Multiple sequence alignment - TraesCS3A01G065800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G065800 chr3A 100.000 2591 0 0 1 2591 38629697 38627107 0.000000e+00 4785
1 TraesCS3A01G065800 chr3A 99.405 1176 7 0 1416 2591 38637949 38636774 0.000000e+00 2134
2 TraesCS3A01G065800 chr3A 80.144 831 90 28 820 1597 38658259 38657451 3.770000e-153 551
3 TraesCS3A01G065800 chr3B 88.531 1334 81 22 829 2118 50034360 50033055 0.000000e+00 1550
4 TraesCS3A01G065800 chr3B 80.120 996 114 39 824 1757 50039134 50038161 0.000000e+00 665
5 TraesCS3A01G065800 chr3B 84.685 666 71 16 988 1623 49863317 49863981 1.010000e-178 636
6 TraesCS3A01G065800 chr3B 86.726 452 24 6 375 811 50035028 50034598 1.090000e-128 470
7 TraesCS3A01G065800 chr3B 74.496 694 136 19 927 1593 27103769 27104448 1.980000e-66 263
8 TraesCS3A01G065800 chr3B 70.787 712 160 27 921 1595 14312137 14312837 4.530000e-23 119
9 TraesCS3A01G065800 chr7D 81.211 644 86 16 871 1480 151315365 151316007 1.080000e-133 486
10 TraesCS3A01G065800 chr3D 79.545 264 37 11 973 1222 6154450 6154710 3.430000e-39 172
11 TraesCS3A01G065800 chr2B 80.892 157 22 6 547 697 801081667 801081513 1.630000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G065800 chr3A 38627107 38629697 2590 True 4785 4785 100.000000 1 2591 1 chr3A.!!$R1 2590
1 TraesCS3A01G065800 chr3A 38636774 38637949 1175 True 2134 2134 99.405000 1416 2591 1 chr3A.!!$R2 1175
2 TraesCS3A01G065800 chr3A 38657451 38658259 808 True 551 551 80.144000 820 1597 1 chr3A.!!$R3 777
3 TraesCS3A01G065800 chr3B 50033055 50039134 6079 True 895 1550 85.125667 375 2118 3 chr3B.!!$R1 1743
4 TraesCS3A01G065800 chr3B 49863317 49863981 664 False 636 636 84.685000 988 1623 1 chr3B.!!$F3 635
5 TraesCS3A01G065800 chr3B 27103769 27104448 679 False 263 263 74.496000 927 1593 1 chr3B.!!$F2 666
6 TraesCS3A01G065800 chr7D 151315365 151316007 642 False 486 486 81.211000 871 1480 1 chr7D.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 915 0.030504 CAAGCATTTCGTGTGCCACA 59.969 50.0 0.0 0.0 43.5 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2318 7209 4.094442 CCGGCTTAATGTTTTAGTCACTCC 59.906 45.833 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.918712 AAATACATCGAGGCCTCTGG 57.081 50.000 29.73 20.13 0.00 3.86
20 21 2.088104 AATACATCGAGGCCTCTGGA 57.912 50.000 29.73 19.63 32.40 3.86
21 22 1.333177 ATACATCGAGGCCTCTGGAC 58.667 55.000 29.73 4.60 30.64 4.02
22 23 0.755698 TACATCGAGGCCTCTGGACC 60.756 60.000 29.73 3.78 30.64 4.46
23 24 2.060383 CATCGAGGCCTCTGGACCA 61.060 63.158 29.73 8.43 30.64 4.02
24 25 2.060980 ATCGAGGCCTCTGGACCAC 61.061 63.158 29.73 2.16 30.64 4.16
25 26 2.522198 ATCGAGGCCTCTGGACCACT 62.522 60.000 29.73 3.57 30.64 4.00
