Multiple sequence alignment - TraesCS3A01G067100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G067100 chr3A 100.000 2732 0 0 1 2732 40283461 40286192 0.000000e+00 5046
1 TraesCS3A01G067100 chr3A 80.332 1566 192 60 54 1563 40188605 40190110 0.000000e+00 1079
2 TraesCS3A01G067100 chr3A 79.104 268 40 15 1563 1822 40190182 40190441 1.300000e-38 171
3 TraesCS3A01G067100 chr3D 89.916 1676 132 13 221 1873 29622969 29624630 0.000000e+00 2124
4 TraesCS3A01G067100 chr3D 83.484 1550 176 45 61 1550 29619221 29620750 0.000000e+00 1371
5 TraesCS3A01G067100 chr3D 85.804 479 43 16 1996 2450 29624629 29625106 4.090000e-133 484
6 TraesCS3A01G067100 chr3B 89.555 1168 87 14 138 1283 50531887 50533041 0.000000e+00 1448
7 TraesCS3A01G067100 chr3B 80.988 1478 175 60 134 1550 50417780 50419212 0.000000e+00 1075
8 TraesCS3A01G067100 chr3B 92.699 589 43 0 1285 1873 50533302 50533890 0.000000e+00 850
9 TraesCS3A01G067100 chr3B 89.391 575 47 7 2158 2728 50534017 50534581 0.000000e+00 712
10 TraesCS3A01G067100 chr7A 93.284 134 8 1 1865 1997 140763944 140764077 2.150000e-46 196
11 TraesCS3A01G067100 chr7A 93.284 134 8 1 1865 1997 141052835 141052968 2.150000e-46 196
12 TraesCS3A01G067100 chr7A 93.284 134 8 1 1865 1997 141307622 141307755 2.150000e-46 196
13 TraesCS3A01G067100 chr7A 93.284 134 8 1 1865 1997 141647613 141647746 2.150000e-46 196
14 TraesCS3A01G067100 chr7A 93.284 134 8 1 1865 1997 141898794 141898927 2.150000e-46 196
15 TraesCS3A01G067100 chr5B 92.754 138 7 2 1869 2003 290816550 290816687 2.150000e-46 196
16 TraesCS3A01G067100 chr4B 93.233 133 7 2 1869 1999 576982438 576982570 7.720000e-46 195
17 TraesCS3A01G067100 chr2B 92.647 136 8 2 1864 1998 777524736 777524870 7.720000e-46 195
18 TraesCS3A01G067100 chr6D 90.345 145 12 2 1864 2007 35022319 35022462 3.590000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G067100 chr3A 40283461 40286192 2731 False 5046.000000 5046 100.000000 1 2732 1 chr3A.!!$F1 2731
1 TraesCS3A01G067100 chr3A 40188605 40190441 1836 False 625.000000 1079 79.718000 54 1822 2 chr3A.!!$F2 1768
2 TraesCS3A01G067100 chr3D 29619221 29625106 5885 False 1326.333333 2124 86.401333 61 2450 3 chr3D.!!$F1 2389
3 TraesCS3A01G067100 chr3B 50417780 50419212 1432 False 1075.000000 1075 80.988000 134 1550 1 chr3B.!!$F1 1416
4 TraesCS3A01G067100 chr3B 50531887 50534581 2694 False 1003.333333 1448 90.548333 138 2728 3 chr3B.!!$F2 2590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 211 0.035598 TTCATCGCGGAAGGTTTGGA 59.964 50.0 6.13 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 5987 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.897657 ATGGCTCCATTGGATGAGATT 57.102 42.857 5.70 0.00 31.82 2.40
22 23 3.675348 TGGCTCCATTGGATGAGATTT 57.325 42.857 5.70 0.00 0.00 2.17
23 24 3.293337 TGGCTCCATTGGATGAGATTTG 58.707 45.455 5.70 0.00 0.00 2.32
24 25 3.053470 TGGCTCCATTGGATGAGATTTGA 60.053 43.478 5.70 0.00 0.00 2.69
25 26 3.568853 GGCTCCATTGGATGAGATTTGAG 59.431 47.826 5.70 0.00 0.00 3.02
26 27 3.568853 GCTCCATTGGATGAGATTTGAGG 59.431 47.826 5.70 0.00 0.00 3.86
27 28 4.142790 CTCCATTGGATGAGATTTGAGGG 58.857 47.826 5.70 0.00 0.00 4.30
28 29 3.528905 TCCATTGGATGAGATTTGAGGGT 59.471 43.478 0.00 0.00 0.00 4.34
29 30 3.635373 CCATTGGATGAGATTTGAGGGTG 59.365 47.826 0.00 0.00 0.00 4.61
30 31 4.529897 CATTGGATGAGATTTGAGGGTGA 58.470 43.478 0.00 0.00 0.00 4.02
31 32 4.656100 TTGGATGAGATTTGAGGGTGAA 57.344 40.909 0.00 0.00 0.00 3.18
32 33 4.656100 TGGATGAGATTTGAGGGTGAAA 57.344 40.909 0.00 0.00 0.00 2.69
33 34 4.996793 TGGATGAGATTTGAGGGTGAAAA 58.003 39.130 0.00 0.00 0.00 2.29
