 491 3.840124 AATTGATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
487 492 4.202223 TGCTAATTGATACTCCCTCCGTTC 60.202 45.833 0.00 0.00 0.00 3.95
488 493 3.709653 TGCTAATTGATACTCCCTCCGTT 59.290 43.478 0.00 0.00 0.00 4.44
489 494 3.069729 GTGCTAATTGATACTCCCTCCGT 59.930 47.826 0.00 0.00 0.00 4.69
490 495 3.069586 TGTGCTAATTGATACTCCCTCCG 59.930 47.826 0.00 0.00 0.00 4.63
491 496 4.101741 AGTGTGCTAATTGATACTCCCTCC 59.898 45.833 0.00 0.00 0.00 4.30
492 497 5.283457 AGTGTGCTAATTGATACTCCCTC 57.717 43.478 0.00 0.00 0.00 4.30
493 498 5.396884 GGAAGTGTGCTAATTGATACTCCCT 60.397 44.000 0.00 0.00 0.00 4.20
494 499 4.816925 GGAAGTGTGCTAATTGATACTCCC 59.183 45.833 0.00 0.00 0.00 4.30
495 500 5.675538 AGGAAGTGTGCTAATTGATACTCC 58.324 41.667 0.00 0.00 0.00 3.85
496 501 7.334421 TGAAAGGAAGTGTGCTAATTGATACTC 59.666 37.037 0.00 0.00 0.00 2.59
497 502 7.168219 TGAAAGGAAGTGTGCTAATTGATACT 58.832 34.615 0.00 0.00 0.00 2.12
498 503 7.377766 TGAAAGGAAGTGTGCTAATTGATAC 57.622 36.000 0.00 0.00 0.00 2.24
499 504 7.067372 CCATGAAAGGAAGTGTGCTAATTGATA 59.933 37.037 0.00 0.00 0.00 2.15
500 505 6.127535 CCATGAAAGGAAGTGTGCTAATTGAT 60.128 38.462 0.00 0.00 0.00 2.57
501 506 5.183713 CCATGAAAGGAAGTGTGCTAATTGA 59.816 40.000 0.00 0.00 0.00 2.57
502 507 5.047802 ACCATGAAAGGAAGTGTGCTAATTG 60.048 40.000 0.00 0.00 0.00 2.32
503 508 5.079643 ACCATGAAAGGAAGTGTGCTAATT 58.920 37.500 0.00 0.00 0.00 1.40
504 509 4.666512 ACCATGAAAGGAAGTGTGCTAAT 58.333 39.130 0.00 0.00 0.00 1.73
505 510 4.072131 GACCATGAAAGGAAGTGTGCTAA 58.928 43.478 0.00 0.00 0.00 3.09
506 511 3.072330 TGACCATGAAAGGAAGTGTGCTA 59.928 43.478 0.00 0.00 0.00 3.49
507 512 2.158623 TGACCATGAAAGGAAGTGTGCT 60.159 45.455 0.00 0.00 0.00 4.40
508 513 2.030805 GTGACCATGAAAGGAAGTGTGC 60.031 50.000 0.00 0.00 0.00 4.57
509 514 2.554032 GGTGACCATGAAAGGAAGTGTG 59.446 50.000 0.00 0.00 0.00 3.82
510 515 2.443255 AGGTGACCATGAAAGGAAGTGT 59.557 45.455 3.63 0.00 0.00 3.55
511 516 3.146104 AGGTGACCATGAAAGGAAGTG 57.854 47.619 3.63 0.00 0.00 3.16
512 517 3.756117 GAAGGTGACCATGAAAGGAAGT 58.244 45.455 3.63 0.00 0.00 3.01
513 518 2.744202 CGAAGGTGACCATGAAAGGAAG 59.256 50.000 3.63 0.00 0.00 3.46
514 519 2.105821 ACGAAGGTGACCATGAAAGGAA 59.894 45.455 3.63 0.00 0.00 3.36
