Multiple sequence alignment - TraesCS3A01G068100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G068100 chr3A 100.000 3941 0 0 1 3941 40912403 40916343 0.000000e+00 7278.0
1 TraesCS3A01G068100 chr3A 88.379 327 33 5 2792 3116 41602366 41602689 4.780000e-104 388.0
2 TraesCS3A01G068100 chr3A 81.279 438 53 17 2843 3261 41627884 41628311 1.060000e-85 327.0
3 TraesCS3A01G068100 chr3A 83.942 274 27 5 2762 3032 41281456 41281715 3.040000e-61 246.0
4 TraesCS3A01G068100 chr3A 85.714 210 7 6 3309 3496 41628400 41628608 2.400000e-47 200.0
5 TraesCS3A01G068100 chr3A 94.048 84 5 0 3312 3395 41602910 41602993 1.150000e-25 128.0
6 TraesCS3A01G068100 chr3B 90.388 1238 61 22 855 2049 51224970 51226192 0.000000e+00 1574.0
7 TraesCS3A01G068100 chr3B 92.133 1055 46 7 2651 3683 51226607 51227646 0.000000e+00 1454.0
8 TraesCS3A01G068100 chr3B 91.612 1061 48 10 2651 3683 51945744 51946791 0.000000e+00 1428.0
9 TraesCS3A01G068100 chr3B 85.540 982 77 28 680 1635 51944123 51945065 0.000000e+00 966.0
10 TraesCS3A01G068100 chr3B 94.805 462 19 3 2773 3234 52434716 52435172 0.000000e+00 715.0
11 TraesCS3A01G068100 chr3B 81.719 919 79 36 2651 3495 51731285 51732188 0.000000e+00 684.0
12 TraesCS3A01G068100 chr3B 87.860 486 21 16 3226 3683 52435355 52435830 1.610000e-148 536.0
13 TraesCS3A01G068100 chr3B 82.783 575 67 21 1080 1635 496063064 496063625 5.920000e-133 484.0
14 TraesCS3A01G068100 chr3B 88.832 394 20 8 3312 3683 52779022 52778631 2.770000e-126 462.0
15 TraesCS3A01G068100 chr3B 86.053 380 39 11 32 403 51220854 51221227 2.850000e-106 396.0
16 TraesCS3A01G068100 chr3B 87.742 310 17 9 2196 2492 52431452 52431753 3.770000e-90 342.0
17 TraesCS3A01G068100 chr3B 86.971 307 21 8 2046 2337 496063952 496064254 1.060000e-85 327.0
18 TraesCS3A01G068100 chr3B 89.259 270 11 7 1799 2050 51945065 51945334 4.910000e-84 322.0
19 TraesCS3A01G068100 chr3B 84.661 339 24 14 1311 1635 52430678 52431002 2.960000e-81 313.0
20 TraesCS3A01G068100 chr3B 86.093 302 20 17 2889 3183 52787076 52786790 4.950000e-79 305.0
21 TraesCS3A01G068100 chr3B 98.204 167 3 0 2488 2654 190902128 190901962 3.850000e-75 292.0
22 TraesCS3A01G068100 chr3B 86.121 281 15 7 976 1247 52430399 52430664 8.340000e-72 281.0
23 TraesCS3A01G068100 chr3B 87.755 245 6 6 2248 2492 51226391 51226611 8.400000e-67 265.0
24 TraesCS3A01G068100 chr3B 96.203 158 5 1 2046 2202 51226229 51226386 1.410000e-64 257.0
25 TraesCS3A01G068100 chr3B 86.939 245 8 6 2248 2492 51945528 51945748 1.820000e-63 254.0
26 TraesCS3A01G068100 chr3B 92.357 157 9 2 2046 2202 51945370 51945523 1.840000e-53 220.0
27 TraesCS3A01G068100 chr3B 97.638 127 3 0 2651 2777 52431749 52431875 6.630000e-53 219.0
28 TraesCS3A01G068100 chr3B 85.246 122 8 2 1938 2050 52431185 52431305 2.490000e-22 117.0
29 TraesCS3A01G068100 chr3B 76.316 228 26 13 606 824 51223048 51223256 3.240000e-16 97.1
30 TraesCS3A01G068100 chr3B 97.436 39 1 0 8 46 51220800 51220838 2.540000e-07 67.6
31 TraesCS3A01G068100 chr3B 100.000 32 0 0 579 610 51221227 51221258 4.250000e-05 60.2
32 TraesCS3A01G068100 chr3D 81.750 1063 89 52 606 1635 29967158 29968148 0.000000e+00 791.0
33 TraesCS3A01G068100 chr3D 84.236 628 63 20 2651 3256 29968899 29969512 2.640000e-161 579.0
34 TraesCS3A01G068100 chr3D 87.000 300 17 10 2196 2482 29968590 29968880 6.350000e-83 318.0
35 TraesCS3A01G068100 chr3D 90.164 244 18 3 2843 3086 30063090 30063327 2.960000e-81 313.0
36 TraesCS3A01G068100 chr3D 97.647 170 4 0 2484 2653 396430163 396430332 3.850000e-75 292.0
37 TraesCS3A01G068100 chr3D 93.233 133 5 1 3309 3437 30063494 30063626 4.020000e-45 193.0
38 TraesCS3A01G068100 chr3D 90.152 132 3 5 2046 2169 29968478 29968607 3.150000e-36 163.0
39 TraesCS3A01G068100 chr3D 94.048 84 4 1 3312 3395 29969609 29969691 4.130000e-25 126.0
40 TraesCS3A01G068100 chr2A 91.273 275 19 3 3668 3941 90214893 90215163 1.730000e-98 370.0
41 TraesCS3A01G068100 chr2A 81.188 101 14 4 428 528 674155560 674155655 4.220000e-10 76.8
42 TraesCS3A01G068100 chr5D 98.235 170 3 0 2484 2653 60139741 60139910 8.280000e-77 298.0
43 TraesCS3A01G068100 chr5D 87.023 131 14 2 3811 3938 231634093 231634223 1.140000e-30 145.0
44 TraesCS3A01G068100 chr2D 97.633 169 4 0 2484 2652 26502401 26502233 1.390000e-74 291.0
45 TraesCS3A01G068100 chr2D 97.590 166 4 0 2488 2653 595489434 595489269 6.450000e-73 285.0
46 TraesCS3A01G068100 chr2D 94.944 178 7 2 2478 2654 180883365 180883189 1.080000e-70 278.0
47 TraesCS3A01G068100 chr2D 94.886 176 9 0 2479 2654 288620465 288620640 3.880000e-70 276.0
48 TraesCS3A01G068100 chr7A 96.000 175 6 1 2486 2659 77161730 77161556 2.320000e-72 283.0
49 TraesCS3A01G068100 chr7A 83.636 275 38 4 3667 3938 80437098 80436828 6.540000e-63 252.0
50 TraesCS3A01G068100 chr4D 95.977 174 6 1 2484 2657 121073708 121073536 8.340000e-72 281.0
51 TraesCS3A01G068100 chr6D 85.036 274 34 3 3668 3938 80330506 80330237 5.020000e-69 272.0
52 TraesCS3A01G068100 chr7B 84.559 272 36 2 3670 3938 641550967 641550699 8.400000e-67 265.0
53 TraesCS3A01G068100 chr5A 84.364 275 36 4 3667 3938 437921080 437920810 3.020000e-66 263.0
54 TraesCS3A01G068100 chr5A 82.909 275 40 4 3667 3938 298195092 298195362 1.420000e-59 241.0
55 TraesCS3A01G068100 chr5B 84.116 277 37 4 3668 3941 94898866 94898594 1.090000e-65 261.0
56 TraesCS3A01G068100 chr7D 87.786 131 13 2 3811 3938 298290809 298290679 2.450000e-32 150.0
57 TraesCS3A01G068100 chrUn 97.143 35 1 0 428 462 230803713 230803747 4.250000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G068100 chr3A 40912403 40916343 3940 False 7278.000000 7278 100.000000 1 3941 1 chr3A.!!$F1 3940
1 TraesCS3A01G068100 chr3A 41627884 41628608 724 False 263.500000 327 83.496500 2843 3496 2 chr3A.!!$F4 653
2 TraesCS3A01G068100 chr3A 41602366 41602993 627 False 258.000000 388 91.213500 2792 3395 2 chr3A.!!$F3 603
3 TraesCS3A01G068100 chr3B 51731285 51732188 903 False 684.000000 684 81.719000 2651 3495 1 chr3B.!!$F1 844
4 TraesCS3A01G068100 chr3B 51944123 51946791 2668 False 638.000000 1428 89.141400 680 3683 5 chr3B.!!$F3 3003
5 TraesCS3A01G068100 chr3B 51220800 51227646 6846 False 521.362500 1574 90.785500 8 3683 8 chr3B.!!$F2 3675
6 TraesCS3A01G068100 chr3B 496063064 496064254 1190 False 405.500000 484 84.877000 1080 2337 2 chr3B.!!$F5 1257
7 TraesCS3A01G068100 chr3B 52430399 52435830 5431 False 360.428571 715 89.153286 976 3683 7 chr3B.!!$F4 2707
8 TraesCS3A01G068100 chr3D 29967158 29969691 2533 False 395.400000 791 87.437200 606 3395 5 chr3D.!!$F2 2789
9 TraesCS3A01G068100 chr3D 30063090 30063626 536 False 253.000000 313 91.698500 2843 3437 2 chr3D.!!$F3 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 568 0.178921 TATTTTGGGTTGGGCTGGCA 60.179 50.0 2.88 0.0 0.00 4.92 F
575 612 0.185901 TCAGCAAAAGAACTGGCCCT 59.814 50.0 0.00 0.0 34.57 5.19 F
2496 6241 0.036022 GCATGGCATCTACTCCCTCC 59.964 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2393 6125 0.668401 GCTTTGGTTGGCAGATGCAC 60.668 55.00 7.19 0.0 44.36 4.57 R
2529 6274 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.13 0.00 0.0 44.07 3.16 R
3826 10748 0.039074 GGATGGGCACGATAGACGAG 60.039 60.00 0.00 0.0 45.77 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.643792 AGGCTATGGTCGCTAAAAGAGAT 59.356 43.478 0.00 0.00 0.00 2.75
83 114 1.141053 AGATGTCGCTAATTGACCCCC 59.859 52.381 0.00 0.00 35.46 5.40
163 194 9.857656 ATCACTCCAACTGAATATATGACAATT 57.142 29.630 0.00 0.00 0.00 2.32
164 195 9.112725 TCACTCCAACTGAATATATGACAATTG 57.887 33.333 3.24 3.24 0.00 2.32
165 196 9.112725 CACTCCAACTGAATATATGACAATTGA 57.887 33.333 13.59 0.00 0.00 2.57
166 197 9.334947 ACTCCAACTGAATATATGACAATTGAG 57.665 33.333 13.59 0.00 0.00 3.02
168 199 9.685276 TCCAACTGAATATATGACAATTGAGTT 57.315 29.630 13.59 4.32 39.22 3.01
172 203 9.671279 ACTGAATATATGACAATTGAGTTGACA 57.329 29.630 13.59 0.00 44.30 3.58
177 208 4.730600 TGACAATTGAGTTGACATGACG 57.269 40.909 13.59 0.00 40.37 4.35
181 217 6.130298 ACAATTGAGTTGACATGACGAAAA 57.870 33.333 13.59 0.00 40.37 2.29
235 271 9.821662 GCTTTATTATAACGACTTTGAGTTTGT 57.178 29.630 0.00 0.00 0.00 2.83
258 294 3.655276 GTCACCTCGACAACCTTTAGA 57.345 47.619 0.00 0.00 44.69 2.10
259 295 3.315418 GTCACCTCGACAACCTTTAGAC 58.685 50.000 0.00 0.00 44.69 2.59
260 296 2.960384 TCACCTCGACAACCTTTAGACA 59.040 45.455 0.00 0.00 0.00 3.41
292 328 5.618056 AAATCATGCTTCATACGCTATGG 57.382 39.130 0.00 0.00 36.81 2.74
297 333 2.035961 TGCTTCATACGCTATGGAGACC 59.964 50.000 14.06 0.00 43.21 3.85
306 342 2.205074 GCTATGGAGACCACGAATGTG 58.795 52.381 0.00 0.00 46.00 3.21
319 355 2.159366 ACGAATGTGGCGAGTCTTCTAG 60.159 50.000 0.00 0.00 0.00 2.43
321 357 3.427638 CGAATGTGGCGAGTCTTCTAGAA 60.428 47.826 4.81 4.81 0.00 2.10
330 366 5.278758 GGCGAGTCTTCTAGAATTGCTCTAT 60.279 44.000 19.63 0.66 46.03 1.98
348 385 5.502153 TCTATGTTAGACGAAAGAGGAGC 57.498 43.478 0.00 0.00 0.00 4.70
366 403 3.244215 GGAGCGGATGATTGAATCCTACA 60.244 47.826 2.26 0.00 43.53 2.74