34 35 5.012239 TGGATGAGATTTGAGGGTGAAAAG 58.988 41.667 0.00 0.00 0.00 2.27
35 36 5.222109 TGGATGAGATTTGAGGGTGAAAAGA 60.222 40.000 0.00 0.00 0.00 2.52
36 37 5.711976 GGATGAGATTTGAGGGTGAAAAGAA 59.288 40.000 0.00 0.00 0.00 2.52
37 38 6.379417 GGATGAGATTTGAGGGTGAAAAGAAT 59.621 38.462 0.00 0.00 0.00 2.40
38 39 7.557719 GGATGAGATTTGAGGGTGAAAAGAATA 59.442 37.037 0.00 0.00 0.00 1.75
39 40 7.687941 TGAGATTTGAGGGTGAAAAGAATAC 57.312 36.000 0.00 0.00 0.00 1.89
40 41 7.461749 TGAGATTTGAGGGTGAAAAGAATACT 58.538 34.615 0.00 0.00 0.00 2.12
41 42 7.944554 TGAGATTTGAGGGTGAAAAGAATACTT 59.055 33.333 0.00 0.00 38.05 2.24
42 43 8.341892 AGATTTGAGGGTGAAAAGAATACTTC 57.658 34.615 0.00 0.00 35.05 3.01
43 44 8.166726 AGATTTGAGGGTGAAAAGAATACTTCT 58.833 33.333 0.00 0.00 43.15 2.85
44 45 9.449719 GATTTGAGGGTGAAAAGAATACTTCTA 57.550 33.333 0.00 0.00 39.61 2.10
45 46 8.617290 TTTGAGGGTGAAAAGAATACTTCTAC 57.383 34.615 0.00 0.00 39.61 2.59
46 47 7.554959 TGAGGGTGAAAAGAATACTTCTACT 57.445 36.000 0.00 0.00 39.61 2.57
47 48 7.974504 TGAGGGTGAAAAGAATACTTCTACTT 58.025 34.615 0.00 0.00 39.61 2.24
48 49 8.437575 TGAGGGTGAAAAGAATACTTCTACTTT 58.562 33.333 0.00 0.00 39.61 2.66
49 50 9.286170 GAGGGTGAAAAGAATACTTCTACTTTT 57.714 33.333 0.00 0.00 42.57 2.27
50 51 9.642343 AGGGTGAAAAGAATACTTCTACTTTTT 57.358 29.630 0.00 0.00 40.85 1.94
101 102 1.065854 GTGATGGGAGTCAGGTGGAAG 60.066 57.143 0.00 0.00 0.00 3.46
108 109 2.158667 GGAGTCAGGTGGAAGGAAAACA 60.159 50.000 0.00 0.00 0.00 2.83
109 110 3.551846 GAGTCAGGTGGAAGGAAAACAA 58.448 45.455 0.00 0.00 0.00 2.83
114 115 4.410883 TCAGGTGGAAGGAAAACAACTAGA 59.589 41.667 0.00 0.00 29.59 2.43
117 118 6.096282 CAGGTGGAAGGAAAACAACTAGAAAA 59.904 38.462 0.00 0.00 29.59 2.29
118 119 6.666113 AGGTGGAAGGAAAACAACTAGAAAAA 59.334 34.615 0.00 0.00 28.72 1.94
162 169 2.548480 GCATCGGTTATAGGGCTTTCAC 59.452 50.000 0.00 0.00 0.00 3.18
201 208 2.107950 TCATTCATCGCGGAAGGTTT 57.892 45.000 6.13 0.00 31.01 3.27
202 209 1.737236 TCATTCATCGCGGAAGGTTTG 59.263 47.619 6.13 0.00 31.01 2.93
203 210 1.094785 ATTCATCGCGGAAGGTTTGG 58.905 50.000 6.13 0.00 0.00 3.28
204 211 0.035598 TTCATCGCGGAAGGTTTGGA 59.964 50.000 6.13 0.00 0.00 3.53
244 256 6.180567 GCAAGCTTGCGATGATTTATTTTTC 58.819 36.000 33.75 4.42 45.11 2.29
272 287 9.981114 TTTTTCCATTTTCTTCTAGTTTCCATC 57.019 29.630 0.00 0.00 0.00 3.51
273 288 6.985188 TCCATTTTCTTCTAGTTTCCATCG 57.015 37.500 0.00 0.00 0.00 3.84
465 505 9.914923 AACTATTTTTGAATTCGCAAACTTTTC 57.085 25.926 0.04 0.00 37.48 2.29
473 526 6.142161 TGAATTCGCAAACTTTTCTGAATTCG 59.858 34.615 20.28 0.00 42.90 3.34
475 529 5.660629 TCGCAAACTTTTCTGAATTCGTA 57.339 34.783 0.04 0.00 0.00 3.43
480 534 7.356476 CGCAAACTTTTCTGAATTCGTAAACTC 60.356 37.037 0.04 0.00 0.00 3.01
486 540 7.795482 TTTCTGAATTCGTAAACTCCTTTCA 57.205 32.000 0.04 0.00 0.00 2.69
529 583 6.538742 TGACTTCATAGGATTTTCCGATTCAC 59.461 38.462 0.00 0.00 42.75 3.18
531 585 6.540189 ACTTCATAGGATTTTCCGATTCACAG 59.460 38.462 0.00 0.00 42.75 3.66
591 646 6.974965 AGACATTTGTGAATTCAGGAACTTC 58.025 36.000 8.80 6.80 34.60 3.01
750 810 3.685139 TTTCTCCTTTGTCGAGCAGAT 57.315 42.857 0.00 0.00 0.00 2.90
825 886 1.384989 CGACCGAGAGCTACATGGGT 61.385 60.000 0.00 0.15 0.00 4.51
951 1032 1.266989 GAAACTTGGAAGGAACGGCTG 59.733 52.381 0.00 0.00 0.00 4.85
962 1043 4.666253 ACGGCTGGGCAACATGCT 62.666 61.111 0.00 0.00 44.28 3.79
1060 1147 1.013596 TCAACACACAACGAAGGCAG 58.986 50.000 0.00 0.00 0.00 4.85
1122 1215 1.439353 CTGCACACCATGGCGATACC 61.439 60.000 13.04 0.00 39.84 2.73
1125 1218 0.875908 CACACCATGGCGATACCGAG 60.876 60.000 13.04 0.00 43.94 4.63