26 27 1.379977 CGAGGCCTCTGGACCACTA 60.380 63.158 29.73 0.00 0.00 2.74
27 28 0.757188 CGAGGCCTCTGGACCACTAT 60.757 60.000 29.73 0.00 0.00 2.12
28 29 1.501582 GAGGCCTCTGGACCACTATT 58.498 55.000 26.25 0.00 0.00 1.73
29 30 1.139853 GAGGCCTCTGGACCACTATTG 59.860 57.143 26.25 0.00 0.00 1.90
30 31 0.464554 GGCCTCTGGACCACTATTGC 60.465 60.000 0.00 0.00 0.00 3.56
31 32 0.464554 GCCTCTGGACCACTATTGCC 60.465 60.000 0.00 0.00 0.00 4.52
32 33 0.179073 CCTCTGGACCACTATTGCCG 60.179 60.000 0.00 0.00 0.00 5.69
33 34 0.179073 CTCTGGACCACTATTGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
34 35 1.819632 CTGGACCACTATTGCCGGC 60.820 63.158 22.73 22.73 0.00 6.13
35 36 2.270850 GGACCACTATTGCCGGCA 59.729 61.111 29.03 29.03 0.00 5.69
36 37 1.819632 GGACCACTATTGCCGGCAG 60.820 63.158 30.75 20.97 0.00 4.85
37 38 1.220749 GACCACTATTGCCGGCAGA 59.779 57.895 30.75 20.51 0.00 4.26
38 39 0.179045 GACCACTATTGCCGGCAGAT 60.179 55.000 30.75 25.43 0.00 2.90
39 40 0.179045 ACCACTATTGCCGGCAGATC 60.179 55.000 30.75 0.00 0.00 2.75
40 41 1.224069 CCACTATTGCCGGCAGATCG 61.224 60.000 30.75 21.68 0.00 3.69
41 42 0.249447 CACTATTGCCGGCAGATCGA 60.249 55.000 30.75 15.62 0.00 3.59
42 43 0.032678 ACTATTGCCGGCAGATCGAG 59.967 55.000 30.75 23.01 0.00 4.04
43 44 0.032678 CTATTGCCGGCAGATCGAGT 59.967 55.000 30.75 12.77 0.00 4.18
44 45 0.032130 TATTGCCGGCAGATCGAGTC 59.968 55.000 30.75 0.00 0.00 3.36
45 46 2.960957 ATTGCCGGCAGATCGAGTCG 62.961 60.000 30.75 6.09 0.00 4.18
47 48 4.933064 CCGGCAGATCGAGTCGCC 62.933 72.222 7.92 10.84 40.67 5.54
49 50 3.889044 GGCAGATCGAGTCGCCGA 61.889 66.667 7.92 0.00 43.16 5.54
50 51 2.652496 GCAGATCGAGTCGCCGAC 60.652 66.667 9.71 9.71 41.70 4.79
51 52 2.351322 CAGATCGAGTCGCCGACG 60.351 66.667 12.13 0.56 41.70 5.12
52 53 4.239203 AGATCGAGTCGCCGACGC 62.239 66.667 12.13 11.60 41.70 5.19
71 72 4.545706 CCGCTATTGCCGCTCCCA 62.546 66.667 0.00 0.00 35.36 4.37
72 73 2.281070 CGCTATTGCCGCTCCCAT 60.281 61.111 0.00 0.00 35.36 4.00
73 74 1.005037 CGCTATTGCCGCTCCCATA 60.005 57.895 0.00 0.00 35.36 2.74
74 75 0.391661 CGCTATTGCCGCTCCCATAT 60.392 55.000 0.00 0.00 35.36 1.78
75 76 1.373570 GCTATTGCCGCTCCCATATC 58.626 55.000 0.00 0.00 0.00 1.63
76 77 1.339055 GCTATTGCCGCTCCCATATCA 60.339 52.381 0.00 0.00 0.00 2.15
77 78 2.625737 CTATTGCCGCTCCCATATCAG 58.374 52.381 0.00 0.00 0.00 2.90
78 79 1.059098 ATTGCCGCTCCCATATCAGA 58.941 50.000 0.00 0.00 0.00 3.27
79 80 0.394192 TTGCCGCTCCCATATCAGAG 59.606 55.000 0.00 0.00 0.00 3.35
86 87 3.784511 CTCCCATATCAGAGCCACAAT 57.215 47.619 0.00 0.00 0.00 2.71
87 88 4.096190 CTCCCATATCAGAGCCACAATT 57.904 45.455 0.00 0.00 0.00 2.32
88 89 4.467769 CTCCCATATCAGAGCCACAATTT 58.532 43.478 0.00 0.00 0.00 1.82
89 90 5.624159 CTCCCATATCAGAGCCACAATTTA 58.376 41.667 0.00 0.00 0.00 1.40