367 404 4.380531 GAGCGGATGATTGAATCCTACAA 58.619 43.478 2.26 0.00 43.53 2.41
368 405 4.978099 AGCGGATGATTGAATCCTACAAT 58.022 39.130 2.26 0.00 43.53 2.71
405 442 7.609532 AGAGATAGAAACATGCATAATTAGGGC 59.390 37.037 0.00 2.35 0.00 5.19
406 443 6.660949 AGATAGAAACATGCATAATTAGGGCC 59.339 38.462 0.00 0.00 0.00 5.80
407 444 4.545678 AGAAACATGCATAATTAGGGCCA 58.454 39.130 6.18 0.00 0.00 5.36
408 445 5.149976 AGAAACATGCATAATTAGGGCCAT 58.850 37.500 6.18 0.00 0.00 4.40
409 446 5.603813 AGAAACATGCATAATTAGGGCCATT 59.396 36.000 6.18 0.00 0.00 3.16
410 447 5.892524 AACATGCATAATTAGGGCCATTT 57.107 34.783 6.18 0.00 0.00 2.32
411 448 5.473066 ACATGCATAATTAGGGCCATTTC 57.527 39.130 6.18 0.00 0.00 2.17
412 449 5.149976 ACATGCATAATTAGGGCCATTTCT 58.850 37.500 6.18 0.00 0.00 2.52
413 450 5.603813 ACATGCATAATTAGGGCCATTTCTT 59.396 36.000 6.18 0.00 0.00 2.52
414 451 5.789643 TGCATAATTAGGGCCATTTCTTC 57.210 39.130 6.18 0.00 0.00 2.87
415 452 5.457686 TGCATAATTAGGGCCATTTCTTCT 58.542 37.500 6.18 0.00 0.00 2.85
416 453 5.302568 TGCATAATTAGGGCCATTTCTTCTG 59.697 40.000 6.18 0.00 0.00 3.02
417 454 5.776744 CATAATTAGGGCCATTTCTTCTGC 58.223 41.667 6.18 0.00 0.00 4.26
418 455 3.677156 ATTAGGGCCATTTCTTCTGCT 57.323 42.857 6.18 0.00 0.00 4.24
419 456 2.425143 TAGGGCCATTTCTTCTGCTG 57.575 50.000 6.18 0.00 0.00 4.41
420 457 0.324091 AGGGCCATTTCTTCTGCTGG 60.324 55.000 6.18 0.00 0.00 4.85
424 461 2.935481 CCATTTCTTCTGCTGGCTTC 57.065 50.000 0.00 0.00 0.00 3.86
425 462 2.444421 CCATTTCTTCTGCTGGCTTCT 58.556 47.619 0.00 0.00 0.00 2.85
426 463 3.614092 CCATTTCTTCTGCTGGCTTCTA 58.386 45.455 0.00 0.00 0.00 2.10
427 464 4.205587 CCATTTCTTCTGCTGGCTTCTAT 58.794 43.478 0.00 0.00 0.00 1.98
428 465 5.371526 CCATTTCTTCTGCTGGCTTCTATA 58.628 41.667 0.00 0.00 0.00 1.31
429 466 5.238214 CCATTTCTTCTGCTGGCTTCTATAC 59.762 44.000 0.00 0.00 0.00 1.47
430 467 4.408182 TTCTTCTGCTGGCTTCTATACC 57.592 45.455 0.00 0.00 0.00 2.73
431 468 3.647636 TCTTCTGCTGGCTTCTATACCT 58.352 45.455 0.00 0.00 0.00 3.08
432 469 4.804597 TCTTCTGCTGGCTTCTATACCTA 58.195 43.478 0.00 0.00 0.00 3.08
433 470 4.830046 TCTTCTGCTGGCTTCTATACCTAG 59.170 45.833 0.00 0.00 0.00 3.02
434 471 2.894126 TCTGCTGGCTTCTATACCTAGC 59.106 50.000 0.00 0.00 33.43 3.42
435 472 2.896685 CTGCTGGCTTCTATACCTAGCT 59.103 50.000 0.00 0.00 35.30 3.32
436 473 3.309296 TGCTGGCTTCTATACCTAGCTT 58.691 45.455 0.00 0.00 35.30 3.74
437 474 4.480115 TGCTGGCTTCTATACCTAGCTTA 58.520 43.478 0.00 0.00 35.30 3.09
438 475 5.087323 TGCTGGCTTCTATACCTAGCTTAT 58.913 41.667 0.00 0.00 35.30 1.73
439 476 5.544176 TGCTGGCTTCTATACCTAGCTTATT 59.456 40.000 0.00 0.00 35.30 1.40
440 477 6.103330 GCTGGCTTCTATACCTAGCTTATTC 58.897 44.000 0.00 0.00 35.30 1.75
441 478 6.071051 GCTGGCTTCTATACCTAGCTTATTCT 60.071 42.308 0.00 0.00 35.30 2.40
442 479 7.122948 GCTGGCTTCTATACCTAGCTTATTCTA 59.877 40.741 0.00 0.00 35.30 2.10
443 480 8.582657 TGGCTTCTATACCTAGCTTATTCTAG 57.417 38.462 0.00 0.00 36.63 2.43
444 481 8.391699 TGGCTTCTATACCTAGCTTATTCTAGA 58.608 37.037 0.00 0.00 38.61 2.43
445 482 9.245481 GGCTTCTATACCTAGCTTATTCTAGAA 57.755 37.037 7.82 7.82 38.61 2.10
497 534 8.991243 ACGTACTAATTAAAACATGACTAGCA 57.009 30.769 0.00 0.00 0.00 3.49
498 535 9.426837 ACGTACTAATTAAAACATGACTAGCAA 57.573 29.630 0.00 0.00 0.00 3.91
499 536 9.901724 CGTACTAATTAAAACATGACTAGCAAG 57.098 33.333 0.00 0.00 0.00 4.01
500 537 9.704098 GTACTAATTAAAACATGACTAGCAAGC 57.296 33.333 0.00 0.00 0.00 4.01
501 538 8.567285 ACTAATTAAAACATGACTAGCAAGCT 57.433 30.769 0.00 0.00 0.00 3.74
502 539 9.014297 ACTAATTAAAACATGACTAGCAAGCTT 57.986 29.630 0.00 0.00 0.00 3.74
503 540 9.846248 CTAATTAAAACATGACTAGCAAGCTTT 57.154 29.630 0.00 0.00 0.00 3.51
508 545 8.940768 AAAACATGACTAGCAAGCTTTTAAAA 57.059 26.923 0.00 0.00 0.00 1.52
509 546 8.940768 AAACATGACTAGCAAGCTTTTAAAAA 57.059 26.923 0.00 0.00 0.00 1.94
510 547 9.546428 AAACATGACTAGCAAGCTTTTAAAAAT 57.454 25.926 0.00 0.00 0.00 1.82
528 565 9.454859 TTTAAAAATATATTTTGGGTTGGGCTG 57.545 29.630 21.23 0.00 39.70 4.85
529 566 5.628797 AAATATATTTTGGGTTGGGCTGG 57.371 39.130 4.81 0.00 0.00 4.85
530 567 1.203237 ATATTTTGGGTTGGGCTGGC 58.797 50.000 0.00 0.00 0.00 4.85
531 568 0.178921 TATTTTGGGTTGGGCTGGCA 60.179 50.000 2.88 0.00 0.00 4.92
532 569 1.482748 ATTTTGGGTTGGGCTGGCAG 61.483 55.000 10.94 10.94 0.00 4.85
536 573 2.035626 GGTTGGGCTGGCAGCTTA 59.964 61.111 35.73 23.08 41.99 3.09
537 574 1.380380 GGTTGGGCTGGCAGCTTAT 60.380 57.895 35.73 0.00 41.99 1.73
538 575 0.972471 GGTTGGGCTGGCAGCTTATT 60.972 55.000 35.73 0.00 41.99 1.40
539 576 0.457443 GTTGGGCTGGCAGCTTATTC 59.543 55.000 35.73 20.26 41.99 1.75
540 577 0.332632 TTGGGCTGGCAGCTTATTCT 59.667 50.000 35.73 0.00 41.99 2.40
541 578 1.212375 TGGGCTGGCAGCTTATTCTA 58.788 50.000 35.73 16.27 41.99 2.10
542 579 1.141657 TGGGCTGGCAGCTTATTCTAG 59.858 52.381 35.73 0.00 41.99 2.43
543 580 1.417890 GGGCTGGCAGCTTATTCTAGA 59.582 52.381 35.73 0.00 41.99 2.43
544 581 2.158755 GGGCTGGCAGCTTATTCTAGAA 60.159 50.000 35.73 7.82 41.99 2.10
545 582 3.137533 GGCTGGCAGCTTATTCTAGAAG 58.862 50.000 35.73 0.00 41.99 2.85
573 610 3.391506 AAATCAGCAAAAGAACTGGCC 57.608 42.857 0.00 0.00 34.57 5.36
574 611 1.260544 ATCAGCAAAAGAACTGGCCC 58.739 50.000 0.00 0.00 34.57 5.80
575 612 0.185901 TCAGCAAAAGAACTGGCCCT 59.814 50.000 0.00 0.00 34.57 5.19
576 613 1.423541 TCAGCAAAAGAACTGGCCCTA 59.576 47.619 0.00 0.00 34.57 3.53
577 614 1.815003 CAGCAAAAGAACTGGCCCTAG 59.185 52.381 0.00 0.00 0.00 3.02
610 2441 5.297547 TCCGCTGGATCAATAAATGTAGTC 58.702 41.667 0.00 0.00 0.00 2.59
615 2446 6.619446 GCTGGATCAATAAATGTAGTCGATGC 60.619 42.308 0.00 0.00 0.00 3.91
619 2450 7.549134 GGATCAATAAATGTAGTCGATGCCATA 59.451 37.037 0.00 0.00 0.00 2.74
628 2459 2.158769 AGTCGATGCCATATTTCCTGCA 60.159 45.455 0.00 0.00 38.23 4.41
633 2464 3.370840 TGCCATATTTCCTGCACTTCT 57.629 42.857 0.00 0.00 0.00 2.85
661 2492 0.457035 GGTCAAGACGTACCGGCATA 59.543 55.000 0.00 0.00 37.34 3.14
662 2493 1.135024 GGTCAAGACGTACCGGCATAA 60.135 52.381 0.00 0.00 37.34 1.90
666 2497 4.443394 GTCAAGACGTACCGGCATAATTAG 59.557 45.833 0.00 0.00 37.34 1.73
668 2499 3.973657 AGACGTACCGGCATAATTAGTG 58.026 45.455 0.00 0.00 37.34 2.74
669 2500 3.633525 AGACGTACCGGCATAATTAGTGA 59.366 43.478 0.00 0.00 37.34 3.41
670 2501 3.973657 ACGTACCGGCATAATTAGTGAG 58.026 45.455 0.00 0.00 0.00 3.51
671 2502 3.382546 ACGTACCGGCATAATTAGTGAGT 59.617 43.478 0.00 0.00 0.00 3.41
673 2504 2.561569 ACCGGCATAATTAGTGAGTGC 58.438 47.619 0.00 0.26 35.17 4.40
675 2506 3.141398 CCGGCATAATTAGTGAGTGCAT 58.859 45.455 9.54 0.00 37.53 3.96
676 2507 3.187227 CCGGCATAATTAGTGAGTGCATC 59.813 47.826 9.54 0.00 37.53 3.91
677 2508 3.187227 CGGCATAATTAGTGAGTGCATCC 59.813 47.826 9.54 0.00 37.53 3.51
678 2509 3.187227 GGCATAATTAGTGAGTGCATCCG 59.813 47.826 9.54 0.00 37.53 4.18
685 2526 0.390340 GTGAGTGCATCCGCTGAAGA 60.390 55.000 0.00 0.00 39.64 2.87
697 2538 6.583806 GCATCCGCTGAAGATAAATAATTTGG 59.416 38.462 0.00 0.00 34.30 3.28
699 2540 7.259290 TCCGCTGAAGATAAATAATTTGGAC 57.741 36.000 0.00 0.00 0.00 4.02
731 2572 5.108385 ACGATGTTTCATCAGTTCCAAAC 57.892 39.130 9.81 0.00 0.00 2.93
736 2577 7.169645 CGATGTTTCATCAGTTCCAAACAAAAT 59.830 33.333 9.81 0.00 40.97 1.82
824 2665 1.531840 ATCCCCAGATCGACCTCGG 60.532 63.158 0.00 0.00 40.29 4.63
827 2668 2.835431 CCAGATCGACCTCGGCCT 60.835 66.667 0.00 0.00 40.29 5.19
828 2669 2.427245 CCAGATCGACCTCGGCCTT 61.427 63.158 0.00 0.00 40.29 4.35
831 2672 1.104577 AGATCGACCTCGGCCTTCTC 61.105 60.000 0.00 0.00 40.29 2.87
841 2682 3.069318 GCCTTCTCCGACCCGTCT 61.069 66.667 0.00 0.00 0.00 4.18
844 2688 0.966370 CCTTCTCCGACCCGTCTTCT 60.966 60.000 0.00 0.00 0.00 2.85
859 4383 3.915569 CGTCTTCTTCTTCTTCTTCGTCC 59.084 47.826 0.00 0.00 0.00 4.79
884 4415 6.253512 CACAAGAAAAGACGGAAAAAGGAAAG 59.746 38.462 0.00 0.00 0.00 2.62
905 4436 7.883833 GGAAAGTTCCTTCTCTTATTTACCACT 59.116 37.037 2.65 0.00 44.11 4.00
919 4454 2.474410 ACCACTCCATCCGAGAAAAC 57.526 50.000 0.00 0.00 41.63 2.43
922 4457 2.028112 CCACTCCATCCGAGAAAACAGA 60.028 50.000 0.00 0.00 41.63 3.41
924 4459 2.234908 ACTCCATCCGAGAAAACAGAGG 59.765 50.000 0.00 0.00 41.63 3.69
985 4520 3.535962 GCGAGGCCAGAGAGAGGG 61.536 72.222 5.01 0.00 0.00 4.30
1191 4759 2.101750 TCGATAGATGCGCCCTGTTTTA 59.898 45.455 4.18 0.00 42.67 1.52
1288 4856 4.482386 AGCGTATTGTACTGTACACTGTG 58.518 43.478 19.57 6.19 38.63 3.66
1313 4881 3.632604 AGTAGTAGCTGACGCACATGTAT 59.367 43.478 0.00 0.00 39.10 2.29
1368 4940 5.657826 TCTCTATGCTTATCATCAGAGCC 57.342 43.478 0.00 0.00 35.38 4.70
1407 4981 8.827177 AACGAGTTAAAGTGATTTGATCTGTA 57.173 30.769 0.00 0.00 0.00 2.74
1408 4982 8.827177 ACGAGTTAAAGTGATTTGATCTGTAA 57.173 30.769 0.00 0.00 0.00 2.41
1409 4983 8.709646 ACGAGTTAAAGTGATTTGATCTGTAAC 58.290 33.333 0.00 0.00 0.00 2.50
1410 4984 8.926710 CGAGTTAAAGTGATTTGATCTGTAACT 58.073 33.333 6.68 6.68 0.00 2.24
1412 4986 9.561069 AGTTAAAGTGATTTGATCTGTAACTGT 57.439 29.630 6.29 0.00 0.00 3.55
1534 5119 6.257411 GTGTCTATGACATCTCTTGTTCCATG 59.743 42.308 3.65 0.00 44.63 3.66