515 520 1.697432 ACGAAGGTGACCATGAAAGGA 59.303 47.619 3.63 0.00 0.00 3.36
516 521 2.076863 GACGAAGGTGACCATGAAAGG 58.923 52.381 3.63 0.00 0.00 3.11
517 522 2.076863 GGACGAAGGTGACCATGAAAG 58.923 52.381 3.63 0.00 0.00 2.62
518 523 1.418264 TGGACGAAGGTGACCATGAAA 59.582 47.619 3.63 0.00 0.00 2.69
519 524 1.052617 TGGACGAAGGTGACCATGAA 58.947 50.000 3.63 0.00 0.00 2.57
520 525 1.275666 ATGGACGAAGGTGACCATGA 58.724 50.000 3.63 0.00 40.91 3.07
521 526 2.979814 TATGGACGAAGGTGACCATG 57.020 50.000 3.63 0.00 42.16 3.66
522 527 3.992943 TTTATGGACGAAGGTGACCAT 57.007 42.857 3.63 0.00 44.03 3.55
523 528 3.773418 TTTTATGGACGAAGGTGACCA 57.227 42.857 3.63 0.00 36.83 4.02
524 529 4.698304 TGAATTTTATGGACGAAGGTGACC 59.302 41.667 0.00 0.00 0.00 4.02
525 530 5.180492 TGTGAATTTTATGGACGAAGGTGAC 59.820 40.000 0.00 0.00 0.00 3.67
526 531 5.309638 TGTGAATTTTATGGACGAAGGTGA 58.690 37.500 0.00 0.00 0.00 4.02
527 532 5.621197 TGTGAATTTTATGGACGAAGGTG 57.379 39.130 0.00 0.00 0.00 4.00
528 533 6.432783 TGATTGTGAATTTTATGGACGAAGGT 59.567 34.615 0.00 0.00 0.00 3.50
529 534 6.747280 GTGATTGTGAATTTTATGGACGAAGG 59.253 38.462 0.00 0.00 0.00 3.46
530 535 7.271223 GTGTGATTGTGAATTTTATGGACGAAG 59.729 37.037 0.00 0.00 0.00 3.79
531 536 7.040755 AGTGTGATTGTGAATTTTATGGACGAA 60.041 33.333 0.00 0.00 0.00 3.85
532 537 6.429692 AGTGTGATTGTGAATTTTATGGACGA 59.570 34.615 0.00 0.00 0.00 4.20
533 538 6.611381 AGTGTGATTGTGAATTTTATGGACG 58.389 36.000 0.00 0.00 0.00 4.79
534 539 6.742718 CGAGTGTGATTGTGAATTTTATGGAC 59.257 38.462 0.00 0.00 0.00 4.02
535 540 6.429692 ACGAGTGTGATTGTGAATTTTATGGA 59.570 34.615 0.00 0.00 0.00 3.41
536 541 6.611381 ACGAGTGTGATTGTGAATTTTATGG 58.389 36.000 0.00 0.00 0.00 2.74
537 542 7.269084 GTGACGAGTGTGATTGTGAATTTTATG 59.731 37.037 0.00 0.00 0.00 1.90
538 543 7.298122 GTGACGAGTGTGATTGTGAATTTTAT 58.702 34.615 0.00 0.00 0.00 1.40
539 544 6.563196 CGTGACGAGTGTGATTGTGAATTTTA 60.563 38.462 0.00 0.00 0.00 1.52
540 545 5.510671 GTGACGAGTGTGATTGTGAATTTT 58.489 37.500 0.00 0.00 0.00 1.82
541 546 4.318760 CGTGACGAGTGTGATTGTGAATTT 60.319 41.667 0.00 0.00 0.00 1.82
542 547 3.184379 CGTGACGAGTGTGATTGTGAATT 59.816 43.478 0.00 0.00 0.00 2.17
543 548 2.731451 CGTGACGAGTGTGATTGTGAAT 59.269 45.455 0.00 0.00 0.00 2.57
544 549 2.124122 CGTGACGAGTGTGATTGTGAA 58.876 47.619 0.00 0.00 0.00 3.18
