Multiple sequence alignment - TraesCS3A01G066800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G066800 chr3A 100.000 4567 0 0 1 4567 40180011 40184577 0.000000e+00 8434.0
1 TraesCS3A01G066800 chr3A 100.000 636 0 0 4872 5507 40184882 40185517 0.000000e+00 1175.0
2 TraesCS3A01G066800 chr3A 97.689 476 9 2 1 476 584823044 584822571 0.000000e+00 817.0
3 TraesCS3A01G066800 chr3A 97.468 474 10 2 1 474 543389642 543389171 0.000000e+00 808.0
4 TraesCS3A01G066800 chr3A 97.463 473 11 1 1 473 695544325 695543854 0.000000e+00 806.0
5 TraesCS3A01G066800 chr3A 97.257 474 12 1 1 474 251612509 251612037 0.000000e+00 802.0
6 TraesCS3A01G066800 chr3D 91.285 2467 125 37 490 2913 29609564 29611983 0.000000e+00 3282.0
7 TraesCS3A01G066800 chr3D 94.592 943 39 10 3470 4409 29612451 29613384 0.000000e+00 1448.0
8 TraesCS3A01G066800 chr3D 95.633 458 19 1 3037 3494 29611985 29612441 0.000000e+00 734.0
9 TraesCS3A01G066800 chr3D 91.791 134 9 1 4395 4528 29613788 29613919 9.420000e-43 185.0
10 TraesCS3A01G066800 chr3D 90.977 133 11 1 5276 5407 29614609 29614741 1.580000e-40 178.0
11 TraesCS3A01G066800 chr3D 86.275 102 13 1 5407 5507 29615233 29615334 5.830000e-20 110.0
12 TraesCS3A01G066800 chr3B 89.393 2602 148 39 571 3127 50408105 50410623 0.000000e+00 3158.0
13 TraesCS3A01G066800 chr3B 93.978 1096 28 10 3445 4528 50410949 50412018 0.000000e+00 1624.0
14 TraesCS3A01G066800 chr3B 93.061 490 19 6 4921 5410 50412598 50413072 0.000000e+00 702.0
15 TraesCS3A01G066800 chr3B 95.195 333 16 0 3162 3494 50410619 50410951 1.360000e-145 527.0
16 TraesCS3A01G066800 chr3B 91.262 103 5 1 5409 5507 50413595 50413697 2.680000e-28 137.0
17 TraesCS3A01G066800 chr3B 89.583 96 9 1 5410 5505 53199863 53199769 2.690000e-23 121.0
18 TraesCS3A01G066800 chr5A 97.252 473 12 1 1 473 338049674 338050145 0.000000e+00 800.0
19 TraesCS3A01G066800 chr5A 96.822 472 14 1 2 473 581471051 581471521 0.000000e+00 787.0
20 TraesCS3A01G066800 chr1A 97.252 473 12 1 1 473 36946304 36945833 0.000000e+00 800.0
21 TraesCS3A01G066800 chr4A 97.034 472 13 1 3 474 50509613 50509143 0.000000e+00 793.0
22 TraesCS3A01G066800 chrUn 96.429 476 16 1 1 476 236394167 236393693 0.000000e+00 784.0
23 TraesCS3A01G066800 chr6A 83.178 107 14 4 5308 5410 398249641 398249747 1.630000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G066800 chr3A 40180011 40185517 5506 False 4804.5 8434 100.000000 1 5507 2 chr3A.!!$F1 5506
1 TraesCS3A01G066800 chr3D 29609564 29615334 5770 False 989.5 3282 91.758833 490 5507 6 chr3D.!!$F1 5017
2 TraesCS3A01G066800 chr3B 50408105 50413697 5592 False 1229.6 3158 92.577800 571 5507 5 chr3B.!!$F1 4936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 415 0.032952 CCTTATTAGTAGCGCCGGCA 59.967 55.0 28.98 3.37 43.41 5.69 F
438 439 0.036388 CGCTACTGAGAGGCCCAAAA 60.036 55.0 0.00 0.00 0.00 2.44 F
463 464 0.172127 GCTGCTGCTAGGCTTTTTCC 59.828 55.0 8.53 0.00 36.03 3.13 F
465 466 0.405585 TGCTGCTAGGCTTTTTCCCT 59.594 50.0 0.00 0.00 36.47 4.20 F
2058 2082 0.613292 TGGAGAGACTGCAGGAGGAC 60.613 60.0 19.93 6.31 0.00 3.85 F
2640 2665 0.037326 GGCATCGTGTTCCAGAGTGA 60.037 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 1590 0.321122 GGTGATGGGATCCGAGCATC 60.321 60.000 18.07 13.93 0.00 3.91 R
2201 2225 0.976073 AGGTCCCGTGTATGGTGGAG 60.976 60.000 0.00 0.00 0.00 3.86 R
2260 2284 4.428294 AGATGATACAATGGACCCACAG 57.572 45.455 0.00 0.00 0.00 3.66 R
2464 2489 6.184068 TGGCTAGCCATACTGAAACAATAAA 58.816 36.000 32.88 3.09 41.89 1.40 R
2989 3038 0.751643 CTCTTGGGGGCCATAAACCG 60.752 60.000 4.39 0.00 31.53 4.44 R
4533 5072 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.510746 CGATGTATTTGCAAGTAATCGAGA 57.489 37.500 24.80 3.33 38.08 4.04
24 25 6.347881 CGATGTATTTGCAAGTAATCGAGAC 58.652 40.000 24.80 10.21 38.08 3.36
25 26 6.199154 CGATGTATTTGCAAGTAATCGAGACT 59.801 38.462 24.80 0.00 38.08 3.24
26 27 7.254117 CGATGTATTTGCAAGTAATCGAGACTT 60.254 37.037 24.80 9.18 38.08 3.01
33 34 5.547716 CAAGTAATCGAGACTTGTATCGC 57.452 43.478 24.68 0.05 45.73 4.58
34 35 5.274718 CAAGTAATCGAGACTTGTATCGCT 58.725 41.667 24.68 0.91 45.73 4.93
35 36 6.427974 CAAGTAATCGAGACTTGTATCGCTA 58.572 40.000 24.68 4.64 45.73 4.26
36 37 6.804770 AGTAATCGAGACTTGTATCGCTAT 57.195 37.500 12.19 0.45 38.79 2.97
37 38 7.204496 AGTAATCGAGACTTGTATCGCTATT 57.796 36.000 12.19 10.24 38.79 1.73
38 39 7.649973 AGTAATCGAGACTTGTATCGCTATTT 58.350 34.615 12.19 6.63 38.79 1.40
39 40 8.136165 AGTAATCGAGACTTGTATCGCTATTTT 58.864 33.333 12.19 4.70 38.79 1.82
40 41 6.994868 ATCGAGACTTGTATCGCTATTTTC 57.005 37.500 12.19 0.00 38.79 2.29
41 42 4.968181 TCGAGACTTGTATCGCTATTTTCG 59.032 41.667 12.19 0.00 38.79 3.46
42 43 4.968181 CGAGACTTGTATCGCTATTTTCGA 59.032 41.667 4.89 0.00 40.45 3.71
43 44 5.114273 CGAGACTTGTATCGCTATTTTCGAG 59.886 44.000 4.89 0.00 39.47 4.04
44 45 6.132791 AGACTTGTATCGCTATTTTCGAGA 57.867 37.500 0.00 0.00 39.47 4.04
45 46 6.740110 AGACTTGTATCGCTATTTTCGAGAT 58.260 36.000 0.00 0.00 39.47 2.75
46 47 6.638873 AGACTTGTATCGCTATTTTCGAGATG 59.361 38.462 0.00 0.00 39.47 2.90
47 48 6.504398 ACTTGTATCGCTATTTTCGAGATGA 58.496 36.000 0.00 0.00 39.47 2.92
48 49 7.148641 ACTTGTATCGCTATTTTCGAGATGAT 58.851 34.615 0.00 0.00 39.47 2.45
49 50 6.934561 TGTATCGCTATTTTCGAGATGATG 57.065 37.500 0.00 0.00 39.47 3.07
50 51 6.677913 TGTATCGCTATTTTCGAGATGATGA 58.322 36.000 0.00 0.00 39.47 2.92
51 52 6.582672 TGTATCGCTATTTTCGAGATGATGAC 59.417 38.462 0.00 0.00 39.47 3.06
52 53 3.975035 TCGCTATTTTCGAGATGATGACG 59.025 43.478 0.00 0.00 0.00 4.35
53 54 3.975035 CGCTATTTTCGAGATGATGACGA 59.025 43.478 0.00 0.00 0.00 4.20
54 55 4.087789 CGCTATTTTCGAGATGATGACGAG 59.912 45.833 0.00 0.00 37.36 4.18
55 56 5.215903 GCTATTTTCGAGATGATGACGAGA 58.784 41.667 0.00 0.00 37.36 4.04
56 57 5.341993 GCTATTTTCGAGATGATGACGAGAG 59.658 44.000 0.00 0.00 37.36 3.20
57 58 4.965119 TTTTCGAGATGATGACGAGAGA 57.035 40.909 0.00 0.00 37.36 3.10
58 59 3.953874 TTCGAGATGATGACGAGAGAC 57.046 47.619 0.00 0.00 37.36 3.36
59 60 2.214347 TCGAGATGATGACGAGAGACC 58.786 52.381 0.00 0.00 0.00 3.85
60 61 1.943340 CGAGATGATGACGAGAGACCA 59.057 52.381 0.00 0.00 0.00 4.02
61 62 2.286713 CGAGATGATGACGAGAGACCAC 60.287 54.545 0.00 0.00 0.00 4.16
62 63 2.948979 GAGATGATGACGAGAGACCACT 59.051 50.000 0.00 0.00 0.00 4.00
63 64 3.360867 AGATGATGACGAGAGACCACTT 58.639 45.455 0.00 0.00 0.00 3.16
64 65 3.766591 AGATGATGACGAGAGACCACTTT 59.233 43.478 0.00 0.00 0.00 2.66
65 66 3.303881 TGATGACGAGAGACCACTTTG 57.696 47.619 0.00 0.00 0.00 2.77
66 67 2.628178 TGATGACGAGAGACCACTTTGT 59.372 45.455 0.00 0.00 0.00 2.83
67 68 2.509052 TGACGAGAGACCACTTTGTG 57.491 50.000 0.00 0.00 0.00 3.33
68 69 1.754803 TGACGAGAGACCACTTTGTGT 59.245 47.619 0.00 0.00 0.00 3.72
69 70 2.167693 TGACGAGAGACCACTTTGTGTT 59.832 45.455 0.00 0.00 0.00 3.32
70 71 2.540101 GACGAGAGACCACTTTGTGTTG 59.460 50.000 0.00 0.00 0.00 3.33
71 72 1.867233 CGAGAGACCACTTTGTGTTGG 59.133 52.381 0.00 0.00 0.00 3.77
72 73 2.483013 CGAGAGACCACTTTGTGTTGGA 60.483 50.000 0.00 0.00 0.00 3.53
73 74 3.744660 GAGAGACCACTTTGTGTTGGAT 58.255 45.455 0.00 0.00 0.00 3.41
74 75 3.480470 AGAGACCACTTTGTGTTGGATG 58.520 45.455 0.00 0.00 0.00 3.51
75 76 3.136443 AGAGACCACTTTGTGTTGGATGA 59.864 43.478 0.00 0.00 0.00 2.92
76 77 4.074970 GAGACCACTTTGTGTTGGATGAT 58.925 43.478 0.00 0.00 0.00 2.45
77 78 5.013079 AGAGACCACTTTGTGTTGGATGATA 59.987 40.000 0.00 0.00 0.00 2.15
78 79 5.630121 AGACCACTTTGTGTTGGATGATAA 58.370 37.500 0.00 0.00 0.00 1.75
79 80 6.248433 AGACCACTTTGTGTTGGATGATAAT 58.752 36.000 0.00 0.00 0.00 1.28
80 81 6.721208 AGACCACTTTGTGTTGGATGATAATT 59.279 34.615 0.00 0.00 0.00 1.40
81 82 7.888021 AGACCACTTTGTGTTGGATGATAATTA 59.112 33.333 0.00 0.00 0.00 1.40
82 83 8.593945 ACCACTTTGTGTTGGATGATAATTAT 57.406 30.769 0.00 0.00 0.00 1.28
83 84 8.469200 ACCACTTTGTGTTGGATGATAATTATG 58.531 33.333 1.78 0.00 0.00 1.90
84 85 8.685427 CCACTTTGTGTTGGATGATAATTATGA 58.315 33.333 1.78 0.00 0.00 2.15
90 91 9.796180 TGTGTTGGATGATAATTATGATGATGA 57.204 29.630 1.78 0.00 0.00 2.92
92 93 9.796180 TGTTGGATGATAATTATGATGATGACA 57.204 29.630 1.78 0.35 0.00 3.58
105 106 9.787435 TTATGATGATGACATGATTTGATGAGA 57.213 29.630 0.00 0.00 36.82 3.27
106 107 7.492352 TGATGATGACATGATTTGATGAGAC 57.508 36.000 0.00 0.00 36.82 3.36
107 108 7.280356 TGATGATGACATGATTTGATGAGACT 58.720 34.615 0.00 0.00 36.82 3.24
108 109 8.426489 TGATGATGACATGATTTGATGAGACTA 58.574 33.333 0.00 0.00 36.82 2.59