1566 5166 2.871096 TCTTAACCGATGCCAAACCT 57.129 45.000 0.00 0.00 0.00 3.50
1585 5185 6.944234 AACCTTAAACCTGAGAACAAGAAG 57.056 37.500 0.00 0.00 0.00 2.85
1635 5235 6.811253 TGTACATGTATTTGTGGAACTTCC 57.189 37.500 9.18 0.20 38.04 3.46
1653 5253 3.134127 AAGGGCGCGCTTGGAATC 61.134 61.111 35.29 12.21 0.00 2.52
1657 5257 2.052766 GCGCGCTTGGAATCGATG 60.053 61.111 26.67 0.00 0.00 3.84
1677 5277 6.263842 TCGATGTATTTAGATACGGAGGTGTT 59.736 38.462 0.00 0.00 40.85 3.32
1744 5344 0.389948 ATGAAACGACAGGCGGAGAC 60.390 55.000 0.00 0.00 46.49 3.36
1784 5384 6.812879 ACTGTATCTAAAAGAAAAACGGGG 57.187 37.500 0.00 0.00 0.00 5.73
1906 5535 6.460676 GCTGAATTTTCCATATCCCACTTCTG 60.461 42.308 0.00 0.00 0.00 3.02
1933 5563 0.790993 ACCCTCTGACTTCCCCTGTA 59.209 55.000 0.00 0.00 0.00 2.74
2393 6125 1.354368 ACAATGTAGAGGGTTGGGGTG 59.646 52.381 0.00 0.00 0.00 4.61
2431 6163 3.539604 AGCTGCAGTCATCTACCAAATC 58.460 45.455 16.64 0.00 0.00 2.17
2432 6164 3.199508 AGCTGCAGTCATCTACCAAATCT 59.800 43.478 16.64 0.00 0.00 2.40
2433 6165 3.311871 GCTGCAGTCATCTACCAAATCTG 59.688 47.826 16.64 0.00 0.00 2.90
2435 6167 2.615912 GCAGTCATCTACCAAATCTGCC 59.384 50.000 0.00 0.00 40.23 4.85
2436 6168 3.683847 GCAGTCATCTACCAAATCTGCCT 60.684 47.826 0.00 0.00 40.23 4.75
2437 6169 4.443457 GCAGTCATCTACCAAATCTGCCTA 60.443 45.833 0.00 0.00 40.23 3.93
2438 6170 5.744300 GCAGTCATCTACCAAATCTGCCTAT 60.744 44.000 0.00 0.00 40.23 2.57
2439 6171 6.519043 GCAGTCATCTACCAAATCTGCCTATA 60.519 42.308 0.00 0.00 40.23 1.31
2440 6172 7.619050 CAGTCATCTACCAAATCTGCCTATAT 58.381 38.462 0.00 0.00 0.00 0.86
2441 6173 8.753133 CAGTCATCTACCAAATCTGCCTATATA 58.247 37.037 0.00 0.00 0.00 0.86
2442 6174 8.976353 AGTCATCTACCAAATCTGCCTATATAG 58.024 37.037 2.46 2.46 0.00 1.31
2443 6175 8.972127 GTCATCTACCAAATCTGCCTATATAGA 58.028 37.037 11.53 0.00 0.00 1.98
2444 6176 8.972127 TCATCTACCAAATCTGCCTATATAGAC 58.028 37.037 11.53 0.00 0.00 2.59
2445 6177 8.976353 CATCTACCAAATCTGCCTATATAGACT 58.024 37.037 11.53 0.00 0.00 3.24
2446 6178 8.582657 TCTACCAAATCTGCCTATATAGACTC 57.417 38.462 11.53 1.17 0.00 3.36
2494 6239 2.935348 TGCATGGCATCTACTCCCT 58.065 52.632 0.00 0.00 31.71 4.20
2495 6240 0.761187 TGCATGGCATCTACTCCCTC 59.239 55.000 0.00 0.00 31.71 4.30
2496 6241 0.036022 GCATGGCATCTACTCCCTCC 59.964 60.000 0.00 0.00 0.00 4.30
2497 6242 0.319728 CATGGCATCTACTCCCTCCG 59.680 60.000 0.00 0.00 0.00 4.63
2498 6243 0.105453 ATGGCATCTACTCCCTCCGT 60.105 55.000 0.00 0.00 0.00 4.69
2499 6244 0.325296 TGGCATCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
2500 6245 0.389757 GGCATCTACTCCCTCCGTTC 59.610 60.000 0.00 0.00 0.00 3.95
2501 6246 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
2502 6247 0.669077 CATCTACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
2503 6248 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
2504 6249 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
2505 6250 1.180029 CTACTCCCTCCGTTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
2506 6251 1.755380 CTACTCCCTCCGTTCCGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
2507 6252 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2508 6253 2.395619 ACTCCCTCCGTTCCGAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
2509 6254 3.569491 ACTCCCTCCGTTCCGAAATATA 58.431 45.455 0.00 0.00 0.00 0.86
2510 6255 3.962718 ACTCCCTCCGTTCCGAAATATAA 59.037 43.478 0.00 0.00 0.00 0.98
2511 6256 4.038883 ACTCCCTCCGTTCCGAAATATAAG 59.961 45.833 0.00 0.00 0.00 1.73
2512 6257 3.962718 TCCCTCCGTTCCGAAATATAAGT 59.037 43.478 0.00 0.00 0.00 2.24
2513 6258 4.038402 TCCCTCCGTTCCGAAATATAAGTC 59.962 45.833 0.00 0.00 0.00 3.01
2514 6259 4.038883 CCCTCCGTTCCGAAATATAAGTCT 59.961 45.833 0.00 0.00 0.00 3.24
2515 6260 5.452917 CCCTCCGTTCCGAAATATAAGTCTT 60.453 44.000 0.00 0.00 0.00 3.01
2516 6261 6.047231 CCTCCGTTCCGAAATATAAGTCTTT 58.953 40.000 0.00 0.00 0.00 2.52
2517 6262 6.537660 CCTCCGTTCCGAAATATAAGTCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
2518 6263 7.065443 CCTCCGTTCCGAAATATAAGTCTTTTT 59.935 37.037 0.00 0.00 0.00 1.94
2519 6264 9.090692 CTCCGTTCCGAAATATAAGTCTTTTTA 57.909 33.333 0.00 0.00 0.00 1.52
2520 6265 9.090692 TCCGTTCCGAAATATAAGTCTTTTTAG 57.909 33.333 0.00 0.00 0.00 1.85
2521 6266 9.090692 CCGTTCCGAAATATAAGTCTTTTTAGA 57.909 33.333 0.00 0.00 0.00 2.10
2522 6267 9.897349 CGTTCCGAAATATAAGTCTTTTTAGAC 57.103 33.333 0.00 0.00 39.00 2.59
2535 6280 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
2536 6281 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
2541 6286 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
2542 6287 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
2543 6288 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
2544 6289 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
2545 6290 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
2546 6291 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
2547 6292 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
2548 6293 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
2549 6294 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
2550 6295 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
2552 6297 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
2553 6298 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
2591 6336 9.944376 TTAGAGTGTAGATTAACTCATTTTGCT 57.056 29.630 5.68 0.00 44.34 3.91
2592 6337 8.485976 AGAGTGTAGATTAACTCATTTTGCTC 57.514 34.615 5.68 0.00 44.34 4.26
2593 6338 7.550906 AGAGTGTAGATTAACTCATTTTGCTCC 59.449 37.037 5.68 0.00 44.34 4.70
2594 6339 6.313905 AGTGTAGATTAACTCATTTTGCTCCG 59.686 38.462 0.00 0.00 0.00 4.63
2595 6340 6.092259 GTGTAGATTAACTCATTTTGCTCCGT 59.908 38.462 0.00 0.00 0.00 4.69
2596 6341 7.277098 GTGTAGATTAACTCATTTTGCTCCGTA 59.723 37.037 0.00 0.00 0.00 4.02
2597 6342 7.985184 TGTAGATTAACTCATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
2598 6343 7.251704 AGATTAACTCATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2599 6344 6.823689 AGATTAACTCATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2600 6345 7.985184 AGATTAACTCATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
2601 6346 7.534085 TTAACTCATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
2602 6347 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
2603 6348 5.109903 ACTCATTTTGCTCCGTATGTAGTC 58.890 41.667 0.00 0.00 0.00 2.59
2604 6349 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2605 6350 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2606 6351 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
2607 6352 2.139323 TGCTCCGTATGTAGTCACCT 57.861 50.000 0.00 0.00 0.00 4.00
2608 6353 3.286329 TGCTCCGTATGTAGTCACCTA 57.714 47.619 0.00 0.00 0.00 3.08
2609 6354 3.828921 TGCTCCGTATGTAGTCACCTAT 58.171 45.455 0.00 0.00 0.00 2.57
2610 6355 4.212716 TGCTCCGTATGTAGTCACCTATT 58.787 43.478 0.00 0.00 0.00 1.73
2611 6356 4.037565 TGCTCCGTATGTAGTCACCTATTG 59.962 45.833 0.00 0.00 0.00 1.90
2612 6357 4.558898 GCTCCGTATGTAGTCACCTATTGG 60.559 50.000 0.00 0.00 39.83 3.16
2613 6358 4.795469 TCCGTATGTAGTCACCTATTGGA 58.205 43.478 0.00 0.00 37.04 3.53
2614 6359 5.202765 TCCGTATGTAGTCACCTATTGGAA 58.797 41.667 0.00 0.00 37.04 3.53
2615 6360 5.836898 TCCGTATGTAGTCACCTATTGGAAT 59.163 40.000 0.00 0.00 37.04 3.01
2616 6361 6.015688 TCCGTATGTAGTCACCTATTGGAATC 60.016 42.308 0.00 0.00 37.04 2.52
2617 6362 6.015350 CCGTATGTAGTCACCTATTGGAATCT 60.015 42.308 0.00 0.00 37.04 2.40
2618 6363 7.085116 CGTATGTAGTCACCTATTGGAATCTC 58.915 42.308 0.00 0.00 37.04 2.75
2619 6364 7.040340 CGTATGTAGTCACCTATTGGAATCTCT 60.040 40.741 0.00 0.00 37.04 3.10
2620 6365 9.298250 GTATGTAGTCACCTATTGGAATCTCTA 57.702 37.037 0.00 0.00 37.04 2.43
2621 6366 7.825331 TGTAGTCACCTATTGGAATCTCTAG 57.175 40.000 0.00 0.00 37.04 2.43
2622 6367 7.583625 TGTAGTCACCTATTGGAATCTCTAGA 58.416 38.462 0.00 0.00 37.04 2.43
2623 6368 8.059461 TGTAGTCACCTATTGGAATCTCTAGAA 58.941 37.037 0.00 0.00 37.04 2.10
2624 6369 7.979786 AGTCACCTATTGGAATCTCTAGAAA 57.020 36.000 0.00 0.00 37.04 2.52
2625 6370 8.017418 AGTCACCTATTGGAATCTCTAGAAAG 57.983 38.462 0.00 0.00 37.04 2.62
2626 6371 7.841729 AGTCACCTATTGGAATCTCTAGAAAGA 59.158 37.037 0.00 0.00 37.04 2.52
2627 6372 7.923878 GTCACCTATTGGAATCTCTAGAAAGAC 59.076 40.741 0.00 0.00 37.04 3.01
2628 6373 7.841729 TCACCTATTGGAATCTCTAGAAAGACT 59.158 37.037 0.00 0.00 37.04 3.24
2629 6374 8.482128 CACCTATTGGAATCTCTAGAAAGACTT 58.518 37.037 0.00 0.00 37.04 3.01
2630 6375 9.716556 ACCTATTGGAATCTCTAGAAAGACTTA 57.283 33.333 0.00 0.00 37.04 2.24
2643 6388 9.595823 TCTAGAAAGACTTATATTTTGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2644 6389 9.595823 CTAGAAAGACTTATATTTTGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2645 6390 8.494016 AGAAAGACTTATATTTTGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2646 6391 7.553044 AGAAAGACTTATATTTTGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2647 6392 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2648 6393 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2649 6394 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2718 6464 9.227490 CATTTTTAGTGATGTAAACGTTGACAA 57.773 29.630 22.10 4.27 0.00 3.18
