Multiple sequence alignment - TraesCS3A01G066700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G066700 chr3A 100.000 2397 0 0 1 2397 40172113 40174509 0.000000e+00 4427
1 TraesCS3A01G066700 chr3A 85.608 806 88 17 1001 1787 42320278 42319482 0.000000e+00 821
2 TraesCS3A01G066700 chr3A 79.110 809 106 35 995 1784 40185666 40186430 1.280000e-137 499
3 TraesCS3A01G066700 chr3D 92.382 827 60 3 995 1819 29607996 29608821 0.000000e+00 1175
4 TraesCS3A01G066700 chr3D 94.003 667 28 8 338 1000 29511822 29512480 0.000000e+00 1000
5 TraesCS3A01G066700 chr3D 93.853 667 29 8 338 1000 29477707 29478365 0.000000e+00 994
6 TraesCS3A01G066700 chr3D 93.853 667 29 8 338 1000 29551241 29551899 0.000000e+00 994
7 TraesCS3A01G066700 chr3D 85.181 803 88 16 1001 1787 30374705 30373918 0.000000e+00 795
8 TraesCS3A01G066700 chr3D 82.967 728 90 19 1076 1787 29410466 29411175 5.630000e-176 627
9 TraesCS3A01G066700 chr3D 94.521 292 13 2 711 1000 29605147 29605437 4.700000e-122 448
10 TraesCS3A01G066700 chr3D 88.889 108 12 0 1000 1107 29620307 29620414 1.490000e-27 134
11 TraesCS3A01G066700 chr3D 86.486 111 12 1 1000 1107 29623869 29623979 4.190000e-23 119
12 TraesCS3A01G066700 chr3B 91.677 781 38 11 226 1000 50248425 50249184 0.000000e+00 1057
13 TraesCS3A01G066700 chr3B 84.793 651 69 12 1001 1633 53199618 53198980 5.630000e-176 627
14 TraesCS3A01G066700 chr3B 80.972 741 96 28 995 1721 50413842 50414551 1.620000e-151 545
15 TraesCS3A01G066700 chr3B 89.116 441 33 2 995 1435 50398052 50398477 3.510000e-148 534
16 TraesCS3A01G066700 chr3B 91.467 375 31 1 1433 1807 50407022 50407395 4.570000e-142 514
17 TraesCS3A01G066700 chr3B 90.566 106 9 1 1683 1787 53198983 53198878 3.210000e-29 139
18 TraesCS3A01G066700 chrUn 93.103 667 30 9 338 1000 343496646 343497300 0.000000e+00 963
19 TraesCS3A01G066700 chrUn 93.583 374 15 6 338 709 397538129 397537763 1.250000e-152 549
20 TraesCS3A01G066700 chrUn 93.583 374 15 6 338 709 416204655 416204289 1.250000e-152 549


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G066700 chr3A 40172113 40174509 2396 False 4427.0 4427 100.0000 1 2397 1 chr3A.!!$F1 2396
1 TraesCS3A01G066700 chr3A 42319482 42320278 796 True 821.0 821 85.6080 1001 1787 1 chr3A.!!$R1 786
2 TraesCS3A01G066700 chr3A 40185666 40186430 764 False 499.0 499 79.1100 995 1784 1 chr3A.!!$F2 789
3 TraesCS3A01G066700 chr3D 29511822 29512480 658 False 1000.0 1000 94.0030 338 1000 1 chr3D.!!$F3 662
4 TraesCS3A01G066700 chr3D 29477707 29478365 658 False 994.0 994 93.8530 338 1000 1 chr3D.!!$F2 662
5 TraesCS3A01G066700 chr3D 29551241 29551899 658 False 994.0 994 93.8530 338 1000 1 chr3D.!!$F4 662
6 TraesCS3A01G066700 chr3D 29605147 29608821 3674 False 811.5 1175 93.4515 711 1819 2 chr3D.!!$F5 1108
7 TraesCS3A01G066700 chr3D 30373918 30374705 787 True 795.0 795 85.1810 1001 1787 1 chr3D.!!$R1 786
8 TraesCS3A01G066700 chr3D 29410466 29411175 709 False 627.0 627 82.9670 1076 1787 1 chr3D.!!$F1 711
9 TraesCS3A01G066700 chr3B 50248425 50249184 759 False 1057.0 1057 91.6770 226 1000 1 chr3B.!!$F1 774
10 TraesCS3A01G066700 chr3B 50413842 50414551 709 False 545.0 545 80.9720 995 1721 1 chr3B.!!$F4 726
11 TraesCS3A01G066700 chr3B 53198878 53199618 740 True 383.0 627 87.6795 1001 1787 2 chr3B.!!$R1 786
12 TraesCS3A01G066700 chrUn 343496646 343497300 654 False 963.0 963 93.1030 338 1000 1 chrUn.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.042131 ACTTGGGATCACCGGGAGTA 59.958 55.0 6.32 0.0 44.64 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 4509 0.034896 ACAGACGAAATTGGCCGACT 59.965 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.736414 ACTATATTTATGAGTTCTAGCGTAGGA 57.264 33.333 0.00 0.00 0.00 2.94
55 56 8.819643 ATTTATGAGTTCTAGCGTAGGATTTC 57.180 34.615 0.00 0.00 0.00 2.17
56 57 7.584122 TTATGAGTTCTAGCGTAGGATTTCT 57.416 36.000 0.00 0.00 0.00 2.52
57 58 8.687292 TTATGAGTTCTAGCGTAGGATTTCTA 57.313 34.615 0.00 0.00 0.00 2.10
58 59 7.584122 ATGAGTTCTAGCGTAGGATTTCTAA 57.416 36.000 0.00 0.00 0.00 2.10
59 60 7.400599 TGAGTTCTAGCGTAGGATTTCTAAA 57.599 36.000 0.00 0.00 0.00 1.85
60 61 7.256286 TGAGTTCTAGCGTAGGATTTCTAAAC 58.744 38.462 0.00 0.00 0.00 2.01
61 62 7.122353 TGAGTTCTAGCGTAGGATTTCTAAACT 59.878 37.037 0.00 0.00 0.00 2.66
62 63 7.838884 AGTTCTAGCGTAGGATTTCTAAACTT 58.161 34.615 0.00 0.00 0.00 2.66
63 64 7.760340 AGTTCTAGCGTAGGATTTCTAAACTTG 59.240 37.037 0.00 0.00 0.00 3.16
64 65 6.570692 TCTAGCGTAGGATTTCTAAACTTGG 58.429 40.000 0.00 0.00 0.00 3.61
65 66 4.514401 AGCGTAGGATTTCTAAACTTGGG 58.486 43.478 0.00 0.00 0.00 4.12
66 67 4.224370 AGCGTAGGATTTCTAAACTTGGGA 59.776 41.667 0.00 0.00 0.00 4.37
67 68 5.104485 AGCGTAGGATTTCTAAACTTGGGAT 60.104 40.000 0.00 0.00 0.00 3.85
68 69 5.236695 GCGTAGGATTTCTAAACTTGGGATC 59.763 44.000 0.00 0.00 0.00 3.36
69 70 6.346096 CGTAGGATTTCTAAACTTGGGATCA 58.654 40.000 0.00 0.00 0.00 2.92
70 71 6.258068 CGTAGGATTTCTAAACTTGGGATCAC 59.742 42.308 0.00 0.00 0.00 3.06
71 72 5.510430 AGGATTTCTAAACTTGGGATCACC 58.490 41.667 0.00 0.00 40.81 4.02
72 73 4.335594 GGATTTCTAAACTTGGGATCACCG 59.664 45.833 0.00 0.00 44.64 4.94
73 74 3.343941 TTCTAAACTTGGGATCACCGG 57.656 47.619 0.00 0.00 44.64 5.28
74 75 1.557832 TCTAAACTTGGGATCACCGGG 59.442 52.381 6.32 0.00 44.64 5.73
75 76 1.557832 CTAAACTTGGGATCACCGGGA 59.442 52.381 6.32 0.00 44.64 5.14
76 77 0.328258 AAACTTGGGATCACCGGGAG 59.672 55.000 6.32 0.00 44.64 4.30
77 78 0.840722 AACTTGGGATCACCGGGAGT 60.841 55.000 6.32 0.00 44.64 3.85
78 79 0.042131 ACTTGGGATCACCGGGAGTA 59.958 55.000 6.32 0.00 44.64 2.59
79 80 0.464452 CTTGGGATCACCGGGAGTAC 59.536 60.000 6.32 0.00 44.64 2.73
80 81 0.042131 TTGGGATCACCGGGAGTACT 59.958 55.000 6.32 0.00 44.64 2.73
81 82 0.396695 TGGGATCACCGGGAGTACTC 60.397 60.000 14.87 14.87 44.64 2.59
82 83 3.773149 TGGGATCACCGGGAGTACTCC 62.773 61.905 30.72 30.72 44.64 3.85
94 95 2.689646 GAGTACTCCAAGCTGGACAAC 58.310 52.381 12.13 0.00 42.67 3.32
95 96 1.348036 AGTACTCCAAGCTGGACAACC 59.652 52.381 0.00 0.00 42.67 3.77
96 97 1.071699 GTACTCCAAGCTGGACAACCA 59.928 52.381 0.00 0.00 42.67 3.67
97 98 0.773644 ACTCCAAGCTGGACAACCAT 59.226 50.000 0.00 0.00 42.67 3.55
98 99 1.985159 ACTCCAAGCTGGACAACCATA 59.015 47.619 0.00 0.00 42.67 2.74
99 100 2.578021 ACTCCAAGCTGGACAACCATAT 59.422 45.455 0.00 0.00 42.67 1.78
100 101 3.780294 ACTCCAAGCTGGACAACCATATA 59.220 43.478 0.00 0.00 42.67 0.86
101 102 4.141620 ACTCCAAGCTGGACAACCATATAG 60.142 45.833 0.00 0.00 42.67 1.31
102 103 3.136443 TCCAAGCTGGACAACCATATAGG 59.864 47.826 0.00 0.00 42.67 2.57
116 117 5.132897 CCATATAGGTTCTCACTCTGCTC 57.867 47.826 0.00 0.00 0.00 4.26
117 118 4.586421 CCATATAGGTTCTCACTCTGCTCA 59.414 45.833 0.00 0.00 0.00 4.26
118 119 5.508825 CCATATAGGTTCTCACTCTGCTCAC 60.509 48.000 0.00 0.00 0.00 3.51
119 120 2.008242 AGGTTCTCACTCTGCTCACT 57.992 50.000 0.00 0.00 0.00 3.41
120 121 1.892474 AGGTTCTCACTCTGCTCACTC 59.108 52.381 0.00 0.00 0.00 3.51
