Multiple sequence alignment - TraesCS3A01G070700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G070700 chr3A 100.000 2986 0 0 1 2986 42792181 42795166 0.000000e+00 5515.0
1 TraesCS3A01G070700 chr3A 91.277 1456 98 16 851 2293 43285125 43286564 0.000000e+00 1958.0
2 TraesCS3A01G070700 chr3A 91.516 1108 73 10 1199 2293 43868171 43869270 0.000000e+00 1506.0
3 TraesCS3A01G070700 chr3A 93.775 498 21 7 282 777 43284463 43284952 0.000000e+00 739.0
4 TraesCS3A01G070700 chr3A 95.726 351 12 3 282 630 43867271 43867620 2.010000e-156 562.0
5 TraesCS3A01G070700 chr3A 92.025 163 11 2 2340 2500 43286565 43286727 8.330000e-56 228.0
6 TraesCS3A01G070700 chr3A 92.025 163 11 2 2340 2500 43869271 43869433 8.330000e-56 228.0
7 TraesCS3A01G070700 chr3A 88.360 189 19 1 2701 2886 43286896 43287084 1.080000e-54 224.0
8 TraesCS3A01G070700 chr3A 87.831 189 19 2 2701 2886 43869602 43869789 5.010000e-53 219.0
9 TraesCS3A01G070700 chr3A 90.244 123 9 2 2866 2986 43287099 43287220 1.110000e-34 158.0
10 TraesCS3A01G070700 chr3A 90.244 123 9 2 2866 2986 43869804 43869925 1.110000e-34 158.0
11 TraesCS3A01G070700 chr3A 100.000 31 0 0 779 809 43284972 43285002 1.160000e-04 58.4
12 TraesCS3A01G070700 chr6A 98.208 279 5 0 1 279 40647335 40647613 3.460000e-134 488.0
13 TraesCS3A01G070700 chr7A 99.251 267 2 0 1 267 724111738 724112004 1.610000e-132 483.0
14 TraesCS3A01G070700 chr2B 97.849 279 6 0 1 279 772256040 772256318 1.610000e-132 483.0
15 TraesCS3A01G070700 chr2B 95.683 278 10 2 1 277 99571637 99571913 2.110000e-121 446.0
16 TraesCS3A01G070700 chr3B 98.175 274 5 0 1 274 462493078 462492805 2.080000e-131 479.0
17 TraesCS3A01G070700 chr3B 76.326 773 150 22 1207 1962 53348489 53349245 1.680000e-102 383.0
18 TraesCS3A01G070700 chr5A 98.168 273 5 0 1 273 624962670 624962942 7.490000e-131 477.0
19 TraesCS3A01G070700 chr4A 97.802 273 6 0 1 273 591564249 591564521 3.480000e-129 472.0
20 TraesCS3A01G070700 chr4B 95.357 280 11 2 1 279 14705568 14705290 7.600000e-121 444.0
21 TraesCS3A01G070700 chr1A 95.652 276 10 2 1 275 255478460 255478734 2.730000e-120 442.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G070700 chr3A 42792181 42795166 2985 False 5515.0 5515 100.0000 1 2986 1 chr3A.!!$F1 2985
1 TraesCS3A01G070700 chr3A 43284463 43287220 2757 False 560.9 1958 92.6135 282 2986 6 chr3A.!!$F2 2704
2 TraesCS3A01G070700 chr3A 43867271 43869925 2654 False 534.6 1506 91.4684 282 2986 5 chr3A.!!$F3 2704
3 TraesCS3A01G070700 chr3B 53348489 53349245 756 False 383.0 383 76.3260 1207 1962 1 chr3B.!!$F1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.032952 GGTTTCCTTTTTCGGGTGGC 59.967 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2223 0.255318 CTCTGGCTGCCTTCCTTCAT 59.745 55.0 21.03 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.044894 AGGAAGAAGAAGATAGCCAGGG 58.955 50.000 0.00 0.00 0.00 4.45
22 23 2.486370 GGAAGAAGAAGATAGCCAGGGC 60.486 54.545 0.97 0.97 42.33 5.19
40 41 2.747855 GCAGTTTGGCGAGGAGGG 60.748 66.667 0.00 0.00 0.00 4.30
41 42 2.750350 CAGTTTGGCGAGGAGGGT 59.250 61.111 0.00 0.00 0.00 4.34
42 43 1.672356 CAGTTTGGCGAGGAGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
43 44 3.056328 GTTTGGCGAGGAGGGTGC 61.056 66.667 0.00 0.00 0.00 5.01
44 45 3.565214 TTTGGCGAGGAGGGTGCA 61.565 61.111 0.00 0.00 0.00 4.57
45 46 3.842925 TTTGGCGAGGAGGGTGCAC 62.843 63.158 8.80 8.80 0.00 4.57
47 48 4.101448 GGCGAGGAGGGTGCACAT 62.101 66.667 20.43 6.31 0.00 3.21
48 49 2.821366 GCGAGGAGGGTGCACATG 60.821 66.667 20.43 0.00 0.00 3.21
49 50 2.981302 CGAGGAGGGTGCACATGA 59.019 61.111 20.43 0.00 0.00 3.07
50 51 1.524002 CGAGGAGGGTGCACATGAT 59.476 57.895 20.43 0.00 0.00 2.45
51 52 0.531532 CGAGGAGGGTGCACATGATC 60.532 60.000 20.43 9.98 0.00 2.92
52 53 0.179034 GAGGAGGGTGCACATGATCC 60.179 60.000 20.43 18.16 0.00 3.36
53 54 1.152881 GGAGGGTGCACATGATCCC 60.153 63.158 20.43 9.64 40.16 3.85
54 55 1.524621 GAGGGTGCACATGATCCCG 60.525 63.158 20.43 0.00 44.13 5.14
55 56 2.257409 GAGGGTGCACATGATCCCGT 62.257 60.000 20.43 0.00 44.13 5.28
56 57 2.114670 GGGTGCACATGATCCCGTG 61.115 63.158 20.43 7.14 36.18 4.94
57 58 2.114670 GGTGCACATGATCCCGTGG 61.115 63.158 20.43 0.00 33.64 4.94
58 59 2.114670 GTGCACATGATCCCGTGGG 61.115 63.158 13.17 0.00 35.81 4.61
59 60 2.516930 GCACATGATCCCGTGGGG 60.517 66.667 4.81 0.00 46.11 4.96
60 61 2.516930 CACATGATCCCGTGGGGC 60.517 66.667 4.81 0.00 43.94 5.80
61 62 3.014538 ACATGATCCCGTGGGGCA 61.015 61.111 4.81 4.51 43.94 5.36
62 63 2.386100 ACATGATCCCGTGGGGCAT 61.386 57.895 4.81 6.73 43.94 4.40
63 64 1.900016 CATGATCCCGTGGGGCATG 60.900 63.158 19.89 19.89 43.94 4.06
64 65 3.137385 ATGATCCCGTGGGGCATGG 62.137 63.158 4.81 0.00 43.94 3.66
65 66 3.809013 GATCCCGTGGGGCATGGT 61.809 66.667 4.81 0.00 43.94 3.55
66 67 3.346734 ATCCCGTGGGGCATGGTT 61.347 61.111 4.81 0.00 43.94 3.67
67 68 2.854300 GATCCCGTGGGGCATGGTTT 62.854 60.000 4.81 0.00 43.94 3.27
68 69 3.381136 CCCGTGGGGCATGGTTTG 61.381 66.667 0.00 0.00 38.76 2.93
69 70 3.381136 CCGTGGGGCATGGTTTGG 61.381 66.667 0.00 0.00 35.92 3.28
75 76 2.361104 GGCATGGTTTGGCGAGGA 60.361 61.111 0.00 0.00 41.53 3.71
76 77 2.409870 GGCATGGTTTGGCGAGGAG 61.410 63.158 0.00 0.00 41.53 3.69
77 78 2.409870 GCATGGTTTGGCGAGGAGG 61.410 63.158 0.00 0.00 0.00 4.30
78 79 1.750399 CATGGTTTGGCGAGGAGGG 60.750 63.158 0.00 0.00 0.00 4.30
79 80 2.231380 ATGGTTTGGCGAGGAGGGT 61.231 57.895 0.00 0.00 0.00 4.34
80 81 2.359975 GGTTTGGCGAGGAGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
81 82 3.056328 GTTTGGCGAGGAGGGTGC 61.056 66.667 0.00 0.00 0.00 5.01
82 83 3.565214 TTTGGCGAGGAGGGTGCA 61.565 61.111 0.00 0.00 0.00 4.57
83 84 3.842925 TTTGGCGAGGAGGGTGCAC 62.843 63.158 8.80 8.80 0.00 4.57
87 88 3.680786 CGAGGAGGGTGCACGTGA 61.681 66.667 22.23 1.04 0.00 4.35
88 89 2.982130 GAGGAGGGTGCACGTGAT 59.018 61.111 22.23 0.00 0.00 3.06
89 90 1.153549 GAGGAGGGTGCACGTGATC 60.154 63.158 22.23 10.80 0.00 2.92
90 91 2.125106 GGAGGGTGCACGTGATCC 60.125 66.667 22.23 19.22 0.00 3.36
91 92 2.125106 GAGGGTGCACGTGATCCC 60.125 66.667 29.12 29.12 40.16 3.85
92 93 4.082523 AGGGTGCACGTGATCCCG 62.083 66.667 29.42 0.00 44.13 5.14
130 131 2.801388 GCAGTTGCCTTTTTCGCTC 58.199 52.632 0.00 0.00 34.31 5.03
131 132 0.664466 GCAGTTGCCTTTTTCGCTCC 60.664 55.000 0.00 0.00 34.31 4.70
132 133 0.385974 CAGTTGCCTTTTTCGCTCCG 60.386 55.000 0.00 0.00 0.00 4.63
133 134 0.534203 AGTTGCCTTTTTCGCTCCGA 60.534 50.000 0.00 0.00 0.00 4.55
134 135 0.385598 GTTGCCTTTTTCGCTCCGAC 60.386 55.000 0.00 0.00 34.89 4.79
135 136 1.837538 TTGCCTTTTTCGCTCCGACG 61.838 55.000 0.00 0.00 34.89 5.12
136 137 3.023591 GCCTTTTTCGCTCCGACGG 62.024 63.158 7.84 7.84 34.89 4.79