3081 9683 8.705134 CAACATAGTCGTTTGTAAACTGTATCA 58.295 33.333 6.00 0.00 36.77 2.15
3099 9701 6.991938 TGTATCACAAAATTCTCTTTTGGGG 58.008 36.000 11.54 5.74 41.69 4.96
3100 9702 6.780031 TGTATCACAAAATTCTCTTTTGGGGA 59.220 34.615 11.54 9.85 41.69 4.81
3310 10208 2.978156 TCCAACTGAGGGCTTTGATT 57.022 45.000 0.00 0.00 0.00 2.57
3323 10221 3.518590 GCTTTGATTTATGCTGCTGCTT 58.481 40.909 17.00 12.79 40.48 3.91
3466 10388 6.992063 ATTAAGATAAGCATCATTAGCCCG 57.008 37.500 0.00 0.00 33.21 6.13
3480 10402 0.912486 AGCCCGCTTCACCTCTATTT 59.088 50.000 0.00 0.00 0.00 1.40
3547 10469 2.472695 TCAGACCAAAGTGATTCCCG 57.527 50.000 0.00 0.00 0.00 5.14
3598 10520 9.109393 CTTTTCACCGATTTCCTGAAGATATTA 57.891 33.333 0.00 0.00 0.00 0.98
3683 10605 1.452801 GTTCCTTCCCCGTTGGTCA 59.547 57.895 0.00 0.00 34.77 4.02
3684 10606 0.605589 GTTCCTTCCCCGTTGGTCAG 60.606 60.000 0.00 0.00 34.77 3.51
3685 10607 1.774894 TTCCTTCCCCGTTGGTCAGG 61.775 60.000 4.03 4.03 37.13 3.86
3686 10608 2.526046 CCTTCCCCGTTGGTCAGGT 61.526 63.158 0.00 0.00 33.34 4.00
3687 10609 1.003718 CTTCCCCGTTGGTCAGGTC 60.004 63.158 0.00 0.00 34.77 3.85
3688 10610 1.764571 CTTCCCCGTTGGTCAGGTCA 61.765 60.000 0.00 0.00 34.77 4.02
3689 10611 1.346479 TTCCCCGTTGGTCAGGTCAA 61.346 55.000 0.00 0.00 34.77 3.18
3690 10612 1.599797 CCCCGTTGGTCAGGTCAAC 60.600 63.158 0.00 0.00 40.57 3.18
3695 10617 2.806608 GTTGGTCAGGTCAACGTAGA 57.193 50.000 0.00 0.00 35.75 2.59
3696 10618 3.102052 GTTGGTCAGGTCAACGTAGAA 57.898 47.619 0.00 0.00 35.75 2.10
3697 10619 2.798847 GTTGGTCAGGTCAACGTAGAAC 59.201 50.000 0.00 0.00 35.75 3.01
3699 10621 1.267806 GGTCAGGTCAACGTAGAACGA 59.732 52.381 6.44 0.00 46.05 3.85
3700 10622 2.314122 GTCAGGTCAACGTAGAACGAC 58.686 52.381 6.44 0.00 46.05 4.34
3701 10623 1.069703 TCAGGTCAACGTAGAACGACG 60.070 52.381 6.44 5.99 46.05 5.12
3709 10631 2.156570 CGTAGAACGACGTCTCCTTC 57.843 55.000 14.70 11.06 46.05 3.46
3710 10632 1.202009 CGTAGAACGACGTCTCCTTCC 60.202 57.143 14.70 0.00 46.05 3.46
3711 10633 1.808945 GTAGAACGACGTCTCCTTCCA 59.191 52.381 14.70 0.00 0.00 3.53
3712 10634 0.597072 AGAACGACGTCTCCTTCCAC 59.403 55.000 14.70 0.00 0.00 4.02
3713 10635 0.728466 GAACGACGTCTCCTTCCACG 60.728 60.000 14.70 0.00 41.90 4.94
3714 10636 2.138656 AACGACGTCTCCTTCCACGG 62.139 60.000 14.70 0.00 40.43 4.94
3715 10637 2.572284 GACGTCTCCTTCCACGGG 59.428 66.667 8.70 0.00 40.43 5.28
3716 10638 1.975407 GACGTCTCCTTCCACGGGA 60.975 63.158 8.70 0.00 40.43 5.14
3717 10639 1.530013 GACGTCTCCTTCCACGGGAA 61.530 60.000 8.70 5.42 40.43 3.97
3718 10640 1.080025 CGTCTCCTTCCACGGGAAC 60.080 63.158 1.68 0.00 36.71 3.62
3730 10652 3.706140 GGGAACGCGTGCTAGATG 58.294 61.111 18.55 0.00 0.00 2.90
3731 10653 1.883084 GGGAACGCGTGCTAGATGG 60.883 63.158 18.55 0.00 0.00 3.51
3732 10654 2.526120 GGAACGCGTGCTAGATGGC 61.526 63.158 18.55 0.00 0.00 4.40
3733 10655 1.519455 GAACGCGTGCTAGATGGCT 60.519 57.895 14.98 0.00 0.00 4.75
3734 10656 1.756375 GAACGCGTGCTAGATGGCTG 61.756 60.000 14.98 0.00 0.00 4.85
3735 10657 2.963854 CGCGTGCTAGATGGCTGG 60.964 66.667 0.00 0.00 0.00 4.85
3740 10662 4.137879 GCTAGATGGCTGGCAGTG 57.862 61.111 17.16 1.01 46.72 3.66
3741 10663 1.222936 GCTAGATGGCTGGCAGTGT 59.777 57.895 17.16 2.05 46.72 3.55
3742 10664 0.813210 GCTAGATGGCTGGCAGTGTC 60.813 60.000 17.16 11.51 46.72 3.67
3743 10665 0.529337 CTAGATGGCTGGCAGTGTCG 60.529 60.000 17.16 0.00 0.00 4.35
3744 10666 2.578163 TAGATGGCTGGCAGTGTCGC 62.578 60.000 17.16 1.14 0.00 5.19
3745 10667 3.965539 GATGGCTGGCAGTGTCGCT 62.966 63.158 17.16 0.00 0.00 4.93
3753 10675 2.554775 CAGTGTCGCTGCTTGCTG 59.445 61.111 0.00 0.00 38.52 4.41
3754 10676 3.352222 AGTGTCGCTGCTTGCTGC 61.352 61.111 13.27 13.27 40.11 5.25
3764 10686 3.289834 CTTGCTGCGCCACCAACT 61.290 61.111 4.18 0.00 0.00 3.16
3765 10687 3.547249 CTTGCTGCGCCACCAACTG 62.547 63.158 4.18 0.00 0.00 3.16
3766 10688 4.873810 TGCTGCGCCACCAACTGT 62.874 61.111 4.18 0.00 0.00 3.55
3767 10689 3.595758 GCTGCGCCACCAACTGTT 61.596 61.111 4.18 0.00 0.00 3.16
3768 10690 2.332514 CTGCGCCACCAACTGTTG 59.667 61.111 13.50 13.50 0.00 3.33
3769 10691 2.439338 TGCGCCACCAACTGTTGT 60.439 55.556 18.38 5.00 0.00 3.32
3770 10692 2.003658 CTGCGCCACCAACTGTTGTT 62.004 55.000 18.38 1.92 36.75 2.83
3780 10702 3.344904 CAACTGTTGTTGCTTCTCCTG 57.655 47.619 12.30 0.00 45.57 3.86
3781 10703 1.312815 ACTGTTGTTGCTTCTCCTGC 58.687 50.000 0.00 0.00 0.00 4.85
3782 10704 0.595095 CTGTTGTTGCTTCTCCTGCC 59.405 55.000 0.00 0.00 0.00 4.85
3783 10705 1.165907 TGTTGTTGCTTCTCCTGCCG 61.166 55.000 0.00 0.00 0.00 5.69
3784 10706 2.260869 TTGTTGCTTCTCCTGCCGC 61.261 57.895 0.00 0.00 0.00 6.53
3785 10707 2.359230 GTTGCTTCTCCTGCCGCT 60.359 61.111 0.00 0.00 0.00 5.52
3786 10708 2.046892 TTGCTTCTCCTGCCGCTC 60.047 61.111 0.00 0.00 0.00 5.03
3787 10709 3.939837 TTGCTTCTCCTGCCGCTCG 62.940 63.158 0.00 0.00 0.00 5.03
3800 10722 3.567797 GCTCGGCCTTCATCGCAC 61.568 66.667 0.00 0.00 0.00 5.34
3801 10723 3.257561 CTCGGCCTTCATCGCACG 61.258 66.667 0.00 0.00 0.00 5.34
3804 10726 3.127533 GGCCTTCATCGCACGCTT 61.128 61.111 0.00 0.00 0.00 4.68
3805 10727 2.401195 GCCTTCATCGCACGCTTC 59.599 61.111 0.00 0.00 0.00 3.86
3806 10728 2.390599 GCCTTCATCGCACGCTTCA 61.391 57.895 0.00 0.00 0.00 3.02
3807 10729 1.421485 CCTTCATCGCACGCTTCAC 59.579 57.895 0.00 0.00 0.00 3.18
3808 10730 1.291184 CCTTCATCGCACGCTTCACA 61.291 55.000 0.00 0.00 0.00 3.58
3809 10731 0.094216 CTTCATCGCACGCTTCACAG 59.906 55.000 0.00 0.00 0.00 3.66
3810 10732 1.900585 TTCATCGCACGCTTCACAGC 61.901 55.000 0.00 0.00 43.41 4.40
3811 10733 3.121030 ATCGCACGCTTCACAGCC 61.121 61.111 0.00 0.00 44.06 4.85
3812 10734 3.596066 ATCGCACGCTTCACAGCCT 62.596 57.895 0.00 0.00 44.06 4.58
3813 10735 4.081030 CGCACGCTTCACAGCCTG 62.081 66.667 0.00 0.00 44.06 4.85
3814 10736 4.395583 GCACGCTTCACAGCCTGC 62.396 66.667 0.00 3.03 46.45 4.85
3815 10737 3.730761 CACGCTTCACAGCCTGCC 61.731 66.667 0.00 0.00 44.06 4.85
3816 10738 4.254709 ACGCTTCACAGCCTGCCA 62.255 61.111 0.00 0.00 44.06 4.92
3817 10739 3.730761 CGCTTCACAGCCTGCCAC 61.731 66.667 0.00 0.00 44.06 5.01
3818 10740 2.282040 GCTTCACAGCCTGCCACT 60.282 61.111 0.00 0.00 40.61 4.00
3819 10741 2.331132 GCTTCACAGCCTGCCACTC 61.331 63.158 0.00 0.00 40.61 3.51
3820 10742 2.031012 TTCACAGCCTGCCACTCG 59.969 61.111 0.00 0.00 0.00 4.18
3821 10743 2.440385 CTTCACAGCCTGCCACTCGA 62.440 60.000 0.00 0.00 0.00 4.04
3822 10744 1.830587 TTCACAGCCTGCCACTCGAT 61.831 55.000 0.00 0.00 0.00 3.59
3823 10745 1.812922 CACAGCCTGCCACTCGATC 60.813 63.158 0.00 0.00 0.00 3.69
3824 10746 1.986757 ACAGCCTGCCACTCGATCT 60.987 57.895 0.00 0.00 0.00 2.75
3825 10747 1.220206 CAGCCTGCCACTCGATCTT 59.780 57.895 0.00 0.00 0.00 2.40
3826 10748 0.809241 CAGCCTGCCACTCGATCTTC 60.809 60.000 0.00 0.00 0.00 2.87
3827 10749 0.975040 AGCCTGCCACTCGATCTTCT 60.975 55.000 0.00 0.00 0.00 2.85
3828 10750 0.529555 GCCTGCCACTCGATCTTCTC 60.530 60.000 0.00 0.00 0.00 2.87
3839 10761 2.566036 CGATCTTCTCGTCTATCGTGC 58.434 52.381 0.00 0.00 42.56 5.34
3840 10762 2.663334 CGATCTTCTCGTCTATCGTGCC 60.663 54.545 0.00 0.00 42.56 5.01
3841 10763 1.022735 TCTTCTCGTCTATCGTGCCC 58.977 55.000 0.00 0.00 40.80 5.36
3842 10764 0.738975 CTTCTCGTCTATCGTGCCCA 59.261 55.000 0.00 0.00 40.80 5.36
3843 10765 1.338337 CTTCTCGTCTATCGTGCCCAT 59.662 52.381 0.00 0.00 40.80 4.00
3844 10766 0.952280 TCTCGTCTATCGTGCCCATC 59.048 55.000 0.00 0.00 40.80 3.51
3845 10767 0.039074 CTCGTCTATCGTGCCCATCC 60.039 60.000 0.00 0.00 40.80 3.51
3846 10768 0.753848 TCGTCTATCGTGCCCATCCA 60.754 55.000 0.00 0.00 40.80 3.41
3847 10769 0.597637 CGTCTATCGTGCCCATCCAC 60.598 60.000 0.00 0.00 34.52 4.02
3848 10770 0.464036 GTCTATCGTGCCCATCCACA 59.536 55.000 0.00 0.00 35.47 4.17
3849 10771 0.464036 TCTATCGTGCCCATCCACAC 59.536 55.000 0.00 0.00 35.47 3.82
3850 10772 0.177836 CTATCGTGCCCATCCACACA 59.822 55.000 0.00 0.00 36.57 3.72
3851 10773 0.177836 TATCGTGCCCATCCACACAG 59.822 55.000 0.00 0.00 36.57 3.66
3852 10774 2.541547 ATCGTGCCCATCCACACAGG 62.542 60.000 0.00 0.00 36.57 4.00
3853 10775 3.064324 GTGCCCATCCACACAGGC 61.064 66.667 0.00 0.00 45.96 4.85
3855 10777 4.722700 GCCCATCCACACAGGCGT 62.723 66.667 0.00 0.00 35.30 5.68
3867 10789 2.482864 CACAGGCGTGCATGATATACA 58.517 47.619 13.95 0.00 36.06 2.29
3868 10790 2.871633 CACAGGCGTGCATGATATACAA 59.128 45.455 13.95 0.00 36.06 2.41
3869 10791 2.872245 ACAGGCGTGCATGATATACAAC 59.128 45.455 13.95 0.00 0.00 3.32
3870 10792 2.096762 CAGGCGTGCATGATATACAACG 60.097 50.000 10.93 0.00 34.60 4.10
3871 10793 2.131972 GGCGTGCATGATATACAACGA 58.868 47.619 10.93 0.00 33.71 3.85
3872 10794 2.096909 GGCGTGCATGATATACAACGAC 60.097 50.000 10.93 0.00 33.71 4.34
3873 10795 2.538037 GCGTGCATGATATACAACGACA 59.462 45.455 10.93 0.00 33.71 4.35