545 550 1.066454 ACGTGACGAGTGTGATTGTGA 59.934 47.619 13.70 0.00 0.00 3.58
546 551 1.487482 ACGTGACGAGTGTGATTGTG 58.513 50.000 13.70 0.00 0.00 3.33
547 552 3.057806 TGATACGTGACGAGTGTGATTGT 60.058 43.478 13.70 0.00 0.00 2.71
548 553 3.300853 GTGATACGTGACGAGTGTGATTG 59.699 47.826 13.70 0.00 0.00 2.67
549 554 3.190744 AGTGATACGTGACGAGTGTGATT 59.809 43.478 13.70 0.00 0.00 2.57
550 555 2.747989 AGTGATACGTGACGAGTGTGAT 59.252 45.455 13.70 0.00 0.00 3.06
551 556 2.095919 CAGTGATACGTGACGAGTGTGA 60.096 50.000 13.70 0.00 0.00 3.58
552 557 2.242564 CAGTGATACGTGACGAGTGTG 58.757 52.381 13.70 0.00 0.00 3.82
553 558 1.199327 CCAGTGATACGTGACGAGTGT 59.801 52.381 13.70 0.00 0.00 3.55
554 559 1.467342 TCCAGTGATACGTGACGAGTG 59.533 52.381 13.70 1.75 0.00 3.51
555 560 1.467734 GTCCAGTGATACGTGACGAGT 59.532 52.381 13.70 0.00 0.00 4.18
556 561 1.467342 TGTCCAGTGATACGTGACGAG 59.533 52.381 13.70 0.00 0.00 4.18
557 562 1.525941 TGTCCAGTGATACGTGACGA 58.474 50.000 13.70 0.00 0.00 4.20
558 563 2.561733 ATGTCCAGTGATACGTGACG 57.438 50.000 2.24 2.24 0.00 4.35
559 564 3.181520 GCAAATGTCCAGTGATACGTGAC 60.182 47.826 0.00 0.00 0.00 3.67
560 565 3.000041 GCAAATGTCCAGTGATACGTGA 59.000 45.455 0.00 0.00 0.00 4.35
561 566 2.222796 CGCAAATGTCCAGTGATACGTG 60.223 50.000 0.00 0.00 0.00 4.49
562 567 1.999735 CGCAAATGTCCAGTGATACGT 59.000 47.619 0.00 0.00 0.00 3.57
563 568 1.999735 ACGCAAATGTCCAGTGATACG 59.000 47.619 0.00 0.00 0.00 3.06
564 569 3.658351 GACGCAAATGTCCAGTGATAC 57.342 47.619 0.00 0.00 32.61 2.24
631 636 7.822334 TCTTATTCTTTGCGAGAGGAATTTGTA 59.178 33.333 0.00 0.00 42.41 2.41
639 644 3.873952 CCCTTCTTATTCTTTGCGAGAGG 59.126 47.826 0.00 0.00 35.37 3.69
697 703 5.878116 AGATGGATTTGAAATGTGCATTTGG 59.122 36.000 14.03 0.00 40.77 3.28
737 743 5.360999 CCTCTATTCTTGGTCATTTTTCCCC 59.639 44.000 0.00 0.00 0.00 4.81
804 810 0.034960 GTTTTGGGAGGAGGAGAGGC 60.035 60.000 0.00 0.00 0.00 4.70
815 825 2.888414 GGAAAATGAGACGGTTTTGGGA 59.112 45.455 0.00 0.00 0.00 4.37
1305 1327 3.214328 GACAACAGAAGGAGCCAAAGAA 58.786 45.455 0.00 0.00 0.00 2.52
1306 1328 2.172505 TGACAACAGAAGGAGCCAAAGA 59.827 45.455 0.00 0.00 0.00 2.52
1321 1343 1.308069 ATGCAGGCATCGGTGACAAC 61.308 55.000 3.27 0.00 35.06 3.32
1328 1350 0.527113 TCACAAAATGCAGGCATCGG 59.473 50.000 7.29 3.09 35.31 4.18