137 138 2.388232 CCTTTTTCGCTCCGACGGG 61.388 63.158 15.25 6.01 34.89 5.28
138 139 3.023591 CTTTTTCGCTCCGACGGGC 62.024 63.158 15.25 15.11 34.89 6.13
158 159 3.239253 GGACCAGGTGGACCACGT 61.239 66.667 18.40 16.27 46.96 4.49
159 160 2.030562 GACCAGGTGGACCACGTG 59.969 66.667 31.57 31.57 45.90 4.49
178 179 4.699522 GCGAGCGGGGGACTGTTT 62.700 66.667 0.00 0.00 39.64 2.83
179 180 2.434359 CGAGCGGGGGACTGTTTC 60.434 66.667 0.00 0.00 39.64 2.78
180 181 2.046217 GAGCGGGGGACTGTTTCC 60.046 66.667 0.00 0.00 45.00 3.13
181 182 2.529389 AGCGGGGGACTGTTTCCT 60.529 61.111 2.09 0.00 45.09 3.36
182 183 2.046217 GCGGGGGACTGTTTCCTC 60.046 66.667 2.09 0.00 45.81 3.71
183 184 2.593956 GCGGGGGACTGTTTCCTCT 61.594 63.158 0.00 0.00 45.81 3.69
184 185 2.067197 CGGGGGACTGTTTCCTCTT 58.933 57.895 0.00 0.00 45.81 2.85
185 186 0.400594 CGGGGGACTGTTTCCTCTTT 59.599 55.000 0.00 0.00 45.81 2.52
186 187 1.610886 CGGGGGACTGTTTCCTCTTTC 60.611 57.143 0.00 0.00 45.81 2.62
187 188 1.610886 GGGGGACTGTTTCCTCTTTCG 60.611 57.143 0.00 0.00 45.81 3.46
188 189 1.157585 GGGACTGTTTCCTCTTTCGC 58.842 55.000 0.00 0.00 45.09 4.70
189 190 1.270893 GGGACTGTTTCCTCTTTCGCT 60.271 52.381 0.00 0.00 45.09 4.93
190 191 2.070028 GGACTGTTTCCTCTTTCGCTC 58.930 52.381 0.00 0.00 41.95 5.03
191 192 1.721926 GACTGTTTCCTCTTTCGCTCG 59.278 52.381 0.00 0.00 0.00 5.03
192 193 1.340248 ACTGTTTCCTCTTTCGCTCGA 59.660 47.619 0.00 0.00 0.00 4.04
193 194 1.989165 CTGTTTCCTCTTTCGCTCGAG 59.011 52.381 8.45 8.45 0.00 4.04
194 195 1.336887 TGTTTCCTCTTTCGCTCGAGG 60.337 52.381 15.58 4.50 46.52 4.63
195 196 0.246635 TTTCCTCTTTCGCTCGAGGG 59.753 55.000 22.60 22.60 45.46 4.30
196 197 1.605058 TTCCTCTTTCGCTCGAGGGG 61.605 60.000 27.01 12.96 45.46 4.79
197 198 2.496817 CTCTTTCGCTCGAGGGGG 59.503 66.667 27.01 17.52 0.00 5.40
219 220 2.793278 CCAGGTGGTTTCCTTTTTCG 57.207 50.000 0.00 0.00 35.37 3.46
220 221 1.339929 CCAGGTGGTTTCCTTTTTCGG 59.660 52.381 0.00 0.00 35.37 4.30
221 222 1.339929 CAGGTGGTTTCCTTTTTCGGG 59.660 52.381 0.00 0.00 35.37 5.14
222 223 1.063492 AGGTGGTTTCCTTTTTCGGGT 60.063 47.619 0.00 0.00 33.52 5.28
223 224 1.067974 GGTGGTTTCCTTTTTCGGGTG 59.932 52.381 0.00 0.00 0.00 4.61
224 225 1.067974 GTGGTTTCCTTTTTCGGGTGG 59.932 52.381 0.00 0.00 0.00 4.61
225 226 0.032952 GGTTTCCTTTTTCGGGTGGC 59.967 55.000 0.00 0.00 0.00 5.01
226 227 0.032952 GTTTCCTTTTTCGGGTGGCC 59.967 55.000 0.00 0.00 0.00 5.36
227 228 1.457009 TTTCCTTTTTCGGGTGGCCG 61.457 55.000 0.00 0.00 0.00 6.13
228 229 4.050934 CCTTTTTCGGGTGGCCGC 62.051 66.667 8.12 8.12 0.00 6.53
229 230 2.983592 CTTTTTCGGGTGGCCGCT 60.984 61.111 17.49 0.00 0.00 5.52
230 231 3.267597 CTTTTTCGGGTGGCCGCTG 62.268 63.158 17.49 9.53 0.00 5.18
244 245 2.030262 GCTGGCTAGCGATCCCAG 59.970 66.667 6.22 14.08 46.95 4.45
245 246 2.739784 CTGGCTAGCGATCCCAGG 59.260 66.667 9.00 0.00 41.87 4.45
246 247 2.844362 TGGCTAGCGATCCCAGGG 60.844 66.667 9.00 0.00 0.00 4.45
247 248 4.321966 GGCTAGCGATCCCAGGGC 62.322 72.222 9.00 0.00 0.00 5.19
248 249 4.671569 GCTAGCGATCCCAGGGCG 62.672 72.222 0.00 0.00 0.00 6.13
249 250 3.996124 CTAGCGATCCCAGGGCGG 61.996 72.222 0.00 0.00 0.00 6.13
271 272 4.849329 CCGCCCACTAGACGCGTC 62.849 72.222 31.30 31.30 44.29 5.19
272 273 4.849329 CGCCCACTAGACGCGTCC 62.849 72.222 34.08 16.62 40.99 4.79
273 274 3.755628 GCCCACTAGACGCGTCCA 61.756 66.667 34.08 21.72 0.00 4.02
274 275 2.967397 CCCACTAGACGCGTCCAA 59.033 61.111 34.08 21.97 0.00 3.53
275 276 1.290955 CCCACTAGACGCGTCCAAA 59.709 57.895 34.08 19.45 0.00 3.28
276 277 0.320073 CCCACTAGACGCGTCCAAAA 60.320 55.000 34.08 16.98 0.00 2.44
277 278 1.504359 CCACTAGACGCGTCCAAAAA 58.496 50.000 34.08 14.54 0.00 1.94
322 324 3.493503 CCGTAAAATTTCGCTAGCCCTAG 59.506 47.826 9.66 0.00 36.29 3.02
352 354 4.285790 TCCCCCTCACCCCTTGCT 62.286 66.667 0.00 0.00 0.00 3.91
356 358 2.935481 CCTCACCCCTTGCTCCCA 60.935 66.667 0.00 0.00 0.00 4.37
466 468 5.221244 ACCTGAACCAATTGTAAGCAGTTTC 60.221 40.000 4.43 0.00 0.00 2.78
481 483 2.817258 CAGTTTCAGACTCGAGTCCTCT 59.183 50.000 35.83 24.03 45.85 3.69
495 497 7.039923 ACTCGAGTCCTCTAGTATTTTGTCAAA 60.040 37.037 13.58 0.00 34.40 2.69
512 514 3.802685 GTCAAAGTGTTGCTAAGTCGACT 59.197 43.478 13.58 13.58 34.50 4.18
570 573 3.243907 GCCTCGATGTAGCTGTCCTATTT 60.244 47.826 0.00 0.00 0.00 1.40
584 587 2.572556 TCCTATTTGTTTGCCGTCCCTA 59.427 45.455 0.00 0.00 0.00 3.53
676 679 3.899052 ATGTTTTCATGCTGATTGGGG 57.101 42.857 0.00 0.00 39.30 4.96
677 680 2.886913 TGTTTTCATGCTGATTGGGGA 58.113 42.857 0.00 0.00 0.00 4.81
678 681 2.827322 TGTTTTCATGCTGATTGGGGAG 59.173 45.455 0.00 0.00 0.00 4.30
679 682 2.148446 TTTCATGCTGATTGGGGAGG 57.852 50.000 0.00 0.00 0.00 4.30
680 683 0.259647 TTCATGCTGATTGGGGAGGG 59.740 55.000 0.00 0.00 0.00 4.30
681 684 1.152610 CATGCTGATTGGGGAGGGG 60.153 63.158 0.00 0.00 0.00 4.79
682 685 2.397902 ATGCTGATTGGGGAGGGGG 61.398 63.158 0.00 0.00 0.00 5.40
754 757 2.109799 CTGCATCCGTAGCCTGGG 59.890 66.667 0.00 0.00 0.00 4.45
777 780 5.353400 GGGGTTGCTAATCTTGTAGTGTTAC 59.647 44.000 0.00 0.00 0.00 2.50
811 832 9.754382 TGTAGTTCAAGTCGAAATATATAACCC 57.246 33.333 0.00 0.00 36.62 4.11
812 833 9.978044 GTAGTTCAAGTCGAAATATATAACCCT 57.022 33.333 0.00 0.00 36.62 4.34
869 971 3.737559 AAATTCCATGGGTAGACAGCA 57.262 42.857 13.02 0.00 0.00 4.41
926 1028 9.841880 CTTGATGAATTAAATCTCATATGCCTG 57.158 33.333 0.00 0.00 32.40 4.85
941 1043 8.181904 TCATATGCCTGTCTTCTTTTCTTTTT 57.818 30.769 0.00 0.00 0.00 1.94
993 1095 9.065871 GCACTGCAGAATATAAACTAAAAAGTG 57.934 33.333 23.35 3.06 33.63 3.16
994 1096 9.559958 CACTGCAGAATATAAACTAAAAAGTGG 57.440 33.333 23.35 0.00 0.00 4.00
1006 1108 4.522789 ACTAAAAAGTGGTTACCATGGCTG 59.477 41.667 13.04 0.00 35.28 4.85
1055 1157 9.748708 TCTCTCATTTTTCTTTGTATGTTTTGG 57.251 29.630 0.00 0.00 0.00 3.28
1065 1167 7.831753 TCTTTGTATGTTTTGGTTTCTGTCAA 58.168 30.769 0.00 0.00 0.00 3.18
1076 1178 4.994852 TGGTTTCTGTCAATTCTCTTACCG 59.005 41.667 0.00 0.00 0.00 4.02
1093 1195 6.561614 TCTTACCGTGAAAGCTAATGTCTAG 58.438 40.000 0.00 0.00 0.00 2.43
1099 1201 4.095036 GTGAAAGCTAATGTCTAGCAACCC 59.905 45.833 6.54 0.00 42.68 4.11
1109 1211 9.391006 CTAATGTCTAGCAACCCTTTTTATGTA 57.609 33.333 0.00 0.00 0.00 2.29
1110 1212 8.644374 AATGTCTAGCAACCCTTTTTATGTAA 57.356 30.769 0.00 0.00 0.00 2.41
1120 1222 9.349713 CAACCCTTTTTATGTAATAGGATGCTA 57.650 33.333 0.00 0.00 37.19 3.49
1125 1227 9.546909 CTTTTTATGTAATAGGATGCTATTGCG 57.453 33.333 24.98 8.91 43.34 4.85
1128 1230 3.996363 TGTAATAGGATGCTATTGCGCTG 59.004 43.478 24.98 0.00 43.34 5.18
1143 1245 2.017049 GCGCTGAATGGACTAAATGGT 58.983 47.619 0.00 0.00 0.00 3.55
1148 1250 4.588899 CTGAATGGACTAAATGGTGACCA 58.411 43.478 6.84 6.84 38.19 4.02