1133 1226 0.745468 GGCGATACCGAGGAAGAACT 59.255 55.000 0.00 0.00 38.22 3.01
1134 1227 1.536284 GGCGATACCGAGGAAGAACTG 60.536 57.143 0.00 0.00 38.22 3.16
1142 1235 1.567357 GAGGAAGAACTGGAGCTCCT 58.433 55.000 32.28 13.87 36.82 3.69
1199 1292 1.613630 GCCACCCTTCTCCTCTCCA 60.614 63.158 0.00 0.00 0.00 3.86
1447 5372 0.512952 CCGTCTGCCTCGACAAAAAG 59.487 55.000 0.00 0.00 33.54 2.27
1490 5416 5.007724 GCTTAATTATAAGTGCCGCTGAAGT 59.992 40.000 0.00 0.00 40.59 3.01
1559 5565 7.282450 GGTAAACCTCCAAATATGTAGTCCTTG 59.718 40.741 0.00 0.00 0.00 3.61
1588 5594 4.146745 ACGTTGTCCCTATTTATGACCC 57.853 45.455 0.00 0.00 0.00 4.46
1690 5697 6.331061 AGTTCCGTATATCTTGAGACACAAC 58.669 40.000 0.00 0.00 34.56 3.32
1691 5698 5.907866 TCCGTATATCTTGAGACACAACA 57.092 39.130 0.00 0.00 34.56 3.33
1706 5713 5.010314 AGACACAACAATCATTGCATCAGTT 59.990 36.000 0.00 0.00 32.47 3.16
1846 5859 7.458409 AATTAGCACAATATCATAAGGGCAG 57.542 36.000 0.00 0.00 0.00 4.85
1852 5865 6.498304 CACAATATCATAAGGGCAGTCAAAC 58.502 40.000 0.00 0.00 0.00 2.93
1862 5875 4.980573 AGGGCAGTCAAACACTACATTTA 58.019 39.130 0.00 0.00 32.21 1.40
1881 5894 8.488308 ACATTTATACCTTAATACTCCTCCGT 57.512 34.615 0.00 0.00 0.00 4.69
1882 5895 8.931568 ACATTTATACCTTAATACTCCTCCGTT 58.068 33.333 0.00 0.00 0.00 4.44
1883 5896 9.774413 CATTTATACCTTAATACTCCTCCGTTT 57.226 33.333 0.00 0.00 0.00 3.60
1886 5899 9.866655 TTATACCTTAATACTCCTCCGTTTAGA 57.133 33.333 0.00 0.00 0.00 2.10
1887 5900 8.773033 ATACCTTAATACTCCTCCGTTTAGAA 57.227 34.615 0.00 0.00 0.00 2.10
1888 5901 7.486407 ACCTTAATACTCCTCCGTTTAGAAA 57.514 36.000 0.00 0.00 0.00 2.52
1889 5902 8.087303 ACCTTAATACTCCTCCGTTTAGAAAT 57.913 34.615 0.00 0.00 0.00 2.17
1890 5903 9.205513 ACCTTAATACTCCTCCGTTTAGAAATA 57.794 33.333 0.00 0.00 0.00 1.40
1891 5904 9.473640 CCTTAATACTCCTCCGTTTAGAAATAC 57.526 37.037 0.00 0.00 0.00 1.89
1894 5907 8.943909 AATACTCCTCCGTTTAGAAATACTTG 57.056 34.615 0.00 0.00 0.00 3.16
1895 5908 6.356186 ACTCCTCCGTTTAGAAATACTTGT 57.644 37.500 0.00 0.00 0.00 3.16
1896 5909 6.396450 ACTCCTCCGTTTAGAAATACTTGTC 58.604 40.000 0.00 0.00 0.00 3.18
1897 5910 6.014840 ACTCCTCCGTTTAGAAATACTTGTCA 60.015 38.462 0.00 0.00 0.00 3.58
1898 5911 6.942976 TCCTCCGTTTAGAAATACTTGTCAT 58.057 36.000 0.00 0.00 0.00 3.06
1899 5912 7.039882 TCCTCCGTTTAGAAATACTTGTCATC 58.960 38.462 0.00 0.00 0.00 2.92
1900 5913 6.816640 CCTCCGTTTAGAAATACTTGTCATCA 59.183 38.462 0.00 0.00 0.00 3.07
1901 5914 7.333423 CCTCCGTTTAGAAATACTTGTCATCAA 59.667 37.037 0.00 0.00 0.00 2.57
1919 5932 7.828508 TCATCAAGATGAATAAAAGGGGATG 57.171 36.000 10.16 0.00 44.14 3.51
1920 5933 7.356680 TCATCAAGATGAATAAAAGGGGATGT 58.643 34.615 10.16 0.00 44.14 3.06
1921 5934 8.501904 TCATCAAGATGAATAAAAGGGGATGTA 58.498 33.333 10.16 0.00 44.14 2.29
1922 5935 9.305555 CATCAAGATGAATAAAAGGGGATGTAT 57.694 33.333 4.01 0.00 41.20 2.29
1923 5936 8.924511 TCAAGATGAATAAAAGGGGATGTATC 57.075 34.615 0.00 0.00 0.00 2.24
1924 5937 8.727149 TCAAGATGAATAAAAGGGGATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
1927 5940 9.621239 AGATGAATAAAAGGGGATGTATCTAGA 57.379 33.333 0.00 0.00 0.00 2.43
1930 5943 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
1938 5951 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
1962 5975 8.778059 AGTTGTAGATACATCCCTTTTTATCCA 58.222 33.333 0.00 0.00 35.89 3.41
1963 5976 9.574516 GTTGTAGATACATCCCTTTTTATCCAT 57.425 33.333 0.00 0.00 35.89 3.41
1965 5978 9.793259 TGTAGATACATCCCTTTTTATCCATTC 57.207 33.333 0.00 0.00 0.00 2.67
1967 5980 8.930846 AGATACATCCCTTTTTATCCATTCTG 57.069 34.615 0.00 0.00 0.00 3.02
1968 5981 8.727149 AGATACATCCCTTTTTATCCATTCTGA 58.273 33.333 0.00 0.00 0.00 3.27