1329 1351 2.350899 TTCACAAAATGCAGGCATCG 57.649 45.000 7.29 2.35 35.31 3.84
1347 1373 6.815142 GCATTAGCTCAAATCTGAACCAATTT 59.185 34.615 0.00 0.00 37.91 1.82
1413 1439 5.291128 CGATAACAGCCGAATTACTTGAAGT 59.709 40.000 2.37 2.37 0.00 3.01
1489 1515 6.635030 AAACAGTAAAGTAAGAAAGGCCAG 57.365 37.500 5.01 0.00 0.00 4.85
1645 1684 4.558226 TGTCAGTTGCCACTTATCAGAT 57.442 40.909 0.00 0.00 0.00 2.90
1646 1685 4.256110 CATGTCAGTTGCCACTTATCAGA 58.744 43.478 0.00 0.00 0.00 3.27
1712 1751 1.771854 TGGTCTCTGGCAACTTTACCA 59.228 47.619 0.00 0.00 34.80 3.25
1820 1876 4.465305 CCAAATTCCTTCTCAAGCCTGATT 59.535 41.667 0.00 0.00 0.00 2.57
1878 1934 2.829120 AGGAACTGTCTAGGCAGAGAAC 59.171 50.000 30.51 16.22 37.18 3.01
2001 2069 3.668447 ACACCATAAACAGAGCAGACAG 58.332 45.455 0.00 0.00 0.00 3.51
2039 2107 1.027357 CAAACAGTGCACCTGAAGCT 58.973 50.000 14.63 0.00 44.49 3.74
2093 2161 7.441458 GCCTTATTCTCGTATATTGTCCAGTTT 59.559 37.037 0.00 0.00 0.00 2.66
2394 2462 2.980568 TGTACTTGGATTTAGGCGTGG 58.019 47.619 0.00 0.00 0.00 4.94
2482 2550 8.571461 AACAGATCATTATTTCTTCTGCTGAA 57.429 30.769 5.85 5.85 37.84 3.02
2494 2562 6.421485 AGGCTGAACTGAACAGATCATTATT 58.579 36.000 13.44 1.03 39.10 1.40
2495 2563 5.999044 AGGCTGAACTGAACAGATCATTAT 58.001 37.500 13.44 2.63 39.10 1.28
2496 2564 5.188555 AGAGGCTGAACTGAACAGATCATTA 59.811 40.000 13.44 0.00 39.10 1.90
2498 2566 3.518705 AGAGGCTGAACTGAACAGATCAT 59.481 43.478 13.44 1.89 39.10 2.45
2499 2567 2.902486 AGAGGCTGAACTGAACAGATCA 59.098 45.455 12.67 12.67 37.81 2.92
2500 2568 3.608316 AGAGGCTGAACTGAACAGATC 57.392 47.619 8.87 6.95 37.54 2.75
2501 2569 3.450457 CCTAGAGGCTGAACTGAACAGAT 59.550 47.826 8.87 0.00 37.54 2.90
2502 2570 2.828520 CCTAGAGGCTGAACTGAACAGA 59.171 50.000 8.87 0.00 37.54 3.41
2503 2571 2.564947 ACCTAGAGGCTGAACTGAACAG 59.435 50.000 0.00 0.00 39.32 3.16
2509 2577 3.648545 AGTTGAAACCTAGAGGCTGAACT 59.351 43.478 0.00 0.00 39.32 3.01
2514 2582 4.563786 GCAGTTAGTTGAAACCTAGAGGCT 60.564 45.833 0.00 0.00 39.32 4.58
2516 2584 4.020128 AGGCAGTTAGTTGAAACCTAGAGG 60.020 45.833 0.00 0.00 42.17 3.69
2528 2596 6.465439 AAAGTTTAGCAAAGGCAGTTAGTT 57.535 33.333 0.00 0.00 44.61 2.24
2529 2597 7.447238 TGATAAAGTTTAGCAAAGGCAGTTAGT 59.553 33.333 11.04 0.00 44.61 2.24