109 110 9.269453 GATGATGACATGATTTGATGAGACTAA 57.731 33.333 0.00 0.00 36.82 2.24
110 111 9.794719 ATGATGACATGATTTGATGAGACTAAT 57.205 29.630 0.00 0.00 35.21 1.73
111 112 9.623000 TGATGACATGATTTGATGAGACTAATT 57.377 29.630 0.00 0.00 0.00 1.40
112 113 9.880064 GATGACATGATTTGATGAGACTAATTG 57.120 33.333 0.00 0.00 0.00 2.32
113 114 8.797350 TGACATGATTTGATGAGACTAATTGT 57.203 30.769 0.00 0.00 0.00 2.71
114 115 9.889128 TGACATGATTTGATGAGACTAATTGTA 57.111 29.630 0.00 0.00 0.00 2.41
202 203 9.941325 ATTCAAATACAAAACAAATATGCAGGA 57.059 25.926 0.00 0.00 0.00 3.86
203 204 9.770097 TTCAAATACAAAACAAATATGCAGGAA 57.230 25.926 0.00 0.00 0.00 3.36
204 205 9.770097 TCAAATACAAAACAAATATGCAGGAAA 57.230 25.926 0.00 0.00 0.00 3.13
237 238 6.402456 AAATAAACTAGTAGTAGCGAGGGG 57.598 41.667 2.50 0.00 0.00 4.79
238 239 2.361643 AACTAGTAGTAGCGAGGGGG 57.638 55.000 2.50 0.00 0.00 5.40
265 266 3.644774 GCAGTAGCGTCTCCTTACC 57.355 57.895 0.00 0.00 0.00 2.85
266 267 0.815734 GCAGTAGCGTCTCCTTACCA 59.184 55.000 0.00 0.00 0.00 3.25
267 268 1.202313 GCAGTAGCGTCTCCTTACCAG 60.202 57.143 0.00 0.00 0.00 4.00
268 269 2.093106 CAGTAGCGTCTCCTTACCAGT 58.907 52.381 0.00 0.00 0.00 4.00
269 270 3.276857 CAGTAGCGTCTCCTTACCAGTA 58.723 50.000 0.00 0.00 0.00 2.74
270 271 3.312973 CAGTAGCGTCTCCTTACCAGTAG 59.687 52.174 0.00 0.00 0.00 2.57
271 272 1.104630 AGCGTCTCCTTACCAGTAGC 58.895 55.000 0.00 0.00 0.00 3.58
272 273 0.248539 GCGTCTCCTTACCAGTAGCG 60.249 60.000 0.00 0.00 0.00 4.26
273 274 0.248539 CGTCTCCTTACCAGTAGCGC 60.249 60.000 0.00 0.00 0.00 5.92
274 275 0.248539 GTCTCCTTACCAGTAGCGCG 60.249 60.000 0.00 0.00 0.00 6.86
275 276 0.679002 TCTCCTTACCAGTAGCGCGT 60.679 55.000 8.43 0.00 0.00 6.01
276 277 0.248539 CTCCTTACCAGTAGCGCGTC 60.249 60.000 8.43 0.00 0.00 5.19
277 278 1.226888 CCTTACCAGTAGCGCGTCC 60.227 63.158 8.43 0.00 0.00 4.79
278 279 1.226888 CTTACCAGTAGCGCGTCCC 60.227 63.158 8.43 0.00 0.00 4.46
279 280 1.940883 CTTACCAGTAGCGCGTCCCA 61.941 60.000 8.43 0.00 0.00 4.37
280 281 1.940883 TTACCAGTAGCGCGTCCCAG 61.941 60.000 8.43 0.00 0.00 4.45
282 283 4.435436 CAGTAGCGCGTCCCAGCA 62.435 66.667 8.43 0.00 36.85 4.41
283 284 3.691342 AGTAGCGCGTCCCAGCAA 61.691 61.111 8.43 0.00 36.85 3.91
284 285 2.740826 GTAGCGCGTCCCAGCAAA 60.741 61.111 8.43 0.00 36.85 3.68
285 286 2.740826 TAGCGCGTCCCAGCAAAC 60.741 61.111 8.43 0.00 36.85 2.93
286 287 3.523087 TAGCGCGTCCCAGCAAACA 62.523 57.895 8.43 0.00 36.85 2.83
287 288 4.389576 GCGCGTCCCAGCAAACAG 62.390 66.667 8.43 0.00 36.85 3.16
288 289 4.389576 CGCGTCCCAGCAAACAGC 62.390 66.667 0.00 0.00 46.19 4.40
297 298 2.564975 GCAAACAGCGCTGCAGAT 59.435 55.556 36.28 17.81 38.48 2.90
298 299 1.796151 GCAAACAGCGCTGCAGATA 59.204 52.632 36.28 0.00 38.48 1.98
299 300 0.168788 GCAAACAGCGCTGCAGATAA 59.831 50.000 36.28 0.00 38.48 1.75
300 301 1.202222 GCAAACAGCGCTGCAGATAAT 60.202 47.619 36.28 13.25 38.48 1.28
301 302 2.032054 GCAAACAGCGCTGCAGATAATA 59.968 45.455 36.28 0.00 38.48 0.98
302 303 3.304257 GCAAACAGCGCTGCAGATAATAT 60.304 43.478 36.28 11.62 38.48 1.28
303 304 4.461405 CAAACAGCGCTGCAGATAATATC 58.539 43.478 36.28 0.00 0.00 1.63
304 305 3.391506 ACAGCGCTGCAGATAATATCA 57.608 42.857 36.28 0.00 0.00 2.15
305 306 3.324117 ACAGCGCTGCAGATAATATCAG 58.676 45.455 36.28 8.75 0.00 2.90
306 307 3.244009 ACAGCGCTGCAGATAATATCAGT 60.244 43.478 36.28 9.53 0.00 3.41
307 308 4.021981 ACAGCGCTGCAGATAATATCAGTA 60.022 41.667 36.28 0.00 0.00 2.74
308 309 4.562000 CAGCGCTGCAGATAATATCAGTAG 59.438 45.833 26.68 6.43 32.98 2.57
309 310 3.305629 GCGCTGCAGATAATATCAGTAGC 59.694 47.826 20.43 20.02 45.94 3.58
311 312 3.305629 GCTGCAGATAATATCAGTAGCGC 59.694 47.826 20.43 0.00 42.41 5.92
312 313 3.849911 TGCAGATAATATCAGTAGCGCC 58.150 45.455 2.29 0.00 0.00 6.53
313 314 3.190874 GCAGATAATATCAGTAGCGCCC 58.809 50.000 2.29 0.00 0.00 6.13
314 315 3.118956 GCAGATAATATCAGTAGCGCCCT 60.119 47.826 2.29 0.00 0.00 5.19
315 316 4.621747 GCAGATAATATCAGTAGCGCCCTT 60.622 45.833 2.29 0.00 0.00 3.95
316 317 5.482908 CAGATAATATCAGTAGCGCCCTTT 58.517 41.667 2.29 0.00 0.00 3.11
317 318 5.578727 CAGATAATATCAGTAGCGCCCTTTC 59.421 44.000 2.29 0.00 0.00 2.62
318 319 2.841442 ATATCAGTAGCGCCCTTTCC 57.159 50.000 2.29 0.00 0.00 3.13
319 320 0.756903 TATCAGTAGCGCCCTTTCCC 59.243 55.000 2.29 0.00 0.00 3.97
320 321 1.271840 ATCAGTAGCGCCCTTTCCCA 61.272 55.000 2.29 0.00 0.00 4.37
321 322 1.002624 CAGTAGCGCCCTTTCCCAA 60.003 57.895 2.29 0.00 0.00 4.12
322 323 0.608035 CAGTAGCGCCCTTTCCCAAA 60.608 55.000 2.29 0.00 0.00 3.28
323 324 0.322546 AGTAGCGCCCTTTCCCAAAG 60.323 55.000 2.29 0.00 38.24 2.77
324 325 0.322187 GTAGCGCCCTTTCCCAAAGA 60.322 55.000 2.29 0.00 41.02 2.52
325 326 0.035439 TAGCGCCCTTTCCCAAAGAG 60.035 55.000 2.29 0.00 41.02 2.85
326 327 2.994671 GCGCCCTTTCCCAAAGAGC 61.995 63.158 0.00 0.00 41.02 4.09
327 328 3.278157 GCCCTTTCCCAAAGAGCG 58.722 61.111 0.00 0.00 41.02 5.03
328 329 2.994671 GCCCTTTCCCAAAGAGCGC 61.995 63.158 0.00 0.00 41.02 5.92
329 330 1.303643 CCCTTTCCCAAAGAGCGCT 60.304 57.895 11.27 11.27 41.02 5.92
330 331 0.035439 CCCTTTCCCAAAGAGCGCTA 60.035 55.000 11.50 0.00 41.02 4.26
331 332 1.087501 CCTTTCCCAAAGAGCGCTAC 58.912 55.000 11.50 4.00 41.02 3.58
332 333 1.610624 CCTTTCCCAAAGAGCGCTACA 60.611 52.381 11.50 0.00 41.02 2.74
333 334 1.734465 CTTTCCCAAAGAGCGCTACAG 59.266 52.381 11.50 0.00 41.02 2.74
334 335 0.673644 TTCCCAAAGAGCGCTACAGC 60.674 55.000 11.50 0.00 37.78 4.40
339 340 2.541762 CCAAAGAGCGCTACAGCTATTC 59.458 50.000 11.50 0.00 46.45 1.75
340 341 3.190079 CAAAGAGCGCTACAGCTATTCA 58.810 45.455 11.50 0.00 46.45 2.57
341 342 3.742433 AAGAGCGCTACAGCTATTCAT 57.258 42.857 11.50 0.00 44.24 2.57
342 343 3.388308 AAGAGCGCTACAGCTATTCATG 58.612 45.455 11.50 0.00 44.24 3.07
343 344 3.181471 AAGAGCGCTACAGCTATTCATGT 60.181 43.478 11.50 0.00 44.24 3.21
344 345 4.038042 AAGAGCGCTACAGCTATTCATGTA 59.962 41.667 11.50 0.00 44.24 2.29
345 346 5.279206 AAGAGCGCTACAGCTATTCATGTAT 60.279 40.000 11.50 0.00 44.24 2.29
346 347 6.071896 AAGAGCGCTACAGCTATTCATGTATA 60.072 38.462 11.50 0.00 44.24 1.47
347 348 5.940603 GCGCTACAGCTATTCATGTATAG 57.059 43.478 13.47 13.47 39.32 1.31
358 359 7.767745 CTATTCATGTATAGCAGTAGCATGG 57.232 40.000 6.44 0.00 45.49 3.66
359 360 4.541973 TCATGTATAGCAGTAGCATGGG 57.458 45.455 0.00 0.00 45.49 4.00
360 361 4.159557 TCATGTATAGCAGTAGCATGGGA 58.840 43.478 0.00 0.00 45.49 4.37
361 362 4.592778 TCATGTATAGCAGTAGCATGGGAA 59.407 41.667 0.00 0.00 45.49 3.97
362 363 5.071653 TCATGTATAGCAGTAGCATGGGAAA 59.928 40.000 0.00 0.00 45.49 3.13
363 364 5.366482 TGTATAGCAGTAGCATGGGAAAA 57.634 39.130 0.00 0.00 45.49 2.29
364 365 5.123227 TGTATAGCAGTAGCATGGGAAAAC 58.877 41.667 0.00 0.00 45.49 2.43
365 366 2.584835 AGCAGTAGCATGGGAAAACA 57.415 45.000 0.00 0.00 45.49 2.83
366 367 2.440409 AGCAGTAGCATGGGAAAACAG 58.560 47.619 0.00 0.00 45.49 3.16
367 368 1.474077 GCAGTAGCATGGGAAAACAGG 59.526 52.381 0.00 0.00 41.58 4.00
370 371 2.125952 GCATGGGAAAACAGGCGC 60.126 61.111 0.00 0.00 38.44 6.53
371 372 2.639327 GCATGGGAAAACAGGCGCT 61.639 57.895 7.64 0.00 38.44 5.92
372 373 1.312371 GCATGGGAAAACAGGCGCTA 61.312 55.000 7.64 0.00 38.44 4.26
373 374 0.451783 CATGGGAAAACAGGCGCTAC 59.548 55.000 7.64 0.00 0.00 3.58
374 375 0.328258 ATGGGAAAACAGGCGCTACT 59.672 50.000 7.64 0.00 0.00 2.57
375 376 0.605319 TGGGAAAACAGGCGCTACTG 60.605 55.000 7.64 10.00 44.03 2.74
376 377 1.502190 GGAAAACAGGCGCTACTGC 59.498 57.895 7.64 0.00 42.21 4.40
377 378 0.955919 GGAAAACAGGCGCTACTGCT 60.956 55.000 7.64 0.00 42.21 4.24
378 379 1.674817 GGAAAACAGGCGCTACTGCTA 60.675 52.381 7.64 0.00 42.21 3.49
379 380 2.280628 GAAAACAGGCGCTACTGCTAT 58.719 47.619 7.64 0.00 42.21 2.97
380 381 3.454375 GAAAACAGGCGCTACTGCTATA 58.546 45.455 7.64 0.00 42.21 1.31
381 382 2.510768 AACAGGCGCTACTGCTATAC 57.489 50.000 7.64 0.00 42.21 1.47
382 383 0.311165 ACAGGCGCTACTGCTATACG 59.689 55.000 7.64 0.00 42.21 3.06
383 384 0.311165 CAGGCGCTACTGCTATACGT 59.689 55.000 7.64 0.00 36.97 3.57
384 385 1.030457 AGGCGCTACTGCTATACGTT 58.970 50.000 7.64 0.00 36.97 3.99
385 386 2.031420 CAGGCGCTACTGCTATACGTTA 60.031 50.000 7.64 0.00 36.97 3.18
386 387 2.225963 AGGCGCTACTGCTATACGTTAG 59.774 50.000 7.64 0.00 36.97 2.34
387 388 2.031333 GGCGCTACTGCTATACGTTAGT 60.031 50.000 7.64 0.00 36.97 2.24
388 389 3.549625 GGCGCTACTGCTATACGTTAGTT 60.550 47.826 7.64 0.00 36.97 2.24
389 390 3.421231 GCGCTACTGCTATACGTTAGTTG 59.579 47.826 0.00 0.00 36.97 3.16
390 391 4.595116 CGCTACTGCTATACGTTAGTTGT 58.405 43.478 0.00 2.46 36.97 3.32