1969 5982 9.525826 GATACATCCCTTTTTATCCATTCTGAT 57.474 33.333 0.00 0.00 0.00 2.90
1970 5983 7.592885 ACATCCCTTTTTATCCATTCTGATG 57.407 36.000 0.00 0.00 33.80 3.07
1971 5984 7.356680 ACATCCCTTTTTATCCATTCTGATGA 58.643 34.615 0.00 0.00 35.16 2.92
1972 5985 7.286316 ACATCCCTTTTTATCCATTCTGATGAC 59.714 37.037 0.00 0.00 35.16 3.06
1973 5986 6.730447 TCCCTTTTTATCCATTCTGATGACA 58.270 36.000 0.00 0.00 35.16 3.58
1974 5987 7.181361 TCCCTTTTTATCCATTCTGATGACAA 58.819 34.615 0.00 0.00 35.16 3.18
1975 5988 7.340232 TCCCTTTTTATCCATTCTGATGACAAG 59.660 37.037 0.00 0.00 35.16 3.16
1976 5989 7.123247 CCCTTTTTATCCATTCTGATGACAAGT 59.877 37.037 0.00 0.00 35.16 3.16
1977 5990 9.177608 CCTTTTTATCCATTCTGATGACAAGTA 57.822 33.333 0.00 0.00 35.16 2.24
1982 5995 7.814264 ATCCATTCTGATGACAAGTATTTCC 57.186 36.000 0.00 0.00 35.16 3.13
1983 5996 5.817296 TCCATTCTGATGACAAGTATTTCCG 59.183 40.000 0.00 0.00 35.16 4.30
1984 5997 5.008019 CCATTCTGATGACAAGTATTTCCGG 59.992 44.000 0.00 0.00 35.16 5.14
1985 5998 5.414789 TTCTGATGACAAGTATTTCCGGA 57.585 39.130 0.00 0.00 0.00 5.14
1986 5999 4.755411 TCTGATGACAAGTATTTCCGGAC 58.245 43.478 1.83 0.00 0.00 4.79
1987 6000 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1988 6001 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1989 6002 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1990 6003 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1991 6004 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1992 6005 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1993 6006 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1994 6007 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1995 6008 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1996 6009 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1997 6010 0.251742 TTTCCGGACGGAGGGAGTAA 60.252 55.000 13.64 1.47 46.06 2.24
2068 6081 7.842887 AAGATATAGAGGGAGTACAAAGGAC 57.157 40.000 0.00 0.00 0.00 3.85
2071 6084 1.076677 AGAGGGAGTACAAAGGACGGA 59.923 52.381 0.00 0.00 0.00 4.69
2072 6085 1.477295 GAGGGAGTACAAAGGACGGAG 59.523 57.143 0.00 0.00 0.00 4.63
2086 6099 2.370349 GACGGAGGAGAGATCAAGTCA 58.630 52.381 0.00 0.00 0.00 3.41
2089 6102 3.131933 ACGGAGGAGAGATCAAGTCAATG 59.868 47.826 0.00 0.00 0.00 2.82
2091 6104 3.181456 GGAGGAGAGATCAAGTCAATGGG 60.181 52.174 0.00 0.00 0.00 4.00
2092 6105 2.776536 AGGAGAGATCAAGTCAATGGGG 59.223 50.000 0.00 0.00 0.00 4.96
2111 6124 2.982488 GGGGAGAGAGAGAGAGAGAGAT 59.018 54.545 0.00 0.00 0.00 2.75
2114 6127 5.087323 GGGAGAGAGAGAGAGAGAGATAGA 58.913 50.000 0.00 0.00 0.00 1.98
2115 6128 5.723887 GGGAGAGAGAGAGAGAGAGATAGAT 59.276 48.000 0.00 0.00 0.00 1.98
2119 6132 9.420118 GAGAGAGAGAGAGAGAGATAGATAGAT 57.580 40.741 0.00 0.00 0.00 1.98
2177 6215 9.840427 ACTGTCGATGGTTTCATTTTTATTTAG 57.160 29.630 0.00 0.00 32.98 1.85
2192 6230 8.785468 TTTTTATTTAGTGGTTGCTAACGTTC 57.215 30.769 2.82 0.00 31.43 3.95
2306 6344 1.294459 GTCGTAACCCTGTCCACCC 59.706 63.158 0.00 0.00 0.00 4.61
2307 6345 2.263540 CGTAACCCTGTCCACCCG 59.736 66.667 0.00 0.00 0.00 5.28
2350 6388 1.129251 CATGTGTGTCTTGCTAAGGCG 59.871 52.381 0.00 0.00 42.25 5.52
2371 6409 4.679106 GCGGAATGTTCTTCTGATGAGAGA 60.679 45.833 0.00 0.00 0.00 3.10
2466 6507 1.917782 AACGGTGTGTGTGTGTGTGC 61.918 55.000 0.00 0.00 0.00 4.57
2468 6509 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
2516 6557 3.500299 ACGCATGTGCACATTTTACACTA 59.500 39.130 29.48 0.00 42.21 2.74
2521 6562 7.250569 GCATGTGCACATTTTACACTATACTT 58.749 34.615 29.48 0.64 41.59 2.24
2545 6586 8.801882 TTGGTGTTTCTATAATAAGGTTCCAG 57.198 34.615 0.00 0.00 0.00 3.86