2530 2598 7.816640 TGATAAAGTTTAGCAAAGGCAGTTAG 58.183 34.615 11.04 0.00 44.61 2.34
2531 2599 7.753309 TGATAAAGTTTAGCAAAGGCAGTTA 57.247 32.000 11.04 0.00 44.61 2.24
2593 2661 1.592669 CTGGCTAGCATCGAACCCG 60.593 63.158 18.24 0.00 37.07 5.28
2720 2788 1.076332 GGGGACGACGACATTTCTTG 58.924 55.000 0.00 0.00 0.00 3.02
2756 2824 6.421202 ACAAAGAAGCTATATACGCAACTAGC 59.579 38.462 0.00 0.00 37.45 3.42
2757 2825 7.096023 CCACAAAGAAGCTATATACGCAACTAG 60.096 40.741 0.00 0.00 0.00 2.57
2758 2826 6.700081 CCACAAAGAAGCTATATACGCAACTA 59.300 38.462 0.00 0.00 0.00 2.24
2900 2972 0.250467 ATGCACTGGTTGACGCTCTT 60.250 50.000 0.00 0.00 0.00 2.85
2945 3017 3.641436 GGGAGGGAACATTTTGACTGTTT 59.359 43.478 0.00 0.00 36.98 2.83
2957 3029 2.002018 AAAACCAGCGGGAGGGAACA 62.002 55.000 10.86 0.00 38.05 3.18
2984 3056 3.902881 AGAAAGGAGAAGCGATGACAT 57.097 42.857 0.00 0.00 0.00 3.06
2988 3060 5.010112 TCCTATGTAGAAAGGAGAAGCGATG 59.990 44.000 0.00 0.00 36.97 3.84
2989 3061 5.010213 GTCCTATGTAGAAAGGAGAAGCGAT 59.990 44.000 0.00 0.00 42.55 4.58
2990 3062 4.338682 GTCCTATGTAGAAAGGAGAAGCGA 59.661 45.833 0.00 0.00 42.55 4.93
2991 3063 4.500035 GGTCCTATGTAGAAAGGAGAAGCG 60.500 50.000 0.00 0.00 42.55 4.68
2992 3064 4.406003 TGGTCCTATGTAGAAAGGAGAAGC 59.594 45.833 0.00 0.00 42.55 3.86
2993 3065 6.098982 ACATGGTCCTATGTAGAAAGGAGAAG 59.901 42.308 0.00 0.00 42.55 2.85
3014 3089 9.546428 TCTATGGTAAGATAATGTCAACACATG 57.454 33.333 0.00 0.00 42.89 3.21
3156 3231 4.385146 GTCAGTAAAACTTCAGGCGAGTAC 59.615 45.833 0.00 0.00 0.00 2.73
3347 3422 1.606668 GACATTGGTTTCTTGCCACGA 59.393 47.619 0.00 0.00 35.46 4.35
3362 3437 4.020839 CCCTTCCAAAGATTTGCAGACATT 60.021 41.667 0.00 0.00 36.86 2.71
3455 3530 9.715123 CGACATTTGCAATATAGAACATACAAA 57.285 29.630 0.00 0.00 0.00 2.83
3465 3540 4.152223 TGCCGATCGACATTTGCAATATAG 59.848 41.667 18.66 0.00 0.00 1.31
3620 3695 8.743099 GTGAGGTTTTCTGTTAAATTTTCTTCG 58.257 33.333 0.00 0.00 0.00 3.79
3703 3778 1.550327 TCGGTCTCACAGATTGCTCT 58.450 50.000 0.00 0.00 0.00 4.09
3716 3797 3.191581 GTGATACATGATCGGATCGGTCT 59.808 47.826 15.57 8.64 37.91 3.85
3730 3811 6.891361 TCATCTTTCAATGGTTGGTGATACAT 59.109 34.615 0.00 0.00 0.00 2.29
3785 3885 6.698008 TTCAACAGAGCTTTCAGATTGAAA 57.302 33.333 4.39 4.39 43.37 2.69