391 392 5.741425 CGCTACTGCTATACGTTAGTTGTA 58.259 41.667 0.00 3.40 36.97 2.41
392 393 5.844914 CGCTACTGCTATACGTTAGTTGTAG 59.155 44.000 19.32 19.32 36.97 2.74
393 394 5.624491 GCTACTGCTATACGTTAGTTGTAGC 59.376 44.000 24.65 24.65 40.59 3.58
394 395 4.595116 ACTGCTATACGTTAGTTGTAGCG 58.405 43.478 0.00 0.00 41.83 4.26
395 396 3.365832 TGCTATACGTTAGTTGTAGCGC 58.634 45.455 0.00 0.00 41.83 5.92
396 397 2.723143 GCTATACGTTAGTTGTAGCGCC 59.277 50.000 2.29 0.00 36.40 6.53
397 398 3.549625 GCTATACGTTAGTTGTAGCGCCT 60.550 47.826 2.29 0.00 36.40 5.52
398 399 3.515330 ATACGTTAGTTGTAGCGCCTT 57.485 42.857 2.29 0.00 36.40 4.35
399 400 4.637483 ATACGTTAGTTGTAGCGCCTTA 57.363 40.909 2.29 0.00 36.40 2.69
400 401 3.515330 ACGTTAGTTGTAGCGCCTTAT 57.485 42.857 2.29 0.00 36.40 1.73
401 402 3.853475 ACGTTAGTTGTAGCGCCTTATT 58.147 40.909 2.29 0.00 36.40 1.40
402 403 4.997565 ACGTTAGTTGTAGCGCCTTATTA 58.002 39.130 2.29 0.00 36.40 0.98
403 404 5.039333 ACGTTAGTTGTAGCGCCTTATTAG 58.961 41.667 2.29 0.00 36.40 1.73
404 405 5.039333 CGTTAGTTGTAGCGCCTTATTAGT 58.961 41.667 2.29 0.00 0.00 2.24
405 406 6.183360 ACGTTAGTTGTAGCGCCTTATTAGTA 60.183 38.462 2.29 0.00 36.40 1.82
406 407 6.359087 CGTTAGTTGTAGCGCCTTATTAGTAG 59.641 42.308 2.29 0.00 0.00 2.57
407 408 4.618965 AGTTGTAGCGCCTTATTAGTAGC 58.381 43.478 2.29 0.00 0.00 3.58
411 412 2.431539 CGCCTTATTAGTAGCGCCG 58.568 57.895 2.29 0.00 42.31 6.46
412 413 1.007336 CGCCTTATTAGTAGCGCCGG 61.007 60.000 2.29 0.00 42.31 6.13
413 414 1.289800 GCCTTATTAGTAGCGCCGGC 61.290 60.000 19.07 19.07 40.37 6.13
414 415 0.032952 CCTTATTAGTAGCGCCGGCA 59.967 55.000 28.98 3.37 43.41 5.69
415 416 1.137513 CTTATTAGTAGCGCCGGCAC 58.862 55.000 28.98 18.62 43.41 5.01
416 417 0.249573 TTATTAGTAGCGCCGGCACC 60.250 55.000 28.98 16.97 43.41 5.01
417 418 2.091102 TATTAGTAGCGCCGGCACCC 62.091 60.000 28.98 14.13 43.41 4.61
429 430 4.129737 GCACCCGCGCTACTGAGA 62.130 66.667 5.56 0.00 0.00 3.27
430 431 2.103143 CACCCGCGCTACTGAGAG 59.897 66.667 5.56 0.00 0.00 3.20
431 432 3.141488 ACCCGCGCTACTGAGAGG 61.141 66.667 5.56 0.00 33.23 3.69
432 433 4.577246 CCCGCGCTACTGAGAGGC 62.577 72.222 5.56 0.00 32.20 4.70
433 434 4.577246 CCGCGCTACTGAGAGGCC 62.577 72.222 5.56 0.00 0.00 5.19
434 435 4.577246 CGCGCTACTGAGAGGCCC 62.577 72.222 5.56 0.00 0.00 5.80
435 436 3.461773 GCGCTACTGAGAGGCCCA 61.462 66.667 0.00 0.00 0.00 5.36
436 437 3.019003 GCGCTACTGAGAGGCCCAA 62.019 63.158 0.00 0.00 0.00 4.12
437 438 1.596934 CGCTACTGAGAGGCCCAAA 59.403 57.895 0.00 0.00 0.00 3.28
438 439 0.036388 CGCTACTGAGAGGCCCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
439 440 1.454201 GCTACTGAGAGGCCCAAAAC 58.546 55.000 0.00 0.00 0.00 2.43
440 441 1.950954 GCTACTGAGAGGCCCAAAACC 60.951 57.143 0.00 0.00 0.00 3.27
441 442 0.696501 TACTGAGAGGCCCAAAACCC 59.303 55.000 0.00 0.00 0.00 4.11
442 443 1.068352 ACTGAGAGGCCCAAAACCCT 61.068 55.000 0.00 0.00 0.00 4.34
443 444 0.322906 CTGAGAGGCCCAAAACCCTC 60.323 60.000 0.00 0.00 46.39 4.30
445 446 3.062466 GAGGCCCAAAACCCTCGC 61.062 66.667 0.00 0.00 38.38 5.03
446 447 3.569200 GAGGCCCAAAACCCTCGCT 62.569 63.158 0.00 0.00 38.38 4.93
447 448 3.373565 GGCCCAAAACCCTCGCTG 61.374 66.667 0.00 0.00 0.00 5.18
448 449 4.056125 GCCCAAAACCCTCGCTGC 62.056 66.667 0.00 0.00 0.00 5.25
449 450 2.282462 CCCAAAACCCTCGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
450 451 2.629656 CCCAAAACCCTCGCTGCTG 61.630 63.158 0.00 0.00 0.00 4.41
451 452 2.256461 CAAAACCCTCGCTGCTGC 59.744 61.111 5.34 5.34 0.00 5.25
452 453 2.113986 AAAACCCTCGCTGCTGCT 59.886 55.556 14.03 0.00 36.97 4.24
453 454 0.955428 CAAAACCCTCGCTGCTGCTA 60.955 55.000 14.03 1.49 36.97 3.49
454 455 0.674895 AAAACCCTCGCTGCTGCTAG 60.675 55.000 14.03 11.79 36.97 3.42
456 457 4.906792 CCCTCGCTGCTGCTAGGC 62.907 72.222 25.28 2.05 46.98 3.93
457 458 3.847602 CCTCGCTGCTGCTAGGCT 61.848 66.667 20.69 0.00 43.65 4.58
458 459 2.186384 CTCGCTGCTGCTAGGCTT 59.814 61.111 14.03 0.00 36.97 4.35
459 460 1.449246 CTCGCTGCTGCTAGGCTTT 60.449 57.895 14.03 0.00 36.97 3.51
460 461 1.003355 TCGCTGCTGCTAGGCTTTT 60.003 52.632 14.03 0.00 36.97 2.27
461 462 0.606401 TCGCTGCTGCTAGGCTTTTT 60.606 50.000 14.03 0.00 36.97 1.94
462 463 0.179179 CGCTGCTGCTAGGCTTTTTC 60.179 55.000 14.03 0.00 36.97 2.29
463 464 0.172127 GCTGCTGCTAGGCTTTTTCC 59.828 55.000 8.53 0.00 36.03 3.13
464 465 0.813821 CTGCTGCTAGGCTTTTTCCC 59.186 55.000 0.00 0.00 0.00 3.97
465 466 0.405585 TGCTGCTAGGCTTTTTCCCT 59.594 50.000 0.00 0.00 36.47 4.20
466 467 1.633432 TGCTGCTAGGCTTTTTCCCTA 59.367 47.619 0.00 0.00 33.88 3.53
473 474 5.678955 CTAGGCTTTTTCCCTAGTAGTGT 57.321 43.478 0.00 0.00 44.47 3.55
474 475 4.995624 AGGCTTTTTCCCTAGTAGTGTT 57.004 40.909 0.00 0.00 0.00 3.32
475 476 7.179076 CTAGGCTTTTTCCCTAGTAGTGTTA 57.821 40.000 0.00 0.00 44.47 2.41
476 477 6.638021 AGGCTTTTTCCCTAGTAGTGTTAT 57.362 37.500 0.00 0.00 0.00 1.89
477 478 7.744678 AGGCTTTTTCCCTAGTAGTGTTATA 57.255 36.000 0.00 0.00 0.00 0.98
478 479 8.154420 AGGCTTTTTCCCTAGTAGTGTTATAA 57.846 34.615 0.00 0.00 0.00 0.98
479 480 8.608598 AGGCTTTTTCCCTAGTAGTGTTATAAA 58.391 33.333 0.00 0.00 0.00 1.40
480 481 8.890718 GGCTTTTTCCCTAGTAGTGTTATAAAG 58.109 37.037 0.00 0.00 0.00 1.85
481 482 9.445878 GCTTTTTCCCTAGTAGTGTTATAAAGT 57.554 33.333 0.00 0.00 0.00 2.66
509 510 7.346751 TCAGTTCTGGCAAAGTTCTTTAATT 57.653 32.000 0.00 0.00 0.00 1.40
512 513 8.542953 CAGTTCTGGCAAAGTTCTTTAATTTTC 58.457 33.333 0.00 0.00 0.00 2.29
526 528 9.528018 TTCTTTAATTTTCTAACAAAGTGCAGG 57.472 29.630 0.00 0.00 0.00 4.85
554 556 4.855340 TGTTGGGAAAGTTCTTCAACTCT 58.145 39.130 20.31 0.00 42.45 3.24
556 558 5.714806 TGTTGGGAAAGTTCTTCAACTCTTT 59.285 36.000 20.31 0.00 42.45 2.52
561 563 7.777910 TGGGAAAGTTCTTCAACTCTTTATTCA 59.222 33.333 0.00 0.00 42.45 2.57
579 581 9.959749 CTTTATTCAGTTTGTTTAGCACCTTAA 57.040 29.630 0.00 0.00 0.00 1.85
616 618 5.733620 ATCATTCACTGTTTCCAGCAAAT 57.266 34.783 0.00 0.00 42.81 2.32
620 622 4.998671 TCACTGTTTCCAGCAAATTTCA 57.001 36.364 0.00 0.00 42.81 2.69
650 652 9.604626 CTGAAAACACTGATAAGCTTCTAAAAG 57.395 33.333 0.00 0.00 35.47 2.27
726 728 7.613801 AGACTACTCTTGCTCTAAAGATCTTGA 59.386 37.037 9.17 0.00 35.67 3.02
730 732 5.784177 TCTTGCTCTAAAGATCTTGACGTT 58.216 37.500 9.17 0.00 31.19 3.99
823 841 5.094387 AGTAATGAAGTTTGAGGAGAGGGA 58.906 41.667 0.00 0.00 0.00 4.20
832 850 6.477253 AGTTTGAGGAGAGGGAAAAGATAAC 58.523 40.000 0.00 0.00 0.00 1.89
836 854 5.360144 TGAGGAGAGGGAAAAGATAACGTAG 59.640 44.000 0.00 0.00 0.00 3.51
837 855 4.650131 AGGAGAGGGAAAAGATAACGTAGG 59.350 45.833 0.00 0.00 0.00 3.18
838 856 4.370049 GAGAGGGAAAAGATAACGTAGGC 58.630 47.826 0.00 0.00 0.00 3.93
839 857 3.773119 AGAGGGAAAAGATAACGTAGGCA 59.227 43.478 0.00 0.00 0.00 4.75
840 858 4.409247 AGAGGGAAAAGATAACGTAGGCAT 59.591 41.667 0.00 0.00 0.00 4.40
841 859 4.451900 AGGGAAAAGATAACGTAGGCATG 58.548 43.478 0.00 0.00 0.00 4.06
842 860 3.003378 GGGAAAAGATAACGTAGGCATGC 59.997 47.826 9.90 9.90 0.00 4.06
843 861 3.625764 GGAAAAGATAACGTAGGCATGCA 59.374 43.478 21.36 0.00 0.00 3.96
844 862 4.275936 GGAAAAGATAACGTAGGCATGCAT 59.724 41.667 21.36 16.31 0.00 3.96
845 863 4.818534 AAAGATAACGTAGGCATGCATG 57.181 40.909 22.70 22.70 0.00 4.06
846 864 3.475566 AGATAACGTAGGCATGCATGT 57.524 42.857 26.79 11.59 0.00 3.21
847 865 3.133691 AGATAACGTAGGCATGCATGTG 58.866 45.455 26.79 11.95 0.00 3.21
848 866 2.394930 TAACGTAGGCATGCATGTGT 57.605 45.000 26.79 16.76 0.00 3.72
849 867 1.533625 AACGTAGGCATGCATGTGTT 58.466 45.000 26.79 17.82 0.00 3.32
850 868 2.394930 ACGTAGGCATGCATGTGTTA 57.605 45.000 26.79 14.16 0.00 2.41
851 869 2.279741 ACGTAGGCATGCATGTGTTAG 58.720 47.619 26.79 17.58 0.00 2.34
852 870 2.279741 CGTAGGCATGCATGTGTTAGT 58.720 47.619 26.79 8.77 0.00 2.24
853 871 2.030823 CGTAGGCATGCATGTGTTAGTG 59.969 50.000 26.79 8.52 0.00 2.74
854 872 0.813184 AGGCATGCATGTGTTAGTGC 59.187 50.000 26.79 12.15 41.61 4.40
885 903 5.649557 CATGTGTTGTGTGAGAAGGAAAAA 58.350 37.500 0.00 0.00 0.00 1.94
944 962 6.861572 TCGATGAGTTAGGAAACGCTATATTG 59.138 38.462 0.00 0.00 40.73 1.90
1036 1055 2.047274 CGTCCACATCGGCAACCT 60.047 61.111 0.00 0.00 33.14 3.50
1037 1056 1.216977 CGTCCACATCGGCAACCTA 59.783 57.895 0.00 0.00 33.14 3.08
1050 1069 1.961133 CAACCTACCCTCCCTAACCA 58.039 55.000 0.00 0.00 0.00 3.67
1052 1071 0.794934 ACCTACCCTCCCTAACCACA 59.205 55.000 0.00 0.00 0.00 4.17
1053 1072 1.152701 ACCTACCCTCCCTAACCACAA 59.847 52.381 0.00 0.00 0.00 3.33
1078 1097 4.671590 TGAGGCGAGGGTCACCGA 62.672 66.667 0.00 0.00 43.47 4.69