121 122 1.615883 GGTTCTCACTCTGCTCACTCA 59.384 52.381 0.00 0.00 0.00 3.41
122 123 2.036475 GGTTCTCACTCTGCTCACTCAA 59.964 50.000 0.00 0.00 0.00 3.02
123 124 3.316283 GTTCTCACTCTGCTCACTCAAG 58.684 50.000 0.00 0.00 0.00 3.02
124 125 2.591923 TCTCACTCTGCTCACTCAAGT 58.408 47.619 0.00 0.00 0.00 3.16
125 126 2.961741 TCTCACTCTGCTCACTCAAGTT 59.038 45.455 0.00 0.00 0.00 2.66
126 127 3.386078 TCTCACTCTGCTCACTCAAGTTT 59.614 43.478 0.00 0.00 0.00 2.66
127 128 4.584743 TCTCACTCTGCTCACTCAAGTTTA 59.415 41.667 0.00 0.00 0.00 2.01
128 129 4.621991 TCACTCTGCTCACTCAAGTTTAC 58.378 43.478 0.00 0.00 0.00 2.01
129 130 4.099419 TCACTCTGCTCACTCAAGTTTACA 59.901 41.667 0.00 0.00 0.00 2.41
130 131 4.811024 CACTCTGCTCACTCAAGTTTACAA 59.189 41.667 0.00 0.00 0.00 2.41
131 132 5.050499 CACTCTGCTCACTCAAGTTTACAAG 60.050 44.000 0.00 0.00 0.00 3.16
132 133 5.163405 ACTCTGCTCACTCAAGTTTACAAGA 60.163 40.000 0.00 0.00 0.00 3.02
133 134 5.670485 TCTGCTCACTCAAGTTTACAAGAA 58.330 37.500 0.00 0.00 0.00 2.52
134 135 5.755375 TCTGCTCACTCAAGTTTACAAGAAG 59.245 40.000 0.00 0.00 0.00 2.85
135 136 4.816385 TGCTCACTCAAGTTTACAAGAAGG 59.184 41.667 0.00 0.00 0.00 3.46
136 137 4.816925 GCTCACTCAAGTTTACAAGAAGGT 59.183 41.667 0.00 0.00 0.00 3.50
137 138 5.297029 GCTCACTCAAGTTTACAAGAAGGTT 59.703 40.000 0.00 0.00 0.00 3.50
138 139 6.482308 GCTCACTCAAGTTTACAAGAAGGTTA 59.518 38.462 0.00 0.00 0.00 2.85
139 140 7.518529 GCTCACTCAAGTTTACAAGAAGGTTAC 60.519 40.741 0.00 0.00 0.00 2.50
140 141 7.332557 TCACTCAAGTTTACAAGAAGGTTACA 58.667 34.615 0.00 0.00 0.00 2.41
141 142 7.825270 TCACTCAAGTTTACAAGAAGGTTACAA 59.175 33.333 0.00 0.00 0.00 2.41
142 143 7.908601 CACTCAAGTTTACAAGAAGGTTACAAC 59.091 37.037 0.00 0.00 0.00 3.32
143 144 7.827729 ACTCAAGTTTACAAGAAGGTTACAACT 59.172 33.333 0.00 0.00 0.00 3.16
144 145 9.321562 CTCAAGTTTACAAGAAGGTTACAACTA 57.678 33.333 0.00 0.00 0.00 2.24
145 146 9.669887 TCAAGTTTACAAGAAGGTTACAACTAA 57.330 29.630 0.00 0.00 0.00 2.24
146 147 9.712359 CAAGTTTACAAGAAGGTTACAACTAAC 57.288 33.333 0.00 0.00 32.71 2.34
147 148 9.452287 AAGTTTACAAGAAGGTTACAACTAACA 57.548 29.630 0.00 0.00 34.88 2.41
148 149 9.623000 AGTTTACAAGAAGGTTACAACTAACAT 57.377 29.630 0.00 0.00 34.88 2.71
152 153 8.747538 ACAAGAAGGTTACAACTAACATTTCT 57.252 30.769 0.00 0.00 37.07 2.52
153 154 9.841295 ACAAGAAGGTTACAACTAACATTTCTA 57.159 29.630 8.69 0.00 37.07 2.10
185 186 7.967771 AACATGTTTGCAAAATAAAAACAGC 57.032 28.000 14.67 0.00 44.45 4.40
186 187 6.493978 ACATGTTTGCAAAATAAAAACAGCC 58.506 32.000 14.67 0.00 44.45 4.85
187 188 6.094603 ACATGTTTGCAAAATAAAAACAGCCA 59.905 30.769 14.67 3.29 44.45 4.75
188 189 6.500684 TGTTTGCAAAATAAAAACAGCCAA 57.499 29.167 14.67 0.00 38.51 4.52
189 190 6.913170 TGTTTGCAAAATAAAAACAGCCAAA 58.087 28.000 14.67 0.00 38.51 3.28
190 191 7.370383 TGTTTGCAAAATAAAAACAGCCAAAA 58.630 26.923 14.67 0.00 38.51 2.44
191 192 8.031277 TGTTTGCAAAATAAAAACAGCCAAAAT 58.969 25.926 14.67 0.00 38.51 1.82
192 193 8.530720 GTTTGCAAAATAAAAACAGCCAAAATC 58.469 29.630 14.67 0.00 34.62 2.17
193 194 7.325660 TGCAAAATAAAAACAGCCAAAATCA 57.674 28.000 0.00 0.00 0.00 2.57
194 195 7.938715 TGCAAAATAAAAACAGCCAAAATCAT 58.061 26.923 0.00 0.00 0.00 2.45
195 196 9.060347 TGCAAAATAAAAACAGCCAAAATCATA 57.940 25.926 0.00 0.00 0.00 2.15
196 197 9.328721 GCAAAATAAAAACAGCCAAAATCATAC 57.671 29.630 0.00 0.00 0.00 2.39
204 205 9.995003 AAAACAGCCAAAATCATACAATTTAGA 57.005 25.926 0.00 0.00 0.00 2.10
205 206 9.643693 AAACAGCCAAAATCATACAATTTAGAG 57.356 29.630 0.00 0.00 0.00 2.43
206 207 7.775120 ACAGCCAAAATCATACAATTTAGAGG 58.225 34.615 0.00 0.00 0.00 3.69
207 208 7.397192 ACAGCCAAAATCATACAATTTAGAGGT 59.603 33.333 0.00 0.00 0.00 3.85
208 209 8.902806 CAGCCAAAATCATACAATTTAGAGGTA 58.097 33.333 0.00 0.00 0.00 3.08
209 210 9.646522 AGCCAAAATCATACAATTTAGAGGTAT 57.353 29.630 0.00 0.00 0.00 2.73
249 250 8.717821 TCAATGCAGTAGTATGTGAACTAAAAC 58.282 33.333 0.00 0.00 33.85 2.43
256 257 5.246307 AGTATGTGAACTAAAACCCAGCTC 58.754 41.667 0.00 0.00 0.00 4.09
278 283 4.083537 TCGGAAACTAATGTGTTCATGTGC 60.084 41.667 0.00 0.00 34.19 4.57
295 300 4.765611 CGACACAGAGAATCGCGA 57.234 55.556 13.09 13.09 42.67 5.87
296 301 2.560244 CGACACAGAGAATCGCGAG 58.440 57.895 16.66 1.40 42.67 5.03
297 302 1.467556 CGACACAGAGAATCGCGAGC 61.468 60.000 16.66 9.48 42.67 5.03
298 303 0.179150 GACACAGAGAATCGCGAGCT 60.179 55.000 16.66 14.76 42.67 4.09
299 304 1.064208 GACACAGAGAATCGCGAGCTA 59.936 52.381 16.66 0.00 42.67 3.32
300 305 1.472878 ACACAGAGAATCGCGAGCTAA 59.527 47.619 16.66 0.00 42.67 3.09
301 306 2.099921 ACACAGAGAATCGCGAGCTAAT 59.900 45.455 16.66 4.18 42.67 1.73
308 313 6.019479 CAGAGAATCGCGAGCTAATTAAGTTT 60.019 38.462 16.66 0.00 42.67 2.66
319 324 7.049799 AGCTAATTAAGTTTCAAAAGGCACA 57.950 32.000 0.00 0.00 0.00 4.57
335 340 8.938906 CAAAAGGCACATTAGAAAAATTATGCT 58.061 29.630 0.00 0.00 32.44 3.79
337 342 9.586435 AAAGGCACATTAGAAAAATTATGCTAC 57.414 29.630 0.00 0.00 32.44 3.58
339 344 7.561356 AGGCACATTAGAAAAATTATGCTACCT 59.439 33.333 0.00 0.00 32.44 3.08
340 345 8.197439 GGCACATTAGAAAAATTATGCTACCTT 58.803 33.333 0.00 0.00 32.44 3.50
341 346 9.237846 GCACATTAGAAAAATTATGCTACCTTC 57.762 33.333 0.00 0.00 0.00 3.46
392 397 6.201517 CCTGGCAATTAATCAACTATTGTCG 58.798 40.000 0.00 0.00 36.84 4.35
427 432 7.389232 TGTCATCACACTCAATTCAACTCTAT 58.611 34.615 0.00 0.00 0.00 1.98
449 454 5.947228 TTAAACAATGAGCTCCAAGTCAG 57.053 39.130 12.15 0.00 0.00 3.51
450 455 3.777106 AACAATGAGCTCCAAGTCAGA 57.223 42.857 12.15 0.00 0.00 3.27
451 456 3.051081 ACAATGAGCTCCAAGTCAGAC 57.949 47.619 12.15 0.00 0.00 3.51
452 457 2.636893 ACAATGAGCTCCAAGTCAGACT 59.363 45.455 12.15 0.00 0.00 3.24
453 458 3.834813 ACAATGAGCTCCAAGTCAGACTA 59.165 43.478 12.15 0.00 0.00 2.59
454 459 4.180057 CAATGAGCTCCAAGTCAGACTAC 58.820 47.826 12.15 0.00 0.00 2.73
455 460 2.876581 TGAGCTCCAAGTCAGACTACA 58.123 47.619 12.15 0.00 0.00 2.74
456 461 2.558795 TGAGCTCCAAGTCAGACTACAC 59.441 50.000 12.15 0.00 0.00 2.90
457 462 1.542030 AGCTCCAAGTCAGACTACACG 59.458 52.381 2.64 0.00 0.00 4.49
458 463 1.983972 CTCCAAGTCAGACTACACGC 58.016 55.000 2.64 0.00 0.00 5.34
563 572 3.930229 CGGTATACAGTGCAGCTTAACAA 59.070 43.478 5.01 0.00 0.00 2.83
625 634 1.516386 CGGCACAGCAGTACTACGG 60.516 63.158 0.00 0.00 0.00 4.02
798 807 4.069232 CCGCCGTGGCTCTTCTGA 62.069 66.667 9.55 0.00 39.32 3.27
901 910 1.135660 CGAGCTTCTCAACTGAGCGTA 60.136 52.381 1.61 0.00 41.80 4.42
905 914 3.444034 AGCTTCTCAACTGAGCGTATACA 59.556 43.478 3.32 0.00 41.80 2.29
933 942 1.942223 CGTGCCATGCATGCATTCG 60.942 57.895 30.32 24.58 41.91 3.34
953 963 0.541063 TGTCTGGGGACTGTCGCTTA 60.541 55.000 21.89 11.98 42.54 3.09
1045 3619 2.031012 CCCTGCACTGCTTCGTGA 59.969 61.111 1.98 0.00 37.06 4.35
1094 3671 0.453793 CTTCTCTCCTCATGCGACGT 59.546 55.000 0.00 0.00 0.00 4.34
1153 3735 0.179215 GCAAAGTCGCCGTTGAGATG 60.179 55.000 0.00 0.00 32.55 2.90