3794 3894 7.540055 CCTTTGATATGTTTCAACAGAGCTTTC 59.460 37.037 4.39 0.00 43.04 2.62
3813 3913 1.819632 GCCGATCCGCACCTTTGAT 60.820 57.895 0.82 0.00 0.00 2.57
3824 3924 2.109126 GGAGTTGTGCTGCCGATCC 61.109 63.158 0.00 0.00 0.00 3.36
3840 3940 6.915985 ACCCCTTTTTAGGTAATATAGTGGGA 59.084 38.462 0.00 0.00 33.52 4.37
3841 3941 7.157947 ACCCCTTTTTAGGTAATATAGTGGG 57.842 40.000 0.00 0.00 33.52 4.61
3845 3945 7.738847 TCCGAACCCCTTTTTAGGTAATATAG 58.261 38.462 0.00 0.00 34.45 1.31
3846 3946 7.688918 TCCGAACCCCTTTTTAGGTAATATA 57.311 36.000 0.00 0.00 34.45 0.86
3847 3947 6.579850 TCCGAACCCCTTTTTAGGTAATAT 57.420 37.500 0.00 0.00 34.45 1.28
3874 3974 4.345547 GGTCCTCTAACCCTCTAGGAAATG 59.654 50.000 0.00 0.00 39.77 2.32
3878 3978 2.784682 GAGGTCCTCTAACCCTCTAGGA 59.215 54.545 12.02 0.00 41.31 2.94
3906 4006 9.512435 CTATTGAAATTATGCAACTCTCCAAAG 57.488 33.333 0.00 0.00 0.00 2.77
3957 4057 4.930963 TGCAAAGTTTTGTGATGTAGGTG 58.069 39.130 6.48 0.00 40.24 4.00
3984 4084 9.907229 TGTCTATTGAGTTCTCTCTTGTCTATA 57.093 33.333 1.53 0.00 40.98 1.31
3985 4085 8.815565 TGTCTATTGAGTTCTCTCTTGTCTAT 57.184 34.615 1.53 0.00 40.98 1.98
3986 4086 8.637196 TTGTCTATTGAGTTCTCTCTTGTCTA 57.363 34.615 1.53 0.00 40.98 2.59
3987 4087 7.531857 TTGTCTATTGAGTTCTCTCTTGTCT 57.468 36.000 1.53 0.00 40.98 3.41
3988 4088 9.296400 GTATTGTCTATTGAGTTCTCTCTTGTC 57.704 37.037 1.53 0.00 40.98 3.18
3989 4089 7.971168 CGTATTGTCTATTGAGTTCTCTCTTGT 59.029 37.037 1.53 0.00 40.98 3.16
3990 4090 7.433719 CCGTATTGTCTATTGAGTTCTCTCTTG 59.566 40.741 1.53 0.00 40.98 3.02
3991 4091 7.484975 CCGTATTGTCTATTGAGTTCTCTCTT 58.515 38.462 1.53 0.00 40.98 2.85
3992 4092 6.460399 GCCGTATTGTCTATTGAGTTCTCTCT 60.460 42.308 1.53 0.00 40.98 3.10
4014 4114 2.277084 GGACCAGTAGTTGTAATGCCG 58.723 52.381 0.00 0.00 0.00 5.69
4041 4141 6.064060 CCATCATTTATGTATGTGTGACCCT 58.936 40.000 0.00 0.00 33.34 4.34
4124 4224 8.375717 TCAATCAAACGTCTAAAAATAATGCG 57.624 30.769 0.00 0.00 0.00 4.73
4141 4241 2.496871 GGACACCATGGCATCAATCAAA 59.503 45.455 13.04 0.00 0.00 2.69
4235 4335 1.815003 GCATGGACCAAAACTGAGGAG 59.185 52.381 0.00 0.00 0.00 3.69
4242 4342 1.543944 CCTGGGGCATGGACCAAAAC 61.544 60.000 0.00 0.00 36.09 2.43
4284 4384 7.953173 GTGCATGACATTTCAATTGTTAACATG 59.047 33.333 9.56 5.99 34.61 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.