2562 6603 8.934023 AGGTTCCAGTTAAGATTTGAATACAA 57.066 30.769 0.00 0.00 0.00 2.41
2591 6632 4.457834 AGCGAGTAATAGTTGCTTCACT 57.542 40.909 4.04 0.00 34.68 3.41
2603 6644 5.351458 AGTTGCTTCACTGGTTTCAAAATC 58.649 37.500 0.00 0.00 0.00 2.17
2604 6645 5.127682 AGTTGCTTCACTGGTTTCAAAATCT 59.872 36.000 0.00 0.00 0.00 2.40
2605 6646 4.935702 TGCTTCACTGGTTTCAAAATCTG 58.064 39.130 0.00 0.00 0.00 2.90
2606 6647 4.402155 TGCTTCACTGGTTTCAAAATCTGT 59.598 37.500 0.00 0.00 32.33 3.41
2618 6659 9.780413 GGTTTCAAAATCTGTCATCTTAGAATC 57.220 33.333 0.00 0.00 0.00 2.52
2623 6664 8.824781 CAAAATCTGTCATCTTAGAATCGATGT 58.175 33.333 0.00 0.00 38.47 3.06
2625 6666 6.456795 TCTGTCATCTTAGAATCGATGTGT 57.543 37.500 0.00 0.00 38.47 3.72
2658 6699 8.131455 TGCGTATCAGTTGAGAAAGAATTATC 57.869 34.615 0.00 0.00 0.00 1.75
2668 6709 9.430838 GTTGAGAAAGAATTATCAATGTCGATG 57.569 33.333 2.45 0.00 45.48 3.84
2681 6722 8.611654 ATCAATGTCGATGTCATCAATTGATA 57.388 30.769 27.30 6.24 39.54 2.15
2687 6728 7.649306 TGTCGATGTCATCAATTGATACTACTG 59.351 37.037 20.32 9.19 36.54 2.74
2695 6738 6.346120 CATCAATTGATACTACTGCGTAGCAC 60.346 42.308 20.32 7.56 46.75 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.895656 CAAATCTCATCCAATGGAGCCAT 59.104 43.478 8.40 0.00 34.05 4.40
2 3 3.053470 TCAAATCTCATCCAATGGAGCCA 60.053 43.478 8.40 0.00 34.05 4.75
4 5 3.568853 CCTCAAATCTCATCCAATGGAGC 59.431 47.826 8.40 0.00 34.05 4.70
5 6 4.142790 CCCTCAAATCTCATCCAATGGAG 58.857 47.826 8.40 0.15 34.05 3.86
6 7 3.528905 ACCCTCAAATCTCATCCAATGGA 59.471 43.478 3.67 3.67 35.55 3.41
7 8 3.635373 CACCCTCAAATCTCATCCAATGG 59.365 47.826 0.00 0.00 0.00 3.16
8 9 4.529897 TCACCCTCAAATCTCATCCAATG 58.470 43.478 0.00 0.00 0.00 2.82
9 10 4.868172 TCACCCTCAAATCTCATCCAAT 57.132 40.909 0.00 0.00 0.00 3.16
10 11 4.656100 TTCACCCTCAAATCTCATCCAA 57.344 40.909 0.00 0.00 0.00 3.53
11 12 4.656100 TTTCACCCTCAAATCTCATCCA 57.344 40.909 0.00 0.00 0.00 3.41
12 13 5.256474 TCTTTTCACCCTCAAATCTCATCC 58.744 41.667 0.00 0.00 0.00 3.51
13 14 6.824305 TTCTTTTCACCCTCAAATCTCATC 57.176 37.500 0.00 0.00 0.00 2.92
14 15 8.112183 AGTATTCTTTTCACCCTCAAATCTCAT 58.888 33.333 0.00 0.00 0.00 2.90
15 16 7.461749 AGTATTCTTTTCACCCTCAAATCTCA 58.538 34.615 0.00 0.00 0.00 3.27
16 17 7.929941 AGTATTCTTTTCACCCTCAAATCTC 57.070 36.000 0.00 0.00 0.00 2.75
17 18 8.341892 GAAGTATTCTTTTCACCCTCAAATCT 57.658 34.615 0.00 0.00 43.23 2.40
59 60 3.127030 CGAACAAAACTCAAGGCCTATCC 59.873 47.826 5.16 0.00 0.00 2.59
72 73 2.875933 TGACTCCCATCACGAACAAAAC 59.124 45.455 0.00 0.00 0.00 2.43
117 118 5.279758 CCTTAATCGACAACCCCCAATTTTT 60.280 40.000 0.00 0.00 0.00 1.94
118 119 4.221924 CCTTAATCGACAACCCCCAATTTT 59.778 41.667 0.00 0.00 0.00 1.82
119 120 3.767131 CCTTAATCGACAACCCCCAATTT 59.233 43.478 0.00 0.00 0.00 1.82
120 121 3.361786 CCTTAATCGACAACCCCCAATT 58.638 45.455 0.00 0.00 0.00 2.32
121 122 2.948600 GCCTTAATCGACAACCCCCAAT 60.949 50.000 0.00 0.00 0.00 3.16
122 123 1.614850 GCCTTAATCGACAACCCCCAA 60.615 52.381 0.00 0.00 0.00 4.12
123 124 0.034863 GCCTTAATCGACAACCCCCA 60.035 55.000 0.00 0.00 0.00 4.96
135 142 3.587506 AGCCCTATAACCGATGCCTTAAT 59.412 43.478 0.00 0.00 0.00 1.40
162 169 4.091549 TGAAGTGTAGTACCTAAGTGGGG 58.908 47.826 0.00 0.00 41.11 4.96
167 174 6.418226 GCGATGAATGAAGTGTAGTACCTAAG 59.582 42.308 0.00 0.00 0.00 2.18
201 208 2.308570 TGCCTAAGAAGCTTTCCATCCA 59.691 45.455 0.00 0.00 0.00 3.41
202 209 3.004752 TGCCTAAGAAGCTTTCCATCC 57.995 47.619 0.00 0.00 0.00 3.51
203 210 3.181492 GCTTGCCTAAGAAGCTTTCCATC 60.181 47.826 0.00 0.00 42.21 3.51
204 211 2.757314 GCTTGCCTAAGAAGCTTTCCAT 59.243 45.455 0.00 0.00 42.21 3.41