3874 10796 3.000825 GCGTGCATGATATACAACGACAA 59.999 43.478 10.93 0.00 33.71 3.18
3875 10797 4.505300 CGTGCATGATATACAACGACAAC 58.495 43.478 0.00 0.00 33.71 3.32
3876 10798 4.032331 CGTGCATGATATACAACGACAACA 59.968 41.667 0.00 0.00 33.71 3.33
3877 10799 5.276820 CGTGCATGATATACAACGACAACAT 60.277 40.000 0.00 0.00 33.71 2.71
3878 10800 5.903530 GTGCATGATATACAACGACAACATG 59.096 40.000 0.00 0.00 37.50 3.21
3880 10802 6.291067 CATGATATACAACGACAACATGCT 57.709 37.500 0.00 0.00 0.00 3.79
3881 10803 5.966636 TGATATACAACGACAACATGCTC 57.033 39.130 0.00 0.00 0.00 4.26
3882 10804 4.502645 TGATATACAACGACAACATGCTCG 59.497 41.667 6.51 6.51 35.96 5.03
3883 10805 2.143008 TACAACGACAACATGCTCGT 57.857 45.000 7.63 7.63 44.89 4.18
3884 10806 0.859232 ACAACGACAACATGCTCGTC 59.141 50.000 12.51 6.85 42.21 4.20
3885 10807 0.163788 CAACGACAACATGCTCGTCC 59.836 55.000 12.51 0.00 42.21 4.79
3886 10808 0.249699 AACGACAACATGCTCGTCCA 60.250 50.000 12.51 0.00 42.21 4.02
3887 10809 0.944311 ACGACAACATGCTCGTCCAC 60.944 55.000 7.63 0.00 38.80 4.02
3888 10810 1.781555 GACAACATGCTCGTCCACG 59.218 57.895 0.00 0.00 41.45 4.94
3890 10812 0.944311 ACAACATGCTCGTCCACGAC 60.944 55.000 0.00 0.00 44.22 4.34
3891 10813 1.374252 AACATGCTCGTCCACGACC 60.374 57.895 0.00 0.00 44.22 4.79
3892 10814 2.094757 AACATGCTCGTCCACGACCA 62.095 55.000 0.00 0.00 44.22 4.02
3893 10815 1.153568 CATGCTCGTCCACGACCAT 60.154 57.895 4.42 4.42 43.14 3.55
3894 10816 1.153568 ATGCTCGTCCACGACCATG 60.154 57.895 8.73 0.00 41.47 3.66
3895 10817 1.604147 ATGCTCGTCCACGACCATGA 61.604 55.000 8.73 0.00 41.47 3.07
3896 10818 1.141881 GCTCGTCCACGACCATGAT 59.858 57.895 0.00 0.00 44.22 2.45
3897 10819 0.460284 GCTCGTCCACGACCATGATT 60.460 55.000 0.00 0.00 44.22 2.57
3898 10820 1.280982 CTCGTCCACGACCATGATTG 58.719 55.000 0.00 0.00 44.22 2.67
3899 10821 0.739462 TCGTCCACGACCATGATTGC 60.739 55.000 0.00 0.00 44.22 3.56
3900 10822 1.705337 CGTCCACGACCATGATTGCC 61.705 60.000 0.00 0.00 43.02 4.52
3901 10823 1.077787 TCCACGACCATGATTGCCC 60.078 57.895 0.00 0.00 0.00 5.36
3902 10824 1.378382 CCACGACCATGATTGCCCA 60.378 57.895 0.00 0.00 0.00 5.36
3903 10825 0.964860 CCACGACCATGATTGCCCAA 60.965 55.000 0.00 0.00 0.00 4.12
3904 10826 0.452987 CACGACCATGATTGCCCAAG 59.547 55.000 0.00 0.00 0.00 3.61
3905 10827 1.315257 ACGACCATGATTGCCCAAGC 61.315 55.000 0.00 0.00 40.48 4.01
3914 10836 4.349503 TGCCCAAGCAGCGGTCAT 62.350 61.111 0.00 0.00 46.52 3.06
3915 10837 3.818787 GCCCAAGCAGCGGTCATG 61.819 66.667 0.00 0.00 39.53 3.07
3916 10838 3.136123 CCCAAGCAGCGGTCATGG 61.136 66.667 0.00 3.48 0.00 3.66
3917 10839 3.818787 CCAAGCAGCGGTCATGGC 61.819 66.667 0.00 0.00 0.00 4.40
3918 10840 2.749044 CAAGCAGCGGTCATGGCT 60.749 61.111 0.00 0.00 42.61 4.75
3919 10841 2.437359 AAGCAGCGGTCATGGCTC 60.437 61.111 0.00 0.00 39.08 4.70
3920 10842 3.984193 AAGCAGCGGTCATGGCTCC 62.984 63.158 0.00 0.00 39.08 4.70
3921 10843 4.479993 GCAGCGGTCATGGCTCCT 62.480 66.667 0.00 0.00 39.08 3.69
3922 10844 2.202987 CAGCGGTCATGGCTCCTC 60.203 66.667 0.00 0.00 39.08 3.71
3923 10845 3.474570 AGCGGTCATGGCTCCTCC 61.475 66.667 0.00 0.00 35.37 4.30
3931 10853 3.005539 TGGCTCCTCCACAGGCTC 61.006 66.667 0.00 0.00 40.72 4.70
3932 10854 4.154347 GGCTCCTCCACAGGCTCG 62.154 72.222 0.00 0.00 40.12 5.03
3933 10855 4.154347 GCTCCTCCACAGGCTCGG 62.154 72.222 0.00 0.00 40.12 4.63
3934 10856 3.465403 CTCCTCCACAGGCTCGGG 61.465 72.222 0.00 0.00 40.12 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.157738 GCCTGCATTTTGAGAGTGAGT 58.842 47.619 0.00 0.00 0.00 3.41
1 2 2.434428 AGCCTGCATTTTGAGAGTGAG 58.566 47.619 0.00 0.00 0.00 3.51
2 3 2.574006 AGCCTGCATTTTGAGAGTGA 57.426 45.000 0.00 0.00 0.00 3.41
3 4 3.066342 CCATAGCCTGCATTTTGAGAGTG 59.934 47.826 0.00 0.00 0.00 3.51
4 5 3.285484 CCATAGCCTGCATTTTGAGAGT 58.715 45.455 0.00 0.00 0.00 3.24
5 6 3.285484 ACCATAGCCTGCATTTTGAGAG 58.715 45.455 0.00 0.00 0.00 3.20
6 7 3.282021 GACCATAGCCTGCATTTTGAGA 58.718 45.455 0.00 0.00 0.00 3.27
55 86 6.368791 GGTCAATTAGCGACATCTGCATATTA 59.631 38.462 0.00 0.00 34.97 0.98
57 88 4.692625 GGTCAATTAGCGACATCTGCATAT 59.307 41.667 0.00 0.00 34.97 1.78
64 95 1.594331 GGGGGTCAATTAGCGACATC 58.406 55.000 0.00 0.00 34.97 3.06
85 116 8.406297 GCATTATAAAGTTCTTTCTTAGTGGGG 58.594 37.037 0.87 0.00 0.00 4.96
86 117 8.956426 TGCATTATAAAGTTCTTTCTTAGTGGG 58.044 33.333 0.87 0.00 0.00 4.61
153 184 6.818142 TCGTCATGTCAACTCAATTGTCATAT 59.182 34.615 5.13 0.00 42.78 1.78
214 250 8.149973 ACACACAAACTCAAAGTCGTTATAAT 57.850 30.769 0.00 0.00 0.00 1.28
217 253 5.583061 TGACACACAAACTCAAAGTCGTTAT 59.417 36.000 0.00 0.00 0.00 1.89
219 255 3.749088 TGACACACAAACTCAAAGTCGTT 59.251 39.130 0.00 0.00 0.00 3.85
221 257 3.485216 GGTGACACACAAACTCAAAGTCG 60.485 47.826 8.08 0.00 35.86 4.18
273 309 3.573967 TCTCCATAGCGTATGAAGCATGA 59.426 43.478 0.00 0.00 38.45 3.07
275 311 3.306364 GGTCTCCATAGCGTATGAAGCAT 60.306 47.826 6.59 0.00 38.45 3.79
286 322 2.205074 CACATTCGTGGTCTCCATAGC 58.795 52.381 0.00 0.00 39.64 2.97
297 333 0.716108 GAAGACTCGCCACATTCGTG 59.284 55.000 0.00 0.00 43.21 4.35
306 342 3.120041 GAGCAATTCTAGAAGACTCGCC 58.880 50.000 11.53 0.81 0.00 5.54
319 355 7.043059 CCTCTTTCGTCTAACATAGAGCAATTC 60.043 40.741 0.00 0.00 35.04 2.17
321 357 6.096987 TCCTCTTTCGTCTAACATAGAGCAAT 59.903 38.462 0.00 0.00 35.04 3.56
330 366 1.201647 CCGCTCCTCTTTCGTCTAACA 59.798 52.381 0.00 0.00 0.00 2.41
348 385 8.408601 AGAAAAATTGTAGGATTCAATCATCCG 58.591 33.333 0.00 0.00 46.77 4.18
380 417 7.148171 GGCCCTAATTATGCATGTTTCTATCTC 60.148 40.741 10.16 0.00 0.00 2.75
402 439 2.196319 CCAGCAGAAGAAATGGCCC 58.804 57.895 0.00 0.00 0.00 5.80
405 442 2.444421 AGAAGCCAGCAGAAGAAATGG 58.556 47.619 0.00 0.00 35.84 3.16
406 443 5.238214 GGTATAGAAGCCAGCAGAAGAAATG 59.762 44.000 0.00 0.00 0.00 2.32
407 444 5.131809 AGGTATAGAAGCCAGCAGAAGAAAT 59.868 40.000 0.00 0.00 0.00 2.17
408 445 4.471386 AGGTATAGAAGCCAGCAGAAGAAA 59.529 41.667 0.00 0.00 0.00 2.52
409 446 4.033709 AGGTATAGAAGCCAGCAGAAGAA 58.966 43.478 0.00 0.00 0.00 2.52
410 447 3.647636 AGGTATAGAAGCCAGCAGAAGA 58.352 45.455 0.00 0.00 0.00 2.87
411 448 4.560513 GCTAGGTATAGAAGCCAGCAGAAG 60.561 50.000 0.00 0.00 32.82 2.85
412 449 3.322254 GCTAGGTATAGAAGCCAGCAGAA 59.678 47.826 0.00 0.00 32.82 3.02
413 450 2.894126 GCTAGGTATAGAAGCCAGCAGA 59.106 50.000 0.00 0.00 32.82 4.26
414 451 2.896685 AGCTAGGTATAGAAGCCAGCAG 59.103 50.000 0.00 0.00 36.92 4.24
415 452 2.964209 AGCTAGGTATAGAAGCCAGCA 58.036 47.619 0.00 0.00 36.92 4.41
416 453 5.669164 ATAAGCTAGGTATAGAAGCCAGC 57.331 43.478 0.00 0.00 36.92 4.85
417 454 7.475137 AGAATAAGCTAGGTATAGAAGCCAG 57.525 40.000 0.00 0.00 36.92 4.85
418 455 8.391699 TCTAGAATAAGCTAGGTATAGAAGCCA 58.608 37.037 0.00 0.00 38.68 4.75
419 456 8.810990 TCTAGAATAAGCTAGGTATAGAAGCC 57.189 38.462 0.00 0.00 38.68 4.35
471 508 9.426837 TGCTAGTCATGTTTTAATTAGTACGTT 57.573 29.630 0.00 0.00 0.00 3.99
472 509 8.991243 TGCTAGTCATGTTTTAATTAGTACGT 57.009 30.769 0.00 0.00 0.00 3.57
473 510 9.901724 CTTGCTAGTCATGTTTTAATTAGTACG 57.098 33.333 0.00 0.00 0.00 3.67
474 511 9.704098 GCTTGCTAGTCATGTTTTAATTAGTAC 57.296 33.333 0.00 0.00 0.00 2.73
475 512 9.667107 AGCTTGCTAGTCATGTTTTAATTAGTA 57.333 29.630 0.00 0.00 0.00 1.82
476 513 8.567285 AGCTTGCTAGTCATGTTTTAATTAGT 57.433 30.769 0.00 0.00 0.00 2.24
477 514 9.846248 AAAGCTTGCTAGTCATGTTTTAATTAG 57.154 29.630 0.00 0.00 33.65 1.73
483 520 8.940768 TTTTAAAAGCTTGCTAGTCATGTTTT 57.059 26.923 0.00 1.19 35.73 2.43
484 521 8.940768 TTTTTAAAAGCTTGCTAGTCATGTTT 57.059 26.923 0.00 0.00 0.00 2.83
502 539 9.454859 CAGCCCAACCCAAAATATATTTTTAAA 57.545 29.630 18.72 0.00 37.86 1.52
503 540 8.049721 CCAGCCCAACCCAAAATATATTTTTAA 58.950 33.333 18.72 0.00 37.86 1.52
504 541 7.569240 CCAGCCCAACCCAAAATATATTTTTA 58.431 34.615 18.72 0.00 37.86 1.52
505 542 6.422333 CCAGCCCAACCCAAAATATATTTTT 58.578 36.000 18.72 4.55 37.86 1.94
506 543 5.631245 GCCAGCCCAACCCAAAATATATTTT 60.631 40.000 16.15 16.15 40.37 1.82
507 544 4.141505 GCCAGCCCAACCCAAAATATATTT 60.142 41.667 4.81 4.81 0.00 1.40
508 545 3.390967 GCCAGCCCAACCCAAAATATATT 59.609 43.478 0.00 0.00 0.00 1.28
509 546 2.972021 GCCAGCCCAACCCAAAATATAT 59.028 45.455 0.00 0.00 0.00 0.86
510 547 2.292521 TGCCAGCCCAACCCAAAATATA 60.293 45.455 0.00 0.00 0.00 0.86
511 548 1.203237 GCCAGCCCAACCCAAAATAT 58.797 50.000 0.00 0.00 0.00 1.28
512 549 0.178921 TGCCAGCCCAACCCAAAATA 60.179 50.000 0.00 0.00 0.00 1.40
513 550 1.461075 TGCCAGCCCAACCCAAAAT 60.461 52.632 0.00 0.00 0.00 1.82
514 551 2.041508 TGCCAGCCCAACCCAAAA 60.042 55.556 0.00 0.00 0.00 2.44
515 552 2.523902 CTGCCAGCCCAACCCAAA 60.524 61.111 0.00 0.00 0.00 3.28
518 555 2.861271 ATAAGCTGCCAGCCCAACCC 62.861 60.000 14.25 0.00 43.77 4.11
519 556 0.972471 AATAAGCTGCCAGCCCAACC 60.972 55.000 14.25 0.00 43.77 3.77
520 557 0.457443 GAATAAGCTGCCAGCCCAAC 59.543 55.000 14.25 0.00 43.77 3.77
521 558 0.332632 AGAATAAGCTGCCAGCCCAA 59.667 50.000 14.25 0.00 43.77 4.12
522 559 1.141657 CTAGAATAAGCTGCCAGCCCA 59.858 52.381 14.25 1.00 43.77 5.36