1163 1265 3.609853 GTGACCATCATAGGCAGTTTCA 58.390 45.455 0.00 0.00 0.00 2.69
1170 1272 4.689612 TCATAGGCAGTTTCATAGGTCC 57.310 45.455 0.00 0.00 0.00 4.46
1192 1294 6.527023 GTCCGTGATACCGATTCTTATGTATG 59.473 42.308 0.00 0.00 0.00 2.39
1194 1296 7.040271 TCCGTGATACCGATTCTTATGTATGAA 60.040 37.037 0.00 0.00 0.00 2.57
1195 1297 7.597369 CCGTGATACCGATTCTTATGTATGAAA 59.403 37.037 0.00 0.00 0.00 2.69
1204 1306 8.148351 CGATTCTTATGTATGAAAGGGAAGGTA 58.852 37.037 0.00 0.00 0.00 3.08
1299 1401 7.640597 AATAGCATACAAGGGGTTACTTTTC 57.359 36.000 0.00 0.00 0.00 2.29
1375 1477 1.070786 GACCTTGAACACCTCGGCA 59.929 57.895 0.00 0.00 0.00 5.69
1412 1514 2.163818 TTGGCTGGTTTCTACTGTCG 57.836 50.000 0.00 0.00 0.00 4.35
1501 1603 6.462552 AGATGTATGGATATCAGGTCGATG 57.537 41.667 4.83 0.00 35.39 3.84
1536 1638 7.126398 GGCGATTACAAAATGATCTAACTGAC 58.874 38.462 0.00 0.00 0.00 3.51
1540 1642 3.689649 ACAAAATGATCTAACTGACGGCC 59.310 43.478 0.00 0.00 0.00 6.13
1541 1643 2.225068 AATGATCTAACTGACGGCCG 57.775 50.000 26.86 26.86 0.00 6.13
1543 1645 0.172578 TGATCTAACTGACGGCCGTG 59.827 55.000 39.65 25.40 0.00 4.94
1644 1749 7.933577 ACAGTCATGTAGAGAAACAAGATCAAA 59.066 33.333 0.00 0.00 38.09 2.69
1670 1781 3.279434 GGGACATGATTGTACACCTTCC 58.721 50.000 0.00 0.00 38.57 3.46
1704 1815 5.617751 CGAAGTGGATCACCTGTTTTCAATC 60.618 44.000 0.00 0.00 34.49 2.67
1781 1892 5.904984 TGGATGTTGGGTATATAACTGCT 57.095 39.130 0.00 0.00 0.00 4.24
1783 1894 6.765403 TGGATGTTGGGTATATAACTGCTAC 58.235 40.000 0.00 0.00 0.00 3.58
1784 1895 6.171213 GGATGTTGGGTATATAACTGCTACC 58.829 44.000 0.00 0.00 35.24 3.18
1952 2070 4.478206 TGGTGAACAAAAATTTGCTCCA 57.522 36.364 5.82 6.77 41.79 3.86
1962 2080 4.591321 AAATTTGCTCCACCTGAGGATA 57.409 40.909 4.99 0.00 41.51 2.59
1991 2109 2.103373 TCTCCTTCACCCTGAGAATCG 58.897 52.381 0.00 0.00 38.61 3.34
1996 2114 3.384789 CCTTCACCCTGAGAATCGTATGA 59.615 47.826 0.00 0.00 38.61 2.15
2025 2143 3.996480 GTAGGCATACCACTCTCATTCC 58.004 50.000 0.00 0.00 39.06 3.01
2026 2144 2.481441 AGGCATACCACTCTCATTCCA 58.519 47.619 0.00 0.00 39.06 3.53
2043 2161 4.426736 TTCCAGCATGCATAATCTCTGA 57.573 40.909 21.98 0.00 31.97 3.27
2068 2186 4.511617 TTGCCTTATTTTGACATTGCGA 57.488 36.364 0.00 0.00 0.00 5.10
2069 2187 4.717233 TGCCTTATTTTGACATTGCGAT 57.283 36.364 0.00 0.00 0.00 4.58
2070 2188 4.422840 TGCCTTATTTTGACATTGCGATG 58.577 39.130 12.66 12.66 39.25 3.84
2071 2189 3.243643 GCCTTATTTTGACATTGCGATGC 59.756 43.478 14.18 7.54 36.72 3.91
2072 2190 4.422840 CCTTATTTTGACATTGCGATGCA 58.577 39.130 14.18 10.02 36.72 3.96
2083 2201 5.637809 ACATTGCGATGCATAATCATCATC 58.362 37.500 14.18 0.00 42.15 2.92
2087 2205 4.096311 GCGATGCATAATCATCATCTTGC 58.904 43.478 0.00 0.00 42.15 4.01
2093 2211 1.700955 AATCATCATCTTGCAGGGCC 58.299 50.000 0.00 0.00 0.00 5.80
2095 2213 1.452651 CATCATCTTGCAGGGCCGT 60.453 57.895 0.00 0.00 0.00 5.68
2105 2223 1.821759 CAGGGCCGTTGTGTGAACA 60.822 57.895 0.00 0.00 0.00 3.18
2107 2225 1.172180 AGGGCCGTTGTGTGAACATG 61.172 55.000 0.00 0.00 0.00 3.21
2108 2226 1.169661 GGGCCGTTGTGTGAACATGA 61.170 55.000 0.00 0.00 0.00 3.07
2110 2228 1.334960 GGCCGTTGTGTGAACATGAAG 60.335 52.381 0.00 0.00 0.00 3.02
2116 2240 2.229792 TGTGTGAACATGAAGGAAGGC 58.770 47.619 0.00 0.00 0.00 4.35
2117 2241 2.229792 GTGTGAACATGAAGGAAGGCA 58.770 47.619 0.00 0.00 0.00 4.75
2125 2249 1.748500 GAAGGAAGGCAGCCAGAGC 60.749 63.158 15.80 0.00 40.32 4.09
2143 2267 4.505191 CAGAGCATTGTTGTTGGTTTCTTG 59.495 41.667 0.00 0.00 0.00 3.02
2144 2268 4.160252 AGAGCATTGTTGTTGGTTTCTTGT 59.840 37.500 0.00 0.00 0.00 3.16
2151 2275 4.461081 TGTTGTTGGTTTCTTGTGTAGCTT 59.539 37.500 0.00 0.00 0.00 3.74
2183 2307 7.607223 TCTCCTTGACTGTTTCTAGTAGTCTAC 59.393 40.741 1.39 1.39 41.01 2.59
2190 2314 6.942576 ACTGTTTCTAGTAGTCTACCCGTTTA 59.057 38.462 6.38 0.00 0.00 2.01
2194 2318 7.759489 TTCTAGTAGTCTACCCGTTTAAACA 57.241 36.000 18.07 0.00 0.00 2.83
2195 2319 7.944729 TCTAGTAGTCTACCCGTTTAAACAT 57.055 36.000 18.07 5.69 0.00 2.71
2197 2321 8.246180 TCTAGTAGTCTACCCGTTTAAACATTG 58.754 37.037 18.07 7.95 0.00 2.82
2199 2323 7.895759 AGTAGTCTACCCGTTTAAACATTGTA 58.104 34.615 18.07 13.23 0.00 2.41
2201 2325 7.605410 AGTCTACCCGTTTAAACATTGTATG 57.395 36.000 18.07 9.30 0.00 2.39
2203 2327 8.313292 AGTCTACCCGTTTAAACATTGTATGTA 58.687 33.333 18.07 7.10 44.07 2.29
2225 2349 2.283884 GCATTTGGTTGGTGTTGTTTCG 59.716 45.455 0.00 0.00 0.00 3.46
2227 2351 1.178276 TTGGTTGGTGTTGTTTCGCT 58.822 45.000 0.00 0.00 0.00 4.93
2228 2352 2.039818 TGGTTGGTGTTGTTTCGCTA 57.960 45.000 0.00 0.00 0.00 4.26
2256 2382 6.381420 AGCTCCTTCACTATGTAACTATGTGT 59.619 38.462 0.00 0.00 0.00 3.72
2257 2383 6.477033 GCTCCTTCACTATGTAACTATGTGTG 59.523 42.308 0.00 0.00 0.00 3.82
2272 2398 1.151221 TGTGCTGCTGTGGTCCAAT 59.849 52.632 0.00 0.00 0.00 3.16
2293 2420 4.301072 TCTTTGTAGTAGCAGGGCATTT 57.699 40.909 0.00 0.00 0.00 2.32
2294 2421 4.009675 TCTTTGTAGTAGCAGGGCATTTG 58.990 43.478 0.00 0.00 0.00 2.32
2295 2422 3.433306 TTGTAGTAGCAGGGCATTTGT 57.567 42.857 0.00 0.00 0.00 2.83
2296 2423 2.710377 TGTAGTAGCAGGGCATTTGTG 58.290 47.619 0.00 0.00 0.00 3.33
2297 2424 2.304470 TGTAGTAGCAGGGCATTTGTGA 59.696 45.455 0.00 0.00 0.00 3.58
2298 2425 2.814805 AGTAGCAGGGCATTTGTGAT 57.185 45.000 0.00 0.00 0.00 3.06
2299 2426 2.648059 AGTAGCAGGGCATTTGTGATC 58.352 47.619 0.00 0.00 0.00 2.92
2300 2427 1.678101 GTAGCAGGGCATTTGTGATCC 59.322 52.381 0.00 0.00 0.00 3.36
2301 2428 0.040058 AGCAGGGCATTTGTGATCCA 59.960 50.000 0.00 0.00 0.00 3.41
2302 2429 0.896923 GCAGGGCATTTGTGATCCAA 59.103 50.000 0.00 0.00 0.00 3.53
2303 2430 1.483415 GCAGGGCATTTGTGATCCAAT 59.517 47.619 0.00 0.00 31.81 3.16
2304 2431 2.482490 GCAGGGCATTTGTGATCCAATC 60.482 50.000 0.00 0.00 31.81 2.67
2305 2432 3.028850 CAGGGCATTTGTGATCCAATCT 58.971 45.455 0.00 0.00 31.81 2.40
2306 2433 3.028850 AGGGCATTTGTGATCCAATCTG 58.971 45.455 0.00 0.00 31.81 2.90
2307 2434 3.025978 GGGCATTTGTGATCCAATCTGA 58.974 45.455 0.00 0.00 31.81 3.27
2308 2435 3.640029 GGGCATTTGTGATCCAATCTGAT 59.360 43.478 0.00 0.00 31.81 2.90
2309 2436 4.828939 GGGCATTTGTGATCCAATCTGATA 59.171 41.667 0.00 0.00 31.81 2.15
2310 2437 5.479375 GGGCATTTGTGATCCAATCTGATAT 59.521 40.000 0.00 0.00 31.81 1.63
2311 2438 6.660521 GGGCATTTGTGATCCAATCTGATATA 59.339 38.462 0.00 0.00 31.81 0.86
2312 2439 7.177216 GGGCATTTGTGATCCAATCTGATATAA 59.823 37.037 0.00 0.00 31.81 0.98
2313 2440 8.025445 GGCATTTGTGATCCAATCTGATATAAC 58.975 37.037 0.00 0.00 31.81 1.89
2314 2441 8.570488 GCATTTGTGATCCAATCTGATATAACA 58.430 33.333 0.00 0.00 31.81 2.41
2316 2443 7.734924 TTGTGATCCAATCTGATATAACAGC 57.265 36.000 5.16 0.00 37.75 4.40