339 363 7.268235 GCCTTTGCAATTTTTATAAAAGTTCGC 59.732 33.333 20.61 20.61 37.47 4.70
465 505 9.463443 AAATTTGAAAGGAGTTTACGAATTCAG 57.537 29.630 6.22 1.11 0.00 3.02
511 565 8.980481 AATAACTGTGAATCGGAAAATCCTAT 57.020 30.769 0.00 0.00 33.30 2.57
705 764 4.085004 CCGACTCTCGTCTTCTTTGTTTTC 60.085 45.833 0.00 0.00 38.40 2.29
725 785 2.750948 CTCGACAAAGGAGAAAACCGA 58.249 47.619 0.00 0.00 33.27 4.69
750 810 2.231478 CACTTCAGTTCGGCTCTTCCTA 59.769 50.000 0.00 0.00 0.00 2.94
860 932 4.785575 TCCAATCCGGAGAGCTCA 57.214 55.556 17.77 0.00 39.64 4.26
885 962 7.490402 GCATGATCCAAATCAGTTTTTCTTAGG 59.510 37.037 0.00 0.00 44.90 2.69
951 1032 1.000607 CATGAGCATAGCATGTTGCCC 60.001 52.381 12.00 3.67 46.52 5.36
962 1043 7.106239 TCTACTCGATCTGTATCATGAGCATA 58.894 38.462 0.09 0.00 31.93 3.14
1060 1147 5.107065 ACACTTACGTACGTACTACAGTTCC 60.107 44.000 26.83 0.00 0.00 3.62
1122 1215 0.174617 GGAGCTCCAGTTCTTCCTCG 59.825 60.000 28.43 0.00 35.64 4.63
1125 1218 1.625818 TCAAGGAGCTCCAGTTCTTCC 59.374 52.381 33.90 5.02 38.89 3.46
1142 1235 2.357034 GGCCACGACGAAGCTCAA 60.357 61.111 0.00 0.00 0.00 3.02
1172 1265 1.076485 GAAGGGTGGCAGCCATGAT 60.076 57.895 34.81 18.99 38.48 2.45
1248 1342 4.812476 CCGATCTCAACGCCGCCA 62.812 66.667 0.00 0.00 0.00 5.69
1296 1659 1.600164 GCATGCGCACAAACAGAAAGA 60.600 47.619 14.90 0.00 38.36 2.52
1297 1660 0.780002 GCATGCGCACAAACAGAAAG 59.220 50.000 14.90 0.00 38.36 2.62
1342 1707 2.606519 TAGCACTTCCCCGGCACT 60.607 61.111 0.00 0.00 0.00 4.40
1436 1801 2.614057 AGCAACAGGTCTTTTTGTCGAG 59.386 45.455 0.00 0.00 0.00 4.04
1447 5372 1.529244 AACAGGGCAGCAACAGGTC 60.529 57.895 0.00 0.00 0.00 3.85
1490 5416 2.565391 TCACTGTTTCTTAGCCCGATCA 59.435 45.455 0.00 0.00 0.00 2.92
1537 5469 6.388619 ACAAGGACTACATATTTGGAGGTT 57.611 37.500 0.15 0.00 38.22 3.50
1559 5565 8.505625 TCATAAATAGGGACAACGTTAACAAAC 58.494 33.333 0.00 0.00 0.00 2.93
1588 5594 6.205784 ACAATACACAAATCTTTGGTTGACG 58.794 36.000 7.51 0.00 42.34 4.35
1690 5697 5.097529 GGTGTACAACTGATGCAATGATTG 58.902 41.667 2.87 0.00 0.00 2.67
1691 5698 4.766373 TGGTGTACAACTGATGCAATGATT 59.234 37.500 13.07 0.00 0.00 2.57
1745 5752 1.718757 GCACCTTGCGCCATCCTAAG 61.719 60.000 4.18 0.00 31.71 2.18
1862 5875 8.773033 TTCTAAACGGAGGAGTATTAAGGTAT 57.227 34.615 0.00 0.00 0.00 2.73
1873 5886 6.395629 TGACAAGTATTTCTAAACGGAGGAG 58.604 40.000 0.00 0.00 0.00 3.69
1874 5887 6.349243 TGACAAGTATTTCTAAACGGAGGA 57.651 37.500 0.00 0.00 0.00 3.71
1875 5888 6.816640 TGATGACAAGTATTTCTAAACGGAGG 59.183 38.462 0.00 0.00 0.00 4.30
1876 5889 7.827819 TGATGACAAGTATTTCTAAACGGAG 57.172 36.000 0.00 0.00 0.00 4.63
1877 5890 8.251750 CTTGATGACAAGTATTTCTAAACGGA 57.748 34.615 0.00 0.00 45.73 4.69
1892 5905 7.181361 TCCCCTTTTATTCATCTTGATGACAA 58.819 34.615 12.28 7.53 34.65 3.18
1893 5906 6.730447 TCCCCTTTTATTCATCTTGATGACA 58.270 36.000 12.28 5.64 0.00 3.58
1894 5907 7.286316 ACATCCCCTTTTATTCATCTTGATGAC 59.714 37.037 12.28 0.00 32.39 3.06
1895 5908 7.356680 ACATCCCCTTTTATTCATCTTGATGA 58.643 34.615 9.02 9.02 32.39 2.92
1896 5909 7.592885 ACATCCCCTTTTATTCATCTTGATG 57.407 36.000 4.35 4.35 33.80 3.07
1897 5910 9.525826 GATACATCCCCTTTTATTCATCTTGAT 57.474 33.333 0.00 0.00 0.00 2.57
1898 5911 8.727149 AGATACATCCCCTTTTATTCATCTTGA 58.273 33.333 0.00 0.00 0.00 3.02
1899 5912 8.930846 AGATACATCCCCTTTTATTCATCTTG 57.069 34.615 0.00 0.00 0.00 3.02
1901 5914 9.621239 TCTAGATACATCCCCTTTTATTCATCT 57.379 33.333 0.00 0.00 0.00 2.90
1904 5917 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
1912 5925 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
1936 5949 8.778059 TGGATAAAAAGGGATGTATCTACAACT 58.222 33.333 0.00 0.00 39.99 3.16