523 560 1.417890 TCTAGAATAAGCTGCCAGCCC 59.582 52.381 14.25 0.00 43.77 5.19
524 561 2.918712 TCTAGAATAAGCTGCCAGCC 57.081 50.000 14.25 0.00 43.77 4.85
525 562 2.547634 GCTTCTAGAATAAGCTGCCAGC 59.452 50.000 9.13 9.13 44.75 4.85
526 563 3.137533 GGCTTCTAGAATAAGCTGCCAG 58.862 50.000 20.57 2.16 46.81 4.85
527 564 2.158755 GGGCTTCTAGAATAAGCTGCCA 60.159 50.000 24.50 0.00 46.81 4.92
528 565 2.158755 TGGGCTTCTAGAATAAGCTGCC 60.159 50.000 18.36 18.36 46.81 4.85
529 566 3.199880 TGGGCTTCTAGAATAAGCTGC 57.800 47.619 13.28 8.77 46.81 5.25
530 567 6.515272 TTTTTGGGCTTCTAGAATAAGCTG 57.485 37.500 13.28 0.00 46.81 4.24
551 588 4.129380 GGCCAGTTCTTTTGCTGATTTTT 58.871 39.130 0.00 0.00 34.87 1.94
552 589 3.494924 GGGCCAGTTCTTTTGCTGATTTT 60.495 43.478 4.39 0.00 34.87 1.82
553 590 2.037641 GGGCCAGTTCTTTTGCTGATTT 59.962 45.455 4.39 0.00 34.87 2.17
554 591 1.620323 GGGCCAGTTCTTTTGCTGATT 59.380 47.619 4.39 0.00 34.87 2.57
555 592 1.203100 AGGGCCAGTTCTTTTGCTGAT 60.203 47.619 6.18 0.00 34.87 2.90
556 593 0.185901 AGGGCCAGTTCTTTTGCTGA 59.814 50.000 6.18 0.00 34.87 4.26
557 594 1.815003 CTAGGGCCAGTTCTTTTGCTG 59.185 52.381 6.18 0.00 0.00 4.41
558 595 1.272147 CCTAGGGCCAGTTCTTTTGCT 60.272 52.381 6.18 0.00 0.00 3.91
559 596 1.177401 CCTAGGGCCAGTTCTTTTGC 58.823 55.000 6.18 0.00 0.00 3.68
560 597 2.586648 ACCTAGGGCCAGTTCTTTTG 57.413 50.000 14.81 0.00 0.00 2.44
561 598 3.656264 ACTTACCTAGGGCCAGTTCTTTT 59.344 43.478 14.81 0.00 0.00 2.27
562 599 3.009143 CACTTACCTAGGGCCAGTTCTTT 59.991 47.826 14.81 0.00 0.00 2.52
563 600 2.572104 CACTTACCTAGGGCCAGTTCTT 59.428 50.000 14.81 0.00 0.00 2.52
564 601 2.188817 CACTTACCTAGGGCCAGTTCT 58.811 52.381 14.81 0.00 0.00 3.01
565 602 2.693267 CACTTACCTAGGGCCAGTTC 57.307 55.000 14.81 0.00 0.00 3.01
572 609 0.249911 GCGGATGCACTTACCTAGGG 60.250 60.000 14.81 0.00 42.15 3.53
573 610 0.753262 AGCGGATGCACTTACCTAGG 59.247 55.000 7.41 7.41 46.23 3.02
574 611 1.539065 CCAGCGGATGCACTTACCTAG 60.539 57.143 0.00 0.00 46.23 3.02
575 612 0.464036 CCAGCGGATGCACTTACCTA 59.536 55.000 0.00 0.00 46.23 3.08
576 613 1.221840 CCAGCGGATGCACTTACCT 59.778 57.895 0.00 0.00 46.23 3.08
577 614 0.179045 ATCCAGCGGATGCACTTACC 60.179 55.000 8.94 0.00 41.43 2.85
610 2441 2.224606 AGTGCAGGAAATATGGCATCG 58.775 47.619 1.65 0.00 38.68 3.84
615 2446 4.264253 TGTCAGAAGTGCAGGAAATATGG 58.736 43.478 0.00 0.00 0.00 2.74
619 2450 4.037208 CAGTTTGTCAGAAGTGCAGGAAAT 59.963 41.667 0.00 0.00 0.00 2.17
628 2459 4.192317 GTCTTGACCAGTTTGTCAGAAGT 58.808 43.478 0.00 0.00 45.37 3.01
633 2464 2.684001 ACGTCTTGACCAGTTTGTCA 57.316 45.000 0.00 0.00 43.26 3.58
661 2492 2.093500 TCAGCGGATGCACTCACTAATT 60.093 45.455 0.00 0.00 46.23 1.40
662 2493 1.482182 TCAGCGGATGCACTCACTAAT 59.518 47.619 0.00 0.00 46.23 1.73
666 2497 0.390340 TCTTCAGCGGATGCACTCAC 60.390 55.000 0.00 0.00 46.23 3.51
668 2499 2.515926 TATCTTCAGCGGATGCACTC 57.484 50.000 0.00 0.00 46.23 3.51
669 2500 2.988010 TTATCTTCAGCGGATGCACT 57.012 45.000 0.00 0.00 46.23 4.40
670 2501 5.673337 TTATTTATCTTCAGCGGATGCAC 57.327 39.130 0.00 0.00 46.23 4.57
671 2502 6.882610 AATTATTTATCTTCAGCGGATGCA 57.117 33.333 0.00 0.00 46.23 3.96
673 2504 7.805071 GTCCAAATTATTTATCTTCAGCGGATG 59.195 37.037 0.00 0.00 0.00 3.51
675 2506 7.054124 AGTCCAAATTATTTATCTTCAGCGGA 58.946 34.615 0.00 0.00 0.00 5.54
676 2507 7.264373 AGTCCAAATTATTTATCTTCAGCGG 57.736 36.000 0.00 0.00 0.00 5.52
677 2508 9.013490 CAAAGTCCAAATTATTTATCTTCAGCG 57.987 33.333 0.00 0.00 0.00 5.18
697 2538 7.077605 TGATGAAACATCGTCATTTCAAAGTC 58.922 34.615 12.36 8.13 45.34 3.01
699 2540 7.080099 ACTGATGAAACATCGTCATTTCAAAG 58.920 34.615 12.36 13.74 45.34 2.77
742 2583 1.670087 CGTGTCCAACTTCTCTGCGAT 60.670 52.381 0.00 0.00 0.00 4.58
743 2584 0.318699 CGTGTCCAACTTCTCTGCGA 60.319 55.000 0.00 0.00 0.00 5.10
744 2585 1.284982 CCGTGTCCAACTTCTCTGCG 61.285 60.000 0.00 0.00 0.00 5.18
745 2586 0.033504 TCCGTGTCCAACTTCTCTGC 59.966 55.000 0.00 0.00 0.00 4.26
746 2587 1.341531 AGTCCGTGTCCAACTTCTCTG 59.658 52.381 0.00 0.00 0.00 3.35
747 2588 1.341531 CAGTCCGTGTCCAACTTCTCT 59.658 52.381 0.00 0.00 0.00 3.10
748 2589 1.784525 CAGTCCGTGTCCAACTTCTC 58.215 55.000 0.00 0.00 0.00 2.87
749 2590 0.249911 GCAGTCCGTGTCCAACTTCT 60.250 55.000 0.00 0.00 0.00 2.85
750 2591 1.557443 CGCAGTCCGTGTCCAACTTC 61.557 60.000 0.00 0.00 0.00 3.01
751 2592 1.594293 CGCAGTCCGTGTCCAACTT 60.594 57.895 0.00 0.00 0.00 2.66
752 2593 2.029073 CGCAGTCCGTGTCCAACT 59.971 61.111 0.00 0.00 0.00 3.16
753 2594 3.712881 GCGCAGTCCGTGTCCAAC 61.713 66.667 0.30 0.00 39.71 3.77
754 2595 3.741830 TTGCGCAGTCCGTGTCCAA 62.742 57.895 11.31 0.00 39.71 3.53
755 2596 3.741830 TTTGCGCAGTCCGTGTCCA 62.742 57.895 11.31 0.00 39.71 4.02
756 2597 2.539338 TTTTGCGCAGTCCGTGTCC 61.539 57.895 11.31 0.00 39.71 4.02
757 2598 1.368850 GTTTTGCGCAGTCCGTGTC 60.369 57.895 11.31 0.00 39.71 3.67
758 2599 2.713154 GTTTTGCGCAGTCCGTGT 59.287 55.556 11.31 0.00 39.71 4.49
813 2654 1.360911 GAGAAGGCCGAGGTCGATC 59.639 63.158 0.00 0.00 43.02 3.69
824 2665 2.560051 GAAGACGGGTCGGAGAAGGC 62.560 65.000 0.00 0.00 39.69 4.35
827 2668 0.886563 GAAGAAGACGGGTCGGAGAA 59.113 55.000 0.00 0.00 39.69 2.87
828 2669 0.037877 AGAAGAAGACGGGTCGGAGA 59.962 55.000 0.00 0.00 34.09 3.71
831 2672 0.889306 AGAAGAAGAAGACGGGTCGG 59.111 55.000 0.00 0.00 34.09 4.79
834 2675 3.305471 CGAAGAAGAAGAAGAAGACGGGT 60.305 47.826 0.00 0.00 0.00 5.28
835 2676 3.246619 CGAAGAAGAAGAAGAAGACGGG 58.753 50.000 0.00 0.00 0.00 5.28
837 2678 3.915569 GGACGAAGAAGAAGAAGAAGACG 59.084 47.826 0.00 0.00 0.00 4.18
838 2679 4.682401 GTGGACGAAGAAGAAGAAGAAGAC 59.318 45.833 0.00 0.00 0.00 3.01
841 2682 4.665833 TGTGGACGAAGAAGAAGAAGAA 57.334 40.909 0.00 0.00 0.00 2.52
844 2688 4.665833 TCTTGTGGACGAAGAAGAAGAA 57.334 40.909 0.00 0.00 0.00 2.52
859 4383 5.243426 TCCTTTTTCCGTCTTTTCTTGTG 57.757 39.130 0.00 0.00 0.00 3.33
884 4415 6.708285 TGGAGTGGTAAATAAGAGAAGGAAC 58.292 40.000 0.00 0.00 0.00 3.62
905 4436 2.497675 CTCCTCTGTTTTCTCGGATGGA 59.502 50.000 0.00 0.00 0.00 3.41
924 4459 0.744771 AGCGGCGGAGGATTTTTCTC 60.745 55.000 9.78 0.00 0.00 2.87
1090 4655 4.021925 GGGCACGAGGAGCTGGTT 62.022 66.667 0.00 0.00 0.00 3.67
1148 4716 1.753368 CTCGAATCAGAGGAGGGGGC 61.753 65.000 0.00 0.00 34.74 5.80
1149 4717 0.105964 TCTCGAATCAGAGGAGGGGG 60.106 60.000 0.00 0.00 38.71 5.40
1150 4718 2.008242 ATCTCGAATCAGAGGAGGGG 57.992 55.000 0.00 0.00 38.71 4.79
1151 4719 2.030363 CGAATCTCGAATCAGAGGAGGG 60.030 54.545 0.00 0.00 43.74 4.30
1175 4743 0.035056 AGCTAAAACAGGGCGCATCT 60.035 50.000 10.83 2.58 0.00 2.90
1288 4856 1.741706 TGTGCGTCAGCTACTACTACC 59.258 52.381 0.00 0.00 45.42 3.18
1313 4881 1.962807 CAGGTGTTGCAAGGGATTTCA 59.037 47.619 0.00 0.00 0.00 2.69
1368 4940 4.710528 AACTCGTTTAGTCAAGCTTTCG 57.289 40.909 0.00 0.00 37.50 3.46
1407 4981 7.995663 TCCCCTGCCAAATATATATTACAGTT 58.004 34.615 20.58 2.95 0.00 3.16
1408 4982 7.582909 TCCCCTGCCAAATATATATTACAGT 57.417 36.000 20.58 3.23 0.00 3.55
1409 4983 8.877864 TTTCCCCTGCCAAATATATATTACAG 57.122 34.615 17.87 17.87 0.00 2.74
1410 4984 7.396055 GCTTTCCCCTGCCAAATATATATTACA 59.604 37.037 8.39 6.91 0.00 2.41
1411 4985 7.615757 AGCTTTCCCCTGCCAAATATATATTAC 59.384 37.037 8.39 2.92 0.00 1.89
1412 4986 7.708624 AGCTTTCCCCTGCCAAATATATATTA 58.291 34.615 8.39 0.00 0.00 0.98
1417 4991 3.971468 AGCTTTCCCCTGCCAAATATA 57.029 42.857 0.00 0.00 0.00 0.86
1477 5057 7.582667 ACTGGCATAAAAGTAAACAGAAACT 57.417 32.000 0.00 0.00 0.00 2.66
1478 5058 9.908152 AATACTGGCATAAAAGTAAACAGAAAC 57.092 29.630 0.00 0.00 32.84 2.78
1534 5119 2.349155 CGGTTAAGAAACAGAACGCCAC 60.349 50.000 0.00 0.00 37.34 5.01
1566 5166 5.995897 GCCTACTTCTTGTTCTCAGGTTTAA 59.004 40.000 0.00 0.00 0.00 1.52
1585 5185 1.486726 AGAGTACATTGCCCAGCCTAC 59.513 52.381 0.00 0.00 0.00 3.18
1635 5235 3.401243 GATTCCAAGCGCGCCCTTG 62.401 63.158 30.33 24.57 41.40 3.61
1653 5253 6.010294 ACACCTCCGTATCTAAATACATCG 57.990 41.667 0.00 0.00 38.11 3.84
1657 5257 7.263496 AGTGAAACACCTCCGTATCTAAATAC 58.737 38.462 0.00 0.00 41.43 1.89
1677 5277 4.142403 CGGTAAGATACGGGTGTAAGTGAA 60.142 45.833 0.00 0.00 33.44 3.18
1784 5384 2.755103 CTGTTTAGGCCCTGTTTGGATC 59.245 50.000 0.00 0.00 38.35 3.36
1906 5535 2.613223 GGAAGTCAGAGGGTACAGTTGC 60.613 54.545 0.00 0.00 0.00 4.17
1933 5563 1.574263 GGTAAGGCAGAAGAGGAGGT 58.426 55.000 0.00 0.00 0.00 3.85
2234 5953 3.391049 ACTTCGGACTAGTGCAAACTTC 58.609 45.455 15.20 0.00 0.00 3.01
2300 6032 5.428253 TGCTATCTACTGGATGTTTGAACC 58.572 41.667 0.00 0.00 35.98 3.62
2380 6112 2.142292 GATGCACACCCCAACCCTCT 62.142 60.000 0.00 0.00 0.00 3.69
2393 6125 0.668401 GCTTTGGTTGGCAGATGCAC 60.668 55.000 7.19 0.00 44.36 4.57
2439 6171 9.989296 AGATTTCACTATATAGGCAGAGTCTAT 57.011 33.333 14.25 0.00 34.62 1.98
2440 6172 9.237187 CAGATTTCACTATATAGGCAGAGTCTA 57.763 37.037 14.25 0.00 0.00 2.59
2441 6173 7.728083 ACAGATTTCACTATATAGGCAGAGTCT 59.272 37.037 14.25 11.61 0.00 3.24
2442 6174 7.891561 ACAGATTTCACTATATAGGCAGAGTC 58.108 38.462 14.25 10.03 0.00 3.36
2443 6175 7.847711 ACAGATTTCACTATATAGGCAGAGT 57.152 36.000 14.25 2.85 0.00 3.24