2317 2444 5.928264 TGTGATCCAATCTGATATAACAGCG 59.072 40.000 5.16 0.00 37.75 5.18
2318 2445 5.928839 GTGATCCAATCTGATATAACAGCGT 59.071 40.000 5.16 0.00 37.75 5.07
2319 2446 6.090088 GTGATCCAATCTGATATAACAGCGTC 59.910 42.308 5.16 0.00 37.75 5.19
2320 2447 5.529581 TCCAATCTGATATAACAGCGTCA 57.470 39.130 5.16 0.00 37.75 4.35
2321 2448 5.289595 TCCAATCTGATATAACAGCGTCAC 58.710 41.667 5.16 0.00 37.75 3.67
2322 2449 5.049828 CCAATCTGATATAACAGCGTCACA 58.950 41.667 5.16 0.00 37.75 3.58
2323 2450 5.698089 CCAATCTGATATAACAGCGTCACAT 59.302 40.000 5.16 0.00 37.75 3.21
2324 2451 6.203530 CCAATCTGATATAACAGCGTCACATT 59.796 38.462 5.16 0.00 37.75 2.71
2325 2452 7.254898 CCAATCTGATATAACAGCGTCACATTT 60.255 37.037 5.16 0.00 37.75 2.32
2326 2453 7.792374 ATCTGATATAACAGCGTCACATTTT 57.208 32.000 5.16 0.00 37.75 1.82
2327 2454 7.003939 TCTGATATAACAGCGTCACATTTTG 57.996 36.000 5.16 0.00 37.75 2.44
2328 2455 6.593770 TCTGATATAACAGCGTCACATTTTGT 59.406 34.615 5.16 0.00 37.75 2.83
2329 2456 7.119116 TCTGATATAACAGCGTCACATTTTGTT 59.881 33.333 5.16 0.00 37.75 2.83
2330 2457 8.257830 TGATATAACAGCGTCACATTTTGTTA 57.742 30.769 0.00 0.00 38.25 2.41
2331 2458 8.172484 TGATATAACAGCGTCACATTTTGTTAC 58.828 33.333 0.00 0.00 37.14 2.50
2332 2459 4.893424 AACAGCGTCACATTTTGTTACT 57.107 36.364 0.00 0.00 30.79 2.24
2333 2460 4.893424 ACAGCGTCACATTTTGTTACTT 57.107 36.364 0.00 0.00 0.00 2.24
2334 2461 4.597079 ACAGCGTCACATTTTGTTACTTG 58.403 39.130 0.00 0.00 0.00 3.16
2335 2462 3.974401 CAGCGTCACATTTTGTTACTTGG 59.026 43.478 0.00 0.00 0.00 3.61
2336 2463 3.630312 AGCGTCACATTTTGTTACTTGGT 59.370 39.130 0.00 0.00 0.00 3.67
2337 2464 4.097286 AGCGTCACATTTTGTTACTTGGTT 59.903 37.500 0.00 0.00 0.00 3.67
2338 2465 4.206200 GCGTCACATTTTGTTACTTGGTTG 59.794 41.667 0.00 0.00 0.00 3.77
2360 2487 7.201679 GGTTGATTGTGAAGTGAGATTATCCAG 60.202 40.741 0.00 0.00 0.00 3.86
2373 2500 5.426504 AGATTATCCAGTCAAGTTGAGCTG 58.573 41.667 19.95 19.95 0.00 4.24
2382 2509 2.369860 TCAAGTTGAGCTGTGATCCAGT 59.630 45.455 0.08 1.44 43.55 4.00
2389 2516 1.280421 AGCTGTGATCCAGTTTCTCCC 59.720 52.381 11.37 0.00 43.55 4.30
2390 2517 1.280421 GCTGTGATCCAGTTTCTCCCT 59.720 52.381 11.37 0.00 43.55 4.20
2393 2522 2.834549 TGTGATCCAGTTTCTCCCTCTC 59.165 50.000 0.00 0.00 0.00 3.20
2397 2526 0.908198 CCAGTTTCTCCCTCTCCTGG 59.092 60.000 0.00 0.00 34.10 4.45
2399 2528 1.981495 CAGTTTCTCCCTCTCCTGGTT 59.019 52.381 0.00 0.00 0.00 3.67
2400 2529 3.173965 CAGTTTCTCCCTCTCCTGGTTA 58.826 50.000 0.00 0.00 0.00 2.85
2408 2537 7.613551 TCTCCCTCTCCTGGTTAATTTATAC 57.386 40.000 0.00 0.00 0.00 1.47
2411 2540 8.030913 TCCCTCTCCTGGTTAATTTATACTTC 57.969 38.462 0.00 0.00 0.00 3.01
2415 2544 9.892130 CTCTCCTGGTTAATTTATACTTCTGTT 57.108 33.333 0.00 0.00 0.00 3.16
2501 2630 7.835634 GCTATAGGCTTTCCATTCTACATAC 57.164 40.000 1.04 0.00 38.06 2.39
2502 2631 6.819146 GCTATAGGCTTTCCATTCTACATACC 59.181 42.308 1.04 0.00 38.06 2.73
2503 2632 4.439253 AGGCTTTCCATTCTACATACCC 57.561 45.455 0.00 0.00 33.74 3.69
2504 2633 3.138468 AGGCTTTCCATTCTACATACCCC 59.862 47.826 0.00 0.00 33.74 4.95
2505 2634 3.117663 GGCTTTCCATTCTACATACCCCA 60.118 47.826 0.00 0.00 0.00 4.96
2506 2635 4.137543 GCTTTCCATTCTACATACCCCAG 58.862 47.826 0.00 0.00 0.00 4.45
2507 2636 4.385310 GCTTTCCATTCTACATACCCCAGT 60.385 45.833 0.00 0.00 0.00 4.00
2508 2637 4.771114 TTCCATTCTACATACCCCAGTG 57.229 45.455 0.00 0.00 0.00 3.66
2509 2638 3.731431 TCCATTCTACATACCCCAGTGT 58.269 45.455 0.00 0.00 0.00 3.55
2510 2639 4.886163 TCCATTCTACATACCCCAGTGTA 58.114 43.478 0.00 0.00 0.00 2.90
2511 2640 5.282129 TCCATTCTACATACCCCAGTGTAA 58.718 41.667 0.00 0.00 31.05 2.41
2512 2641 5.365605 TCCATTCTACATACCCCAGTGTAAG 59.634 44.000 0.00 0.00 31.05 2.34
2525 2654 3.402110 CAGTGTAAGATTGTGCTGGTGA 58.598 45.455 0.00 0.00 0.00 4.02
2526 2655 4.005650 CAGTGTAAGATTGTGCTGGTGAT 58.994 43.478 0.00 0.00 0.00 3.06
2527 2656 4.005650 AGTGTAAGATTGTGCTGGTGATG 58.994 43.478 0.00 0.00 0.00 3.07
2528 2657 2.749076 TGTAAGATTGTGCTGGTGATGC 59.251 45.455 0.00 0.00 0.00 3.91
2529 2658 2.211250 AAGATTGTGCTGGTGATGCT 57.789 45.000 0.00 0.00 0.00 3.79
2530 2659 2.211250 AGATTGTGCTGGTGATGCTT 57.789 45.000 0.00 0.00 0.00 3.91
2531 2660 3.354948 AGATTGTGCTGGTGATGCTTA 57.645 42.857 0.00 0.00 0.00 3.09
2532 2661 3.276857 AGATTGTGCTGGTGATGCTTAG 58.723 45.455 0.00 0.00 0.00 2.18
2533 2662 1.825090 TTGTGCTGGTGATGCTTAGG 58.175 50.000 0.00 0.00 0.00 2.69
2534 2663 0.692476 TGTGCTGGTGATGCTTAGGT 59.308 50.000 0.00 0.00 0.00 3.08
2535 2664 1.073763 TGTGCTGGTGATGCTTAGGTT 59.926 47.619 0.00 0.00 0.00 3.50
2536 2665 2.162681 GTGCTGGTGATGCTTAGGTTT 58.837 47.619 0.00 0.00 0.00 3.27
2537 2666 2.558359 GTGCTGGTGATGCTTAGGTTTT 59.442 45.455 0.00 0.00 0.00 2.43
2538 2667 3.756434 GTGCTGGTGATGCTTAGGTTTTA 59.244 43.478 0.00 0.00 0.00 1.52
2539 2668 4.399303 GTGCTGGTGATGCTTAGGTTTTAT 59.601 41.667 0.00 0.00 0.00 1.40
2540 2669 5.016173 TGCTGGTGATGCTTAGGTTTTATT 58.984 37.500 0.00 0.00 0.00 1.40
2541 2670 5.105797 TGCTGGTGATGCTTAGGTTTTATTG 60.106 40.000 0.00 0.00 0.00 1.90
2542 2671 5.105756 GCTGGTGATGCTTAGGTTTTATTGT 60.106 40.000 0.00 0.00 0.00 2.71
2543 2672 6.509418 TGGTGATGCTTAGGTTTTATTGTC 57.491 37.500 0.00 0.00 0.00 3.18
2544 2673 6.245408 TGGTGATGCTTAGGTTTTATTGTCT 58.755 36.000 0.00 0.00 0.00 3.41
2545 2674 6.719370 TGGTGATGCTTAGGTTTTATTGTCTT 59.281 34.615 0.00 0.00 0.00 3.01
2546 2675 7.885922 TGGTGATGCTTAGGTTTTATTGTCTTA 59.114 33.333 0.00 0.00 0.00 2.10
2547 2676 8.736244 GGTGATGCTTAGGTTTTATTGTCTTAA 58.264 33.333 0.00 0.00 0.00 1.85
2604 2733 5.273523 CATGAGACACACATGTAACACTG 57.726 43.478 0.00 0.00 39.95 3.66
2605 2734 3.130633 TGAGACACACATGTAACACTGC 58.869 45.455 0.00 0.00 39.95 4.40
2606 2735 3.181466 TGAGACACACATGTAACACTGCT 60.181 43.478 0.00 0.00 39.95 4.24
2607 2736 3.393800 AGACACACATGTAACACTGCTC 58.606 45.455 0.00 0.00 39.95 4.26
2608 2737 3.130633 GACACACATGTAACACTGCTCA 58.869 45.455 0.00 0.00 39.95 4.26
2609 2738 3.743521 ACACACATGTAACACTGCTCAT 58.256 40.909 0.00 0.00 37.26 2.90
2610 2739 4.893608 ACACACATGTAACACTGCTCATA 58.106 39.130 0.00 0.00 37.26 2.15
2611 2740 5.491070 ACACACATGTAACACTGCTCATAT 58.509 37.500 0.00 0.00 37.26 1.78
2612 2741 5.352293 ACACACATGTAACACTGCTCATATG 59.648 40.000 0.00 0.00 37.26 1.78
2613 2742 5.352293 CACACATGTAACACTGCTCATATGT 59.648 40.000 0.00 0.00 29.74 2.29
2614 2743 5.582269 ACACATGTAACACTGCTCATATGTC 59.418 40.000 0.00 0.00 0.00 3.06
2615 2744 5.007039 CACATGTAACACTGCTCATATGTCC 59.993 44.000 0.00 0.00 0.00 4.02
2616 2745 4.817318 TGTAACACTGCTCATATGTCCA 57.183 40.909 1.90 0.61 0.00 4.02
2617 2746 5.357742 TGTAACACTGCTCATATGTCCAT 57.642 39.130 1.90 0.00 0.00 3.41