1173 1192 5.076873 AGCCACCAAAACAAGTACATGTAT 58.923 37.500 9.18 0.00 32.02 2.29
1179 1198 5.163663 CCAAAACAAGTACATGTATGCCGAT 60.164 40.000 9.18 0.00 32.02 4.18
1341 1360 4.838152 CTCATGGGCGTCACCGGG 62.838 72.222 6.32 0.00 40.62 5.73
1488 1507 4.368808 CCGTTGCGCAACTCCGTG 62.369 66.667 40.70 28.22 39.08 4.94
1503 1522 2.938086 CGTGACCCATGACGTCCCA 61.938 63.158 14.12 0.00 0.00 4.37
1554 1573 1.211818 GCATCGAGATCGTGCAGGTC 61.212 60.000 18.32 3.84 41.97 3.85
1857 1881 2.477375 CACCGACTTACGCTTTTGCTAA 59.523 45.455 0.00 0.00 44.80 3.09
1872 1896 7.096551 GCTTTTGCTAATTTTGGTTCTCCATA 58.903 34.615 0.00 0.00 42.19 2.74
1873 1897 7.765819 GCTTTTGCTAATTTTGGTTCTCCATAT 59.234 33.333 0.00 0.00 42.19 1.78
1974 1998 1.875514 CATATTGCGGATGACAGTGGG 59.124 52.381 0.00 0.00 0.00 4.61
2000 2024 2.444706 TGAGGGAGATGAGGGGCG 60.445 66.667 0.00 0.00 0.00 6.13
2058 2082 0.613292 TGGAGAGACTGCAGGAGGAC 60.613 60.000 19.93 6.31 0.00 3.85
2189 2213 2.067013 GCACGAGTCCTCAAAAGGTAC 58.933 52.381 0.00 0.00 43.82 3.34
2201 2225 5.326200 TCAAAAGGTACGAGAGAGGATTC 57.674 43.478 0.00 0.00 0.00 2.52
2222 2246 1.141019 CACCATACACGGGACCTCG 59.859 63.158 0.00 0.00 0.00 4.63
2334 2359 6.586463 TGCTATTCTTTAGTCACTGAGTTTCG 59.414 38.462 0.00 0.00 0.00 3.46
2354 2379 5.295431 TCGTTCAAACAAATAGATGCCTG 57.705 39.130 0.00 0.00 0.00 4.85
2459 2484 5.224562 TGTTTTATTCGGTTCCGCATAAG 57.775 39.130 13.68 0.00 31.72 1.73
2462 2487 6.036300 TGTTTTATTCGGTTCCGCATAAGTAG 59.964 38.462 13.68 0.00 31.72 2.57
2464 2489 3.598019 TTCGGTTCCGCATAAGTAGTT 57.402 42.857 6.35 0.00 0.00 2.24
2539 2564 4.682860 ACTGTTTACCTACGTGTTTCATCG 59.317 41.667 0.00 0.00 0.00 3.84
2564 2589 8.308320 CGTGTGTTAGTGTGTTTTAAATTGTTC 58.692 33.333 0.00 0.00 0.00 3.18
2640 2665 0.037326 GGCATCGTGTTCCAGAGTGA 60.037 55.000 0.00 0.00 0.00 3.41
2668 2715 8.265998 CCATCGTGAATTTTAAAACTTGTTGAC 58.734 33.333 1.97 0.00 0.00 3.18
2700 2747 5.399604 AAAGTGGTCTCGTTTTAAAGTCG 57.600 39.130 8.04 8.04 0.00 4.18
2748 2795 6.275335 CAAATGGATCATAAAATGAACGCCT 58.725 36.000 0.00 0.00 43.50 5.52
2803 2850 7.038729 TGGGAATAAAACAAAATACTGGCATGA 60.039 33.333 0.00 0.00 0.00 3.07
2811 2858 4.508551 AAATACTGGCATGAGATGGTGA 57.491 40.909 0.00 0.00 0.00 4.02
2817 2864 2.029623 GGCATGAGATGGTGAAGCATT 58.970 47.619 0.00 0.00 0.00 3.56
2865 2914 4.521130 TGACCAACTAAGCAGTAGTCAG 57.479 45.455 6.10 2.39 42.55 3.51
2872 2921 5.730296 ACTAAGCAGTAGTCAGTGAATGT 57.270 39.130 2.72 0.00 38.84 2.71
2876 2925 4.437239 AGCAGTAGTCAGTGAATGTATGC 58.563 43.478 14.70 14.70 0.00 3.14
2913 2962 3.680620 ATGGCCGCTACATGCACGT 62.681 57.895 0.00 0.00 43.06 4.49
2917 2966 1.637934 CCGCTACATGCACGTGATG 59.362 57.895 22.23 20.61 43.06 3.07
2918 2967 1.637934 CGCTACATGCACGTGATGG 59.362 57.895 22.23 9.52 43.06 3.51
2919 2968 1.083806 CGCTACATGCACGTGATGGT 61.084 55.000 22.23 15.11 43.06 3.55
2920 2969 1.801025 CGCTACATGCACGTGATGGTA 60.801 52.381 22.23 15.43 43.06 3.25
2921 2970 1.860950 GCTACATGCACGTGATGGTAG 59.139 52.381 22.23 23.75 42.31 3.18
2933 2982 3.679917 CGTGATGGTAGACATGCCTTTCT 60.680 47.826 0.00 0.00 40.72 2.52
2959 3008 8.939932 TCCAAAAGGTACACATATATGGACATA 58.060 33.333 16.96 1.32 29.93 2.29
3005 3054 1.304952 CTCGGTTTATGGCCCCCAA 59.695 57.895 0.00 0.00 36.95 4.12
3033 3082 6.486657 GGATTGTGATAAAATCCGATTCCTCA 59.513 38.462 0.00 0.00 42.68 3.86
3151 3200 3.610114 GCAACCTTAATAGGCGCATGATG 60.610 47.826 10.83 0.00 46.22 3.07
3182 3231 9.787435 AGTTCAATAAAGTGGTTAGTGATGTTA 57.213 29.630 0.00 0.00 44.06 2.41
3209 3258 4.202000 TGCATGATGTTAACCTTAATGGCG 60.202 41.667 2.48 0.00 40.22 5.69
3274 3323 1.753930 AGATTGATCGCATGTTGGCA 58.246 45.000 0.00 0.00 0.00 4.92
3282 3331 3.113745 CATGTTGGCATCTCCGGC 58.886 61.111 0.00 0.00 37.80 6.13
3338 3387 2.355716 GGAATTTCCTCGACCACATCCA 60.356 50.000 8.25 0.00 32.53 3.41
3339 3388 2.698855 ATTTCCTCGACCACATCCAG 57.301 50.000 0.00 0.00 0.00 3.86
3382 3431 2.923020 CACAGTTCACAAAGTTGTTGGC 59.077 45.455 0.00 0.00 39.91 4.52
3472 3521 2.286872 CAGCCCTCTGTGCTATTTCTG 58.713 52.381 0.00 0.00 36.81 3.02
3482 3531 1.291132 GCTATTTCTGACCCGCTGAC 58.709 55.000 0.00 0.00 0.00 3.51
3484 3533 0.174845 TATTTCTGACCCGCTGACCG 59.825 55.000 0.00 0.00 0.00 4.79
3621 3718 2.746362 GTTGCACTCTCCATTTCTCTGG 59.254 50.000 0.00 0.00 37.66 3.86
3678 3777 3.253432 GGACTTTGTTCAGTGGATGGAAC 59.747 47.826 0.00 0.00 42.82 3.62
3745 3844 4.504858 ACGCCAACCTCAACTTATAGAAG 58.495 43.478 0.00 0.00 38.76 2.85
3766 3865 7.771183 AGAAGATCTGATGAGTTTGACTCTAC 58.229 38.462 9.27 4.51 45.27 2.59
3776 3875 5.815740 TGAGTTTGACTCTACGAAAAAGCTT 59.184 36.000 9.27 0.00 45.27 3.74
3925 4027 3.867857 TCCACATTATTGACTGCGCTAA 58.132 40.909 9.73 0.00 0.00 3.09
4009 4118 8.653338 CAGTGGCAAGATCTTTTTCATAAAATG 58.347 33.333 4.86 0.00 33.05 2.32
4237 4346 0.759346 AGGTGAAGAGCCGTGAAACT 59.241 50.000 0.00 0.00 31.75 2.66
4272 4381 7.867445 TTATTTCTCAGATTTTTGGTTTCGC 57.133 32.000 0.00 0.00 0.00 4.70
4275 4384 4.389374 TCTCAGATTTTTGGTTTCGCTCT 58.611 39.130 0.00 0.00 0.00 4.09
4277 4386 5.049405 TCTCAGATTTTTGGTTTCGCTCTTC 60.049 40.000 0.00 0.00 0.00 2.87
4525 5064 2.234414 GTGGGTGGAACGACAGGTATTA 59.766 50.000 0.00 0.00 38.12 0.98
4530 5069 3.924686 GTGGAACGACAGGTATTACACAG 59.075 47.826 0.00 0.00 0.00 3.66
4533 5072 4.624452 GGAACGACAGGTATTACACAGAAC 59.376 45.833 0.00 0.00 0.00 3.01
4535 5074 4.553323 ACGACAGGTATTACACAGAACAC 58.447 43.478 0.00 0.00 0.00 3.32
4551 5169 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4552 5170 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4553 5171 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4554 5172 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4555 5173 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4556 5174 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4557 5175 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4558 5176 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4559 5177 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4560 5178 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4561 5179 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4562 5180 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4563 5181 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4564 5182 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4565 5183 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4566 5184 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4894 5730 4.229096 CACCGAATCCAACAAGTCAAATG 58.771 43.478 0.00 0.00 0.00 2.32
4913 5749 5.378292 AATGTAACAAACACACACACACA 57.622 34.783 0.00 0.00 42.09 3.72
4914 5750 4.148563 TGTAACAAACACACACACACAC 57.851 40.909 0.00 0.00 31.43 3.82
4915 5751 3.564225 TGTAACAAACACACACACACACA 59.436 39.130 0.00 0.00 31.43 3.72
4916 5752 3.717400 AACAAACACACACACACACAA 57.283 38.095 0.00 0.00 0.00 3.33
4917 5753 3.006659 ACAAACACACACACACACAAC 57.993 42.857 0.00 0.00 0.00 3.32
4918 5754 1.975362 CAAACACACACACACACAACG 59.025 47.619 0.00 0.00 0.00 4.10
4919 5755 1.514003 AACACACACACACACAACGA 58.486 45.000 0.00 0.00 0.00 3.85
4920 5756 1.514003 ACACACACACACACAACGAA 58.486 45.000 0.00 0.00 0.00 3.85
4921 5757 2.080693 ACACACACACACACAACGAAT 58.919 42.857 0.00 0.00 0.00 3.34
4922 5758 2.095213 ACACACACACACACAACGAATC 59.905 45.455 0.00 0.00 0.00 2.52
4923 5759 1.668751 ACACACACACACAACGAATCC 59.331 47.619 0.00 0.00 0.00 3.01
4924 5760 0.934496 ACACACACACAACGAATCCG 59.066 50.000 0.00 0.00 42.50 4.18
4925 5761 1.213491 CACACACACAACGAATCCGA 58.787 50.000 0.00 0.00 39.50 4.55
4926 5762 1.070843 CACACACACAACGAATCCGAC 60.071 52.381 0.00 0.00 39.50 4.79
4927 5763 1.213491 CACACACAACGAATCCGACA 58.787 50.000 0.00 0.00 39.50 4.35
4928 5764 1.595328 CACACACAACGAATCCGACAA 59.405 47.619 0.00 0.00 39.50 3.18
4929 5765 1.864711 ACACACAACGAATCCGACAAG 59.135 47.619 0.00 0.00 39.50 3.16
4930 5766 1.864711 CACACAACGAATCCGACAAGT 59.135 47.619 0.00 0.00 39.50 3.16
4931 5767 2.096909 CACACAACGAATCCGACAAGTC 60.097 50.000 0.00 0.00 39.50 3.01
4932 5768 2.131972 CACAACGAATCCGACAAGTCA 58.868 47.619 0.72 0.00 39.50 3.41
4933 5769 2.542178 CACAACGAATCCGACAAGTCAA 59.458 45.455 0.72 0.00 39.50 3.18
4934 5770 3.001838 CACAACGAATCCGACAAGTCAAA 59.998 43.478 0.72 0.00 39.50 2.69
4935 5771 3.813166 ACAACGAATCCGACAAGTCAAAT 59.187 39.130 0.72 0.00 39.50 2.32
4936 5772 4.992319 ACAACGAATCCGACAAGTCAAATA 59.008 37.500 0.72 0.00 39.50 1.40
4937 5773 5.642063 ACAACGAATCCGACAAGTCAAATAT 59.358 36.000 0.72 0.00 39.50 1.28