1167 3751 3.874392 TGAGATGAGACGATGAAGCAA 57.126 42.857 0.00 0.00 0.00 3.91
1175 3763 4.070581 AGACGATGAAGCAATTTTGTCG 57.929 40.909 0.00 0.00 34.30 4.35
1264 3854 2.361567 CCATGCTTTTCCCCTGCCC 61.362 63.158 0.00 0.00 0.00 5.36
1282 3872 1.078759 CCGCTTCGTGCTACTCCAAG 61.079 60.000 2.29 0.00 40.11 3.61
1333 3923 0.687354 AGAAGTTCTGTGGTGGCGAT 59.313 50.000 4.10 0.00 0.00 4.58
1369 3959 2.044946 GGGGCCTTCTGCAACGAT 60.045 61.111 0.84 0.00 43.89 3.73
1443 4043 2.915604 TCCAAGAGGAAATGGAGAAGCT 59.084 45.455 0.00 0.00 42.23 3.74
1499 4101 4.200874 TCTTTGTAAACCAGCTTTTCCGA 58.799 39.130 0.00 0.00 0.00 4.55
1581 4190 9.122613 GAGACAAATCAAAAGTAATGAAGCTTC 57.877 33.333 19.89 19.89 0.00 3.86
1633 4247 5.043248 ACAGCATAAGCACAAACAAGTTTC 58.957 37.500 0.00 0.00 45.49 2.78
1721 4337 5.597813 AATGCAAGTCTCTTTACACTTCG 57.402 39.130 0.00 0.00 30.06 3.79
1810 4431 7.107639 ACATACATTAATTTAGCCCCACAAC 57.892 36.000 0.00 0.00 0.00 3.32
1812 4433 7.179338 ACATACATTAATTTAGCCCCACAACAA 59.821 33.333 0.00 0.00 0.00 2.83
1816 4437 8.203485 ACATTAATTTAGCCCCACAACAATATG 58.797 33.333 0.00 0.00 0.00 1.78
1817 4438 4.670896 ATTTAGCCCCACAACAATATGC 57.329 40.909 0.00 0.00 0.00 3.14
1819 4440 1.037030 AGCCCCACAACAATATGCCG 61.037 55.000 0.00 0.00 0.00 5.69
1820 4441 1.319614 GCCCCACAACAATATGCCGT 61.320 55.000 0.00 0.00 0.00 5.68
1821 4442 0.738389 CCCCACAACAATATGCCGTC 59.262 55.000 0.00 0.00 0.00 4.79
1822 4443 1.681780 CCCCACAACAATATGCCGTCT 60.682 52.381 0.00 0.00 0.00 4.18
1823 4444 2.420827 CCCCACAACAATATGCCGTCTA 60.421 50.000 0.00 0.00 0.00 2.59
1824 4445 3.476552 CCCACAACAATATGCCGTCTAT 58.523 45.455 0.00 0.00 0.00 1.98
1825 4446 3.882888 CCCACAACAATATGCCGTCTATT 59.117 43.478 0.00 0.00 0.00 1.73
1826 4447 4.338118 CCCACAACAATATGCCGTCTATTT 59.662 41.667 0.00 0.00 0.00 1.40
1827 4448 5.273170 CCACAACAATATGCCGTCTATTTG 58.727 41.667 0.00 0.00 0.00 2.32
1828 4449 5.065859 CCACAACAATATGCCGTCTATTTGA 59.934 40.000 0.00 0.00 0.00 2.69
1829 4450 6.238731 CCACAACAATATGCCGTCTATTTGAT 60.239 38.462 0.00 0.00 0.00 2.57
1830 4451 6.634035 CACAACAATATGCCGTCTATTTGATG 59.366 38.462 0.00 0.00 0.00 3.07
1831 4452 6.542005 ACAACAATATGCCGTCTATTTGATGA 59.458 34.615 0.00 0.00 33.63 2.92
1832 4453 6.791887 ACAATATGCCGTCTATTTGATGAG 57.208 37.500 0.00 0.00 33.63 2.90
1833 4454 5.180117 ACAATATGCCGTCTATTTGATGAGC 59.820 40.000 0.00 0.00 33.63 4.26
1834 4455 2.988010 TGCCGTCTATTTGATGAGCT 57.012 45.000 0.00 0.00 33.63 4.09
1835 4456 4.607293 ATGCCGTCTATTTGATGAGCTA 57.393 40.909 0.00 0.00 33.63 3.32
1836 4457 4.400529 TGCCGTCTATTTGATGAGCTAA 57.599 40.909 0.00 0.00 33.63 3.09
1837 4458 4.371786 TGCCGTCTATTTGATGAGCTAAG 58.628 43.478 0.00 0.00 33.63 2.18
1838 4459 4.141937 TGCCGTCTATTTGATGAGCTAAGT 60.142 41.667 0.00 0.00 33.63 2.24
1839 4460 5.068591 TGCCGTCTATTTGATGAGCTAAGTA 59.931 40.000 0.00 0.00 33.63 2.24
1840 4461 5.631512 GCCGTCTATTTGATGAGCTAAGTAG 59.368 44.000 0.00 0.00 33.63 2.57
1859 4480 5.347012 GTAGCGAACCTACATCTAGAGAC 57.653 47.826 0.00 0.00 44.75 3.36
1860 4481 3.215975 AGCGAACCTACATCTAGAGACC 58.784 50.000 0.00 0.00 0.00 3.85
1861 4482 2.950309 GCGAACCTACATCTAGAGACCA 59.050 50.000 0.00 0.00 0.00 4.02
1862 4483 3.380637 GCGAACCTACATCTAGAGACCAA 59.619 47.826 0.00 0.00 0.00 3.67
1863 4484 4.142227 GCGAACCTACATCTAGAGACCAAA 60.142 45.833 0.00 0.00 0.00 3.28
1864 4485 5.341617 CGAACCTACATCTAGAGACCAAAC 58.658 45.833 0.00 0.00 0.00 2.93
1865 4486 4.985538 ACCTACATCTAGAGACCAAACG 57.014 45.455 0.00 0.00 0.00 3.60
1866 4487 3.130693 ACCTACATCTAGAGACCAAACGC 59.869 47.826 0.00 0.00 0.00 4.84
1867 4488 2.279582 ACATCTAGAGACCAAACGCG 57.720 50.000 3.53 3.53 0.00 6.01
1868 4489 0.924090 CATCTAGAGACCAAACGCGC 59.076 55.000 5.73 0.00 0.00 6.86
1869 4490 0.530744 ATCTAGAGACCAAACGCGCA 59.469 50.000 5.73 0.00 0.00 6.09
1870 4491 0.388134 TCTAGAGACCAAACGCGCAC 60.388 55.000 5.73 0.00 0.00 5.34
1871 4492 1.352156 CTAGAGACCAAACGCGCACC 61.352 60.000 5.73 0.00 0.00 5.01
1872 4493 2.089887 TAGAGACCAAACGCGCACCA 62.090 55.000 5.73 0.00 0.00 4.17
1873 4494 3.236618 GAGACCAAACGCGCACCAC 62.237 63.158 5.73 0.00 0.00 4.16
1874 4495 4.322385 GACCAAACGCGCACCACC 62.322 66.667 5.73 0.00 0.00 4.61
1891 4512 4.281946 CGCTCGCGGTAGTAAGTC 57.718 61.111 6.13 0.00 35.56 3.01
1892 4513 1.650536 CGCTCGCGGTAGTAAGTCG 60.651 63.158 6.13 0.00 35.56 4.18
1893 4514 1.298190 GCTCGCGGTAGTAAGTCGG 60.298 63.158 6.13 0.00 0.00 4.79
1894 4515 1.298190 CTCGCGGTAGTAAGTCGGC 60.298 63.158 6.13 0.00 0.00 5.54
1895 4516 2.278401 CGCGGTAGTAAGTCGGCC 60.278 66.667 0.00 0.00 0.00 6.13
1896 4517 2.887360 GCGGTAGTAAGTCGGCCA 59.113 61.111 2.24 0.00 0.00 5.36
1897 4518 1.216178 GCGGTAGTAAGTCGGCCAA 59.784 57.895 2.24 0.00 0.00 4.52
1898 4519 0.179092 GCGGTAGTAAGTCGGCCAAT 60.179 55.000 2.24 0.00 0.00 3.16
1899 4520 1.741394 GCGGTAGTAAGTCGGCCAATT 60.741 52.381 2.24 0.00 0.00 2.32
1900 4521 2.624636 CGGTAGTAAGTCGGCCAATTT 58.375 47.619 2.24 0.00 0.00 1.82
1901 4522 2.606272 CGGTAGTAAGTCGGCCAATTTC 59.394 50.000 2.24 0.00 0.00 2.17
1902 4523 2.606272 GGTAGTAAGTCGGCCAATTTCG 59.394 50.000 2.24 0.00 0.00 3.46
1903 4524 2.467566 AGTAAGTCGGCCAATTTCGT 57.532 45.000 2.24 0.00 0.00 3.85
1904 4525 2.344025 AGTAAGTCGGCCAATTTCGTC 58.656 47.619 2.24 0.00 0.00 4.20
1905 4526 2.028385 AGTAAGTCGGCCAATTTCGTCT 60.028 45.455 2.24 0.00 0.00 4.18
1906 4527 1.156736 AAGTCGGCCAATTTCGTCTG 58.843 50.000 2.24 0.00 0.00 3.51
1907 4528 0.034896 AGTCGGCCAATTTCGTCTGT 59.965 50.000 2.24 0.00 0.00 3.41
1908 4529 0.872388 GTCGGCCAATTTCGTCTGTT 59.128 50.000 2.24 0.00 0.00 3.16
1909 4530 1.136057 GTCGGCCAATTTCGTCTGTTC 60.136 52.381 2.24 0.00 0.00 3.18
1910 4531 1.156736 CGGCCAATTTCGTCTGTTCT 58.843 50.000 2.24 0.00 0.00 3.01
1911 4532 2.028839 TCGGCCAATTTCGTCTGTTCTA 60.029 45.455 2.24 0.00 0.00 2.10
1912 4533 2.936498 CGGCCAATTTCGTCTGTTCTAT 59.064 45.455 2.24 0.00 0.00 1.98
1913 4534 3.242413 CGGCCAATTTCGTCTGTTCTATG 60.242 47.826 2.24 0.00 0.00 2.23
1914 4535 3.065371 GGCCAATTTCGTCTGTTCTATGG 59.935 47.826 0.00 0.00 0.00 2.74
1915 4536 3.689649 GCCAATTTCGTCTGTTCTATGGT 59.310 43.478 0.00 0.00 0.00 3.55
1916 4537 4.201822 GCCAATTTCGTCTGTTCTATGGTC 60.202 45.833 0.00 0.00 0.00 4.02
1917 4538 5.178797 CCAATTTCGTCTGTTCTATGGTCT 58.821 41.667 0.00 0.00 0.00 3.85
1918 4539 5.643777 CCAATTTCGTCTGTTCTATGGTCTT 59.356 40.000 0.00 0.00 0.00 3.01
1919 4540 6.149474 CCAATTTCGTCTGTTCTATGGTCTTT 59.851 38.462 0.00 0.00 0.00 2.52
1920 4541 7.308589 CCAATTTCGTCTGTTCTATGGTCTTTT 60.309 37.037 0.00 0.00 0.00 2.27
1921 4542 6.780706 TTTCGTCTGTTCTATGGTCTTTTC 57.219 37.500 0.00 0.00 0.00 2.29
1922 4543 5.723672 TCGTCTGTTCTATGGTCTTTTCT 57.276 39.130 0.00 0.00 0.00 2.52
1923 4544 6.097915 TCGTCTGTTCTATGGTCTTTTCTT 57.902 37.500 0.00 0.00 0.00 2.52
1924 4545 6.522054 TCGTCTGTTCTATGGTCTTTTCTTT 58.478 36.000 0.00 0.00 0.00 2.52
1925 4546 6.423905 TCGTCTGTTCTATGGTCTTTTCTTTG 59.576 38.462 0.00 0.00 0.00 2.77