2657 2786 0.312102 GTTGAGCTGACTTGGGCAAC 59.688 55.000 0.00 0.00 0.00 4.17
2676 2805 1.656441 CAGTGGTTTGGCTGTGAGC 59.344 57.895 0.00 0.00 41.46 4.26
2677 2806 0.820891 CAGTGGTTTGGCTGTGAGCT 60.821 55.000 0.00 0.00 41.99 4.09
2686 2815 1.963338 GCTGTGAGCTGGTGTGACC 60.963 63.158 0.00 0.00 38.45 4.02
2705 2834 3.262420 ACCGAATGCATAGTTCTGTCAC 58.738 45.455 0.00 0.00 0.00 3.67
2707 2836 3.873361 CCGAATGCATAGTTCTGTCACAT 59.127 43.478 0.00 0.00 0.00 3.21
2708 2837 4.260497 CCGAATGCATAGTTCTGTCACATG 60.260 45.833 0.00 0.00 0.00 3.21
2709 2838 4.330894 CGAATGCATAGTTCTGTCACATGT 59.669 41.667 0.00 0.00 0.00 3.21
2711 2840 6.035975 CGAATGCATAGTTCTGTCACATGTAA 59.964 38.462 0.00 0.00 0.00 2.41
2713 2842 8.962884 AATGCATAGTTCTGTCACATGTAATA 57.037 30.769 0.00 0.00 0.00 0.98
2714 2843 9.565090 AATGCATAGTTCTGTCACATGTAATAT 57.435 29.630 0.00 0.00 0.00 1.28
2715 2844 8.593492 TGCATAGTTCTGTCACATGTAATATC 57.407 34.615 0.00 0.00 0.00 1.63
2716 2845 8.203485 TGCATAGTTCTGTCACATGTAATATCA 58.797 33.333 0.00 0.00 0.00 2.15
2717 2846 9.212641 GCATAGTTCTGTCACATGTAATATCAT 57.787 33.333 0.00 0.00 0.00 2.45
2740 2902 5.808042 TTTCATAGATGCTGAAGAAGTGC 57.192 39.130 0.00 0.00 34.33 4.40
2741 2903 3.801698 TCATAGATGCTGAAGAAGTGCC 58.198 45.455 0.00 0.00 0.00 5.01
2760 2922 2.726066 GCCGAGAATTCTTTGAGTTGCG 60.726 50.000 9.87 5.72 0.00 4.85
2772 2934 3.057969 TGAGTTGCGGTTCAGATGATT 57.942 42.857 0.00 0.00 0.00 2.57
2777 2939 4.037923 AGTTGCGGTTCAGATGATTTTGTT 59.962 37.500 0.00 0.00 0.00 2.83
2781 2943 3.305267 CGGTTCAGATGATTTTGTTGCCA 60.305 43.478 0.00 0.00 0.00 4.92
2842 3007 3.181456 ACAGAGCTATCTTCAGGGCATTC 60.181 47.826 0.00 0.00 31.64 2.67
2856 3021 3.826157 AGGGCATTCTCATTGAAAACGAA 59.174 39.130 0.00 0.00 38.29 3.85
2857 3022 4.280677 AGGGCATTCTCATTGAAAACGAAA 59.719 37.500 0.00 0.00 38.29 3.46
2858 3023 4.987912 GGGCATTCTCATTGAAAACGAAAA 59.012 37.500 0.00 0.00 38.29 2.29
2859 3024 5.107491 GGGCATTCTCATTGAAAACGAAAAC 60.107 40.000 0.00 0.00 38.29 2.43
2862 3027 6.088085 GCATTCTCATTGAAAACGAAAACGAT 59.912 34.615 0.00 0.00 38.29 3.73
2864 3029 9.277565 CATTCTCATTGAAAACGAAAACGATAT 57.722 29.630 0.00 0.00 38.29 1.63
2877 3077 8.922058 ACGAAAACGATATCACAATAGTAGTT 57.078 30.769 3.12 0.00 0.00 2.24
2941 3143 5.808042 ACAGCAAATAACAGAGCATACTG 57.192 39.130 0.00 0.00 42.78 2.74
2952 3154 5.121811 ACAGAGCATACTGGCATTAAAGAG 58.878 41.667 9.61 0.00 41.59 2.85
2953 3155 4.024218 CAGAGCATACTGGCATTAAAGAGC 60.024 45.833 0.00 0.00 35.83 4.09
2982 3184 2.099062 GCATCAAACCTCGCGCAG 59.901 61.111 8.75 3.84 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.044894 CCCTGGCTATCTTCTTCTTCCT 58.955 50.000 0.00 0.00 0.00 3.36
1 2 2.486370 GCCCTGGCTATCTTCTTCTTCC 60.486 54.545 0.00 0.00 38.26 3.46
2 3 2.804933 CGCCCTGGCTATCTTCTTCTTC 60.805 54.545 6.60 0.00 39.32 2.87
3 4 1.139853 CGCCCTGGCTATCTTCTTCTT 59.860 52.381 6.60 0.00 39.32 2.52
4 5 0.755686 CGCCCTGGCTATCTTCTTCT 59.244 55.000 6.60 0.00 39.32 2.85
5 6 0.882484 GCGCCCTGGCTATCTTCTTC 60.882 60.000 6.60 0.00 39.32 2.87
6 7 1.147153 GCGCCCTGGCTATCTTCTT 59.853 57.895 6.60 0.00 39.32 2.52
7 8 2.037620 CTGCGCCCTGGCTATCTTCT 62.038 60.000 4.18 0.00 39.32 2.85
8 9 1.596477 CTGCGCCCTGGCTATCTTC 60.596 63.158 4.18 0.00 39.32 2.87
9 10 1.915078 AACTGCGCCCTGGCTATCTT 61.915 55.000 4.18 0.00 39.32 2.40
10 11 1.915078 AAACTGCGCCCTGGCTATCT 61.915 55.000 4.18 0.00 39.32 1.98
11 12 1.452108 AAACTGCGCCCTGGCTATC 60.452 57.895 4.18 0.00 39.32 2.08
12 13 1.750399 CAAACTGCGCCCTGGCTAT 60.750 57.895 4.18 0.00 39.32 2.97
13 14 2.359850 CAAACTGCGCCCTGGCTA 60.360 61.111 4.18 0.00 39.32 3.93
23 24 2.747855 CCCTCCTCGCCAAACTGC 60.748 66.667 0.00 0.00 0.00 4.40
24 25 1.672356 CACCCTCCTCGCCAAACTG 60.672 63.158 0.00 0.00 0.00 3.16
25 26 2.750350 CACCCTCCTCGCCAAACT 59.250 61.111 0.00 0.00 0.00 2.66
26 27 3.056328 GCACCCTCCTCGCCAAAC 61.056 66.667 0.00 0.00 0.00 2.93
27 28 3.565214 TGCACCCTCCTCGCCAAA 61.565 61.111 0.00 0.00 0.00 3.28
28 29 4.329545 GTGCACCCTCCTCGCCAA 62.330 66.667 5.22 0.00 0.00 4.52
30 31 4.101448 ATGTGCACCCTCCTCGCC 62.101 66.667 15.69 0.00 0.00 5.54
31 32 2.599645 ATCATGTGCACCCTCCTCGC 62.600 60.000 15.69 0.00 0.00 5.03
32 33 0.531532 GATCATGTGCACCCTCCTCG 60.532 60.000 15.69 0.00 0.00 4.63
33 34 0.179034 GGATCATGTGCACCCTCCTC 60.179 60.000 15.69 4.76 0.00 3.71
34 35 1.639635 GGGATCATGTGCACCCTCCT 61.640 60.000 15.69 0.00 39.28 3.69
35 36 1.152881 GGGATCATGTGCACCCTCC 60.153 63.158 15.69 14.01 39.28 4.30
36 37 1.524621 CGGGATCATGTGCACCCTC 60.525 63.158 15.69 5.49 40.12 4.30
37 38 2.300967 ACGGGATCATGTGCACCCT 61.301 57.895 15.69 0.00 40.12 4.34
38 39 2.114670 CACGGGATCATGTGCACCC 61.115 63.158 15.69 7.51 39.02 4.61
39 40 2.114670 CCACGGGATCATGTGCACC 61.115 63.158 15.69 0.00 34.77 5.01
40 41 2.114670 CCCACGGGATCATGTGCAC 61.115 63.158 10.75 10.75 37.50 4.57
41 42 2.271821 CCCACGGGATCATGTGCA 59.728 61.111 10.24 0.00 37.50 4.57
52 53 3.381136 CCAAACCATGCCCCACGG 61.381 66.667 0.00 0.00 0.00 4.94
53 54 4.067913 GCCAAACCATGCCCCACG 62.068 66.667 0.00 0.00 0.00 4.94
54 55 4.067913 CGCCAAACCATGCCCCAC 62.068 66.667 0.00 0.00 0.00 4.61
55 56 4.292145 TCGCCAAACCATGCCCCA 62.292 61.111 0.00 0.00 0.00 4.96
56 57 3.451894 CTCGCCAAACCATGCCCC 61.452 66.667 0.00 0.00 0.00 5.80
57 58 3.451894 CCTCGCCAAACCATGCCC 61.452 66.667 0.00 0.00 0.00 5.36
58 59 2.361104 TCCTCGCCAAACCATGCC 60.361 61.111 0.00 0.00 0.00 4.40
59 60 2.409870 CCTCCTCGCCAAACCATGC 61.410 63.158 0.00 0.00 0.00 4.06
60 61 1.750399 CCCTCCTCGCCAAACCATG 60.750 63.158 0.00 0.00 0.00 3.66
61 62 2.231380 ACCCTCCTCGCCAAACCAT 61.231 57.895 0.00 0.00 0.00 3.55
62 63 2.852075 ACCCTCCTCGCCAAACCA 60.852 61.111 0.00 0.00 0.00 3.67
63 64 2.359975 CACCCTCCTCGCCAAACC 60.360 66.667 0.00 0.00 0.00 3.27
64 65 3.056328 GCACCCTCCTCGCCAAAC 61.056 66.667 0.00 0.00 0.00 2.93
65 66 3.565214 TGCACCCTCCTCGCCAAA 61.565 61.111 0.00 0.00 0.00 3.28
66 67 4.329545 GTGCACCCTCCTCGCCAA 62.330 66.667 5.22 0.00 0.00 4.52
70 71 2.890847 GATCACGTGCACCCTCCTCG 62.891 65.000 11.67 0.00 0.00 4.63
71 72 1.153549 GATCACGTGCACCCTCCTC 60.154 63.158 11.67 0.00 0.00 3.71
72 73 2.660064 GGATCACGTGCACCCTCCT 61.660 63.158 11.67 0.00 0.00 3.69
73 74 2.125106 GGATCACGTGCACCCTCC 60.125 66.667 11.67 8.46 0.00 4.30
74 75 2.125106 GGGATCACGTGCACCCTC 60.125 66.667 29.50 14.53 39.28 4.30
75 76 4.082523 CGGGATCACGTGCACCCT 62.083 66.667 31.52 10.09 40.12 4.34
113 114 2.736889 TCGGAGCGAAAAAGGCAACTG 61.737 52.381 0.00 0.00 38.73 3.16
114 115 0.534203 TCGGAGCGAAAAAGGCAACT 60.534 50.000 0.00 0.00 41.00 3.16
115 116 0.385598 GTCGGAGCGAAAAAGGCAAC 60.386 55.000 0.00 0.00 37.72 4.17