4938 5774 6.814644 ACAACGAATCCGACAAGTCAAATATA 59.185 34.615 0.72 0.00 39.50 0.86
4939 5775 7.332430 ACAACGAATCCGACAAGTCAAATATAA 59.668 33.333 0.72 0.00 39.50 0.98
4940 5776 7.230466 ACGAATCCGACAAGTCAAATATAAC 57.770 36.000 0.72 0.00 39.50 1.89
4941 5777 6.814644 ACGAATCCGACAAGTCAAATATAACA 59.185 34.615 0.72 0.00 39.50 2.41
4942 5778 7.332430 ACGAATCCGACAAGTCAAATATAACAA 59.668 33.333 0.72 0.00 39.50 2.83
4943 5779 8.172484 CGAATCCGACAAGTCAAATATAACAAA 58.828 33.333 0.72 0.00 38.22 2.83
4944 5780 9.274065 GAATCCGACAAGTCAAATATAACAAAC 57.726 33.333 0.72 0.00 0.00 2.93
4945 5781 7.731882 TCCGACAAGTCAAATATAACAAACA 57.268 32.000 0.72 0.00 0.00 2.83
4946 5782 7.577979 TCCGACAAGTCAAATATAACAAACAC 58.422 34.615 0.72 0.00 0.00 3.32
4947 5783 7.226918 TCCGACAAGTCAAATATAACAAACACA 59.773 33.333 0.72 0.00 0.00 3.72
4948 5784 7.322699 CCGACAAGTCAAATATAACAAACACAC 59.677 37.037 0.72 0.00 0.00 3.82
4949 5785 7.853437 CGACAAGTCAAATATAACAAACACACA 59.147 33.333 0.72 0.00 0.00 3.72
4950 5786 8.850454 ACAAGTCAAATATAACAAACACACAC 57.150 30.769 0.00 0.00 0.00 3.82
4951 5787 8.462811 ACAAGTCAAATATAACAAACACACACA 58.537 29.630 0.00 0.00 0.00 3.72
4952 5788 8.742188 CAAGTCAAATATAACAAACACACACAC 58.258 33.333 0.00 0.00 0.00 3.82
4953 5789 7.990917 AGTCAAATATAACAAACACACACACA 58.009 30.769 0.00 0.00 0.00 3.72
4954 5790 7.913297 AGTCAAATATAACAAACACACACACAC 59.087 33.333 0.00 0.00 0.00 3.82
4955 5791 7.698550 GTCAAATATAACAAACACACACACACA 59.301 33.333 0.00 0.00 0.00 3.72
4956 5792 7.698550 TCAAATATAACAAACACACACACACAC 59.301 33.333 0.00 0.00 0.00 3.82
4957 5793 6.685527 ATATAACAAACACACACACACACA 57.314 33.333 0.00 0.00 0.00 3.72
4958 5794 2.697431 ACAAACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
4959 5795 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
4960 5796 2.359214 ACAAACACACACACACACACAA 59.641 40.909 0.00 0.00 0.00 3.33
4961 5797 3.005261 ACAAACACACACACACACACAAT 59.995 39.130 0.00 0.00 0.00 2.71
5120 5956 2.867624 TGGCATTCATATCCTTGCTCC 58.132 47.619 0.00 0.00 35.46 4.70
5194 6030 6.924913 ACCTGATTTCTATGCTGCTATCTA 57.075 37.500 0.00 0.00 0.00 1.98
5391 6507 2.625823 CCGTCCTGCATGGCGTTTT 61.626 57.895 14.80 0.00 34.92 2.43
5399 6515 2.419673 CTGCATGGCGTTTTCTGTATCA 59.580 45.455 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.199154 AGTCTCGATTACTTGCAAATACATCG 59.801 38.462 18.05 18.05 0.00 3.84
1 2 7.470289 AGTCTCGATTACTTGCAAATACATC 57.530 36.000 0.00 0.92 0.00 3.06
2 3 7.688372 CAAGTCTCGATTACTTGCAAATACAT 58.312 34.615 21.08 0.00 45.15 2.29
3 4 7.060600 CAAGTCTCGATTACTTGCAAATACA 57.939 36.000 21.08 0.00 45.15 2.29
12 13 5.502153 AGCGATACAAGTCTCGATTACTT 57.498 39.130 11.46 7.33 37.67 2.24
13 14 6.804770 ATAGCGATACAAGTCTCGATTACT 57.195 37.500 11.46 2.68 37.05 2.24
14 15 7.854934 AAATAGCGATACAAGTCTCGATTAC 57.145 36.000 11.46 0.00 37.05 1.89
15 16 7.322938 CGAAAATAGCGATACAAGTCTCGATTA 59.677 37.037 11.46 4.34 37.05 1.75
16 17 6.142480 CGAAAATAGCGATACAAGTCTCGATT 59.858 38.462 11.46 1.81 37.05 3.34
17 18 5.625721 CGAAAATAGCGATACAAGTCTCGAT 59.374 40.000 11.46 7.90 37.05 3.59
18 19 4.968181 CGAAAATAGCGATACAAGTCTCGA 59.032 41.667 11.46 0.00 37.05 4.04
19 20 4.968181 TCGAAAATAGCGATACAAGTCTCG 59.032 41.667 3.94 3.94 37.92 4.04
20 21 6.200100 TCTCGAAAATAGCGATACAAGTCTC 58.800 40.000 0.00 0.00 37.13 3.36
21 22 6.132791 TCTCGAAAATAGCGATACAAGTCT 57.867 37.500 0.00 0.00 37.13 3.24
22 23 6.637254 TCATCTCGAAAATAGCGATACAAGTC 59.363 38.462 0.00 0.00 37.13 3.01
23 24 6.504398 TCATCTCGAAAATAGCGATACAAGT 58.496 36.000 0.00 0.00 37.13 3.16
24 25 6.993175 TCATCTCGAAAATAGCGATACAAG 57.007 37.500 0.00 0.00 37.13 3.16
25 26 7.114953 GTCATCATCTCGAAAATAGCGATACAA 59.885 37.037 0.00 0.00 37.13 2.41
26 27 6.582672 GTCATCATCTCGAAAATAGCGATACA 59.417 38.462 0.00 0.00 37.13 2.29
27 28 6.237071 CGTCATCATCTCGAAAATAGCGATAC 60.237 42.308 0.00 0.00 37.13 2.24
28 29 5.795441 CGTCATCATCTCGAAAATAGCGATA 59.205 40.000 0.00 0.00 37.13 2.92
29 30 4.618912 CGTCATCATCTCGAAAATAGCGAT 59.381 41.667 0.00 0.00 37.13 4.58
30 31 3.975035 CGTCATCATCTCGAAAATAGCGA 59.025 43.478 0.00 0.00 36.23 4.93
31 32 3.975035 TCGTCATCATCTCGAAAATAGCG 59.025 43.478 0.00 0.00 0.00 4.26
32 33 5.215903 TCTCGTCATCATCTCGAAAATAGC 58.784 41.667 0.00 0.00 33.32 2.97
33 34 6.577055 GTCTCTCGTCATCATCTCGAAAATAG 59.423 42.308 0.00 0.00 33.32 1.73
34 35 6.431278 GTCTCTCGTCATCATCTCGAAAATA 58.569 40.000 0.00 0.00 33.32 1.40
35 36 5.277825 GTCTCTCGTCATCATCTCGAAAAT 58.722 41.667 0.00 0.00 33.32 1.82
36 37 4.438880 GGTCTCTCGTCATCATCTCGAAAA 60.439 45.833 0.00 0.00 33.32 2.29
37 38 3.065510 GGTCTCTCGTCATCATCTCGAAA 59.934 47.826 0.00 0.00 33.32 3.46
38 39 2.614520 GGTCTCTCGTCATCATCTCGAA 59.385 50.000 0.00 0.00 33.32 3.71
39 40 2.214347 GGTCTCTCGTCATCATCTCGA 58.786 52.381 0.00 0.00 0.00 4.04
40 41 1.943340 TGGTCTCTCGTCATCATCTCG 59.057 52.381 0.00 0.00 0.00 4.04
41 42 2.948979 AGTGGTCTCTCGTCATCATCTC 59.051 50.000 0.00 0.00 0.00 2.75
42 43 3.011566 AGTGGTCTCTCGTCATCATCT 57.988 47.619 0.00 0.00 0.00 2.90
43 44 3.791973 AAGTGGTCTCTCGTCATCATC 57.208 47.619 0.00 0.00 0.00 2.92
44 45 3.259374 ACAAAGTGGTCTCTCGTCATCAT 59.741 43.478 0.00 0.00 0.00 2.45
45 46 2.628178 ACAAAGTGGTCTCTCGTCATCA 59.372 45.455 0.00 0.00 0.00 3.07
46 47 2.989840 CACAAAGTGGTCTCTCGTCATC 59.010 50.000 0.00 0.00 0.00 2.92
47 48 2.365617 ACACAAAGTGGTCTCTCGTCAT 59.634 45.455 1.93 0.00 37.94 3.06
48 49 1.754803 ACACAAAGTGGTCTCTCGTCA 59.245 47.619 1.93 0.00 37.94 4.35
49 50 2.510768 ACACAAAGTGGTCTCTCGTC 57.489 50.000 1.93 0.00 37.94 4.20
50 51 2.550978 CAACACAAAGTGGTCTCTCGT 58.449 47.619 1.93 0.00 37.94 4.18
51 52 1.867233 CCAACACAAAGTGGTCTCTCG 59.133 52.381 1.93 0.00 37.94 4.04
52 53 3.194005 TCCAACACAAAGTGGTCTCTC 57.806 47.619 1.93 0.00 37.94 3.20
53 54 3.136443 TCATCCAACACAAAGTGGTCTCT 59.864 43.478 1.93 0.00 37.94 3.10
54 55 3.476552 TCATCCAACACAAAGTGGTCTC 58.523 45.455 1.93 0.00 37.94 3.36
55 56 3.576078 TCATCCAACACAAAGTGGTCT 57.424 42.857 1.93 0.00 37.94 3.85
56 57 5.957842 TTATCATCCAACACAAAGTGGTC 57.042 39.130 1.93 0.00 37.94 4.02
57 58 6.916360 AATTATCATCCAACACAAAGTGGT 57.084 33.333 1.93 0.00 37.94 4.16
58 59 8.685427 TCATAATTATCATCCAACACAAAGTGG 58.315 33.333 0.00 0.00 37.94 4.00
64 65 9.796180 TCATCATCATAATTATCATCCAACACA 57.204 29.630 0.00 0.00 0.00 3.72
66 67 9.796180 TGTCATCATCATAATTATCATCCAACA 57.204 29.630 0.00 0.00 0.00 3.33
79 80 9.787435 TCTCATCAAATCATGTCATCATCATAA 57.213 29.630 0.00 0.00 31.15 1.90
80 81 9.216117 GTCTCATCAAATCATGTCATCATCATA 57.784 33.333 0.00 0.00 31.15 2.15
81 82 7.939588 AGTCTCATCAAATCATGTCATCATCAT 59.060 33.333 0.00 0.00 31.15 2.45
82 83 7.280356 AGTCTCATCAAATCATGTCATCATCA 58.720 34.615 0.00 0.00 31.15 3.07
83 84 7.731882 AGTCTCATCAAATCATGTCATCATC 57.268 36.000 0.00 0.00 31.15 2.92
84 85 9.794719 ATTAGTCTCATCAAATCATGTCATCAT 57.205 29.630 0.00 0.00 34.21 2.45
85 86 9.623000 AATTAGTCTCATCAAATCATGTCATCA 57.377 29.630 0.00 0.00 0.00 3.07
86 87 9.880064 CAATTAGTCTCATCAAATCATGTCATC 57.120 33.333 0.00 0.00 0.00 2.92
87 88 9.404848 ACAATTAGTCTCATCAAATCATGTCAT 57.595 29.630 0.00 0.00 0.00 3.06
88 89 8.797350 ACAATTAGTCTCATCAAATCATGTCA 57.203 30.769 0.00 0.00 0.00 3.58
176 177 9.941325 TCCTGCATATTTGTTTTGTATTTGAAT 57.059 25.926 0.00 0.00 0.00 2.57
177 178 9.770097 TTCCTGCATATTTGTTTTGTATTTGAA 57.230 25.926 0.00 0.00 0.00 2.69
178 179 9.770097 TTTCCTGCATATTTGTTTTGTATTTGA 57.230 25.926 0.00 0.00 0.00 2.69
211 212 8.583296 CCCCTCGCTACTACTAGTTTATTTATT 58.417 37.037 0.00 0.00 0.00 1.40
212 213 7.178097 CCCCCTCGCTACTACTAGTTTATTTAT 59.822 40.741 0.00 0.00 0.00 1.40
213 214 6.491403 CCCCCTCGCTACTACTAGTTTATTTA 59.509 42.308 0.00 0.00 0.00 1.40
214 215 5.303845 CCCCCTCGCTACTACTAGTTTATTT 59.696 44.000 0.00 0.00 0.00 1.40
215 216 4.831710 CCCCCTCGCTACTACTAGTTTATT 59.168 45.833 0.00 0.00 0.00 1.40
216 217 4.405548 CCCCCTCGCTACTACTAGTTTAT 58.594 47.826 0.00 0.00 0.00 1.40
217 218 3.825328 CCCCCTCGCTACTACTAGTTTA 58.175 50.000 0.00 0.00 0.00 2.01
218 219 2.664015 CCCCCTCGCTACTACTAGTTT 58.336 52.381 0.00 0.00 0.00 2.66
219 220 2.361643 CCCCCTCGCTACTACTAGTT 57.638 55.000 0.00 0.00 0.00 2.24
235 236 1.947456 CGCTACTGCTAAATTTCCCCC 59.053 52.381 0.00 0.00 36.97 5.40
236 237 2.612672 GACGCTACTGCTAAATTTCCCC 59.387 50.000 0.00 0.00 36.97 4.81
237 238 3.532542 AGACGCTACTGCTAAATTTCCC 58.467 45.455 0.00 0.00 36.97 3.97
238 239 3.556365 GGAGACGCTACTGCTAAATTTCC 59.444 47.826 0.00 0.00 36.97 3.13