1926 4547 6.347725 CGTCTGTTCTATGGTCTTTTCTTTGG 60.348 42.308 0.00 0.00 0.00 3.28
1927 4548 6.486993 GTCTGTTCTATGGTCTTTTCTTTGGT 59.513 38.462 0.00 0.00 0.00 3.67
1928 4549 7.013369 GTCTGTTCTATGGTCTTTTCTTTGGTT 59.987 37.037 0.00 0.00 0.00 3.67
1929 4550 7.559897 TCTGTTCTATGGTCTTTTCTTTGGTTT 59.440 33.333 0.00 0.00 0.00 3.27
1930 4551 8.073467 TGTTCTATGGTCTTTTCTTTGGTTTT 57.927 30.769 0.00 0.00 0.00 2.43
1931 4552 8.194769 TGTTCTATGGTCTTTTCTTTGGTTTTC 58.805 33.333 0.00 0.00 0.00 2.29
1932 4553 7.284919 TCTATGGTCTTTTCTTTGGTTTTCC 57.715 36.000 0.00 0.00 41.14 3.13
1944 4565 2.787601 GGTTTTCCAACGGTTTCCTC 57.212 50.000 0.00 0.00 40.31 3.71
1945 4566 2.025898 GGTTTTCCAACGGTTTCCTCA 58.974 47.619 0.00 0.00 40.31 3.86
1946 4567 2.427812 GGTTTTCCAACGGTTTCCTCAA 59.572 45.455 0.00 0.00 40.31 3.02
1947 4568 3.441163 GTTTTCCAACGGTTTCCTCAAC 58.559 45.455 0.00 0.00 34.18 3.18
1948 4569 6.753409 GGTTTTCCAACGGTTTCCTCAACC 62.753 50.000 0.00 0.00 44.78 3.77
1958 4579 4.307443 GTTTCCTCAACCAGACCTTTTG 57.693 45.455 0.00 0.00 0.00 2.44
1987 4608 9.508642 TTTTTATGTGTTCTTTCTTTGGGTTTT 57.491 25.926 0.00 0.00 0.00 2.43
1988 4609 8.710835 TTTATGTGTTCTTTCTTTGGGTTTTC 57.289 30.769 0.00 0.00 0.00 2.29
1989 4610 5.993748 TGTGTTCTTTCTTTGGGTTTTCT 57.006 34.783 0.00 0.00 0.00 2.52
1990 4611 5.961272 TGTGTTCTTTCTTTGGGTTTTCTC 58.039 37.500 0.00 0.00 0.00 2.87
1991 4612 5.034797 GTGTTCTTTCTTTGGGTTTTCTCG 58.965 41.667 0.00 0.00 0.00 4.04
1992 4613 4.944930 TGTTCTTTCTTTGGGTTTTCTCGA 59.055 37.500 0.00 0.00 0.00 4.04
1993 4614 5.592688 TGTTCTTTCTTTGGGTTTTCTCGAT 59.407 36.000 0.00 0.00 0.00 3.59
1994 4615 6.096282 TGTTCTTTCTTTGGGTTTTCTCGATT 59.904 34.615 0.00 0.00 0.00 3.34
1995 4616 6.709018 TCTTTCTTTGGGTTTTCTCGATTT 57.291 33.333 0.00 0.00 0.00 2.17
1996 4617 7.107639 TCTTTCTTTGGGTTTTCTCGATTTT 57.892 32.000 0.00 0.00 0.00 1.82
1997 4618 7.552459 TCTTTCTTTGGGTTTTCTCGATTTTT 58.448 30.769 0.00 0.00 0.00 1.94
1998 4619 7.491048 TCTTTCTTTGGGTTTTCTCGATTTTTG 59.509 33.333 0.00 0.00 0.00 2.44
1999 4620 5.047188 TCTTTGGGTTTTCTCGATTTTTGC 58.953 37.500 0.00 0.00 0.00 3.68
2000 4621 4.664150 TTGGGTTTTCTCGATTTTTGCT 57.336 36.364 0.00 0.00 0.00 3.91
2001 4622 4.664150 TGGGTTTTCTCGATTTTTGCTT 57.336 36.364 0.00 0.00 0.00 3.91
2002 4623 5.017294 TGGGTTTTCTCGATTTTTGCTTT 57.983 34.783 0.00 0.00 0.00 3.51
2003 4624 5.423886 TGGGTTTTCTCGATTTTTGCTTTT 58.576 33.333 0.00 0.00 0.00 2.27
2004 4625 5.877564 TGGGTTTTCTCGATTTTTGCTTTTT 59.122 32.000 0.00 0.00 0.00 1.94
2005 4626 6.036626 TGGGTTTTCTCGATTTTTGCTTTTTC 59.963 34.615 0.00 0.00 0.00 2.29
2006 4627 6.418956 GGTTTTCTCGATTTTTGCTTTTTCC 58.581 36.000 0.00 0.00 0.00 3.13
2007 4628 6.036626 GGTTTTCTCGATTTTTGCTTTTTCCA 59.963 34.615 0.00 0.00 0.00 3.53
2008 4629 6.826893 TTTCTCGATTTTTGCTTTTTCCAG 57.173 33.333 0.00 0.00 0.00 3.86
2009 4630 5.514274 TCTCGATTTTTGCTTTTTCCAGT 57.486 34.783 0.00 0.00 0.00 4.00
2010 4631 5.901552 TCTCGATTTTTGCTTTTTCCAGTT 58.098 33.333 0.00 0.00 0.00 3.16
2011 4632 6.337356 TCTCGATTTTTGCTTTTTCCAGTTT 58.663 32.000 0.00 0.00 0.00 2.66
2012 4633 6.475402 TCTCGATTTTTGCTTTTTCCAGTTTC 59.525 34.615 0.00 0.00 0.00 2.78
2013 4634 5.522097 TCGATTTTTGCTTTTTCCAGTTTCC 59.478 36.000 0.00 0.00 0.00 3.13
2014 4635 5.523552 CGATTTTTGCTTTTTCCAGTTTCCT 59.476 36.000 0.00 0.00 0.00 3.36
2015 4636 6.292328 CGATTTTTGCTTTTTCCAGTTTCCTC 60.292 38.462 0.00 0.00 0.00 3.71
2016 4637 5.675684 TTTTGCTTTTTCCAGTTTCCTCT 57.324 34.783 0.00 0.00 0.00 3.69
2017 4638 5.675684 TTTGCTTTTTCCAGTTTCCTCTT 57.324 34.783 0.00 0.00 0.00 2.85
2018 4639 4.918810 TGCTTTTTCCAGTTTCCTCTTC 57.081 40.909 0.00 0.00 0.00 2.87
2019 4640 4.536765 TGCTTTTTCCAGTTTCCTCTTCT 58.463 39.130 0.00 0.00 0.00 2.85
2020 4641 4.956075 TGCTTTTTCCAGTTTCCTCTTCTT 59.044 37.500 0.00 0.00 0.00 2.52
2021 4642 5.422012 TGCTTTTTCCAGTTTCCTCTTCTTT 59.578 36.000 0.00 0.00 0.00 2.52
2022 4643 6.070824 TGCTTTTTCCAGTTTCCTCTTCTTTT 60.071 34.615 0.00 0.00 0.00 2.27
2023 4644 6.477033 GCTTTTTCCAGTTTCCTCTTCTTTTC 59.523 38.462 0.00 0.00 0.00 2.29
2024 4645 7.631594 GCTTTTTCCAGTTTCCTCTTCTTTTCT 60.632 37.037 0.00 0.00 0.00 2.52
2025 4646 7.718334 TTTTCCAGTTTCCTCTTCTTTTCTT 57.282 32.000 0.00 0.00 0.00 2.52
2026 4647 7.718334 TTTCCAGTTTCCTCTTCTTTTCTTT 57.282 32.000 0.00 0.00 0.00 2.52
2027 4648 7.718334 TTCCAGTTTCCTCTTCTTTTCTTTT 57.282 32.000 0.00 0.00 0.00 2.27
2028 4649 7.718334 TCCAGTTTCCTCTTCTTTTCTTTTT 57.282 32.000 0.00 0.00 0.00 1.94
2029 4650 8.817092 TCCAGTTTCCTCTTCTTTTCTTTTTA 57.183 30.769 0.00 0.00 0.00 1.52
2030 4651 9.421399 TCCAGTTTCCTCTTCTTTTCTTTTTAT 57.579 29.630 0.00 0.00 0.00 1.40
2103 4724 9.076781 TCATGAACCTTTTGAAATATGAGAACA 57.923 29.630 0.00 0.00 0.00 3.18
2104 4725 9.695526 CATGAACCTTTTGAAATATGAGAACAA 57.304 29.630 0.00 0.00 0.00 2.83
2122 4743 9.528018 TGAGAACAATTTTTAAACTTCATGGTC 57.472 29.630 0.00 0.00 0.00 4.02
2123 4744 8.574196 AGAACAATTTTTAAACTTCATGGTCG 57.426 30.769 0.00 0.00 0.00 4.79
2124 4745 8.194769 AGAACAATTTTTAAACTTCATGGTCGT 58.805 29.630 0.00 0.00 0.00 4.34
2125 4746 9.453325 GAACAATTTTTAAACTTCATGGTCGTA 57.547 29.630 0.00 0.00 0.00 3.43
2126 4747 9.974980 AACAATTTTTAAACTTCATGGTCGTAT 57.025 25.926 0.00 0.00 0.00 3.06
2127 4748 9.974980 ACAATTTTTAAACTTCATGGTCGTATT 57.025 25.926 0.00 0.00 0.00 1.89
2136 4757 8.519492 AACTTCATGGTCGTATTTTCAAATTG 57.481 30.769 0.00 0.00 0.00 2.32
2137 4758 7.881142 ACTTCATGGTCGTATTTTCAAATTGA 58.119 30.769 0.00 0.00 0.00 2.57
2138 4759 8.023128 ACTTCATGGTCGTATTTTCAAATTGAG 58.977 33.333 0.00 0.00 0.00 3.02
2139 4760 7.680442 TCATGGTCGTATTTTCAAATTGAGA 57.320 32.000 0.00 0.00 0.00 3.27
2140 4761 8.105097 TCATGGTCGTATTTTCAAATTGAGAA 57.895 30.769 1.38 1.38 0.00 2.87
2141 4762 8.020819 TCATGGTCGTATTTTCAAATTGAGAAC 58.979 33.333 0.88 0.00 0.00 3.01
2142 4763 7.265647 TGGTCGTATTTTCAAATTGAGAACA 57.734 32.000 0.88 0.00 0.00 3.18
2143 4764 7.881142 TGGTCGTATTTTCAAATTGAGAACAT 58.119 30.769 0.88 0.00 0.00 2.71
2144 4765 8.356657 TGGTCGTATTTTCAAATTGAGAACATT 58.643 29.630 0.88 0.00 0.00 2.71
2145 4766 9.834628 GGTCGTATTTTCAAATTGAGAACATTA 57.165 29.630 0.88 0.00 0.00 1.90
2203 4824 9.579768 TGAAATCATGAATAATTTTAACCCGTG 57.420 29.630 0.00 0.00 0.00 4.94
2204 4825 9.796120 GAAATCATGAATAATTTTAACCCGTGA 57.204 29.630 0.00 0.00 0.00 4.35
2206 4827 9.581099 AATCATGAATAATTTTAACCCGTGAAC 57.419 29.630 0.00 0.00 0.00 3.18
2207 4828 8.112016 TCATGAATAATTTTAACCCGTGAACA 57.888 30.769 0.00 0.00 0.00 3.18
2208 4829 8.744652 TCATGAATAATTTTAACCCGTGAACAT 58.255 29.630 0.00 0.00 0.00 2.71
2209 4830 9.364989 CATGAATAATTTTAACCCGTGAACATT 57.635 29.630 0.00 0.00 0.00 2.71
2210 4831 9.936759 ATGAATAATTTTAACCCGTGAACATTT 57.063 25.926 0.00 0.00 0.00 2.32
2216 4837 9.765795 AATTTTAACCCGTGAACATTTATTGAA 57.234 25.926 0.00 0.00 0.00 2.69
2217 4838 9.765795 ATTTTAACCCGTGAACATTTATTGAAA 57.234 25.926 0.00 0.00 0.00 2.69
2218 4839 9.765795 TTTTAACCCGTGAACATTTATTGAAAT 57.234 25.926 0.00 0.00 35.56 2.17