1937 5950 8.974060 TGGATAAAAAGGGATGTATCTACAAC 57.026 34.615 0.00 0.00 39.99 3.32
1939 5952 9.793259 GAATGGATAAAAAGGGATGTATCTACA 57.207 33.333 0.00 0.00 40.98 2.74
1942 5955 8.727149 TCAGAATGGATAAAAAGGGATGTATCT 58.273 33.333 0.00 0.00 36.16 1.98
1943 5956 8.924511 TCAGAATGGATAAAAAGGGATGTATC 57.075 34.615 0.00 0.00 36.16 2.24
1944 5957 9.305555 CATCAGAATGGATAAAAAGGGATGTAT 57.694 33.333 0.00 0.00 36.16 2.29
1945 5958 8.501904 TCATCAGAATGGATAAAAAGGGATGTA 58.498 33.333 0.00 0.00 36.16 2.29
1946 5959 7.286316 GTCATCAGAATGGATAAAAAGGGATGT 59.714 37.037 0.00 0.00 36.16 3.06
1947 5960 7.286087 TGTCATCAGAATGGATAAAAAGGGATG 59.714 37.037 0.00 0.00 36.16 3.51
1948 5961 7.356680 TGTCATCAGAATGGATAAAAAGGGAT 58.643 34.615 0.00 0.00 36.16 3.85
1949 5962 6.730447 TGTCATCAGAATGGATAAAAAGGGA 58.270 36.000 0.00 0.00 36.16 4.20
1950 5963 7.123247 ACTTGTCATCAGAATGGATAAAAAGGG 59.877 37.037 0.00 0.00 36.16 3.95
1951 5964 8.059798 ACTTGTCATCAGAATGGATAAAAAGG 57.940 34.615 0.00 0.00 36.16 3.11
1956 5969 9.342308 GGAAATACTTGTCATCAGAATGGATAA 57.658 33.333 0.00 0.00 36.16 1.75
1957 5970 7.657354 CGGAAATACTTGTCATCAGAATGGATA 59.343 37.037 0.00 0.00 36.16 2.59
1958 5971 6.484643 CGGAAATACTTGTCATCAGAATGGAT 59.515 38.462 0.00 0.00 36.16 3.41
1959 5972 5.817296 CGGAAATACTTGTCATCAGAATGGA 59.183 40.000 0.00 0.00 36.16 3.41
1960 5973 5.008019 CCGGAAATACTTGTCATCAGAATGG 59.992 44.000 0.00 0.00 36.16 3.16
1961 5974 5.817296 TCCGGAAATACTTGTCATCAGAATG 59.183 40.000 0.00 0.00 37.54 2.67
1962 5975 5.817816 GTCCGGAAATACTTGTCATCAGAAT 59.182 40.000 5.23 0.00 0.00 2.40
1963 5976 5.175859 GTCCGGAAATACTTGTCATCAGAA 58.824 41.667 5.23 0.00 0.00 3.02
1964 5977 4.676986 CGTCCGGAAATACTTGTCATCAGA 60.677 45.833 5.23 0.00 0.00 3.27
1965 5978 3.551890 CGTCCGGAAATACTTGTCATCAG 59.448 47.826 5.23 0.00 0.00 2.90
1966 5979 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1967 5980 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1968 5981 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1969 5982 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1970 5983 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1971 5984 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1972 5985 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1973 5986 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1974 5987 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1975 5988 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1976 5989 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1977 5990 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1978 5991 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
1979 5992 0.251742 TTTACTCCCTCCGTCCGGAA 60.252 55.000 5.23 0.00 44.66 4.30
1980 5993 0.251742 TTTTACTCCCTCCGTCCGGA 60.252 55.000 0.00 0.00 42.90 5.14
1981 5994 0.828677 ATTTTACTCCCTCCGTCCGG 59.171 55.000 0.00 0.00 0.00 5.14
1982 5995 2.428171 TGTATTTTACTCCCTCCGTCCG 59.572 50.000 0.00 0.00 0.00 4.79
1983 5996 4.684484 ATGTATTTTACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
1984 5997 6.997239 AAAATGTATTTTACTCCCTCCGTC 57.003 37.500 0.94 0.00 38.14 4.79
1985 5998 6.717997 ACAAAAATGTATTTTACTCCCTCCGT 59.282 34.615 3.25 0.00 38.92 4.69
1986 5999 7.153217 ACAAAAATGTATTTTACTCCCTCCG 57.847 36.000 3.25 0.00 38.92 4.63
1987 6000 9.239551 ACTACAAAAATGTATTTTACTCCCTCC 57.760 33.333 3.25 0.00 38.92 4.30
2050 6063 2.309755 TCCGTCCTTTGTACTCCCTCTA 59.690 50.000 0.00 0.00 0.00 2.43
2068 6081 3.492309 CCATTGACTTGATCTCTCCTCCG 60.492 52.174 0.00 0.00 0.00 4.63
2071 6084 2.776536 CCCCATTGACTTGATCTCTCCT 59.223 50.000 0.00 0.00 0.00 3.69