116 117 1.837538 CGTCGGAGCGAAAAAGGCAA 61.838 55.000 0.00 0.00 37.72 4.52
117 118 2.314647 CGTCGGAGCGAAAAAGGCA 61.315 57.895 0.00 0.00 37.72 4.75
118 119 2.474712 CGTCGGAGCGAAAAAGGC 59.525 61.111 0.00 0.00 37.72 4.35
119 120 2.388232 CCCGTCGGAGCGAAAAAGG 61.388 63.158 14.39 0.00 37.72 3.11
120 121 3.023591 GCCCGTCGGAGCGAAAAAG 62.024 63.158 14.39 0.00 37.72 2.27
121 122 3.045492 GCCCGTCGGAGCGAAAAA 61.045 61.111 14.39 0.00 37.72 1.94
139 140 3.647771 GTGGTCCACCTGGTCCCC 61.648 72.222 11.30 0.00 41.82 4.81
140 141 4.016706 CGTGGTCCACCTGGTCCC 62.017 72.222 16.60 0.00 41.82 4.46
141 142 3.239253 ACGTGGTCCACCTGGTCC 61.239 66.667 16.60 0.00 42.66 4.46
142 143 2.030562 CACGTGGTCCACCTGGTC 59.969 66.667 16.60 0.00 36.82 4.02
143 144 3.556306 CCACGTGGTCCACCTGGT 61.556 66.667 26.95 12.26 36.36 4.00
144 145 4.329545 CCCACGTGGTCCACCTGG 62.330 72.222 31.80 25.48 39.22 4.45
161 162 4.699522 AAACAGTCCCCCGCTCGC 62.700 66.667 0.00 0.00 0.00 5.03
162 163 2.434359 GAAACAGTCCCCCGCTCG 60.434 66.667 0.00 0.00 0.00 5.03
163 164 2.046217 GGAAACAGTCCCCCGCTC 60.046 66.667 0.00 0.00 41.10 5.03
171 172 1.721926 CGAGCGAAAGAGGAAACAGTC 59.278 52.381 0.00 0.00 0.00 3.51
172 173 1.340248 TCGAGCGAAAGAGGAAACAGT 59.660 47.619 0.00 0.00 0.00 3.55
173 174 1.989165 CTCGAGCGAAAGAGGAAACAG 59.011 52.381 0.00 0.00 0.00 3.16
174 175 2.065993 CTCGAGCGAAAGAGGAAACA 57.934 50.000 0.00 0.00 0.00 2.83
180 181 2.496817 CCCCCTCGAGCGAAAGAG 59.503 66.667 6.99 0.00 0.00 2.85
200 201 1.339929 CCGAAAAAGGAAACCACCTGG 59.660 52.381 0.00 0.00 40.49 4.45
201 202 1.339929 CCCGAAAAAGGAAACCACCTG 59.660 52.381 0.00 0.00 40.49 4.00
202 203 1.063492 ACCCGAAAAAGGAAACCACCT 60.063 47.619 0.00 0.00 42.69 4.00
203 204 1.067974 CACCCGAAAAAGGAAACCACC 59.932 52.381 0.00 0.00 0.00 4.61
204 205 1.067974 CCACCCGAAAAAGGAAACCAC 59.932 52.381 0.00 0.00 0.00 4.16
205 206 1.404843 CCACCCGAAAAAGGAAACCA 58.595 50.000 0.00 0.00 0.00 3.67
206 207 0.032952 GCCACCCGAAAAAGGAAACC 59.967 55.000 0.00 0.00 0.00 3.27
207 208 0.032952 GGCCACCCGAAAAAGGAAAC 59.967 55.000 0.00 0.00 0.00 2.78
208 209 2.432119 GGCCACCCGAAAAAGGAAA 58.568 52.632 0.00 0.00 0.00 3.13
209 210 4.184439 GGCCACCCGAAAAAGGAA 57.816 55.556 0.00 0.00 0.00 3.36
227 228 2.030262 CTGGGATCGCTAGCCAGC 59.970 66.667 9.66 0.00 44.90 4.85
228 229 2.739784 CCTGGGATCGCTAGCCAG 59.260 66.667 9.66 9.91 30.46 4.85
229 230 2.844362 CCCTGGGATCGCTAGCCA 60.844 66.667 7.01 0.00 30.46 4.75
230 231 4.321966 GCCCTGGGATCGCTAGCC 62.322 72.222 19.27 0.00 0.00 3.93
231 232 4.671569 CGCCCTGGGATCGCTAGC 62.672 72.222 19.27 4.06 0.00 3.42
232 233 3.996124 CCGCCCTGGGATCGCTAG 61.996 72.222 19.27 6.76 0.00 3.42
256 257 2.775032 TTTGGACGCGTCTAGTGGGC 62.775 60.000 35.50 19.20 33.90 5.36
257 258 0.320073 TTTTGGACGCGTCTAGTGGG 60.320 55.000 35.50 0.00 33.90 4.61
258 259 1.504359 TTTTTGGACGCGTCTAGTGG 58.496 50.000 35.50 0.00 33.90 4.00
277 278 4.640647 GCGGTCAAGAAGGATAGGATTTTT 59.359 41.667 0.00 0.00 0.00 1.94
278 279 4.200092 GCGGTCAAGAAGGATAGGATTTT 58.800 43.478 0.00 0.00 0.00 1.82
279 280 3.433740 GGCGGTCAAGAAGGATAGGATTT 60.434 47.826 0.00 0.00 0.00 2.17
280 281 2.104963 GGCGGTCAAGAAGGATAGGATT 59.895 50.000 0.00 0.00 0.00 3.01
286 287 0.899720 TTACGGCGGTCAAGAAGGAT 59.100 50.000 13.24 0.00 0.00 3.24
419 421 2.417239 GACGGATCTAGAGCGTATGAGG 59.583 54.545 1.16 0.00 0.00 3.86
466 468 6.094325 ACAAAATACTAGAGGACTCGAGTCTG 59.906 42.308 36.98 26.14 43.00 3.51
481 483 9.116067 ACTTAGCAACACTTTGACAAAATACTA 57.884 29.630 1.62 0.00 34.24 1.82
495 497 1.000955 CCCAGTCGACTTAGCAACACT 59.999 52.381 17.26 0.00 0.00 3.55
512 514 4.390048 GGCACGACTAAAAGCCCA 57.610 55.556 0.00 0.00 41.25 5.36
570 573 1.373435 CCAGTAGGGACGGCAAACA 59.627 57.895 0.00 0.00 40.01 2.83
584 587 1.202976 AGGTGAAAGCAAGATGCCAGT 60.203 47.619 0.00 0.00 46.52 4.00
636 639 5.122519 ACATGGCAAACATCGTGATATACA 58.877 37.500 0.00 0.00 37.84 2.29
637 640 5.673337 ACATGGCAAACATCGTGATATAC 57.327 39.130 0.00 0.00 37.84 1.47
725 728 0.740868 GGATGCAGCACACTTCGCTA 60.741 55.000 3.51 0.00 37.72 4.26
732 735 2.464459 GGCTACGGATGCAGCACAC 61.464 63.158 3.51 0.00 39.63 3.82
734 737 2.176273 CAGGCTACGGATGCAGCAC 61.176 63.158 3.51 0.00 39.63 4.40
754 757 5.353400 GGTAACACTACAAGATTAGCAACCC 59.647 44.000 0.00 0.00 0.00 4.11
777 780 5.060662 TCGACTTGAACTACAGAATCTGG 57.939 43.478 15.38 0.00 35.51 3.86
840 861 8.435982 TGTCTACCCATGGAATTTTGAATTTTT 58.564 29.630 15.22 0.00 0.00 1.94
841 862 7.972301 TGTCTACCCATGGAATTTTGAATTTT 58.028 30.769 15.22 0.00 0.00 1.82
842 863 7.552050 TGTCTACCCATGGAATTTTGAATTT 57.448 32.000 15.22 0.00 0.00 1.82
844 865 5.127682 GCTGTCTACCCATGGAATTTTGAAT 59.872 40.000 15.22 0.00 0.00 2.57
845 866 4.462483 GCTGTCTACCCATGGAATTTTGAA 59.538 41.667 15.22 0.00 0.00 2.69
846 867 4.016444 GCTGTCTACCCATGGAATTTTGA 58.984 43.478 15.22 0.00 0.00 2.69
847 868 3.763360 TGCTGTCTACCCATGGAATTTTG 59.237 43.478 15.22 0.00 0.00 2.44
848 869 4.046286 TGCTGTCTACCCATGGAATTTT 57.954 40.909 15.22 0.00 0.00 1.82
856 958 3.788227 TCAGTTTTGCTGTCTACCCAT 57.212 42.857 0.00 0.00 45.23 4.00
869 971 7.378181 CAGCCATAAAACCAGTTATCAGTTTT 58.622 34.615 5.54 5.54 43.87 2.43
941 1043 7.095397 CCTCACACGAATCTGTACATTAACAAA 60.095 37.037 0.00 0.00 0.00 2.83
942 1044 6.367695 CCTCACACGAATCTGTACATTAACAA 59.632 38.462 0.00 0.00 0.00 2.83
993 1095 0.618458 TCACCTCAGCCATGGTAACC 59.382 55.000 14.67 0.00 34.79 2.85
994 1096 2.489938 TTCACCTCAGCCATGGTAAC 57.510 50.000 14.67 0.00 34.79 2.50
1036 1138 9.495572 ACAGAAACCAAAACATACAAAGAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
1041 1143 8.647143 ATTGACAGAAACCAAAACATACAAAG 57.353 30.769 0.00 0.00 0.00 2.77
1054 1156 4.995487 ACGGTAAGAGAATTGACAGAAACC 59.005 41.667 0.00 0.00 0.00 3.27
1055 1157 5.694910 TCACGGTAAGAGAATTGACAGAAAC 59.305 40.000 0.00 0.00 0.00 2.78
1060 1162 4.451096 GCTTTCACGGTAAGAGAATTGACA 59.549 41.667 0.00 0.00 29.86 3.58
1065 1167 6.407202 ACATTAGCTTTCACGGTAAGAGAAT 58.593 36.000 0.00 0.00 31.29 2.40
1076 1178 4.095036 GGGTTGCTAGACATTAGCTTTCAC 59.905 45.833 0.00 0.66 40.95 3.18
1093 1195 6.923508 GCATCCTATTACATAAAAAGGGTTGC 59.076 38.462 0.00 0.00 32.29 4.17
1099 1201 9.546909 CGCAATAGCATCCTATTACATAAAAAG 57.453 33.333 0.00 0.00 41.23 2.27
1109 1211 3.407424 TCAGCGCAATAGCATCCTATT 57.593 42.857 11.47 0.00 43.35 1.73
1110 1212 3.407424 TTCAGCGCAATAGCATCCTAT 57.593 42.857 11.47 0.00 42.27 2.57
1120 1222 3.067180 CCATTTAGTCCATTCAGCGCAAT 59.933 43.478 11.47 0.00 0.00 3.56
1125 1227 3.378427 GGTCACCATTTAGTCCATTCAGC 59.622 47.826 0.00 0.00 0.00 4.26
1128 1230 5.192927 TGATGGTCACCATTTAGTCCATTC 58.807 41.667 11.74 0.00 45.26 2.67
1143 1245 3.998913 TGAAACTGCCTATGATGGTCA 57.001 42.857 0.00 0.00 0.00 4.02