2219 4840 8.973835 TTAACCCGTGAACATTTATTGAAATC 57.026 30.769 0.00 0.00 32.73 2.17
2220 4841 5.961272 ACCCGTGAACATTTATTGAAATCC 58.039 37.500 0.00 0.00 32.73 3.01
2221 4842 5.478679 ACCCGTGAACATTTATTGAAATCCA 59.521 36.000 0.00 0.00 32.73 3.41
2222 4843 6.035843 CCCGTGAACATTTATTGAAATCCAG 58.964 40.000 0.00 0.00 32.73 3.86
2223 4844 6.350110 CCCGTGAACATTTATTGAAATCCAGT 60.350 38.462 0.00 0.00 32.73 4.00
2224 4845 7.148154 CCCGTGAACATTTATTGAAATCCAGTA 60.148 37.037 0.00 0.00 32.73 2.74
2225 4846 8.240682 CCGTGAACATTTATTGAAATCCAGTAA 58.759 33.333 0.00 0.00 32.73 2.24
2226 4847 9.787532 CGTGAACATTTATTGAAATCCAGTAAT 57.212 29.630 0.00 0.00 32.73 1.89
2278 4899 7.509141 TTCATGAGCATTGTTTAAGTCTTCA 57.491 32.000 0.00 0.00 0.00 3.02
2279 4900 7.509141 TCATGAGCATTGTTTAAGTCTTCAA 57.491 32.000 0.00 0.00 0.00 2.69
2280 4901 7.362662 TCATGAGCATTGTTTAAGTCTTCAAC 58.637 34.615 3.14 3.14 0.00 3.18
2281 4902 6.691754 TGAGCATTGTTTAAGTCTTCAACA 57.308 33.333 8.03 8.03 0.00 3.33
2282 4903 7.275888 TGAGCATTGTTTAAGTCTTCAACAT 57.724 32.000 12.05 0.00 30.64 2.71
2283 4904 7.715657 TGAGCATTGTTTAAGTCTTCAACATT 58.284 30.769 12.05 7.07 30.64 2.71
2284 4905 8.845227 TGAGCATTGTTTAAGTCTTCAACATTA 58.155 29.630 12.05 0.93 30.64 1.90
2285 4906 9.846248 GAGCATTGTTTAAGTCTTCAACATTAT 57.154 29.630 12.05 2.99 30.64 1.28
2296 4917 9.613428 AAGTCTTCAACATTATTTGATATCCGA 57.387 29.630 0.00 0.00 35.42 4.55
2297 4918 9.265901 AGTCTTCAACATTATTTGATATCCGAG 57.734 33.333 0.00 0.00 35.42 4.63
2298 4919 9.261180 GTCTTCAACATTATTTGATATCCGAGA 57.739 33.333 0.00 0.00 35.42 4.04
2299 4920 9.830975 TCTTCAACATTATTTGATATCCGAGAA 57.169 29.630 0.00 0.00 35.42 2.87
2300 4921 9.869844 CTTCAACATTATTTGATATCCGAGAAC 57.130 33.333 0.00 0.00 35.42 3.01
2301 4922 8.956533 TCAACATTATTTGATATCCGAGAACA 57.043 30.769 0.00 0.00 30.29 3.18
2302 4923 9.559732 TCAACATTATTTGATATCCGAGAACAT 57.440 29.630 0.00 0.00 30.29 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.736414 TCCTACGCTAGAACTCATAAATATAGT 57.264 33.333 0.00 0.00 0.00 2.12
29 30 9.909644 GAAATCCTACGCTAGAACTCATAAATA 57.090 33.333 0.00 0.00 0.00 1.40
30 31 8.643324 AGAAATCCTACGCTAGAACTCATAAAT 58.357 33.333 0.00 0.00 0.00 1.40
31 32 8.008513 AGAAATCCTACGCTAGAACTCATAAA 57.991 34.615 0.00 0.00 0.00 1.40
32 33 7.584122 AGAAATCCTACGCTAGAACTCATAA 57.416 36.000 0.00 0.00 0.00 1.90
33 34 8.687292 TTAGAAATCCTACGCTAGAACTCATA 57.313 34.615 0.00 0.00 0.00 2.15
34 35 7.584122 TTAGAAATCCTACGCTAGAACTCAT 57.416 36.000 0.00 0.00 0.00 2.90
35 36 7.122353 AGTTTAGAAATCCTACGCTAGAACTCA 59.878 37.037 0.00 0.00 0.00 3.41
36 37 7.482474 AGTTTAGAAATCCTACGCTAGAACTC 58.518 38.462 0.00 0.00 0.00 3.01
37 38 7.407393 AGTTTAGAAATCCTACGCTAGAACT 57.593 36.000 0.00 0.00 0.00 3.01
38 39 7.010275 CCAAGTTTAGAAATCCTACGCTAGAAC 59.990 40.741 0.00 0.00 0.00 3.01
39 40 7.039882 CCAAGTTTAGAAATCCTACGCTAGAA 58.960 38.462 0.00 0.00 0.00 2.10
40 41 6.406624 CCCAAGTTTAGAAATCCTACGCTAGA 60.407 42.308 0.00 0.00 0.00 2.43
41 42 5.753921 CCCAAGTTTAGAAATCCTACGCTAG 59.246 44.000 0.00 0.00 0.00 3.42
42 43 5.422970 TCCCAAGTTTAGAAATCCTACGCTA 59.577 40.000 0.00 0.00 0.00 4.26
43 44 4.224370 TCCCAAGTTTAGAAATCCTACGCT 59.776 41.667 0.00 0.00 0.00 5.07
44 45 4.510571 TCCCAAGTTTAGAAATCCTACGC 58.489 43.478 0.00 0.00 0.00 4.42
45 46 6.258068 GTGATCCCAAGTTTAGAAATCCTACG 59.742 42.308 0.00 0.00 0.00 3.51
46 47 6.542735 GGTGATCCCAAGTTTAGAAATCCTAC 59.457 42.308 0.00 0.00 0.00 3.18
47 48 6.631766 CGGTGATCCCAAGTTTAGAAATCCTA 60.632 42.308 0.00 0.00 0.00 2.94
48 49 5.510430 GGTGATCCCAAGTTTAGAAATCCT 58.490 41.667 0.00 0.00 0.00 3.24
49 50 4.335594 CGGTGATCCCAAGTTTAGAAATCC 59.664 45.833 0.00 0.00 0.00 3.01
50 51 4.335594 CCGGTGATCCCAAGTTTAGAAATC 59.664 45.833 0.00 0.00 0.00 2.17
51 52 4.270008 CCGGTGATCCCAAGTTTAGAAAT 58.730 43.478 0.00 0.00 0.00 2.17
52 53 3.560453 CCCGGTGATCCCAAGTTTAGAAA 60.560 47.826 0.00 0.00 0.00 2.52
53 54 2.026636 CCCGGTGATCCCAAGTTTAGAA 60.027 50.000 0.00 0.00 0.00 2.10
54 55 1.557832 CCCGGTGATCCCAAGTTTAGA 59.442 52.381 0.00 0.00 0.00 2.10
55 56 1.557832 TCCCGGTGATCCCAAGTTTAG 59.442 52.381 0.00 0.00 0.00 1.85
56 57 1.557832 CTCCCGGTGATCCCAAGTTTA 59.442 52.381 0.00 0.00 0.00 2.01
57 58 0.328258 CTCCCGGTGATCCCAAGTTT 59.672 55.000 0.00 0.00 0.00 2.66
58 59 0.840722 ACTCCCGGTGATCCCAAGTT 60.841 55.000 0.00 0.00 0.00 2.66
59 60 0.042131 TACTCCCGGTGATCCCAAGT 59.958 55.000 0.00 0.00 0.00 3.16
60 61 0.464452 GTACTCCCGGTGATCCCAAG 59.536 60.000 0.00 0.00 0.00 3.61
61 62 0.042131 AGTACTCCCGGTGATCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
62 63 0.396695 GAGTACTCCCGGTGATCCCA 60.397 60.000 12.13 0.00 0.00 4.37
63 64 1.114119 GGAGTACTCCCGGTGATCCC 61.114 65.000 28.87 2.34 43.94 3.85
64 65 2.427742 GGAGTACTCCCGGTGATCC 58.572 63.158 28.87 3.41 43.94 3.36
94 95 4.586421 TGAGCAGAGTGAGAACCTATATGG 59.414 45.833 0.00 0.00 42.93 2.74
95 96 5.301551 AGTGAGCAGAGTGAGAACCTATATG 59.698 44.000 0.00 0.00 0.00 1.78
96 97 5.454062 AGTGAGCAGAGTGAGAACCTATAT 58.546 41.667 0.00 0.00 0.00 0.86
97 98 4.861196 AGTGAGCAGAGTGAGAACCTATA 58.139 43.478 0.00 0.00 0.00 1.31
98 99 3.699038 GAGTGAGCAGAGTGAGAACCTAT 59.301 47.826 0.00 0.00 0.00 2.57
99 100 3.085533 GAGTGAGCAGAGTGAGAACCTA 58.914 50.000 0.00 0.00 0.00 3.08
100 101 1.892474 GAGTGAGCAGAGTGAGAACCT 59.108 52.381 0.00 0.00 0.00 3.50
101 102 1.615883 TGAGTGAGCAGAGTGAGAACC 59.384 52.381 0.00 0.00 0.00 3.62
102 103 3.243704 ACTTGAGTGAGCAGAGTGAGAAC 60.244 47.826 0.00 0.00 0.00 3.01
103 104 2.961741 ACTTGAGTGAGCAGAGTGAGAA 59.038 45.455 0.00 0.00 0.00 2.87
104 105 2.591923 ACTTGAGTGAGCAGAGTGAGA 58.408 47.619 0.00 0.00 0.00 3.27
105 106 3.383620 AACTTGAGTGAGCAGAGTGAG 57.616 47.619 0.00 0.00 0.00 3.51
106 107 3.827008 AAACTTGAGTGAGCAGAGTGA 57.173 42.857 0.00 0.00 0.00 3.41
107 108 4.371786 TGTAAACTTGAGTGAGCAGAGTG 58.628 43.478 0.00 0.00 0.00 3.51
108 109 4.672587 TGTAAACTTGAGTGAGCAGAGT 57.327 40.909 0.00 0.00 0.00 3.24
109 110 5.292765 TCTTGTAAACTTGAGTGAGCAGAG 58.707 41.667 0.00 0.00 0.00 3.35
110 111 5.276461 TCTTGTAAACTTGAGTGAGCAGA 57.724 39.130 0.00 0.00 0.00 4.26
111 112 5.049818 CCTTCTTGTAAACTTGAGTGAGCAG 60.050 44.000 0.00 0.00 0.00 4.24
112 113 4.816385 CCTTCTTGTAAACTTGAGTGAGCA 59.184 41.667 0.00 0.00 0.00 4.26
113 114 4.816925 ACCTTCTTGTAAACTTGAGTGAGC 59.183 41.667 0.00 0.00 0.00 4.26
114 115 6.927294 AACCTTCTTGTAAACTTGAGTGAG 57.073 37.500 0.00 0.00 0.00 3.51
115 116 7.332557 TGTAACCTTCTTGTAAACTTGAGTGA 58.667 34.615 0.00 0.00 0.00 3.41
116 117 7.548196 TGTAACCTTCTTGTAAACTTGAGTG 57.452 36.000 0.00 0.00 0.00 3.51
117 118 7.827729 AGTTGTAACCTTCTTGTAAACTTGAGT 59.172 33.333 0.00 0.00 0.00 3.41
118 119 8.209917 AGTTGTAACCTTCTTGTAAACTTGAG 57.790 34.615 0.00 0.00 0.00 3.02
119 120 9.669887 TTAGTTGTAACCTTCTTGTAAACTTGA 57.330 29.630 0.00 0.00 0.00 3.02
120 121 9.712359 GTTAGTTGTAACCTTCTTGTAAACTTG 57.288 33.333 0.00 0.00 33.58 3.16
121 122 9.452287 TGTTAGTTGTAACCTTCTTGTAAACTT 57.548 29.630 0.00 0.00 38.24 2.66