239 240 4.434520 AGGAGACGCTACTGCTAAATTTC 58.565 43.478 0.00 0.00 36.84 2.17
240 241 4.473477 AGGAGACGCTACTGCTAAATTT 57.527 40.909 0.00 0.00 36.84 1.82
241 242 4.473477 AAGGAGACGCTACTGCTAAATT 57.527 40.909 2.09 0.00 37.58 1.82
242 243 4.202131 GGTAAGGAGACGCTACTGCTAAAT 60.202 45.833 2.09 0.00 37.58 1.40
243 244 3.129988 GGTAAGGAGACGCTACTGCTAAA 59.870 47.826 2.09 0.00 37.58 1.85
244 245 2.686915 GGTAAGGAGACGCTACTGCTAA 59.313 50.000 2.09 0.00 37.58 3.09
245 246 2.295885 GGTAAGGAGACGCTACTGCTA 58.704 52.381 2.09 0.00 37.58 3.49
246 247 1.104630 GGTAAGGAGACGCTACTGCT 58.895 55.000 0.00 0.00 40.11 4.24
247 248 0.815734 TGGTAAGGAGACGCTACTGC 59.184 55.000 0.00 0.00 0.00 4.40
248 249 2.093106 ACTGGTAAGGAGACGCTACTG 58.907 52.381 0.00 0.00 0.00 2.74
249 250 2.510928 ACTGGTAAGGAGACGCTACT 57.489 50.000 0.00 0.00 0.00 2.57
250 251 2.033174 GCTACTGGTAAGGAGACGCTAC 59.967 54.545 0.00 0.00 36.30 3.58
251 252 2.295885 GCTACTGGTAAGGAGACGCTA 58.704 52.381 0.00 0.00 36.30 4.26
252 253 1.104630 GCTACTGGTAAGGAGACGCT 58.895 55.000 0.00 0.00 36.30 5.07
253 254 0.248539 CGCTACTGGTAAGGAGACGC 60.249 60.000 0.00 0.00 36.30 5.19
254 255 0.248539 GCGCTACTGGTAAGGAGACG 60.249 60.000 0.00 0.00 36.30 4.18
255 256 0.248539 CGCGCTACTGGTAAGGAGAC 60.249 60.000 5.56 0.00 36.30 3.36
256 257 0.679002 ACGCGCTACTGGTAAGGAGA 60.679 55.000 5.73 0.00 36.30 3.71
257 258 0.248539 GACGCGCTACTGGTAAGGAG 60.249 60.000 5.73 0.00 37.44 3.69
258 259 1.660560 GGACGCGCTACTGGTAAGGA 61.661 60.000 5.73 0.00 0.00 3.36
259 260 1.226888 GGACGCGCTACTGGTAAGG 60.227 63.158 5.73 0.00 0.00 2.69
260 261 1.226888 GGGACGCGCTACTGGTAAG 60.227 63.158 5.73 0.00 0.00 2.34
261 262 1.940883 CTGGGACGCGCTACTGGTAA 61.941 60.000 5.73 0.00 0.00 2.85
262 263 2.361483 TGGGACGCGCTACTGGTA 60.361 61.111 5.73 0.00 0.00 3.25
263 264 3.760035 CTGGGACGCGCTACTGGT 61.760 66.667 5.73 0.00 0.00 4.00
265 266 3.932580 TTGCTGGGACGCGCTACTG 62.933 63.158 5.73 1.15 0.00 2.74
266 267 3.234630 TTTGCTGGGACGCGCTACT 62.235 57.895 5.73 0.00 0.00 2.57
267 268 2.740826 TTTGCTGGGACGCGCTAC 60.741 61.111 5.73 0.00 0.00 3.58
268 269 2.740826 GTTTGCTGGGACGCGCTA 60.741 61.111 5.73 0.00 0.00 4.26
269 270 4.927782 TGTTTGCTGGGACGCGCT 62.928 61.111 5.73 0.00 0.00 5.92
270 271 4.389576 CTGTTTGCTGGGACGCGC 62.390 66.667 5.73 0.00 0.00 6.86
271 272 4.389576 GCTGTTTGCTGGGACGCG 62.390 66.667 3.53 3.53 38.95 6.01
272 273 4.389576 CGCTGTTTGCTGGGACGC 62.390 66.667 0.00 0.00 40.11 5.19
273 274 4.389576 GCGCTGTTTGCTGGGACG 62.390 66.667 0.00 0.00 40.11 4.79
274 275 2.980233 AGCGCTGTTTGCTGGGAC 60.980 61.111 10.39 0.00 42.14 4.46
279 280 0.674581 TATCTGCAGCGCTGTTTGCT 60.675 50.000 35.80 20.05 45.31 3.91
280 281 0.168788 TTATCTGCAGCGCTGTTTGC 59.831 50.000 35.80 24.18 40.67 3.68
281 282 2.838386 ATTATCTGCAGCGCTGTTTG 57.162 45.000 35.80 25.04 0.00 2.93
282 283 4.129380 TGATATTATCTGCAGCGCTGTTT 58.871 39.130 35.80 20.80 0.00 2.83
283 284 3.732212 TGATATTATCTGCAGCGCTGTT 58.268 40.909 35.80 21.13 0.00 3.16
284 285 3.244009 ACTGATATTATCTGCAGCGCTGT 60.244 43.478 35.80 20.32 31.74 4.40
285 286 3.324117 ACTGATATTATCTGCAGCGCTG 58.676 45.455 32.83 32.83 31.74 5.18
286 287 3.674528 ACTGATATTATCTGCAGCGCT 57.325 42.857 9.47 2.64 31.74 5.92
287 288 3.305629 GCTACTGATATTATCTGCAGCGC 59.694 47.826 9.47 0.00 37.70 5.92
289 290 3.305629 GCGCTACTGATATTATCTGCAGC 59.694 47.826 18.77 18.77 41.49 5.25
290 291 3.862267 GGCGCTACTGATATTATCTGCAG 59.138 47.826 7.63 7.63 34.65 4.41
291 292 3.368427 GGGCGCTACTGATATTATCTGCA 60.368 47.826 7.64 0.00 0.00 4.41
292 293 3.118956 AGGGCGCTACTGATATTATCTGC 60.119 47.826 7.64 6.16 0.00 4.26
293 294 4.727507 AGGGCGCTACTGATATTATCTG 57.272 45.455 7.64 8.54 0.00 2.90
294 295 5.337652 GGAAAGGGCGCTACTGATATTATCT 60.338 44.000 7.64 0.00 0.00 1.98
295 296 4.870991 GGAAAGGGCGCTACTGATATTATC 59.129 45.833 7.64 0.00 0.00 1.75
296 297 4.323562 GGGAAAGGGCGCTACTGATATTAT 60.324 45.833 7.64 0.00 0.00 1.28
297 298 3.007614 GGGAAAGGGCGCTACTGATATTA 59.992 47.826 7.64 0.00 0.00 0.98
298 299 2.224548 GGGAAAGGGCGCTACTGATATT 60.225 50.000 7.64 0.00 0.00 1.28
299 300 1.348036 GGGAAAGGGCGCTACTGATAT 59.652 52.381 7.64 0.00 0.00 1.63
300 301 0.756903 GGGAAAGGGCGCTACTGATA 59.243 55.000 7.64 0.00 0.00 2.15
301 302 1.271840 TGGGAAAGGGCGCTACTGAT 61.272 55.000 7.64 0.00 0.00 2.90
302 303 1.485294 TTGGGAAAGGGCGCTACTGA 61.485 55.000 7.64 0.00 0.00 3.41
303 304 0.608035 TTTGGGAAAGGGCGCTACTG 60.608 55.000 7.64 0.00 0.00 2.74
304 305 0.322546 CTTTGGGAAAGGGCGCTACT 60.323 55.000 7.64 2.81 34.85 2.57
305 306 0.322187 TCTTTGGGAAAGGGCGCTAC 60.322 55.000 7.64 0.00 39.01 3.58
306 307 0.035439 CTCTTTGGGAAAGGGCGCTA 60.035 55.000 7.64 0.00 39.01 4.26
307 308 1.303643 CTCTTTGGGAAAGGGCGCT 60.304 57.895 7.64 0.00 39.01 5.92
308 309 3.278157 CTCTTTGGGAAAGGGCGC 58.722 61.111 0.00 0.00 39.01 6.53
311 312 0.035439 TAGCGCTCTTTGGGAAAGGG 60.035 55.000 16.34 0.00 42.03 3.95
312 313 1.087501 GTAGCGCTCTTTGGGAAAGG 58.912 55.000 16.34 0.00 39.01 3.11
313 314 1.734465 CTGTAGCGCTCTTTGGGAAAG 59.266 52.381 16.34 0.00 39.88 2.62
314 315 1.808411 CTGTAGCGCTCTTTGGGAAA 58.192 50.000 16.34 0.00 0.00 3.13
315 316 0.673644 GCTGTAGCGCTCTTTGGGAA 60.674 55.000 16.34 0.00 0.00 3.97
316 317 1.079127 GCTGTAGCGCTCTTTGGGA 60.079 57.895 16.34 0.00 0.00 4.37
317 318 3.490890 GCTGTAGCGCTCTTTGGG 58.509 61.111 16.34 0.35 0.00 4.12
334 335 6.760298 CCCATGCTACTGCTATACATGAATAG 59.240 42.308 0.00 0.00 40.39 1.73
335 336 6.440328 TCCCATGCTACTGCTATACATGAATA 59.560 38.462 0.00 0.00 40.39 1.75
336 337 5.249163 TCCCATGCTACTGCTATACATGAAT 59.751 40.000 0.00 0.00 40.39 2.57
337 338 4.592778 TCCCATGCTACTGCTATACATGAA 59.407 41.667 0.00 0.00 40.39 2.57
338 339 4.159557 TCCCATGCTACTGCTATACATGA 58.840 43.478 0.00 0.00 40.39 3.07
339 340 4.541973 TCCCATGCTACTGCTATACATG 57.458 45.455 0.00 0.00 40.48 3.21
340 341 5.567037 TTTCCCATGCTACTGCTATACAT 57.433 39.130 0.00 0.00 40.48 2.29
341 342 5.123227 GTTTTCCCATGCTACTGCTATACA 58.877 41.667 0.00 0.00 40.48 2.29
342 343 5.123227 TGTTTTCCCATGCTACTGCTATAC 58.877 41.667 0.00 0.00 40.48 1.47
343 344 5.366482 TGTTTTCCCATGCTACTGCTATA 57.634 39.130 0.00 0.00 40.48 1.31
344 345 4.202441 CTGTTTTCCCATGCTACTGCTAT 58.798 43.478 0.00 0.00 40.48 2.97
345 346 3.609853 CTGTTTTCCCATGCTACTGCTA 58.390 45.455 0.00 0.00 40.48 3.49
346 347 2.440409 CTGTTTTCCCATGCTACTGCT 58.560 47.619 0.00 0.00 40.48 4.24
347 348 1.474077 CCTGTTTTCCCATGCTACTGC 59.526 52.381 0.00 0.00 40.20 4.40
348 349 1.474077 GCCTGTTTTCCCATGCTACTG 59.526 52.381 0.00 0.00 0.00 2.74
349 350 1.839424 GCCTGTTTTCCCATGCTACT 58.161 50.000 0.00 0.00 0.00 2.57
350 351 0.451783 CGCCTGTTTTCCCATGCTAC 59.548 55.000 0.00 0.00 0.00 3.58
351 352 1.312371 GCGCCTGTTTTCCCATGCTA 61.312 55.000 0.00 0.00 0.00 3.49
352 353 2.639327 GCGCCTGTTTTCCCATGCT 61.639 57.895 0.00 0.00 0.00 3.79
353 354 1.312371 TAGCGCCTGTTTTCCCATGC 61.312 55.000 2.29 0.00 0.00 4.06
354 355 0.451783 GTAGCGCCTGTTTTCCCATG 59.548 55.000 2.29 0.00 0.00 3.66
355 356 0.328258 AGTAGCGCCTGTTTTCCCAT 59.672 50.000 2.29 0.00 0.00 4.00
356 357 0.605319 CAGTAGCGCCTGTTTTCCCA 60.605 55.000 2.29 0.00 0.00 4.37
357 358 1.923227 GCAGTAGCGCCTGTTTTCCC 61.923 60.000 14.02 0.00 34.84 3.97
358 359 1.502190 GCAGTAGCGCCTGTTTTCC 59.498 57.895 14.02 0.00 34.84 3.13
369 370 5.624491 GCTACAACTAACGTATAGCAGTAGC 59.376 44.000 24.75 24.75 40.51 3.58
370 371 5.844914 CGCTACAACTAACGTATAGCAGTAG 59.155 44.000 19.10 19.10 38.53 2.57
371 372 5.741425 CGCTACAACTAACGTATAGCAGTA 58.259 41.667 0.00 0.19 38.53 2.74
372 373 4.595116 CGCTACAACTAACGTATAGCAGT 58.405 43.478 0.00 0.00 38.53 4.40
373 374 3.421231 GCGCTACAACTAACGTATAGCAG 59.579 47.826 0.00 0.00 38.53 4.24
374 375 3.365832 GCGCTACAACTAACGTATAGCA 58.634 45.455 0.00 0.00 38.53 3.49
375 376 2.723143 GGCGCTACAACTAACGTATAGC 59.277 50.000 7.64 0.00 35.87 2.97
376 377 4.220533 AGGCGCTACAACTAACGTATAG 57.779 45.455 7.64 0.00 0.00 1.31
377 378 4.637483 AAGGCGCTACAACTAACGTATA 57.363 40.909 7.64 0.00 0.00 1.47
378 379 3.515330 AAGGCGCTACAACTAACGTAT 57.485 42.857 7.64 0.00 0.00 3.06
379 380 4.637483 ATAAGGCGCTACAACTAACGTA 57.363 40.909 7.64 0.00 0.00 3.57
380 381 3.515330 ATAAGGCGCTACAACTAACGT 57.485 42.857 7.64 0.00 0.00 3.99
381 382 5.039333 ACTAATAAGGCGCTACAACTAACG 58.961 41.667 7.64 0.00 0.00 3.18
382 383 6.143598 GCTACTAATAAGGCGCTACAACTAAC 59.856 42.308 7.64 0.00 0.00 2.34
383 384 6.211515 GCTACTAATAAGGCGCTACAACTAA 58.788 40.000 7.64 0.00 0.00 2.24
384 385 5.561532 CGCTACTAATAAGGCGCTACAACTA 60.562 44.000 7.64 0.00 41.08 2.24