1148 1250 4.262635 CGGACCTATGAAACTGCCTATGAT 60.263 45.833 0.00 0.00 0.00 2.45
1163 1265 3.764218 AGAATCGGTATCACGGACCTAT 58.236 45.455 0.00 0.00 34.56 2.57
1170 1272 8.515473 TTTCATACATAAGAATCGGTATCACG 57.485 34.615 0.00 0.00 0.00 4.35
1194 1296 8.768397 GGATTATTTGGATTTTTACCTTCCCTT 58.232 33.333 0.00 0.00 0.00 3.95
1195 1297 7.904022 TGGATTATTTGGATTTTTACCTTCCCT 59.096 33.333 0.00 0.00 0.00 4.20
1204 1306 8.866970 ACAGCAATTGGATTATTTGGATTTTT 57.133 26.923 7.72 0.00 0.00 1.94
1218 1320 2.165437 GCCCGAAATAACAGCAATTGGA 59.835 45.455 7.72 0.00 0.00 3.53
1225 1327 3.002348 GTGACTATGCCCGAAATAACAGC 59.998 47.826 0.00 0.00 0.00 4.40
1299 1401 0.540365 ACTTGTGTGCCTCATTGGGG 60.540 55.000 0.00 0.00 36.00 4.96
1303 1405 3.769739 TCTGTACTTGTGTGCCTCATT 57.230 42.857 0.00 0.00 0.00 2.57
1304 1406 3.988976 ATCTGTACTTGTGTGCCTCAT 57.011 42.857 0.00 0.00 0.00 2.90
1375 1477 3.557686 GCCAAAAAGCCATGTCTTTCCAT 60.558 43.478 1.61 0.00 35.41 3.41
1497 1599 2.662006 ATCGCCCTGATACATCATCG 57.338 50.000 0.00 0.00 36.33 3.84
1501 1603 6.204688 TCATTTTGTAATCGCCCTGATACATC 59.795 38.462 0.00 0.00 35.84 3.06
1610 1713 7.652105 TGTTTCTCTACATGACTGTTTACAGAC 59.348 37.037 16.31 10.68 46.59 3.51
1619 1724 7.895975 TTGATCTTGTTTCTCTACATGACTG 57.104 36.000 0.00 0.00 35.74 3.51
1644 1749 5.332743 AGGTGTACAATCATGTCCCAATTT 58.667 37.500 0.00 0.00 41.05 1.82
1649 1760 3.279434 GGAAGGTGTACAATCATGTCCC 58.721 50.000 0.00 0.00 41.05 4.46
1704 1815 1.134729 ACCAACAAGTTGCCTTTGCTG 60.135 47.619 1.81 0.00 39.16 4.41
1781 1892 4.591072 CCTCCACAAAATTTTGGAAGGGTA 59.409 41.667 29.37 14.63 41.49 3.69
1783 1894 3.244526 CCCTCCACAAAATTTTGGAAGGG 60.245 47.826 31.67 31.67 41.49 3.95
1784 1895 3.244526 CCCCTCCACAAAATTTTGGAAGG 60.245 47.826 29.37 27.48 41.49 3.46
1952 2070 2.090267 AGAAGGCTCCATATCCTCAGGT 60.090 50.000 0.00 0.00 0.00 4.00
1979 2097 4.023980 TCAAGTCATACGATTCTCAGGGT 58.976 43.478 0.00 0.00 0.00 4.34
1991 2109 5.238583 GGTATGCCTACCATCAAGTCATAC 58.761 45.833 12.84 0.00 45.88 2.39
2025 2143 3.387397 TCGTCAGAGATTATGCATGCTG 58.613 45.455 20.33 6.09 0.00 4.41
2026 2144 3.740631 TCGTCAGAGATTATGCATGCT 57.259 42.857 20.33 7.07 0.00 3.79
2043 2161 4.864247 GCAATGTCAAAATAAGGCAATCGT 59.136 37.500 0.00 0.00 0.00 3.73
2068 2186 4.462834 CCCTGCAAGATGATGATTATGCAT 59.537 41.667 3.79 3.79 42.25 3.96
2069 2187 3.824443 CCCTGCAAGATGATGATTATGCA 59.176 43.478 5.86 5.86 41.08 3.96
2070 2188 3.367087 GCCCTGCAAGATGATGATTATGC 60.367 47.826 0.00 0.00 34.07 3.14
2071 2189 3.192844 GGCCCTGCAAGATGATGATTATG 59.807 47.826 0.00 0.00 34.07 1.90
2072 2190 3.428532 GGCCCTGCAAGATGATGATTAT 58.571 45.455 0.00 0.00 34.07 1.28
2083 2201 2.906897 ACACAACGGCCCTGCAAG 60.907 61.111 0.00 0.00 0.00 4.01
2087 2205 1.172180 ATGTTCACACAACGGCCCTG 61.172 55.000 0.00 0.00 36.16 4.45
2093 2211 3.303990 CCTTCCTTCATGTTCACACAACG 60.304 47.826 0.00 0.00 36.16 4.10
2095 2213 2.622942 GCCTTCCTTCATGTTCACACAA 59.377 45.455 0.00 0.00 36.16 3.33
2105 2223 0.255318 CTCTGGCTGCCTTCCTTCAT 59.745 55.000 21.03 0.00 0.00 2.57
2107 2225 1.748500 GCTCTGGCTGCCTTCCTTC 60.749 63.158 21.03 0.53 35.22 3.46
2108 2226 1.860944 ATGCTCTGGCTGCCTTCCTT 61.861 55.000 21.03 1.49 39.59 3.36
2110 2228 1.379576 AATGCTCTGGCTGCCTTCC 60.380 57.895 21.03 6.27 39.59 3.46
2116 2240 1.336517 CCAACAACAATGCTCTGGCTG 60.337 52.381 0.00 0.00 39.59 4.85
2117 2241 0.963962 CCAACAACAATGCTCTGGCT 59.036 50.000 0.00 0.00 39.59 4.75
2125 2249 5.231991 GCTACACAAGAAACCAACAACAATG 59.768 40.000 0.00 0.00 0.00 2.82
2151 2275 5.552870 AGAAACAGTCAAGGAGAAGCTAA 57.447 39.130 0.00 0.00 0.00 3.09
2183 2307 6.184580 TGCTACATACAATGTTTAAACGGG 57.815 37.500 13.45 7.81 41.63 5.28
2190 2314 6.873076 CCAACCAAATGCTACATACAATGTTT 59.127 34.615 0.00 0.00 41.63 2.83
2194 2318 5.480073 ACACCAACCAAATGCTACATACAAT 59.520 36.000 0.00 0.00 0.00 2.71
2195 2319 4.830046 ACACCAACCAAATGCTACATACAA 59.170 37.500 0.00 0.00 0.00 2.41
2197 2321 5.160641 CAACACCAACCAAATGCTACATAC 58.839 41.667 0.00 0.00 0.00 2.39
2199 2323 3.640967 ACAACACCAACCAAATGCTACAT 59.359 39.130 0.00 0.00 0.00 2.29
2201 2325 3.726291 ACAACACCAACCAAATGCTAC 57.274 42.857 0.00 0.00 0.00 3.58
2202 2326 4.688021 GAAACAACACCAACCAAATGCTA 58.312 39.130 0.00 0.00 0.00 3.49
2203 2327 3.530535 GAAACAACACCAACCAAATGCT 58.469 40.909 0.00 0.00 0.00 3.79
2225 2349 4.130286 ACATAGTGAAGGAGCTTGTAGC 57.870 45.455 0.00 0.00 42.84 3.58
2227 2351 6.852420 AGTTACATAGTGAAGGAGCTTGTA 57.148 37.500 0.00 0.00 0.00 2.41
2228 2352 5.746990 AGTTACATAGTGAAGGAGCTTGT 57.253 39.130 0.00 0.00 0.00 3.16
2256 2382 0.111061 AAGATTGGACCACAGCAGCA 59.889 50.000 0.00 0.00 0.00 4.41
2257 2383 1.068055 CAAAGATTGGACCACAGCAGC 60.068 52.381 0.00 0.00 0.00 5.25
2272 2398 4.009675 CAAATGCCCTGCTACTACAAAGA 58.990 43.478 0.00 0.00 0.00 2.52
2293 2420 5.928264 CGCTGTTATATCAGATTGGATCACA 59.072 40.000 13.87 0.00 37.61 3.58
2294 2421 5.928839 ACGCTGTTATATCAGATTGGATCAC 59.071 40.000 13.87 0.00 37.61 3.06
2295 2422 6.101650 ACGCTGTTATATCAGATTGGATCA 57.898 37.500 13.87 0.00 37.61 2.92
2296 2423 6.090088 GTGACGCTGTTATATCAGATTGGATC 59.910 42.308 13.87 0.00 37.61 3.36
2297 2424 5.928839 GTGACGCTGTTATATCAGATTGGAT 59.071 40.000 13.87 0.00 37.61 3.41
2298 2425 5.163457 TGTGACGCTGTTATATCAGATTGGA 60.163 40.000 13.87 0.00 37.61 3.53
2299 2426 5.049828 TGTGACGCTGTTATATCAGATTGG 58.950 41.667 13.87 3.48 37.61 3.16
2300 2427 6.775939 ATGTGACGCTGTTATATCAGATTG 57.224 37.500 13.87 5.98 37.61 2.67
2301 2428 7.792374 AAATGTGACGCTGTTATATCAGATT 57.208 32.000 13.87 2.40 36.82 2.40
2302 2429 7.280876 ACAAAATGTGACGCTGTTATATCAGAT 59.719 33.333 13.87 2.12 37.61 2.90
2303 2430 6.593770 ACAAAATGTGACGCTGTTATATCAGA 59.406 34.615 13.87 0.00 37.61 3.27
2304 2431 6.775088 ACAAAATGTGACGCTGTTATATCAG 58.225 36.000 6.46 6.46 38.35 2.90
2305 2432 6.735678 ACAAAATGTGACGCTGTTATATCA 57.264 33.333 0.00 0.00 0.00 2.15
2306 2433 8.388103 AGTAACAAAATGTGACGCTGTTATATC 58.612 33.333 2.95 0.00 36.82 1.63
2307 2434 8.263940 AGTAACAAAATGTGACGCTGTTATAT 57.736 30.769 2.95 0.00 36.82 0.86
2308 2435 7.661127 AGTAACAAAATGTGACGCTGTTATA 57.339 32.000 2.95 0.00 36.82 0.98
2309 2436 6.554334 AGTAACAAAATGTGACGCTGTTAT 57.446 33.333 2.95 0.00 36.82 1.89
2310 2437 5.994887 AGTAACAAAATGTGACGCTGTTA 57.005 34.783 0.00 0.00 36.82 2.41
2311 2438 4.893424 AGTAACAAAATGTGACGCTGTT 57.107 36.364 0.00 0.00 36.82 3.16
2312 2439 4.497340 CCAAGTAACAAAATGTGACGCTGT 60.497 41.667 0.00 0.00 36.82 4.40
2313 2440 3.974401 CCAAGTAACAAAATGTGACGCTG 59.026 43.478 0.00 0.00 36.82 5.18
2314 2441 3.630312 ACCAAGTAACAAAATGTGACGCT 59.370 39.130 0.00 0.00 36.82 5.07