122 123 9.623000 ATGTTAGTTGTAACCTTCTTGTAAACT 57.377 29.630 0.00 0.00 38.24 2.66
126 127 9.841295 AGAAATGTTAGTTGTAACCTTCTTGTA 57.159 29.630 0.00 0.00 37.18 2.41
127 128 8.747538 AGAAATGTTAGTTGTAACCTTCTTGT 57.252 30.769 0.00 0.00 37.18 3.16
159 160 9.495754 GCTGTTTTTATTTTGCAAACATGTTTA 57.504 25.926 22.87 8.29 39.17 2.01
160 161 7.487509 GGCTGTTTTTATTTTGCAAACATGTTT 59.512 29.630 18.13 18.13 39.17 2.83
161 162 6.971756 GGCTGTTTTTATTTTGCAAACATGTT 59.028 30.769 12.39 4.92 39.17 2.71
162 163 6.094603 TGGCTGTTTTTATTTTGCAAACATGT 59.905 30.769 12.39 0.00 39.17 3.21
163 164 6.493116 TGGCTGTTTTTATTTTGCAAACATG 58.507 32.000 12.39 0.00 39.17 3.21
164 165 6.690194 TGGCTGTTTTTATTTTGCAAACAT 57.310 29.167 12.39 11.09 39.17 2.71
165 166 6.500684 TTGGCTGTTTTTATTTTGCAAACA 57.499 29.167 12.39 4.47 37.93 2.83
166 167 7.803079 TTTTGGCTGTTTTTATTTTGCAAAC 57.197 28.000 12.39 0.00 0.00 2.93
167 168 8.246180 TGATTTTGGCTGTTTTTATTTTGCAAA 58.754 25.926 8.05 8.05 0.00 3.68
168 169 7.765307 TGATTTTGGCTGTTTTTATTTTGCAA 58.235 26.923 0.00 0.00 0.00 4.08
169 170 7.325660 TGATTTTGGCTGTTTTTATTTTGCA 57.674 28.000 0.00 0.00 0.00 4.08
170 171 9.328721 GTATGATTTTGGCTGTTTTTATTTTGC 57.671 29.630 0.00 0.00 0.00 3.68
178 179 9.995003 TCTAAATTGTATGATTTTGGCTGTTTT 57.005 25.926 0.00 0.00 31.96 2.43
179 180 9.643693 CTCTAAATTGTATGATTTTGGCTGTTT 57.356 29.630 0.00 0.00 31.96 2.83
180 181 8.253113 CCTCTAAATTGTATGATTTTGGCTGTT 58.747 33.333 0.00 0.00 31.96 3.16
181 182 7.397192 ACCTCTAAATTGTATGATTTTGGCTGT 59.603 33.333 0.00 0.00 31.96 4.40
182 183 7.775120 ACCTCTAAATTGTATGATTTTGGCTG 58.225 34.615 0.00 0.00 31.96 4.85
183 184 7.961326 ACCTCTAAATTGTATGATTTTGGCT 57.039 32.000 0.00 0.00 31.96 4.75
218 219 9.618890 AGTTCACATACTACTGCATTGAATATT 57.381 29.630 0.00 0.00 0.00 1.28
221 222 9.448438 TTTAGTTCACATACTACTGCATTGAAT 57.552 29.630 0.00 0.00 30.62 2.57
222 223 8.840833 TTTAGTTCACATACTACTGCATTGAA 57.159 30.769 0.00 0.00 30.62 2.69
223 224 8.717821 GTTTTAGTTCACATACTACTGCATTGA 58.282 33.333 0.00 0.00 30.62 2.57
224 225 7.962918 GGTTTTAGTTCACATACTACTGCATTG 59.037 37.037 0.00 0.00 30.62 2.82
228 229 5.935789 TGGGTTTTAGTTCACATACTACTGC 59.064 40.000 0.00 0.00 30.62 4.40
249 250 2.009774 CACATTAGTTTCCGAGCTGGG 58.990 52.381 8.78 8.78 38.76 4.45
256 257 4.158384 GCACATGAACACATTAGTTTCCG 58.842 43.478 0.00 0.00 0.00 4.30
278 283 1.467556 GCTCGCGATTCTCTGTGTCG 61.468 60.000 10.36 0.00 38.34 4.35
285 290 5.891810 AACTTAATTAGCTCGCGATTCTC 57.108 39.130 10.36 0.00 0.00 2.87
291 296 5.508224 CCTTTTGAAACTTAATTAGCTCGCG 59.492 40.000 0.00 0.00 0.00 5.87
293 298 6.305638 GTGCCTTTTGAAACTTAATTAGCTCG 59.694 38.462 0.00 0.00 0.00 5.03
294 299 7.145323 TGTGCCTTTTGAAACTTAATTAGCTC 58.855 34.615 0.00 0.00 0.00 4.09
295 300 7.049799 TGTGCCTTTTGAAACTTAATTAGCT 57.950 32.000 0.00 0.00 0.00 3.32
296 301 7.889589 ATGTGCCTTTTGAAACTTAATTAGC 57.110 32.000 0.00 0.00 0.00 3.09
301 306 9.877178 TTTTCTAATGTGCCTTTTGAAACTTAA 57.123 25.926 8.58 0.00 31.03 1.85
308 313 8.934825 GCATAATTTTTCTAATGTGCCTTTTGA 58.065 29.630 0.00 0.00 0.00 2.69
363 368 8.474025 CAATAGTTGATTAATTGCCAGGGTTAA 58.526 33.333 0.00 0.00 0.00 2.01
373 378 8.203937 TGTACCCGACAATAGTTGATTAATTG 57.796 34.615 0.00 0.00 34.15 2.32
392 397 3.740115 AGTGTGATGACAGTTTGTACCC 58.260 45.455 0.00 0.00 31.10 3.69
427 432 5.470098 GTCTGACTTGGAGCTCATTGTTTAA 59.530 40.000 17.19 0.00 0.00 1.52
457 462 3.243336 ACGATCAAGTACAACGAAGAGC 58.757 45.455 0.00 0.00 0.00 4.09
458 463 4.323868 GGAACGATCAAGTACAACGAAGAG 59.676 45.833 0.00 0.00 0.00 2.85
563 572 0.326264 AAGCCGCCATTTCTCTGACT 59.674 50.000 0.00 0.00 0.00 3.41
679 688 2.815211 CCAGCAGCATGTACGCGT 60.815 61.111 19.17 19.17 39.31 6.01
798 807 1.296715 GGTGCACGAAGGACAGGAT 59.703 57.895 11.45 0.00 40.89 3.24
916 925 1.140161 ACGAATGCATGCATGGCAC 59.860 52.632 32.79 21.38 45.23 5.01
933 942 2.048127 GCGACAGTCCCCAGACAC 60.048 66.667 0.00 0.00 46.15 3.67
953 963 7.979537 ACCAGAAAGCGAAAAAGAAAGTTAAAT 59.020 29.630 0.00 0.00 0.00 1.40
1033 3607 3.414700 GGCGGTCACGAAGCAGTG 61.415 66.667 0.00 1.25 44.60 3.66
1034 3608 4.681978 GGGCGGTCACGAAGCAGT 62.682 66.667 0.00 0.00 44.60 4.40
1045 3619 3.717294 GACCACCATGAGGGCGGT 61.717 66.667 0.00 0.00 44.79 5.68
1094 3671 3.695830 AGTGATTAACCTCTTTGCGGA 57.304 42.857 0.00 0.00 0.00 5.54
1153 3735 4.084507 CGACAAAATTGCTTCATCGTCTC 58.915 43.478 0.00 0.00 0.00 3.36
1518 4120 8.330466 ACCAACGAGACATACAATGATAAAAA 57.670 30.769 0.00 0.00 0.00 1.94
1633 4247 8.722480 TCATGTCCATCTAGTCAATAAACAAG 57.278 34.615 0.00 0.00 0.00 3.16
1642 4256 4.022849 CGCATACTCATGTCCATCTAGTCA 60.023 45.833 0.00 0.00 34.40 3.41
1745 4366 9.077885 GATGAAATTAATGTGGGGCTAAATAGA 57.922 33.333 0.00 0.00 0.00 1.98
1788 4409 7.726033 TTGTTGTGGGGCTAAATTAATGTAT 57.274 32.000 0.00 0.00 0.00 2.29
1810 4431 5.410746 AGCTCATCAAATAGACGGCATATTG 59.589 40.000 0.00 0.00 0.00 1.90
1812 4433 5.157940 AGCTCATCAAATAGACGGCATAT 57.842 39.130 0.00 0.00 0.00 1.78
1816 4437 4.372656 ACTTAGCTCATCAAATAGACGGC 58.627 43.478 0.00 0.00 0.00 5.68
1817 4438 5.631512 GCTACTTAGCTCATCAAATAGACGG 59.368 44.000 0.00 0.00 45.62 4.79
1819 4440 6.439599 TCGCTACTTAGCTCATCAAATAGAC 58.560 40.000 6.68 0.00 46.85 2.59
1820 4441 6.635030 TCGCTACTTAGCTCATCAAATAGA 57.365 37.500 6.68 0.00 46.85 1.98
1821 4442 6.144724 GGTTCGCTACTTAGCTCATCAAATAG 59.855 42.308 6.68 0.00 46.85 1.73
1822 4443 5.983720 GGTTCGCTACTTAGCTCATCAAATA 59.016 40.000 6.68 0.00 46.85 1.40
1823 4444 4.811557 GGTTCGCTACTTAGCTCATCAAAT 59.188 41.667 6.68 0.00 46.85 2.32
1824 4445 4.081642 AGGTTCGCTACTTAGCTCATCAAA 60.082 41.667 6.68 0.00 46.85 2.69
1825 4446 3.447586 AGGTTCGCTACTTAGCTCATCAA 59.552 43.478 6.68 0.00 46.85 2.57
1826 4447 3.024547 AGGTTCGCTACTTAGCTCATCA 58.975 45.455 6.68 0.00 46.85 3.07
1827 4448 3.719173 AGGTTCGCTACTTAGCTCATC 57.281 47.619 6.68 0.00 46.85 2.92
1828 4449 3.952323 TGTAGGTTCGCTACTTAGCTCAT 59.048 43.478 6.68 0.00 46.85 2.90
1829 4450 3.349927 TGTAGGTTCGCTACTTAGCTCA 58.650 45.455 6.68 0.00 46.85 4.26
1830 4451 4.276431 AGATGTAGGTTCGCTACTTAGCTC 59.724 45.833 6.68 0.00 46.85 4.09
1831 4452 4.208746 AGATGTAGGTTCGCTACTTAGCT 58.791 43.478 6.68 0.00 46.85 3.32
1832 4453 4.571372 AGATGTAGGTTCGCTACTTAGC 57.429 45.455 0.00 0.00 45.62 3.09
1833 4454 6.930164 TCTCTAGATGTAGGTTCGCTACTTAG 59.070 42.308 0.00 0.00 0.00 2.18
1834 4455 6.705381 GTCTCTAGATGTAGGTTCGCTACTTA 59.295 42.308 0.00 0.00 0.00 2.24
1835 4456 5.528320 GTCTCTAGATGTAGGTTCGCTACTT 59.472 44.000 0.00 0.00 0.00 2.24
1836 4457 5.058490 GTCTCTAGATGTAGGTTCGCTACT 58.942 45.833 0.00 0.00 0.00 2.57
1837 4458 4.213906 GGTCTCTAGATGTAGGTTCGCTAC 59.786 50.000 0.00 0.00 0.00 3.58
1838 4459 4.141551 TGGTCTCTAGATGTAGGTTCGCTA 60.142 45.833 0.00 0.00 0.00 4.26
1839 4460 3.215975 GGTCTCTAGATGTAGGTTCGCT 58.784 50.000 0.00 0.00 0.00 4.93
1840 4461 2.950309 TGGTCTCTAGATGTAGGTTCGC 59.050 50.000 0.00 0.00 0.00 4.70