2444 6176 9.800433 CATACAGATTTCACTATATAGGCAGAG 57.200 37.037 14.25 0.00 0.00 3.35
2445 6177 8.753133 CCATACAGATTTCACTATATAGGCAGA 58.247 37.037 14.25 6.26 0.00 4.26
2446 6178 7.493971 GCCATACAGATTTCACTATATAGGCAG 59.506 40.741 14.25 4.09 31.03 4.85
2496 6241 9.897349 GTCTAAAAAGACTTATATTTCGGAACG 57.103 33.333 0.00 0.00 44.07 3.95
2509 6254 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
2510 6255 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
2515 6260 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
2516 6261 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
2517 6262 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
2518 6263 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
2519 6264 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
2520 6265 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
2521 6266 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
2522 6267 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
2523 6268 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
2524 6269 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
2525 6270 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
2526 6271 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
2527 6272 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
2528 6273 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
2529 6274 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
2530 6275 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
2531 6276 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
2565 6310 9.944376 AGCAAAATGAGTTAATCTACACTCTAA 57.056 29.630 1.31 0.00 40.24 2.10
2566 6311 9.587772 GAGCAAAATGAGTTAATCTACACTCTA 57.412 33.333 1.31 0.00 40.24 2.43
2567 6312 7.550906 GGAGCAAAATGAGTTAATCTACACTCT 59.449 37.037 1.31 0.00 40.24 3.24
2568 6313 7.464710 CGGAGCAAAATGAGTTAATCTACACTC 60.465 40.741 0.00 0.00 40.03 3.51
2569 6314 6.313905 CGGAGCAAAATGAGTTAATCTACACT 59.686 38.462 0.00 0.00 0.00 3.55
2570 6315 6.092259 ACGGAGCAAAATGAGTTAATCTACAC 59.908 38.462 0.00 0.00 0.00 2.90
2571 6316 6.170506 ACGGAGCAAAATGAGTTAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
2572 6317 6.663944 ACGGAGCAAAATGAGTTAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2573 6318 7.985184 ACATACGGAGCAAAATGAGTTAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2574 6319 6.823689 ACATACGGAGCAAAATGAGTTAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2575 6320 7.016361 ACATACGGAGCAAAATGAGTTAATC 57.984 36.000 0.00 0.00 0.00 1.75
2576 6321 7.769044 ACTACATACGGAGCAAAATGAGTTAAT 59.231 33.333 0.00 0.00 0.00 1.40
2577 6322 7.101054 ACTACATACGGAGCAAAATGAGTTAA 58.899 34.615 0.00 0.00 0.00 2.01
2578 6323 6.636705 ACTACATACGGAGCAAAATGAGTTA 58.363 36.000 0.00 0.00 0.00 2.24
2579 6324 5.488341 ACTACATACGGAGCAAAATGAGTT 58.512 37.500 0.00 0.00 0.00 3.01
2580 6325 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2581 6326 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2582 6327 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2583 6328 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2584 6329 4.081087 AGGTGACTACATACGGAGCAAAAT 60.081 41.667 0.00 0.00 40.61 1.82
2585 6330 3.259876 AGGTGACTACATACGGAGCAAAA 59.740 43.478 0.00 0.00 40.61 2.44
2586 6331 2.829720 AGGTGACTACATACGGAGCAAA 59.170 45.455 0.00 0.00 40.61 3.68
2587 6332 2.453521 AGGTGACTACATACGGAGCAA 58.546 47.619 0.00 0.00 40.61 3.91
2588 6333 2.139323 AGGTGACTACATACGGAGCA 57.861 50.000 0.00 0.00 40.61 4.26
2601 6346 7.923878 GTCTTTCTAGAGATTCCAATAGGTGAC 59.076 40.741 0.00 0.00 35.89 3.67
2602 6347 7.841729 AGTCTTTCTAGAGATTCCAATAGGTGA 59.158 37.037 0.00 0.00 35.89 4.02
2603 6348 8.017418 AGTCTTTCTAGAGATTCCAATAGGTG 57.983 38.462 0.00 0.00 35.89 4.00
2604 6349 8.616799 AAGTCTTTCTAGAGATTCCAATAGGT 57.383 34.615 0.00 0.00 35.89 3.08
2617 6362 9.595823 CCGTTCCAAAATATAAGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
2618 6363 9.595823 TCCGTTCCAAAATATAAGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
2619 6364 9.595823 CTCCGTTCCAAAATATAAGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
2620 6365 7.553044 CCTCCGTTCCAAAATATAAGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
2621 6366 7.201705 CCCTCCGTTCCAAAATATAAGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2622 6367 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2623 6368 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2624 6369 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
2625 6370 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
2626 6371 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
2627 6372 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
2628 6373 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
2629 6374 5.901276 AGTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
2630 6375 4.720273 AGTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
2631 6376 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2632 6377 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2633 6378 2.301009 GAGTACTCCCTCCGTTCCAAAA 59.699 50.000 12.13 0.00 0.00 2.44
2634 6379 1.897802 GAGTACTCCCTCCGTTCCAAA 59.102 52.381 12.13 0.00 0.00 3.28
2635 6380 1.076677 AGAGTACTCCCTCCGTTCCAA 59.923 52.381 19.38 0.00 31.53 3.53
2636 6381 0.702902 AGAGTACTCCCTCCGTTCCA 59.297 55.000 19.38 0.00 31.53 3.53
2637 6382 1.064537 AGAGAGTACTCCCTCCGTTCC 60.065 57.143 19.38 0.00 43.53 3.62
2638 6383 2.423446 AGAGAGTACTCCCTCCGTTC 57.577 55.000 19.38 8.45 43.53 3.95
2639 6384 2.845586 ACTAGAGAGTACTCCCTCCGTT 59.154 50.000 19.38 0.00 43.53 4.44
2640 6385 2.435437 GACTAGAGAGTACTCCCTCCGT 59.565 54.545 19.38 13.13 43.53 4.69
2641 6386 2.701951 AGACTAGAGAGTACTCCCTCCG 59.298 54.545 19.38 10.14 43.53 4.63
2642 6387 4.711399 GAAGACTAGAGAGTACTCCCTCC 58.289 52.174 19.38 6.30 43.53 4.30
2643 6388 4.141869 ACGAAGACTAGAGAGTACTCCCTC 60.142 50.000 19.38 11.32 43.53 4.30
2644 6389 3.776417 ACGAAGACTAGAGAGTACTCCCT 59.224 47.826 19.38 15.62 43.53 4.20
2645 6390 4.141233 ACGAAGACTAGAGAGTACTCCC 57.859 50.000 19.38 7.90 43.53 4.30
2646 6391 5.876460 AGAAACGAAGACTAGAGAGTACTCC 59.124 44.000 19.38 10.83 43.53 3.85
2647 6392 6.973229 AGAAACGAAGACTAGAGAGTACTC 57.027 41.667 15.41 15.41 42.90 2.59
2648 6393 7.839907 TCTAGAAACGAAGACTAGAGAGTACT 58.160 38.462 0.00 0.00 38.02 2.73
2649 6394 8.652810 ATCTAGAAACGAAGACTAGAGAGTAC 57.347 38.462 0.00 0.00 43.37 2.73
2691 6436 7.377397 TGTCAACGTTTACATCACTAAAAATGC 59.623 33.333 11.15 0.00 0.00 3.56
2699 6445 5.353123 ACAACTTGTCAACGTTTACATCACT 59.647 36.000 15.53 0.00 0.00 3.41
2718 6464 8.041323 CAGGGATTACAGATTTACAGTACAACT 58.959 37.037 0.00 0.00 0.00 3.16
2998 9599 6.270231 AGGTTCAACTTGGAGTTACTACAGAT 59.730 38.462 0.00 0.00 36.03 2.90
3010 9611 4.136796 CAGTCAATGAGGTTCAACTTGGA 58.863 43.478 0.00 0.00 0.00 3.53
3073 9675 7.255942 CCCCAAAAGAGAATTTTGTGATACAGT 60.256 37.037 11.03 0.00 37.62 3.55
3081 9683 6.318112 AGATCTCCCCAAAAGAGAATTTTGT 58.682 36.000 11.03 0.00 43.35 2.83
3099 9701 7.930865 AGAATCTGCACCAGTAATAAAGATCTC 59.069 37.037 0.00 0.00 32.61 2.75
3100 9702 7.714377 CAGAATCTGCACCAGTAATAAAGATCT 59.286 37.037 0.00 0.00 32.61 2.75
3257 10070 5.556006 ACCCAAACAACAGTAGCTACTTA 57.444 39.130 23.94 0.00 33.46 2.24
3466 10388 4.095632 GCTGGAAGAAAATAGAGGTGAAGC 59.904 45.833 0.00 0.00 34.07 3.86
3480 10402 0.106268 TTTGGTGCTGGCTGGAAGAA 60.106 50.000 0.00 0.00 34.07 2.52
3598 10520 5.422012 GGAGAAGAGGAAGAACAGAGAGAAT 59.578 44.000 0.00 0.00 0.00 2.40
3683 10605 3.761481 CGTCGTTCTACGTTGACCT 57.239 52.632 0.00 0.00 43.14 3.85
3690 10612 1.202009 GGAAGGAGACGTCGTTCTACG 60.202 57.143 20.51 0.00 43.95 3.51
3691 10613 1.808945 TGGAAGGAGACGTCGTTCTAC 59.191 52.381 20.51 12.45 43.95 2.59
3692 10614 1.808945 GTGGAAGGAGACGTCGTTCTA 59.191 52.381 20.51 15.27 43.95 2.10
3693 10615 0.597072 GTGGAAGGAGACGTCGTTCT 59.403 55.000 20.51 12.99 43.95 3.01
3694 10616 0.728466 CGTGGAAGGAGACGTCGTTC 60.728 60.000 10.46 13.81 43.82 3.95
3695 10617 1.285023 CGTGGAAGGAGACGTCGTT 59.715 57.895 10.46 5.21 40.00 3.85
3696 10618 2.623915 CCGTGGAAGGAGACGTCGT 61.624 63.158 10.46 0.00 40.00 4.34
3697 10619 2.178521 CCGTGGAAGGAGACGTCG 59.821 66.667 10.46 0.00 40.00 5.12
3698 10620 1.530013 TTCCCGTGGAAGGAGACGTC 61.530 60.000 7.70 7.70 36.71 4.34
3699 10621 1.532316 TTCCCGTGGAAGGAGACGT 60.532 57.895 0.00 0.00 36.71 4.34
3700 10622 1.080025 GTTCCCGTGGAAGGAGACG 60.080 63.158 5.71 0.00 42.88 4.18
3701 10623 1.080025 CGTTCCCGTGGAAGGAGAC 60.080 63.158 15.91 1.99 46.65 3.36
3702 10624 2.939261 GCGTTCCCGTGGAAGGAGA 61.939 63.158 21.82 0.00 46.65 3.71
3703 10625 2.434359 GCGTTCCCGTGGAAGGAG 60.434 66.667 21.82 11.45 46.65 3.69
3704 10626 4.367023 CGCGTTCCCGTGGAAGGA 62.367 66.667 21.82 1.90 46.65 3.36
3711 10633 2.707849 ATCTAGCACGCGTTCCCGT 61.708 57.895 10.22 0.00 43.11 5.28
3712 10634 2.104331 ATCTAGCACGCGTTCCCG 59.896 61.111 10.22 0.00 37.07 5.14