385 386 4.618965 GCTACTAATAAGGCGCTACAACT 58.381 43.478 7.64 0.00 0.00 3.16
386 387 3.424529 CGCTACTAATAAGGCGCTACAAC 59.575 47.826 7.64 0.00 41.08 3.32
387 388 3.635331 CGCTACTAATAAGGCGCTACAA 58.365 45.455 7.64 0.00 41.08 2.41
388 389 3.278367 CGCTACTAATAAGGCGCTACA 57.722 47.619 7.64 0.00 41.08 2.74
394 395 1.289800 GCCGGCGCTACTAATAAGGC 61.290 60.000 12.58 5.09 36.32 4.35
395 396 0.032952 TGCCGGCGCTACTAATAAGG 59.967 55.000 23.90 0.00 35.36 2.69
396 397 1.137513 GTGCCGGCGCTACTAATAAG 58.862 55.000 32.27 0.00 35.36 1.73
397 398 0.249573 GGTGCCGGCGCTACTAATAA 60.250 55.000 36.63 5.72 35.36 1.40
398 399 1.364901 GGTGCCGGCGCTACTAATA 59.635 57.895 36.63 6.58 35.36 0.98
399 400 2.108362 GGTGCCGGCGCTACTAAT 59.892 61.111 36.63 0.00 35.36 1.73
400 401 4.151582 GGGTGCCGGCGCTACTAA 62.152 66.667 36.63 8.30 35.36 2.24
412 413 4.129737 TCTCAGTAGCGCGGGTGC 62.130 66.667 8.83 0.00 37.91 5.01
413 414 2.103143 CTCTCAGTAGCGCGGGTG 59.897 66.667 8.83 0.00 0.00 4.61
414 415 3.141488 CCTCTCAGTAGCGCGGGT 61.141 66.667 8.83 0.00 0.00 5.28
415 416 4.577246 GCCTCTCAGTAGCGCGGG 62.577 72.222 8.83 0.00 0.00 6.13
416 417 4.577246 GGCCTCTCAGTAGCGCGG 62.577 72.222 8.83 0.00 0.00 6.46
417 418 4.577246 GGGCCTCTCAGTAGCGCG 62.577 72.222 0.00 0.00 0.00 6.86
418 419 2.521958 TTTGGGCCTCTCAGTAGCGC 62.522 60.000 4.53 0.00 39.68 5.92
419 420 0.036388 TTTTGGGCCTCTCAGTAGCG 60.036 55.000 4.53 0.00 0.00 4.26
420 421 1.454201 GTTTTGGGCCTCTCAGTAGC 58.546 55.000 4.53 0.00 0.00 3.58
421 422 1.340114 GGGTTTTGGGCCTCTCAGTAG 60.340 57.143 4.53 0.00 0.00 2.57
422 423 0.696501 GGGTTTTGGGCCTCTCAGTA 59.303 55.000 4.53 0.00 0.00 2.74
423 424 1.068352 AGGGTTTTGGGCCTCTCAGT 61.068 55.000 4.53 0.00 0.00 3.41
424 425 0.322906 GAGGGTTTTGGGCCTCTCAG 60.323 60.000 4.53 0.00 0.00 3.35
425 426 1.767692 GAGGGTTTTGGGCCTCTCA 59.232 57.895 4.53 0.00 0.00 3.27
426 427 1.377333 CGAGGGTTTTGGGCCTCTC 60.377 63.158 4.53 1.67 0.00 3.20
427 428 2.757077 CGAGGGTTTTGGGCCTCT 59.243 61.111 4.53 0.00 0.00 3.69
428 429 3.062466 GCGAGGGTTTTGGGCCTC 61.062 66.667 4.53 0.00 0.00 4.70
429 430 3.580319 AGCGAGGGTTTTGGGCCT 61.580 61.111 4.53 0.00 0.00 5.19
430 431 3.373565 CAGCGAGGGTTTTGGGCC 61.374 66.667 0.00 0.00 0.00 5.80
431 432 4.056125 GCAGCGAGGGTTTTGGGC 62.056 66.667 0.00 0.00 0.00 5.36
432 433 2.282462 AGCAGCGAGGGTTTTGGG 60.282 61.111 0.00 0.00 0.00 4.12
433 434 2.956987 CAGCAGCGAGGGTTTTGG 59.043 61.111 0.00 0.00 0.00 3.28
434 435 2.256461 GCAGCAGCGAGGGTTTTG 59.744 61.111 0.00 0.00 0.00 2.44
444 445 0.172127 GGAAAAAGCCTAGCAGCAGC 59.828 55.000 0.00 0.00 42.56 5.25
445 446 0.813821 GGGAAAAAGCCTAGCAGCAG 59.186 55.000 0.00 0.00 34.23 4.24
446 447 0.405585 AGGGAAAAAGCCTAGCAGCA 59.594 50.000 0.00 0.00 34.23 4.41
447 448 2.293170 CTAGGGAAAAAGCCTAGCAGC 58.707 52.381 0.00 0.00 0.00 5.25
448 449 3.636153 ACTAGGGAAAAAGCCTAGCAG 57.364 47.619 0.00 0.00 37.59 4.24
449 450 4.081087 CACTACTAGGGAAAAAGCCTAGCA 60.081 45.833 0.00 0.00 37.59 3.49
450 451 4.081031 ACACTACTAGGGAAAAAGCCTAGC 60.081 45.833 0.00 0.00 37.59 3.42
451 452 5.678955 ACACTACTAGGGAAAAAGCCTAG 57.321 43.478 0.00 0.00 39.32 3.02
452 453 7.744678 ATAACACTACTAGGGAAAAAGCCTA 57.255 36.000 0.00 0.00 0.00 3.93
453 454 4.995624 AACACTACTAGGGAAAAAGCCT 57.004 40.909 0.00 0.00 0.00 4.58
454 455 8.797350 TTTATAACACTACTAGGGAAAAAGCC 57.203 34.615 0.00 0.00 0.00 4.35
455 456 9.445878 ACTTTATAACACTACTAGGGAAAAAGC 57.554 33.333 0.00 0.00 0.00 3.51
469 470 8.135529 GCCAGAACTGAAAAACTTTATAACACT 58.864 33.333 3.19 0.00 0.00 3.55
470 471 7.918562 TGCCAGAACTGAAAAACTTTATAACAC 59.081 33.333 3.19 0.00 0.00 3.32
471 472 8.001881 TGCCAGAACTGAAAAACTTTATAACA 57.998 30.769 3.19 0.00 0.00 2.41
472 473 8.865590 TTGCCAGAACTGAAAAACTTTATAAC 57.134 30.769 3.19 0.00 0.00 1.89
473 474 9.528018 CTTTGCCAGAACTGAAAAACTTTATAA 57.472 29.630 3.19 0.00 0.00 0.98
474 475 8.691797 ACTTTGCCAGAACTGAAAAACTTTATA 58.308 29.630 3.19 0.00 0.00 0.98
475 476 7.555965 ACTTTGCCAGAACTGAAAAACTTTAT 58.444 30.769 3.19 0.00 0.00 1.40
476 477 6.930731 ACTTTGCCAGAACTGAAAAACTTTA 58.069 32.000 3.19 0.00 0.00 1.85
477 478 5.793817 ACTTTGCCAGAACTGAAAAACTTT 58.206 33.333 3.19 0.00 0.00 2.66
478 479 5.405935 ACTTTGCCAGAACTGAAAAACTT 57.594 34.783 3.19 0.00 0.00 2.66
479 480 5.185828 AGAACTTTGCCAGAACTGAAAAACT 59.814 36.000 3.19 2.53 0.00 2.66
480 481 5.410924 AGAACTTTGCCAGAACTGAAAAAC 58.589 37.500 3.19 0.78 0.00 2.43
481 482 5.659440 AGAACTTTGCCAGAACTGAAAAA 57.341 34.783 3.19 3.30 0.00 1.94
482 483 5.659440 AAGAACTTTGCCAGAACTGAAAA 57.341 34.783 3.19 3.60 0.00 2.29
483 484 5.659440 AAAGAACTTTGCCAGAACTGAAA 57.341 34.783 3.19 0.00 0.00 2.69
484 485 6.767524 TTAAAGAACTTTGCCAGAACTGAA 57.232 33.333 9.66 0.00 34.23 3.02
485 486 6.959639 ATTAAAGAACTTTGCCAGAACTGA 57.040 33.333 9.66 0.00 34.23 3.41
486 487 8.424274 AAAATTAAAGAACTTTGCCAGAACTG 57.576 30.769 9.66 0.00 34.23 3.16
487 488 8.478066 AGAAAATTAAAGAACTTTGCCAGAACT 58.522 29.630 9.66 0.52 34.23 3.01
488 489 8.648557 AGAAAATTAAAGAACTTTGCCAGAAC 57.351 30.769 9.66 0.00 34.23 3.01
509 510 1.960689 GGGCCTGCACTTTGTTAGAAA 59.039 47.619 0.84 0.00 0.00 2.52
512 513 0.598065 GTGGGCCTGCACTTTGTTAG 59.402 55.000 4.53 0.00 0.00 2.34
532 534 4.855340 AGAGTTGAAGAACTTTCCCAACA 58.145 39.130 18.88 1.48 42.80 3.33
536 538 8.166422 TGAATAAAGAGTTGAAGAACTTTCCC 57.834 34.615 0.00 0.00 42.80 3.97
537 539 8.841300 ACTGAATAAAGAGTTGAAGAACTTTCC 58.159 33.333 0.00 0.00 42.80 3.13
541 543 9.178758 ACAAACTGAATAAAGAGTTGAAGAACT 57.821 29.630 0.00 0.00 45.59 3.01
698 700 9.469097 AAGATCTTTAGAGCAAGAGTAGTCTTA 57.531 33.333 12.50 0.00 41.40 2.10
705 707 5.047660 ACGTCAAGATCTTTAGAGCAAGAGT 60.048 40.000 4.86 0.00 36.22 3.24
706 708 5.406649 ACGTCAAGATCTTTAGAGCAAGAG 58.593 41.667 4.86 0.00 36.22 2.85
712 714 8.744008 TTGAACTAACGTCAAGATCTTTAGAG 57.256 34.615 15.05 6.74 0.00 2.43
795 813 8.722394 CCTCTCCTCAAACTTCATTACTTTTAC 58.278 37.037 0.00 0.00 0.00 2.01
823 841 4.640201 ACATGCATGCCTACGTTATCTTTT 59.360 37.500 26.53 0.00 0.00 2.27
832 850 2.030823 CACTAACACATGCATGCCTACG 59.969 50.000 26.53 14.33 0.00 3.51
836 854 0.527113 TGCACTAACACATGCATGCC 59.473 50.000 26.53 5.59 46.63 4.40
841 859 0.813184 ATGCCTGCACTAACACATGC 59.187 50.000 0.00 0.00 42.40 4.06
842 860 2.554806 CATGCCTGCACTAACACATG 57.445 50.000 0.00 0.00 0.00 3.21
854 872 0.315886 ACACAACACATGCATGCCTG 59.684 50.000 26.53 19.88 0.00 4.85
855 873 0.315886 CACACAACACATGCATGCCT 59.684 50.000 26.53 8.77 0.00 4.75
885 903 1.632409 TGCATGGCCTCTCTTTCTCTT 59.368 47.619 3.32 0.00 0.00 2.85
919 937 4.913335 ATAGCGTTTCCTAACTCATCGA 57.087 40.909 0.00 0.00 31.89 3.59
944 962 2.283676 TGGGACTCTCGGACACCC 60.284 66.667 0.00 0.00 40.79 4.61
1024 1043 1.623542 GGAGGGTAGGTTGCCGATGT 61.624 60.000 0.00 0.00 0.00 3.06
1036 1055 1.624813 CGTTTGTGGTTAGGGAGGGTA 59.375 52.381 0.00 0.00 0.00 3.69
1037 1056 0.399075 CGTTTGTGGTTAGGGAGGGT 59.601 55.000 0.00 0.00 0.00 4.34
1173 1192 2.415608 GGACTCGTCCTCATCGGCA 61.416 63.158 8.82 0.00 46.16 5.69
1341 1360 2.456119 CGTCTGGATCACCTTGCGC 61.456 63.158 0.00 0.00 37.04 6.09
1380 1399 3.450115 GGGACCCACTCGACGGAG 61.450 72.222 5.33 0.00 46.13 4.63
1488 1507 1.375523 GTGTGGGACGTCATGGGTC 60.376 63.158 18.91 8.72 0.00 4.46
1571 1590 0.321122 GGTGATGGGATCCGAGCATC 60.321 60.000 18.07 13.93 0.00 3.91
1578 1597 2.203209 GCGGTGGTGATGGGATCC 60.203 66.667 1.92 1.92 0.00 3.36
1773 1792 2.821688 CGTACGGACCTCGAGCCTC 61.822 68.421 6.99 3.24 42.43 4.70
1872 1896 2.003672 GCGTCCGCAAACACGATAT 58.996 52.632 6.82 0.00 41.49 1.63
1873 1897 3.465753 GCGTCCGCAAACACGATA 58.534 55.556 6.82 0.00 41.49 2.92
1974 1998 1.409064 TCATCTCCCTCACGCACATAC 59.591 52.381 0.00 0.00 0.00 2.39
2058 2082 4.003788 ACGTCCTTGAGCCCCGTG 62.004 66.667 0.00 0.00 0.00 4.94
2136 2160 1.664333 CATGGCGTTGTTGTTGGGC 60.664 57.895 0.00 0.00 0.00 5.36
2171 2195 2.228343 CTCGTACCTTTTGAGGACTCGT 59.772 50.000 0.00 0.00 0.00 4.18
2201 2225 0.976073 AGGTCCCGTGTATGGTGGAG 60.976 60.000 0.00 0.00 0.00 3.86
2258 2282 4.474651 AGATGATACAATGGACCCACAGAA 59.525 41.667 0.00 0.00 0.00 3.02
2260 2284 4.428294 AGATGATACAATGGACCCACAG 57.572 45.455 0.00 0.00 0.00 3.66
2325 2350 7.059945 GCATCTATTTGTTTGAACGAAACTCAG 59.940 37.037 0.97 0.00 43.90 3.35
2462 2487 6.972901 GGCTAGCCATACTGAAACAATAAAAC 59.027 38.462 29.33 0.00 35.81 2.43
2464 2489 6.184068 TGGCTAGCCATACTGAAACAATAAA 58.816 36.000 32.88 3.09 41.89 1.40
2528 2553 3.244345 ACACTAACACACGATGAAACACG 59.756 43.478 0.00 0.00 0.00 4.49