1841 4462 5.341617 GTTTGGTCTCTAGATGTAGGTTCG 58.658 45.833 0.00 0.00 0.00 3.95
1842 4463 5.341617 CGTTTGGTCTCTAGATGTAGGTTC 58.658 45.833 0.00 0.00 0.00 3.62
1843 4464 4.381718 GCGTTTGGTCTCTAGATGTAGGTT 60.382 45.833 0.00 0.00 0.00 3.50
1844 4465 3.130693 GCGTTTGGTCTCTAGATGTAGGT 59.869 47.826 0.00 0.00 0.00 3.08
1845 4466 3.707793 GCGTTTGGTCTCTAGATGTAGG 58.292 50.000 0.00 0.00 0.00 3.18
1846 4467 3.364062 CGCGTTTGGTCTCTAGATGTAG 58.636 50.000 0.00 0.00 0.00 2.74
1847 4468 2.479049 GCGCGTTTGGTCTCTAGATGTA 60.479 50.000 8.43 0.00 0.00 2.29
1848 4469 1.736032 GCGCGTTTGGTCTCTAGATGT 60.736 52.381 8.43 0.00 0.00 3.06
1849 4470 0.924090 GCGCGTTTGGTCTCTAGATG 59.076 55.000 8.43 0.00 0.00 2.90
1850 4471 0.530744 TGCGCGTTTGGTCTCTAGAT 59.469 50.000 8.43 0.00 0.00 1.98
1851 4472 0.388134 GTGCGCGTTTGGTCTCTAGA 60.388 55.000 8.43 0.00 0.00 2.43
1852 4473 1.352156 GGTGCGCGTTTGGTCTCTAG 61.352 60.000 8.43 0.00 0.00 2.43
1853 4474 1.373748 GGTGCGCGTTTGGTCTCTA 60.374 57.895 8.43 0.00 0.00 2.43
1854 4475 2.665185 GGTGCGCGTTTGGTCTCT 60.665 61.111 8.43 0.00 0.00 3.10
1855 4476 2.970324 TGGTGCGCGTTTGGTCTC 60.970 61.111 8.43 0.00 0.00 3.36
1856 4477 3.276846 GTGGTGCGCGTTTGGTCT 61.277 61.111 8.43 0.00 0.00 3.85
1857 4478 4.322385 GGTGGTGCGCGTTTGGTC 62.322 66.667 8.43 0.00 0.00 4.02
1874 4495 1.650536 CGACTTACTACCGCGAGCG 60.651 63.158 8.23 10.86 39.44 5.03
1875 4496 1.298190 CCGACTTACTACCGCGAGC 60.298 63.158 8.23 0.00 0.00 5.03
1876 4497 1.298190 GCCGACTTACTACCGCGAG 60.298 63.158 8.23 0.00 0.00 5.03
1877 4498 2.764314 GGCCGACTTACTACCGCGA 61.764 63.158 8.23 0.00 0.00 5.87
1878 4499 2.278401 GGCCGACTTACTACCGCG 60.278 66.667 0.00 0.00 0.00 6.46
1879 4500 0.179092 ATTGGCCGACTTACTACCGC 60.179 55.000 0.00 0.00 0.00 5.68
1880 4501 2.304751 AATTGGCCGACTTACTACCG 57.695 50.000 0.00 0.00 0.00 4.02
1881 4502 2.606272 CGAAATTGGCCGACTTACTACC 59.394 50.000 0.00 0.00 0.00 3.18
1882 4503 3.256558 ACGAAATTGGCCGACTTACTAC 58.743 45.455 0.00 0.00 0.00 2.73
1883 4504 3.194116 AGACGAAATTGGCCGACTTACTA 59.806 43.478 0.00 0.00 0.00 1.82
1884 4505 2.028385 AGACGAAATTGGCCGACTTACT 60.028 45.455 0.00 0.00 0.00 2.24
1885 4506 2.093783 CAGACGAAATTGGCCGACTTAC 59.906 50.000 0.00 0.00 0.00 2.34
1886 4507 2.289195 ACAGACGAAATTGGCCGACTTA 60.289 45.455 0.00 0.00 0.00 2.24
1887 4508 1.156736 CAGACGAAATTGGCCGACTT 58.843 50.000 0.00 0.00 0.00 3.01
1888 4509 0.034896 ACAGACGAAATTGGCCGACT 59.965 50.000 0.00 0.00 0.00 4.18
1889 4510 0.872388 AACAGACGAAATTGGCCGAC 59.128 50.000 0.00 0.00 0.00 4.79
1890 4511 1.153353 GAACAGACGAAATTGGCCGA 58.847 50.000 0.00 0.00 0.00 5.54
1891 4512 1.156736 AGAACAGACGAAATTGGCCG 58.843 50.000 0.00 0.00 0.00 6.13
1892 4513 3.065371 CCATAGAACAGACGAAATTGGCC 59.935 47.826 0.00 0.00 0.00 5.36
1893 4514 3.689649 ACCATAGAACAGACGAAATTGGC 59.310 43.478 0.00 0.00 0.00 4.52
1894 4515 5.178797 AGACCATAGAACAGACGAAATTGG 58.821 41.667 0.00 0.00 0.00 3.16
1895 4516 6.727824 AAGACCATAGAACAGACGAAATTG 57.272 37.500 0.00 0.00 0.00 2.32
1896 4517 7.661847 AGAAAAGACCATAGAACAGACGAAATT 59.338 33.333 0.00 0.00 0.00 1.82
1897 4518 7.162082 AGAAAAGACCATAGAACAGACGAAAT 58.838 34.615 0.00 0.00 0.00 2.17
1898 4519 6.522054 AGAAAAGACCATAGAACAGACGAAA 58.478 36.000 0.00 0.00 0.00 3.46
1899 4520 6.097915 AGAAAAGACCATAGAACAGACGAA 57.902 37.500 0.00 0.00 0.00 3.85
1900 4521 5.723672 AGAAAAGACCATAGAACAGACGA 57.276 39.130 0.00 0.00 0.00 4.20
1901 4522 6.347725 CCAAAGAAAAGACCATAGAACAGACG 60.348 42.308 0.00 0.00 0.00 4.18
1902 4523 6.486993 ACCAAAGAAAAGACCATAGAACAGAC 59.513 38.462 0.00 0.00 0.00 3.51
1903 4524 6.601332 ACCAAAGAAAAGACCATAGAACAGA 58.399 36.000 0.00 0.00 0.00 3.41
1904 4525 6.884280 ACCAAAGAAAAGACCATAGAACAG 57.116 37.500 0.00 0.00 0.00 3.16
1905 4526 7.654022 AAACCAAAGAAAAGACCATAGAACA 57.346 32.000 0.00 0.00 0.00 3.18
1906 4527 7.652105 GGAAAACCAAAGAAAAGACCATAGAAC 59.348 37.037 0.00 0.00 0.00 3.01
1907 4528 7.343316 TGGAAAACCAAAGAAAAGACCATAGAA 59.657 33.333 0.00 0.00 0.00 2.10
1908 4529 6.836527 TGGAAAACCAAAGAAAAGACCATAGA 59.163 34.615 0.00 0.00 0.00 1.98
1909 4530 7.049799 TGGAAAACCAAAGAAAAGACCATAG 57.950 36.000 0.00 0.00 0.00 2.23
1910 4531 7.269316 GTTGGAAAACCAAAGAAAAGACCATA 58.731 34.615 3.20 0.00 0.00 2.74
1911 4532 5.948742 TGGAAAACCAAAGAAAAGACCAT 57.051 34.783 0.00 0.00 0.00 3.55
1912 4533 5.483811 GTTGGAAAACCAAAGAAAAGACCA 58.516 37.500 3.20 0.00 0.00 4.02
1913 4534 4.565166 CGTTGGAAAACCAAAGAAAAGACC 59.435 41.667 8.72 0.00 32.47 3.85
1914 4535 4.565166 CCGTTGGAAAACCAAAGAAAAGAC 59.435 41.667 14.34 0.00 32.47 3.01
1915 4536 4.221041 ACCGTTGGAAAACCAAAGAAAAGA 59.779 37.500 14.34 0.00 32.47 2.52
1916 4537 4.500127 ACCGTTGGAAAACCAAAGAAAAG 58.500 39.130 14.34 3.09 32.47 2.27
1917 4538 4.538746 ACCGTTGGAAAACCAAAGAAAA 57.461 36.364 14.34 0.00 32.47 2.29
1918 4539 4.538746 AACCGTTGGAAAACCAAAGAAA 57.461 36.364 14.34 0.00 32.47 2.52
1919 4540 4.496360 GAAACCGTTGGAAAACCAAAGAA 58.504 39.130 14.34 0.00 32.47 2.52
1920 4541 3.119065 GGAAACCGTTGGAAAACCAAAGA 60.119 43.478 14.34 0.00 32.47 2.52
1921 4542 3.118920 AGGAAACCGTTGGAAAACCAAAG 60.119 43.478 3.20 5.71 0.00 2.77
1922 4543 2.832733 AGGAAACCGTTGGAAAACCAAA 59.167 40.909 3.20 0.00 0.00 3.28
1923 4544 2.427812 GAGGAAACCGTTGGAAAACCAA 59.572 45.455 0.00 0.00 0.00 3.67
1924 4545 2.025898 GAGGAAACCGTTGGAAAACCA 58.974 47.619 0.00 0.00 0.00 3.67
1925 4546 2.025898 TGAGGAAACCGTTGGAAAACC 58.974 47.619 0.00 0.00 0.00 3.27
1926 4547 3.441163 GTTGAGGAAACCGTTGGAAAAC 58.559 45.455 0.00 0.00 32.13 2.43
1927 4548 3.786516 GTTGAGGAAACCGTTGGAAAA 57.213 42.857 0.00 0.00 32.13 2.29
1937 4558 3.068165 CCAAAAGGTCTGGTTGAGGAAAC 59.932 47.826 0.00 0.00 38.12 2.78
1938 4559 3.295973 CCAAAAGGTCTGGTTGAGGAAA 58.704 45.455 0.00 0.00 0.00 3.13
1939 4560 2.243736 ACCAAAAGGTCTGGTTGAGGAA 59.756 45.455 0.00 0.00 45.13 3.36
1940 4561 1.850345 ACCAAAAGGTCTGGTTGAGGA 59.150 47.619 0.00 0.00 45.13 3.71
1941 4562 2.364972 ACCAAAAGGTCTGGTTGAGG 57.635 50.000 0.00 0.00 45.13 3.86
1961 4582 9.508642 AAAACCCAAAGAAAGAACACATAAAAA 57.491 25.926 0.00 0.00 0.00 1.94
1962 4583 9.157104 GAAAACCCAAAGAAAGAACACATAAAA 57.843 29.630 0.00 0.00 0.00 1.52
1963 4584 8.536175 AGAAAACCCAAAGAAAGAACACATAAA 58.464 29.630 0.00 0.00 0.00 1.40
1964 4585 8.073467 AGAAAACCCAAAGAAAGAACACATAA 57.927 30.769 0.00 0.00 0.00 1.90
1965 4586 7.468084 CGAGAAAACCCAAAGAAAGAACACATA 60.468 37.037 0.00 0.00 0.00 2.29
1966 4587 6.544928 AGAAAACCCAAAGAAAGAACACAT 57.455 33.333 0.00 0.00 0.00 3.21
1967 4588 5.392595 CGAGAAAACCCAAAGAAAGAACACA 60.393 40.000 0.00 0.00 0.00 3.72
1968 4589 5.034797 CGAGAAAACCCAAAGAAAGAACAC 58.965 41.667 0.00 0.00 0.00 3.32
1969 4590 4.944930 TCGAGAAAACCCAAAGAAAGAACA 59.055 37.500 0.00 0.00 0.00 3.18
1970 4591 5.494632 TCGAGAAAACCCAAAGAAAGAAC 57.505 39.130 0.00 0.00 0.00 3.01
1971 4592 6.709018 AATCGAGAAAACCCAAAGAAAGAA 57.291 33.333 0.00 0.00 0.00 2.52
1972 4593 6.709018 AAATCGAGAAAACCCAAAGAAAGA 57.291 33.333 0.00 0.00 0.00 2.52