2315 2442 3.959943 ACCAAGTAACAAAATGTGACGC 58.040 40.909 0.00 0.00 36.82 5.19
2316 2443 5.574082 TCAACCAAGTAACAAAATGTGACG 58.426 37.500 0.00 0.00 36.82 4.35
2317 2444 7.491048 ACAATCAACCAAGTAACAAAATGTGAC 59.509 33.333 0.00 0.00 31.69 3.67
2318 2445 7.490725 CACAATCAACCAAGTAACAAAATGTGA 59.509 33.333 0.00 0.00 35.23 3.58
2319 2446 7.490725 TCACAATCAACCAAGTAACAAAATGTG 59.509 33.333 0.00 0.00 34.73 3.21
2320 2447 7.551585 TCACAATCAACCAAGTAACAAAATGT 58.448 30.769 0.00 0.00 0.00 2.71
2321 2448 8.417780 TTCACAATCAACCAAGTAACAAAATG 57.582 30.769 0.00 0.00 0.00 2.32
2322 2449 8.257306 ACTTCACAATCAACCAAGTAACAAAAT 58.743 29.630 0.00 0.00 0.00 1.82
2323 2450 7.543868 CACTTCACAATCAACCAAGTAACAAAA 59.456 33.333 0.00 0.00 0.00 2.44
2324 2451 7.032580 CACTTCACAATCAACCAAGTAACAAA 58.967 34.615 0.00 0.00 0.00 2.83
2325 2452 6.375736 TCACTTCACAATCAACCAAGTAACAA 59.624 34.615 0.00 0.00 0.00 2.83
2326 2453 5.883115 TCACTTCACAATCAACCAAGTAACA 59.117 36.000 0.00 0.00 0.00 2.41
2327 2454 6.260050 TCTCACTTCACAATCAACCAAGTAAC 59.740 38.462 0.00 0.00 0.00 2.50
2328 2455 6.353323 TCTCACTTCACAATCAACCAAGTAA 58.647 36.000 0.00 0.00 0.00 2.24
2329 2456 5.924356 TCTCACTTCACAATCAACCAAGTA 58.076 37.500 0.00 0.00 0.00 2.24
2330 2457 4.780815 TCTCACTTCACAATCAACCAAGT 58.219 39.130 0.00 0.00 0.00 3.16
2331 2458 5.954296 ATCTCACTTCACAATCAACCAAG 57.046 39.130 0.00 0.00 0.00 3.61
2332 2459 7.121168 GGATAATCTCACTTCACAATCAACCAA 59.879 37.037 0.00 0.00 0.00 3.67
2333 2460 6.599244 GGATAATCTCACTTCACAATCAACCA 59.401 38.462 0.00 0.00 0.00 3.67
2334 2461 6.599244 TGGATAATCTCACTTCACAATCAACC 59.401 38.462 0.00 0.00 0.00 3.77
2335 2462 7.335422 ACTGGATAATCTCACTTCACAATCAAC 59.665 37.037 0.00 0.00 0.00 3.18
2336 2463 7.397221 ACTGGATAATCTCACTTCACAATCAA 58.603 34.615 0.00 0.00 0.00 2.57
2337 2464 6.950842 ACTGGATAATCTCACTTCACAATCA 58.049 36.000 0.00 0.00 0.00 2.57
2338 2465 7.044181 TGACTGGATAATCTCACTTCACAATC 58.956 38.462 0.00 0.00 0.00 2.67
2360 2487 2.740981 CTGGATCACAGCTCAACTTGAC 59.259 50.000 0.00 0.00 40.97 3.18
2373 2500 2.169561 GGAGAGGGAGAAACTGGATCAC 59.830 54.545 0.00 0.00 0.00 3.06
2382 2509 5.860648 AAATTAACCAGGAGAGGGAGAAA 57.139 39.130 0.00 0.00 0.00 2.52
2389 2516 9.892130 AACAGAAGTATAAATTAACCAGGAGAG 57.108 33.333 0.00 0.00 0.00 3.20
2390 2517 9.667107 CAACAGAAGTATAAATTAACCAGGAGA 57.333 33.333 0.00 0.00 0.00 3.71
2393 2522 9.840427 CAACAACAGAAGTATAAATTAACCAGG 57.160 33.333 0.00 0.00 0.00 4.45
2408 2537 4.159506 TGGGAAAGGAAACAACAACAGAAG 59.840 41.667 0.00 0.00 0.00 2.85
2411 2540 3.447229 AGTGGGAAAGGAAACAACAACAG 59.553 43.478 0.00 0.00 0.00 3.16
2415 2544 5.068460 CACATAAGTGGGAAAGGAAACAACA 59.932 40.000 0.00 0.00 42.13 3.33
2495 2624 5.628200 GCACAATCTTACACTGGGGTATGTA 60.628 44.000 0.00 0.00 0.00 2.29
2498 2627 3.523564 AGCACAATCTTACACTGGGGTAT 59.476 43.478 0.00 0.00 0.00 2.73
2499 2628 2.910319 AGCACAATCTTACACTGGGGTA 59.090 45.455 0.00 0.00 0.00 3.69
2500 2629 1.705186 AGCACAATCTTACACTGGGGT 59.295 47.619 0.00 0.00 0.00 4.95
2501 2630 2.086869 CAGCACAATCTTACACTGGGG 58.913 52.381 0.00 0.00 0.00 4.96
2502 2631 2.086869 CCAGCACAATCTTACACTGGG 58.913 52.381 0.00 0.00 40.80 4.45
2504 2633 3.402110 TCACCAGCACAATCTTACACTG 58.598 45.455 0.00 0.00 0.00 3.66
2505 2634 3.769739 TCACCAGCACAATCTTACACT 57.230 42.857 0.00 0.00 0.00 3.55
2506 2635 3.426695 GCATCACCAGCACAATCTTACAC 60.427 47.826 0.00 0.00 0.00 2.90
2507 2636 2.749076 GCATCACCAGCACAATCTTACA 59.251 45.455 0.00 0.00 0.00 2.41
2508 2637 3.012518 AGCATCACCAGCACAATCTTAC 58.987 45.455 0.00 0.00 0.00 2.34
2509 2638 3.354948 AGCATCACCAGCACAATCTTA 57.645 42.857 0.00 0.00 0.00 2.10
2510 2639 2.211250 AGCATCACCAGCACAATCTT 57.789 45.000 0.00 0.00 0.00 2.40
2511 2640 2.211250 AAGCATCACCAGCACAATCT 57.789 45.000 0.00 0.00 0.00 2.40
2512 2641 2.357009 CCTAAGCATCACCAGCACAATC 59.643 50.000 0.00 0.00 0.00 2.67
2597 2726 5.612725 TGATGGACATATGAGCAGTGTTA 57.387 39.130 10.38 0.00 0.00 2.41
2598 2727 4.492494 TGATGGACATATGAGCAGTGTT 57.508 40.909 10.38 0.00 0.00 3.32
2599 2728 4.701651 ATGATGGACATATGAGCAGTGT 57.298 40.909 10.38 0.00 37.46 3.55
2610 2739 8.551440 TGCCTAGCTAAATTATATGATGGACAT 58.449 33.333 0.00 0.00 42.39 3.06
2611 2740 7.917003 TGCCTAGCTAAATTATATGATGGACA 58.083 34.615 0.00 0.00 0.00 4.02
2612 2741 8.834465 CATGCCTAGCTAAATTATATGATGGAC 58.166 37.037 0.00 0.00 0.00 4.02
2613 2742 8.551440 ACATGCCTAGCTAAATTATATGATGGA 58.449 33.333 0.00 0.00 0.00 3.41
2614 2743 8.743085 ACATGCCTAGCTAAATTATATGATGG 57.257 34.615 0.00 0.00 0.00 3.51
2615 2744 9.999009 CAACATGCCTAGCTAAATTATATGATG 57.001 33.333 0.00 0.00 0.00 3.07
2616 2745 9.964354 TCAACATGCCTAGCTAAATTATATGAT 57.036 29.630 0.00 0.00 0.00 2.45
2617 2746 9.440773 CTCAACATGCCTAGCTAAATTATATGA 57.559 33.333 0.00 0.00 0.00 2.15
2632 2761 1.531423 CAAGTCAGCTCAACATGCCT 58.469 50.000 0.00 0.00 0.00 4.75
2657 2786 1.799258 GCTCACAGCCAAACCACTGG 61.799 60.000 0.00 0.00 38.25 4.00
2658 2787 0.820891 AGCTCACAGCCAAACCACTG 60.821 55.000 0.00 0.00 43.77 3.66
2676 2805 1.935873 CTATGCATTCGGTCACACCAG 59.064 52.381 3.54 0.00 38.47 4.00
2677 2806 1.277842 ACTATGCATTCGGTCACACCA 59.722 47.619 3.54 0.00 38.47 4.17
2686 2815 4.330894 ACATGTGACAGAACTATGCATTCG 59.669 41.667 3.54 0.00 0.00 3.34
2713 2842 8.622157 CACTTCTTCAGCATCTATGAAAATGAT 58.378 33.333 0.00 0.00 36.30 2.45
2714 2843 7.414873 GCACTTCTTCAGCATCTATGAAAATGA 60.415 37.037 0.00 0.00 36.30 2.57
2715 2844 6.691818 GCACTTCTTCAGCATCTATGAAAATG 59.308 38.462 0.00 0.00 36.30 2.32
2716 2845 6.183360 GGCACTTCTTCAGCATCTATGAAAAT 60.183 38.462 0.00 0.00 36.30 1.82
2717 2846 5.124457 GGCACTTCTTCAGCATCTATGAAAA 59.876 40.000 0.00 0.00 36.30 2.29
2718 2847 4.637534 GGCACTTCTTCAGCATCTATGAAA 59.362 41.667 0.00 0.00 36.30 2.69
2719 2848 4.194640 GGCACTTCTTCAGCATCTATGAA 58.805 43.478 0.00 0.00 35.45 2.57
2740 2902 2.159653 CCGCAACTCAAAGAATTCTCGG 60.160 50.000 8.78 10.71 0.00 4.63
2741 2903 2.480419 ACCGCAACTCAAAGAATTCTCG 59.520 45.455 8.78 5.24 0.00 4.04
2777 2939 5.798125 TTTGAGTAACATCCATTTTGGCA 57.202 34.783 0.00 0.00 37.47 4.92
2842 3007 7.744276 TGTGATATCGTTTTCGTTTTCAATGAG 59.256 33.333 0.00 0.00 44.46 2.90
2886 3086 8.773404 TTTTTGGAATTTTAACTCGGTTTTCA 57.227 26.923 0.00 0.00 0.00 2.69
2892 3092 8.702163 AGCATATTTTTGGAATTTTAACTCGG 57.298 30.769 0.00 0.00 0.00 4.63
2915 3115 4.685169 TGCTCTGTTATTTGCTGTTAGC 57.315 40.909 0.00 0.00 42.82 3.09
2941 3143 4.013050 ACTTGGAGAAGCTCTTTAATGCC 58.987 43.478 0.00 0.00 31.68 4.40
2952 3154 1.538047 TTGATGCCACTTGGAGAAGC 58.462 50.000 0.00 0.00 37.39 3.86
2953 3155 2.229784 GGTTTGATGCCACTTGGAGAAG 59.770 50.000 0.00 0.00 37.39 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.