2072 6085 2.158696 CCCCCATTGACTTGATCTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
2086 6099 2.177669 CTCTCTCTCTCTCTCCCCCATT 59.822 54.545 0.00 0.00 0.00 3.16
2089 6102 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
2091 6104 5.087323 TCTATCTCTCTCTCTCTCTCTCCC 58.913 50.000 0.00 0.00 0.00 4.30
2092 6105 6.865834 ATCTATCTCTCTCTCTCTCTCTCC 57.134 45.833 0.00 0.00 0.00 3.71
2111 6124 9.343539 CTCTCTCTCTCTCGATCTATCTATCTA 57.656 40.741 0.00 0.00 0.00 1.98
2114 6127 8.055790 TCTCTCTCTCTCTCTCGATCTATCTAT 58.944 40.741 0.00 0.00 0.00 1.98
2115 6128 7.402862 TCTCTCTCTCTCTCTCGATCTATCTA 58.597 42.308 0.00 0.00 0.00 1.98
2119 6132 5.631119 TCTCTCTCTCTCTCTCTCGATCTA 58.369 45.833 0.00 0.00 0.00 1.98
2123 6136 3.885901 CTCTCTCTCTCTCTCTCTCTCGA 59.114 52.174 0.00 0.00 0.00 4.04
2124 6137 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
2177 6215 1.529865 GACCAGAACGTTAGCAACCAC 59.470 52.381 0.00 0.00 0.00 4.16
2192 6230 0.976641 TCTAGTGCAGTTGGGACCAG 59.023 55.000 0.00 0.00 38.89 4.00
2248 6286 2.158623 AGCACATGTCAAACCTTGAGGA 60.159 45.455 3.59 0.00 41.01 3.71
2306 6344 3.501828 TGTCAACATTGAGTTTGATCCCG 59.498 43.478 0.00 0.00 38.74 5.14
2307 6345 4.321230 GGTGTCAACATTGAGTTTGATCCC 60.321 45.833 0.00 0.00 38.74 3.85
2343 6381 3.861840 TCAGAAGAACATTCCGCCTTAG 58.138 45.455 0.00 0.00 0.00 2.18
2350 6388 5.128499 TCCTCTCTCATCAGAAGAACATTCC 59.872 44.000 0.00 0.00 0.00 3.01
2371 6409 1.343069 GCTATCGAGGGGAATGTCCT 58.657 55.000 0.00 0.00 36.57 3.85
2402 6441 7.596248 CGGAAGTTCAAGATTGATGAATTTGTT 59.404 33.333 5.01 0.00 37.01 2.83
2405 6444 7.040478 TCACGGAAGTTCAAGATTGATGAATTT 60.040 33.333 5.01 0.00 46.40 1.82
2423 6462 3.257393 CTGGAAATCAGAGTCACGGAAG 58.743 50.000 0.00 0.00 46.18 3.46
2472 6513 1.008652 CATTGCCACCACACACACG 60.009 57.895 0.00 0.00 0.00 4.49
2480 6521 0.607762 ATGCGTGTACATTGCCACCA 60.608 50.000 17.26 2.85 0.00 4.17
2481 6522 0.179166 CATGCGTGTACATTGCCACC 60.179 55.000 17.26 0.00 0.00 4.61
2521 6562 7.924541 ACTGGAACCTTATTATAGAAACACCA 58.075 34.615 0.00 0.00 0.00 4.17
2562 6603 8.888579 AAGCAACTATTACTCGCTTATATGTT 57.111 30.769 0.00 0.00 40.95 2.71
2568 6609 5.805486 CAGTGAAGCAACTATTACTCGCTTA 59.195 40.000 0.00 0.00 42.69 3.09
2570 6611 4.177026 CAGTGAAGCAACTATTACTCGCT 58.823 43.478 0.00 0.00 33.45 4.93
2576 6617 7.575414 TTTGAAACCAGTGAAGCAACTATTA 57.425 32.000 0.00 0.00 0.00 0.98
2578 6619 6.463995 TTTTGAAACCAGTGAAGCAACTAT 57.536 33.333 0.00 0.00 0.00 2.12
2584 6625 4.936891 ACAGATTTTGAAACCAGTGAAGC 58.063 39.130 0.00 0.00 0.00 3.86
2591 6632 8.690203 TTCTAAGATGACAGATTTTGAAACCA 57.310 30.769 0.00 0.00 0.00 3.67
2603 6644 7.531280 AAACACATCGATTCTAAGATGACAG 57.469 36.000 11.74 4.71 45.08 3.51
2604 6645 9.034544 CATAAACACATCGATTCTAAGATGACA 57.965 33.333 11.74 0.00 45.08 3.58
2605 6646 9.035607 ACATAAACACATCGATTCTAAGATGAC 57.964 33.333 11.74 0.00 45.08 3.06
2606 6647 9.599866 AACATAAACACATCGATTCTAAGATGA 57.400 29.630 11.74 0.00 45.08 2.92
2618 6659 5.555552 TGATACGCAAACATAAACACATCG 58.444 37.500 0.00 0.00 0.00 3.84
2623 6664 6.425417 TCTCAACTGATACGCAAACATAAACA 59.575 34.615 0.00 0.00 0.00 2.83
2625 6666 7.428282 TTCTCAACTGATACGCAAACATAAA 57.572 32.000 0.00 0.00 0.00 1.40
2658 6699 7.858583 AGTATCAATTGATGACATCGACATTG 58.141 34.615 27.59 19.45 41.93 2.82
2661 6702 7.649306 CAGTAGTATCAATTGATGACATCGACA 59.351 37.037 27.59 4.57 41.93 4.35
2662 6703 7.358765 GCAGTAGTATCAATTGATGACATCGAC 60.359 40.741 27.59 16.77 41.93 4.20
2687 6728 6.790336 ATGAAAATATTTTTCGTGCTACGC 57.210 33.333 14.45 0.00 42.21 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.