1973 4594 7.621102 CAAAAATCGAGAAAACCCAAAGAAAG 58.379 34.615 0.00 0.00 0.00 2.62
1974 4595 6.036626 GCAAAAATCGAGAAAACCCAAAGAAA 59.963 34.615 0.00 0.00 0.00 2.52
1975 4596 5.522097 GCAAAAATCGAGAAAACCCAAAGAA 59.478 36.000 0.00 0.00 0.00 2.52
1976 4597 5.047188 GCAAAAATCGAGAAAACCCAAAGA 58.953 37.500 0.00 0.00 0.00 2.52
1977 4598 5.049828 AGCAAAAATCGAGAAAACCCAAAG 58.950 37.500 0.00 0.00 0.00 2.77
1978 4599 5.017294 AGCAAAAATCGAGAAAACCCAAA 57.983 34.783 0.00 0.00 0.00 3.28
1979 4600 4.664150 AGCAAAAATCGAGAAAACCCAA 57.336 36.364 0.00 0.00 0.00 4.12
1980 4601 4.664150 AAGCAAAAATCGAGAAAACCCA 57.336 36.364 0.00 0.00 0.00 4.51
1981 4602 5.984233 AAAAGCAAAAATCGAGAAAACCC 57.016 34.783 0.00 0.00 0.00 4.11
1982 4603 6.036626 TGGAAAAAGCAAAAATCGAGAAAACC 59.963 34.615 0.00 0.00 0.00 3.27
1983 4604 6.999456 TGGAAAAAGCAAAAATCGAGAAAAC 58.001 32.000 0.00 0.00 0.00 2.43
1984 4605 6.816140 ACTGGAAAAAGCAAAAATCGAGAAAA 59.184 30.769 0.00 0.00 0.00 2.29
1985 4606 6.337356 ACTGGAAAAAGCAAAAATCGAGAAA 58.663 32.000 0.00 0.00 0.00 2.52
1986 4607 5.901552 ACTGGAAAAAGCAAAAATCGAGAA 58.098 33.333 0.00 0.00 0.00 2.87
1987 4608 5.514274 ACTGGAAAAAGCAAAAATCGAGA 57.486 34.783 0.00 0.00 0.00 4.04
1988 4609 6.292328 GGAAACTGGAAAAAGCAAAAATCGAG 60.292 38.462 0.00 0.00 0.00 4.04
1989 4610 5.522097 GGAAACTGGAAAAAGCAAAAATCGA 59.478 36.000 0.00 0.00 0.00 3.59
1990 4611 5.523552 AGGAAACTGGAAAAAGCAAAAATCG 59.476 36.000 0.00 0.00 41.13 3.34
1991 4612 6.763135 AGAGGAAACTGGAAAAAGCAAAAATC 59.237 34.615 0.00 0.00 44.43 2.17
1992 4613 6.653020 AGAGGAAACTGGAAAAAGCAAAAAT 58.347 32.000 0.00 0.00 44.43 1.82
1993 4614 6.048732 AGAGGAAACTGGAAAAAGCAAAAA 57.951 33.333 0.00 0.00 44.43 1.94
1994 4615 5.675684 AGAGGAAACTGGAAAAAGCAAAA 57.324 34.783 0.00 0.00 44.43 2.44
1995 4616 5.422012 AGAAGAGGAAACTGGAAAAAGCAAA 59.578 36.000 0.00 0.00 44.43 3.68
1996 4617 4.956075 AGAAGAGGAAACTGGAAAAAGCAA 59.044 37.500 0.00 0.00 44.43 3.91
1997 4618 4.536765 AGAAGAGGAAACTGGAAAAAGCA 58.463 39.130 0.00 0.00 44.43 3.91
1998 4619 5.521906 AAGAAGAGGAAACTGGAAAAAGC 57.478 39.130 0.00 0.00 44.43 3.51
1999 4620 7.776107 AGAAAAGAAGAGGAAACTGGAAAAAG 58.224 34.615 0.00 0.00 44.43 2.27
2000 4621 7.718334 AGAAAAGAAGAGGAAACTGGAAAAA 57.282 32.000 0.00 0.00 44.43 1.94
2001 4622 7.718334 AAGAAAAGAAGAGGAAACTGGAAAA 57.282 32.000 0.00 0.00 44.43 2.29
2002 4623 7.718334 AAAGAAAAGAAGAGGAAACTGGAAA 57.282 32.000 0.00 0.00 44.43 3.13
2003 4624 7.718334 AAAAGAAAAGAAGAGGAAACTGGAA 57.282 32.000 0.00 0.00 44.43 3.53
2004 4625 7.718334 AAAAAGAAAAGAAGAGGAAACTGGA 57.282 32.000 0.00 0.00 44.43 3.86
2077 4698 9.076781 TGTTCTCATATTTCAAAAGGTTCATGA 57.923 29.630 0.00 0.00 0.00 3.07
2078 4699 9.695526 TTGTTCTCATATTTCAAAAGGTTCATG 57.304 29.630 0.00 0.00 0.00 3.07
2096 4717 9.528018 GACCATGAAGTTTAAAAATTGTTCTCA 57.472 29.630 0.00 0.00 0.00 3.27
2097 4718 8.690840 CGACCATGAAGTTTAAAAATTGTTCTC 58.309 33.333 0.00 0.00 0.00 2.87
2098 4719 8.194769 ACGACCATGAAGTTTAAAAATTGTTCT 58.805 29.630 0.00 0.00 0.00 3.01
2099 4720 8.347729 ACGACCATGAAGTTTAAAAATTGTTC 57.652 30.769 0.00 0.00 0.00 3.18
2100 4721 9.974980 ATACGACCATGAAGTTTAAAAATTGTT 57.025 25.926 0.00 0.00 0.00 2.83
2101 4722 9.974980 AATACGACCATGAAGTTTAAAAATTGT 57.025 25.926 0.00 0.00 0.00 2.71
2110 4731 8.977505 CAATTTGAAAATACGACCATGAAGTTT 58.022 29.630 0.00 0.00 0.00 2.66
2111 4732 8.356657 TCAATTTGAAAATACGACCATGAAGTT 58.643 29.630 0.00 0.00 0.00 2.66
2112 4733 7.881142 TCAATTTGAAAATACGACCATGAAGT 58.119 30.769 0.00 0.00 0.00 3.01
2113 4734 8.236586 TCTCAATTTGAAAATACGACCATGAAG 58.763 33.333 0.01 0.00 0.00 3.02
2114 4735 8.105097 TCTCAATTTGAAAATACGACCATGAA 57.895 30.769 0.01 0.00 0.00 2.57
2115 4736 7.680442 TCTCAATTTGAAAATACGACCATGA 57.320 32.000 0.01 0.00 0.00 3.07
2116 4737 7.807433 TGTTCTCAATTTGAAAATACGACCATG 59.193 33.333 0.01 0.00 0.00 3.66
2117 4738 7.881142 TGTTCTCAATTTGAAAATACGACCAT 58.119 30.769 0.01 0.00 0.00 3.55
2118 4739 7.265647 TGTTCTCAATTTGAAAATACGACCA 57.734 32.000 0.01 0.00 0.00 4.02
2119 4740 8.742554 AATGTTCTCAATTTGAAAATACGACC 57.257 30.769 0.01 0.00 0.00 4.79
2177 4798 9.579768 CACGGGTTAAAATTATTCATGATTTCA 57.420 29.630 0.00 0.00 0.00 2.69
2178 4799 9.796120 TCACGGGTTAAAATTATTCATGATTTC 57.204 29.630 0.00 0.00 0.00 2.17
2180 4801 9.581099 GTTCACGGGTTAAAATTATTCATGATT 57.419 29.630 0.00 0.00 0.00 2.57
2181 4802 8.744652 TGTTCACGGGTTAAAATTATTCATGAT 58.255 29.630 0.00 0.00 0.00 2.45
2182 4803 8.112016 TGTTCACGGGTTAAAATTATTCATGA 57.888 30.769 0.00 0.00 0.00 3.07
2183 4804 8.925161 ATGTTCACGGGTTAAAATTATTCATG 57.075 30.769 0.00 0.00 0.00 3.07
2184 4805 9.936759 AAATGTTCACGGGTTAAAATTATTCAT 57.063 25.926 0.00 0.00 0.00 2.57
2190 4811 9.765795 TTCAATAAATGTTCACGGGTTAAAATT 57.234 25.926 0.00 0.00 0.00 1.82
2191 4812 9.765795 TTTCAATAAATGTTCACGGGTTAAAAT 57.234 25.926 0.00 0.00 0.00 1.82
2192 4813 9.765795 ATTTCAATAAATGTTCACGGGTTAAAA 57.234 25.926 0.00 0.00 33.97 1.52
2193 4814 9.413048 GATTTCAATAAATGTTCACGGGTTAAA 57.587 29.630 0.00 0.00 35.41 1.52
2194 4815 8.030106 GGATTTCAATAAATGTTCACGGGTTAA 58.970 33.333 0.00 0.00 35.41 2.01
2195 4816 7.176865 TGGATTTCAATAAATGTTCACGGGTTA 59.823 33.333 0.00 0.00 35.41 2.85
2196 4817 6.015010 TGGATTTCAATAAATGTTCACGGGTT 60.015 34.615 0.00 0.00 35.41 4.11
2197 4818 5.478679 TGGATTTCAATAAATGTTCACGGGT 59.521 36.000 0.00 0.00 35.41 5.28
2198 4819 5.960113 TGGATTTCAATAAATGTTCACGGG 58.040 37.500 0.00 0.00 35.41 5.28
2199 4820 6.620678 ACTGGATTTCAATAAATGTTCACGG 58.379 36.000 0.00 0.00 35.41 4.94
2200 4821 9.787532 ATTACTGGATTTCAATAAATGTTCACG 57.212 29.630 0.00 0.00 35.41 4.35
2252 4873 9.230122 TGAAGACTTAAACAATGCTCATGAATA 57.770 29.630 0.00 0.00 0.00 1.75
2253 4874 8.114331 TGAAGACTTAAACAATGCTCATGAAT 57.886 30.769 0.00 0.00 0.00 2.57
2254 4875 7.509141 TGAAGACTTAAACAATGCTCATGAA 57.491 32.000 0.00 0.00 0.00 2.57
2255 4876 7.013178 TGTTGAAGACTTAAACAATGCTCATGA 59.987 33.333 14.72 0.00 31.16 3.07
2256 4877 7.140705 TGTTGAAGACTTAAACAATGCTCATG 58.859 34.615 14.72 0.00 31.16 3.07
2257 4878 7.275888 TGTTGAAGACTTAAACAATGCTCAT 57.724 32.000 14.72 0.00 31.16 2.90
2258 4879 6.691754 TGTTGAAGACTTAAACAATGCTCA 57.308 33.333 14.72 0.00 31.16 4.26
2259 4880 9.846248 ATAATGTTGAAGACTTAAACAATGCTC 57.154 29.630 19.83 0.00 37.36 4.26
2270 4891 9.613428 TCGGATATCAAATAATGTTGAAGACTT 57.387 29.630 4.83 0.00 40.76 3.01
2271 4892 9.265901 CTCGGATATCAAATAATGTTGAAGACT 57.734 33.333 4.83 0.00 40.76 3.24
2272 4893 9.261180 TCTCGGATATCAAATAATGTTGAAGAC 57.739 33.333 4.83 0.00 40.76 3.01
2273 4894 9.830975 TTCTCGGATATCAAATAATGTTGAAGA 57.169 29.630 4.83 0.00 40.76 2.87
2274 4895 9.869844 GTTCTCGGATATCAAATAATGTTGAAG 57.130 33.333 4.83 0.00 40.76 3.02
2275 4896 9.389755 TGTTCTCGGATATCAAATAATGTTGAA 57.610 29.630 4.83 0.00 40.76 2.69
2276 4897 8.956533 TGTTCTCGGATATCAAATAATGTTGA 57.043 30.769 4.83 0.00 41.59 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.