2539 2564 8.588789 GGAACAATTTAAAACACACTAACACAC 58.411 33.333 0.00 0.00 0.00 3.82
2612 2637 1.257055 AACACGATGCCCCCAAATGG 61.257 55.000 0.00 0.00 0.00 3.16
2640 2665 8.599774 CAACAAGTTTTAAAATTCACGATGGTT 58.400 29.630 3.52 0.00 0.00 3.67
2700 2747 7.186128 TGCATATTTGTGTTTATGATGACGAC 58.814 34.615 0.00 0.00 0.00 4.34
2789 2836 4.858850 TCACCATCTCATGCCAGTATTTT 58.141 39.130 0.00 0.00 0.00 1.82
2797 2844 1.688772 ATGCTTCACCATCTCATGCC 58.311 50.000 0.00 0.00 0.00 4.40
2803 2850 3.920231 TCTAGCAATGCTTCACCATCT 57.080 42.857 14.85 0.00 40.44 2.90
2811 2858 5.047021 TCTCACTACTGTTCTAGCAATGCTT 60.047 40.000 14.85 0.00 40.44 3.91
2817 2864 5.561679 TCTTCTCTCACTACTGTTCTAGCA 58.438 41.667 0.00 0.00 0.00 3.49
2865 2914 6.349973 TCTTGAAGATTCGCATACATTCAC 57.650 37.500 0.00 0.00 0.00 3.18
2872 2921 7.916977 CCATTGATTTTCTTGAAGATTCGCATA 59.083 33.333 0.00 0.00 0.00 3.14
2876 2925 5.517770 GGCCATTGATTTTCTTGAAGATTCG 59.482 40.000 0.00 0.00 0.00 3.34
2913 2962 3.118261 GGAGAAAGGCATGTCTACCATCA 60.118 47.826 0.00 0.00 0.00 3.07
2917 2966 3.350219 TTGGAGAAAGGCATGTCTACC 57.650 47.619 0.00 3.05 0.00 3.18
2918 2967 4.156739 CCTTTTGGAGAAAGGCATGTCTAC 59.843 45.833 0.00 0.00 44.07 2.59
2919 2968 4.335416 CCTTTTGGAGAAAGGCATGTCTA 58.665 43.478 0.00 0.00 44.07 2.59
2920 2969 3.160269 CCTTTTGGAGAAAGGCATGTCT 58.840 45.455 0.00 0.00 44.07 3.41
2921 2970 3.582714 CCTTTTGGAGAAAGGCATGTC 57.417 47.619 4.76 0.00 44.07 3.06
2933 2982 7.201702 TGTCCATATATGTGTACCTTTTGGA 57.798 36.000 11.73 0.00 44.07 3.53
2989 3038 0.751643 CTCTTGGGGGCCATAAACCG 60.752 60.000 4.39 0.00 31.53 4.44
3005 3054 6.712547 GGAATCGGATTTTATCACAATCCTCT 59.287 38.462 4.47 0.00 45.39 3.69
3024 3073 5.354767 TGTTCTGATCTCATTGAGGAATCG 58.645 41.667 13.59 7.15 0.00 3.34
3033 3082 9.902684 ACTTGATCTTATTGTTCTGATCTCATT 57.097 29.630 0.00 0.00 37.00 2.57
3151 3200 7.662669 TCACTAACCACTTTATTGAACTTACCC 59.337 37.037 0.00 0.00 28.96 3.69
3182 3231 7.267128 CCATTAAGGTTAACATCATGCAACAT 58.733 34.615 8.10 0.00 0.00 2.71
3209 3258 2.742774 GTTTGTCCATGTGAAAGCACC 58.257 47.619 0.00 0.00 44.51 5.01
3274 3323 2.721971 GATCATGCCACGCCGGAGAT 62.722 60.000 13.83 0.00 36.56 2.75
3282 3331 0.877649 CGGGAAGAGATCATGCCACG 60.878 60.000 0.00 0.00 0.00 4.94
3382 3431 4.383774 TTCAAAACGTAATCTGCGACAG 57.616 40.909 0.00 0.00 0.00 3.51
3472 3521 2.125961 ATAGTCCGGTCAGCGGGTC 61.126 63.158 16.90 9.33 36.58 4.46
3482 3531 1.067060 TGATCTTGCGACATAGTCCGG 59.933 52.381 0.00 0.00 0.00 5.14
3484 3533 3.444703 ACTGATCTTGCGACATAGTCC 57.555 47.619 0.00 0.00 0.00 3.85
3621 3718 6.405176 CCTTTAATTCTCTTGAAGCCATGTCC 60.405 42.308 0.00 0.00 35.44 4.02
3762 3861 2.813754 AGCATGCAAGCTTTTTCGTAGA 59.186 40.909 21.98 0.00 43.70 2.59
3766 3865 1.916000 GCTAGCATGCAAGCTTTTTCG 59.084 47.619 22.94 7.06 43.70 3.46
3808 3907 6.098679 TCAAATGTGAGTGTCAACTTTTTGG 58.901 36.000 0.00 0.00 36.52 3.28
3925 4027 4.896482 GGGTGACAGTCTGTATAAGGATCT 59.104 45.833 5.21 0.00 0.00 2.75
4009 4118 2.749621 CTCCAAAGCTTGTGGACCATAC 59.250 50.000 19.97 0.00 40.33 2.39
4173 4282 5.357878 ACGATAATGAAATGGTCAACATGCT 59.642 36.000 0.00 0.00 40.50 3.79
4272 4381 4.472286 GTCACTCAGACTTCGAAGAAGAG 58.528 47.826 31.08 29.05 44.09 2.85
4525 5064 1.804151 GTGTGTGTGTGTGTTCTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
4530 5069 1.533299 TGTGTGTGTGTGTGTGTGTTC 59.467 47.619 0.00 0.00 0.00 3.18
4533 5072 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4535 5074 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4871 5489 2.631160 TGACTTGTTGGATTCGGTGT 57.369 45.000 0.00 0.00 0.00 4.16
4872 5490 3.980646 TTTGACTTGTTGGATTCGGTG 57.019 42.857 0.00 0.00 0.00 4.94
4873 5491 3.888930 ACATTTGACTTGTTGGATTCGGT 59.111 39.130 0.00 0.00 0.00 4.69
4874 5492 4.503741 ACATTTGACTTGTTGGATTCGG 57.496 40.909 0.00 0.00 0.00 4.30
4875 5493 6.434596 TGTTACATTTGACTTGTTGGATTCG 58.565 36.000 0.00 0.00 0.00 3.34
4876 5494 8.539674 GTTTGTTACATTTGACTTGTTGGATTC 58.460 33.333 0.00 0.00 0.00 2.52
4877 5495 8.037758 TGTTTGTTACATTTGACTTGTTGGATT 58.962 29.630 0.00 0.00 0.00 3.01
4894 5730 4.148563 TGTGTGTGTGTGTGTTTGTTAC 57.851 40.909 0.00 0.00 0.00 2.50
4913 5749 2.519377 TGACTTGTCGGATTCGTTGT 57.481 45.000 0.00 0.00 37.69 3.32
4914 5750 3.870723 TTTGACTTGTCGGATTCGTTG 57.129 42.857 0.00 0.00 37.69 4.10
4915 5751 7.332430 TGTTATATTTGACTTGTCGGATTCGTT 59.668 33.333 0.00 0.00 37.69 3.85
4916 5752 6.814644 TGTTATATTTGACTTGTCGGATTCGT 59.185 34.615 0.00 0.00 37.69 3.85
4917 5753 7.229228 TGTTATATTTGACTTGTCGGATTCG 57.771 36.000 0.00 0.00 37.82 3.34
4918 5754 9.274065 GTTTGTTATATTTGACTTGTCGGATTC 57.726 33.333 0.00 0.00 0.00 2.52
4919 5755 8.788806 TGTTTGTTATATTTGACTTGTCGGATT 58.211 29.630 0.00 0.00 0.00 3.01
4920 5756 8.234546 GTGTTTGTTATATTTGACTTGTCGGAT 58.765 33.333 0.00 0.00 0.00 4.18
4921 5757 7.226918 TGTGTTTGTTATATTTGACTTGTCGGA 59.773 33.333 0.00 0.00 0.00 4.55
4922 5758 7.322699 GTGTGTTTGTTATATTTGACTTGTCGG 59.677 37.037 0.00 0.00 0.00 4.79
4923 5759 7.853437 TGTGTGTTTGTTATATTTGACTTGTCG 59.147 33.333 0.00 0.00 0.00 4.35
4924 5760 8.953990 GTGTGTGTTTGTTATATTTGACTTGTC 58.046 33.333 0.00 0.00 0.00 3.18
4925 5761 8.462811 TGTGTGTGTTTGTTATATTTGACTTGT 58.537 29.630 0.00 0.00 0.00 3.16
4926 5762 8.742188 GTGTGTGTGTTTGTTATATTTGACTTG 58.258 33.333 0.00 0.00 0.00 3.16
4927 5763 8.462811 TGTGTGTGTGTTTGTTATATTTGACTT 58.537 29.630 0.00 0.00 0.00 3.01
4928 5764 7.913297 GTGTGTGTGTGTTTGTTATATTTGACT 59.087 33.333 0.00 0.00 0.00 3.41
4929 5765 7.698550 TGTGTGTGTGTGTTTGTTATATTTGAC 59.301 33.333 0.00 0.00 0.00 3.18
4930 5766 7.698550 GTGTGTGTGTGTGTTTGTTATATTTGA 59.301 33.333 0.00 0.00 0.00 2.69
4931 5767 7.486232 TGTGTGTGTGTGTGTTTGTTATATTTG 59.514 33.333 0.00 0.00 0.00 2.32
4932 5768 7.486551 GTGTGTGTGTGTGTGTTTGTTATATTT 59.513 33.333 0.00 0.00 0.00 1.40
4933 5769 6.970043 GTGTGTGTGTGTGTGTTTGTTATATT 59.030 34.615 0.00 0.00 0.00 1.28
4934 5770 6.094186 TGTGTGTGTGTGTGTGTTTGTTATAT 59.906 34.615 0.00 0.00 0.00 0.86
4935 5771 5.411669 TGTGTGTGTGTGTGTGTTTGTTATA 59.588 36.000 0.00 0.00 0.00 0.98
4936 5772 4.216472 TGTGTGTGTGTGTGTGTTTGTTAT 59.784 37.500 0.00 0.00 0.00 1.89
4937 5773 3.564225 TGTGTGTGTGTGTGTGTTTGTTA 59.436 39.130 0.00 0.00 0.00 2.41
4938 5774 2.359214 TGTGTGTGTGTGTGTGTTTGTT 59.641 40.909 0.00 0.00 0.00 2.83
4939 5775 1.950216 TGTGTGTGTGTGTGTGTTTGT 59.050 42.857 0.00 0.00 0.00 2.83
4940 5776 2.695613 TGTGTGTGTGTGTGTGTTTG 57.304 45.000 0.00 0.00 0.00 2.93
4941 5777 3.254411 TCATTGTGTGTGTGTGTGTGTTT 59.746 39.130 0.00 0.00 0.00 2.83
4942 5778 2.816672 TCATTGTGTGTGTGTGTGTGTT 59.183 40.909 0.00 0.00 0.00 3.32
4943 5779 2.431454 TCATTGTGTGTGTGTGTGTGT 58.569 42.857 0.00 0.00 0.00 3.72
4944 5780 3.484334 TTCATTGTGTGTGTGTGTGTG 57.516 42.857 0.00 0.00 0.00 3.82
4945 5781 3.066621 GGATTCATTGTGTGTGTGTGTGT 59.933 43.478 0.00 0.00 0.00 3.72
4946 5782 3.066481 TGGATTCATTGTGTGTGTGTGTG 59.934 43.478 0.00 0.00 0.00 3.82
4947 5783 3.286353 TGGATTCATTGTGTGTGTGTGT 58.714 40.909 0.00 0.00 0.00 3.72
4948 5784 3.986442 TGGATTCATTGTGTGTGTGTG 57.014 42.857 0.00 0.00 0.00 3.82
4949 5785 3.698539 TGTTGGATTCATTGTGTGTGTGT 59.301 39.130 0.00 0.00 0.00 3.72
4950 5786 4.304537 TGTTGGATTCATTGTGTGTGTG 57.695 40.909 0.00 0.00 0.00 3.82
4951 5787 4.402155 ACTTGTTGGATTCATTGTGTGTGT 59.598 37.500 0.00 0.00 0.00 3.72
4952 5788 4.935702 ACTTGTTGGATTCATTGTGTGTG 58.064 39.130 0.00 0.00 0.00 3.82
4953 5789 6.707440 TTACTTGTTGGATTCATTGTGTGT 57.293 33.333 0.00 0.00 0.00 3.72
4954 5790 8.592105 ATTTTACTTGTTGGATTCATTGTGTG 57.408 30.769 0.00 0.00 0.00 3.82
4982 5818 7.093945 GGTTGTATCATTGTATGACCCTTTGTT 60.094 37.037 0.00 0.00 43.01 2.83
4993 5829 5.239306 CCGCATCTTGGTTGTATCATTGTAT 59.761 40.000 0.00 0.00 0.00 2.29
4994 5830 4.574421 CCGCATCTTGGTTGTATCATTGTA 59.426 41.667 0.00 0.00 0.00 2.41
4995 5831 3.378112 CCGCATCTTGGTTGTATCATTGT 59.622 43.478 0.00 0.00 0.00 2.71
4996 5832 3.378112 ACCGCATCTTGGTTGTATCATTG 59.622 43.478 0.00 0.00 35.82 2.82
4997 5833 3.620488 ACCGCATCTTGGTTGTATCATT 58.380 40.909 0.00 0.00 35.82 2.57
4998 5834 3.281727 ACCGCATCTTGGTTGTATCAT 57.718 42.857 0.00 0.00 35.82 2.45
4999 5835 2.779755 ACCGCATCTTGGTTGTATCA 57.220 45.000 0.00 0.00 35.82 2.15
5059 5895 9.586435 AGCATTCTTAATAAGGCATTTGTTAAC 57.414 29.630 11.97 0.00 38.57 2.01
5120 5956 2.081462 GGTTATCCCGGACAGTTGTTG 58.919 52.381 0.73 0.00 0.00 3.33
5194 6030 7.707624 TCTTTTCATCCTGATACTGCAAATT 57.292 32.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.