3713 10635 1.883084 CCATCTAGCACGCGTTCCC 60.883 63.158 10.22 0.09 0.00 3.97
3714 10636 2.526120 GCCATCTAGCACGCGTTCC 61.526 63.158 10.22 3.23 0.00 3.62
3715 10637 1.519455 AGCCATCTAGCACGCGTTC 60.519 57.895 10.22 4.20 34.23 3.95
3716 10638 1.811266 CAGCCATCTAGCACGCGTT 60.811 57.895 10.22 0.00 34.23 4.84
3717 10639 2.202797 CAGCCATCTAGCACGCGT 60.203 61.111 5.58 5.58 34.23 6.01
3718 10640 2.963854 CCAGCCATCTAGCACGCG 60.964 66.667 3.53 3.53 34.23 6.01
3719 10641 3.275338 GCCAGCCATCTAGCACGC 61.275 66.667 0.00 0.00 34.23 5.34
3720 10642 1.886313 CTGCCAGCCATCTAGCACG 60.886 63.158 0.00 0.00 32.11 5.34
3721 10643 1.094073 CACTGCCAGCCATCTAGCAC 61.094 60.000 0.00 0.00 32.11 4.40
3722 10644 1.222661 CACTGCCAGCCATCTAGCA 59.777 57.895 0.00 0.00 34.63 3.49
3723 10645 0.813210 GACACTGCCAGCCATCTAGC 60.813 60.000 0.00 0.00 0.00 3.42
3724 10646 0.529337 CGACACTGCCAGCCATCTAG 60.529 60.000 0.00 0.00 0.00 2.43
3725 10647 1.517361 CGACACTGCCAGCCATCTA 59.483 57.895 0.00 0.00 0.00 1.98
3726 10648 2.267006 CGACACTGCCAGCCATCT 59.733 61.111 0.00 0.00 0.00 2.90
3727 10649 3.503363 GCGACACTGCCAGCCATC 61.503 66.667 0.00 0.00 0.00 3.51
3728 10650 4.025858 AGCGACACTGCCAGCCAT 62.026 61.111 0.00 0.00 34.65 4.40
3729 10651 4.994471 CAGCGACACTGCCAGCCA 62.994 66.667 0.00 0.00 40.19 4.75
3751 10673 2.003658 AACAACAGTTGGTGGCGCAG 62.004 55.000 17.76 0.00 36.97 5.18
3752 10674 2.049185 AACAACAGTTGGTGGCGCA 61.049 52.632 17.76 0.00 36.97 6.09
3753 10675 1.588667 CAACAACAGTTGGTGGCGC 60.589 57.895 21.99 0.00 44.55 6.53
3754 10676 4.707988 CAACAACAGTTGGTGGCG 57.292 55.556 21.99 0.00 44.55 5.69
3759 10681 2.033801 CAGGAGAAGCAACAACAGTTGG 59.966 50.000 17.76 1.83 42.21 3.77
3760 10682 2.542411 GCAGGAGAAGCAACAACAGTTG 60.542 50.000 12.03 12.03 44.22 3.16
3761 10683 1.678101 GCAGGAGAAGCAACAACAGTT 59.322 47.619 0.00 0.00 0.00 3.16
3762 10684 1.312815 GCAGGAGAAGCAACAACAGT 58.687 50.000 0.00 0.00 0.00 3.55
3763 10685 0.595095 GGCAGGAGAAGCAACAACAG 59.405 55.000 0.00 0.00 0.00 3.16
3764 10686 1.165907 CGGCAGGAGAAGCAACAACA 61.166 55.000 0.00 0.00 0.00 3.33
3765 10687 1.576421 CGGCAGGAGAAGCAACAAC 59.424 57.895 0.00 0.00 0.00 3.32
3766 10688 2.260869 GCGGCAGGAGAAGCAACAA 61.261 57.895 0.00 0.00 0.00 2.83
3767 10689 2.669569 GCGGCAGGAGAAGCAACA 60.670 61.111 0.00 0.00 0.00 3.33
3768 10690 2.359230 AGCGGCAGGAGAAGCAAC 60.359 61.111 1.45 0.00 0.00 4.17
3769 10691 2.046892 GAGCGGCAGGAGAAGCAA 60.047 61.111 1.45 0.00 0.00 3.91
3770 10692 4.441695 CGAGCGGCAGGAGAAGCA 62.442 66.667 1.45 0.00 0.00 3.91
3783 10705 3.567797 GTGCGATGAAGGCCGAGC 61.568 66.667 0.00 0.00 0.00 5.03
3784 10706 3.257561 CGTGCGATGAAGGCCGAG 61.258 66.667 0.00 0.00 0.00 4.63
3787 10709 3.100862 GAAGCGTGCGATGAAGGCC 62.101 63.158 0.00 0.00 0.00 5.19
3788 10710 2.390599 TGAAGCGTGCGATGAAGGC 61.391 57.895 0.00 0.00 0.00 4.35
3789 10711 1.291184 TGTGAAGCGTGCGATGAAGG 61.291 55.000 0.00 0.00 0.00 3.46
3790 10712 0.094216 CTGTGAAGCGTGCGATGAAG 59.906 55.000 0.00 0.00 0.00 3.02
3791 10713 1.900585 GCTGTGAAGCGTGCGATGAA 61.901 55.000 0.00 0.00 0.00 2.57
3792 10714 2.382746 GCTGTGAAGCGTGCGATGA 61.383 57.895 0.00 0.00 0.00 2.92
3793 10715 2.097160 GCTGTGAAGCGTGCGATG 59.903 61.111 0.00 0.00 0.00 3.84
3794 10716 3.121030 GGCTGTGAAGCGTGCGAT 61.121 61.111 0.00 0.00 35.24 4.58
3795 10717 4.299547 AGGCTGTGAAGCGTGCGA 62.300 61.111 0.00 0.00 35.24 5.10
3796 10718 4.081030 CAGGCTGTGAAGCGTGCG 62.081 66.667 6.28 0.00 42.42 5.34
3799 10721 4.254709 TGGCAGGCTGTGAAGCGT 62.255 61.111 17.16 0.00 35.24 5.07
3800 10722 3.730761 GTGGCAGGCTGTGAAGCG 61.731 66.667 17.16 0.00 35.24 4.68
3801 10723 2.282040 AGTGGCAGGCTGTGAAGC 60.282 61.111 17.16 0.02 0.00 3.86
3802 10724 2.031516 CGAGTGGCAGGCTGTGAAG 61.032 63.158 17.16 0.00 0.00 3.02
3803 10725 1.830587 ATCGAGTGGCAGGCTGTGAA 61.831 55.000 17.16 0.00 0.00 3.18
3804 10726 2.230994 GATCGAGTGGCAGGCTGTGA 62.231 60.000 17.16 5.39 0.00 3.58
3805 10727 1.812922 GATCGAGTGGCAGGCTGTG 60.813 63.158 17.16 0.00 0.00 3.66
3806 10728 1.548357 AAGATCGAGTGGCAGGCTGT 61.548 55.000 17.16 0.00 0.00 4.40
3807 10729 0.809241 GAAGATCGAGTGGCAGGCTG 60.809 60.000 10.94 10.94 0.00 4.85
3808 10730 0.975040 AGAAGATCGAGTGGCAGGCT 60.975 55.000 0.00 0.00 0.00 4.58
3809 10731 0.529555 GAGAAGATCGAGTGGCAGGC 60.530 60.000 0.00 0.00 0.00 4.85
3810 10732 3.657956 GAGAAGATCGAGTGGCAGG 57.342 57.895 0.00 0.00 0.00 4.85
3820 10742 2.350964 GGGCACGATAGACGAGAAGATC 60.351 54.545 0.00 0.00 45.77 2.75
3821 10743 1.609555 GGGCACGATAGACGAGAAGAT 59.390 52.381 0.00 0.00 45.77 2.40
3822 10744 1.022735 GGGCACGATAGACGAGAAGA 58.977 55.000 0.00 0.00 45.77 2.87
3823 10745 0.738975 TGGGCACGATAGACGAGAAG 59.261 55.000 0.00 0.00 45.77 2.85
3824 10746 1.337071 GATGGGCACGATAGACGAGAA 59.663 52.381 0.00 0.00 45.77 2.87
3825 10747 0.952280 GATGGGCACGATAGACGAGA 59.048 55.000 0.00 0.00 45.77 4.04
3826 10748 0.039074 GGATGGGCACGATAGACGAG 60.039 60.000 0.00 0.00 45.77 4.18
3827 10749 0.753848 TGGATGGGCACGATAGACGA 60.754 55.000 0.00 0.00 45.77 4.20
3829 10751 0.464036 TGTGGATGGGCACGATAGAC 59.536 55.000 0.00 0.00 41.38 2.59
3830 10752 0.464036 GTGTGGATGGGCACGATAGA 59.536 55.000 0.00 0.00 41.38 1.98
3831 10753 0.177836 TGTGTGGATGGGCACGATAG 59.822 55.000 0.00 0.00 38.36 2.08
3832 10754 0.177836 CTGTGTGGATGGGCACGATA 59.822 55.000 0.00 0.00 38.36 2.92
3833 10755 1.078214 CTGTGTGGATGGGCACGAT 60.078 57.895 0.00 0.00 38.36 3.73
3834 10756 2.347114 CTGTGTGGATGGGCACGA 59.653 61.111 0.00 0.00 38.36 4.35
3835 10757 2.747460 CCTGTGTGGATGGGCACG 60.747 66.667 0.00 0.00 38.36 5.34
3836 10758 3.064324 GCCTGTGTGGATGGGCAC 61.064 66.667 0.00 0.00 43.59 5.01
3837 10759 4.720902 CGCCTGTGTGGATGGGCA 62.721 66.667 0.00 0.00 44.27 5.36
3838 10760 4.722700 ACGCCTGTGTGGATGGGC 62.723 66.667 0.00 0.00 41.02 5.36
3839 10761 2.747460 CACGCCTGTGTGGATGGG 60.747 66.667 2.92 0.00 41.34 4.00
3848 10770 2.872245 GTTGTATATCATGCACGCCTGT 59.128 45.455 0.00 0.00 0.00 4.00
3849 10771 2.096762 CGTTGTATATCATGCACGCCTG 60.097 50.000 0.00 0.00 0.00 4.85
3850 10772 2.135139 CGTTGTATATCATGCACGCCT 58.865 47.619 0.00 0.00 0.00 5.52
3851 10773 2.096909 GTCGTTGTATATCATGCACGCC 60.097 50.000 0.00 0.00 0.00 5.68
3852 10774 2.538037 TGTCGTTGTATATCATGCACGC 59.462 45.455 0.00 0.00 0.00 5.34
3853 10775 4.032331 TGTTGTCGTTGTATATCATGCACG 59.968 41.667 0.00 0.00 0.00 5.34
3854 10776 5.463499 TGTTGTCGTTGTATATCATGCAC 57.537 39.130 0.00 0.00 0.00 4.57
3855 10777 6.046885 CATGTTGTCGTTGTATATCATGCA 57.953 37.500 0.00 0.00 0.00 3.96
3856 10778 4.905866 GCATGTTGTCGTTGTATATCATGC 59.094 41.667 10.20 10.20 45.71 4.06
3857 10779 6.291067 AGCATGTTGTCGTTGTATATCATG 57.709 37.500 0.00 0.00 35.85 3.07
3858 10780 5.175673 CGAGCATGTTGTCGTTGTATATCAT 59.824 40.000 0.00 0.00 0.00 2.45
3859 10781 4.502645 CGAGCATGTTGTCGTTGTATATCA 59.497 41.667 0.00 0.00 0.00 2.15
3860 10782 4.994734 CGAGCATGTTGTCGTTGTATATC 58.005 43.478 0.00 0.00 0.00 1.63
3869 10791 1.781555 GTGGACGAGCATGTTGTCG 59.218 57.895 11.25 11.25 40.23 4.35
3870 10792 0.666274 TCGTGGACGAGCATGTTGTC 60.666 55.000 0.00 0.00 44.22 3.18
3871 10793 1.365999 TCGTGGACGAGCATGTTGT 59.634 52.632 0.00 0.00 44.22 3.32
3872 10794 4.260194 TCGTGGACGAGCATGTTG 57.740 55.556 0.00 0.00 44.22 3.33
3881 10803 1.705337 GGCAATCATGGTCGTGGACG 61.705 60.000 0.00 0.00 41.45 4.79
3882 10804 1.376609 GGGCAATCATGGTCGTGGAC 61.377 60.000 0.00 0.00 0.00 4.02
3883 10805 1.077787 GGGCAATCATGGTCGTGGA 60.078 57.895 0.00 0.00 0.00 4.02
3884 10806 0.964860 TTGGGCAATCATGGTCGTGG 60.965 55.000 0.00 0.00 0.00 4.94
3885 10807 0.452987 CTTGGGCAATCATGGTCGTG 59.547 55.000 0.00 0.00 0.00 4.35
3886 10808 1.315257 GCTTGGGCAATCATGGTCGT 61.315 55.000 0.00 0.00 38.54 4.34
3887 10809 1.314534 TGCTTGGGCAATCATGGTCG 61.315 55.000 0.00 0.00 46.36 4.79
3888 10810 2.582272 TGCTTGGGCAATCATGGTC 58.418 52.632 0.00 0.00 46.36 4.02
3889 10811 4.870069 TGCTTGGGCAATCATGGT 57.130 50.000 0.00 0.00 46.36 3.55
3898 10820 3.818787 CATGACCGCTGCTTGGGC 61.819 66.667 0.00 0.00 39.26 5.36
3899 10821 3.136123 CCATGACCGCTGCTTGGG 61.136 66.667 0.00 0.00 0.00 4.12
3900 10822 3.818787 GCCATGACCGCTGCTTGG 61.819 66.667 0.00 0.00 34.62 3.61
3901 10823 2.749044 AGCCATGACCGCTGCTTG 60.749 61.111 0.00 0.00 34.56 4.01
3902 10824 2.437359 GAGCCATGACCGCTGCTT 60.437 61.111 0.00 0.00 36.48 3.91
3903 10825 4.479993 GGAGCCATGACCGCTGCT 62.480 66.667 6.69 0.00 41.10 4.24
3904 10826 4.479993 AGGAGCCATGACCGCTGC 62.480 66.667 5.94 5.94 44.31 5.25
3905 10827 2.202987 GAGGAGCCATGACCGCTG 60.203 66.667 0.00 0.00 36.48 5.18
3906 10828 3.474570 GGAGGAGCCATGACCGCT 61.475 66.667 0.00 0.00 39.95 5.52
3907 10829 3.785859 TGGAGGAGCCATGACCGC 61.786 66.667 0.00 0.00 43.33 5.68
3914 10836 3.005539 GAGCCTGTGGAGGAGCCA 61.006 66.667 0.00 0.00 46.96 4.75
3915 10837 4.154347 CGAGCCTGTGGAGGAGCC 62.154 72.222 0.00 0.00 42.93 4.70
3916 10838 4.154347 CCGAGCCTGTGGAGGAGC 62.154 72.222 0.00 0.00 42.93 4.70
3917 10839 3.465403 CCCGAGCCTGTGGAGGAG 61.465 72.222 0.00 0.00 42.93 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.