90 91 6.204852 TCCCATATCAGAGCCACAATTTAT 57.795 37.500 0.00 0.00 0.00 1.40
91 92 6.005823 TCCCATATCAGAGCCACAATTTATG 58.994 40.000 0.00 0.00 0.00 1.90
92 93 6.005823 CCCATATCAGAGCCACAATTTATGA 58.994 40.000 0.00 0.00 0.00 2.15
93 94 6.072286 CCCATATCAGAGCCACAATTTATGAC 60.072 42.308 0.00 0.00 0.00 3.06
94 95 6.072286 CCATATCAGAGCCACAATTTATGACC 60.072 42.308 0.00 0.00 0.00 4.02
95 96 3.270027 TCAGAGCCACAATTTATGACCG 58.730 45.455 0.00 0.00 0.00 4.79
96 97 2.355756 CAGAGCCACAATTTATGACCGG 59.644 50.000 0.00 0.00 0.00 5.28
97 98 2.026262 AGAGCCACAATTTATGACCGGT 60.026 45.455 6.92 6.92 0.00 5.28
98 99 2.091541 AGCCACAATTTATGACCGGTG 58.908 47.619 14.63 0.00 0.00 4.94
99 100 1.134175 GCCACAATTTATGACCGGTGG 59.866 52.381 14.63 3.42 46.51 4.61
100 101 2.717390 CCACAATTTATGACCGGTGGA 58.283 47.619 14.63 0.00 46.67 4.02
101 102 2.422127 CCACAATTTATGACCGGTGGAC 59.578 50.000 14.63 0.00 46.67 4.02
102 103 3.078097 CACAATTTATGACCGGTGGACA 58.922 45.455 14.63 3.73 0.00 4.02
103 104 3.078837 ACAATTTATGACCGGTGGACAC 58.921 45.455 14.63 0.00 29.43 3.67
104 105 3.078097 CAATTTATGACCGGTGGACACA 58.922 45.455 14.63 2.75 29.43 3.72
105 106 2.932855 TTTATGACCGGTGGACACAA 57.067 45.000 14.63 0.00 29.43 3.33
106 107 3.426787 TTTATGACCGGTGGACACAAT 57.573 42.857 14.63 0.00 29.43 2.71
107 108 4.554960 TTTATGACCGGTGGACACAATA 57.445 40.909 14.63 0.00 29.43 1.90
108 109 2.691409 ATGACCGGTGGACACAATAG 57.309 50.000 14.63 0.00 29.43 1.73
109 110 1.634960 TGACCGGTGGACACAATAGA 58.365 50.000 14.63 0.00 0.00 1.98
110 111 1.548719 TGACCGGTGGACACAATAGAG 59.451 52.381 14.63 0.00 0.00 2.43
111 112 1.549170 GACCGGTGGACACAATAGAGT 59.451 52.381 14.63 0.00 0.00 3.24
112 113 1.549170 ACCGGTGGACACAATAGAGTC 59.451 52.381 6.12 0.00 35.00 3.36
113 114 1.548719 CCGGTGGACACAATAGAGTCA 59.451 52.381 4.69 0.00 37.12 3.41
114 115 2.168521 CCGGTGGACACAATAGAGTCAT 59.831 50.000 4.69 0.00 37.12 3.06
115 116 3.369471 CCGGTGGACACAATAGAGTCATT 60.369 47.826 4.69 0.00 37.12 2.57
116 117 4.253685 CGGTGGACACAATAGAGTCATTT 58.746 43.478 4.69 0.00 37.12 2.32
117 118 4.695455 CGGTGGACACAATAGAGTCATTTT 59.305 41.667 4.69 0.00 37.12 1.82
118 119 5.390885 CGGTGGACACAATAGAGTCATTTTG 60.391 44.000 4.69 0.00 37.12 2.44
119 120 5.705441 GGTGGACACAATAGAGTCATTTTGA 59.295 40.000 4.69 0.00 37.12 2.69
120 121 6.206634 GGTGGACACAATAGAGTCATTTTGAA 59.793 38.462 4.69 0.00 37.12 2.69
121 122 7.301054 GTGGACACAATAGAGTCATTTTGAAG 58.699 38.462 0.00 2.82 37.12 3.02
122 123 7.173218 GTGGACACAATAGAGTCATTTTGAAGA 59.827 37.037 0.00 0.00 37.12 2.87
123 124 7.388776 TGGACACAATAGAGTCATTTTGAAGAG 59.611 37.037 6.70 0.00 37.12 2.85
124 125 7.138692 ACACAATAGAGTCATTTTGAAGAGC 57.861 36.000 6.70 0.00 0.00 4.09
125 126 6.712095 ACACAATAGAGTCATTTTGAAGAGCA 59.288 34.615 6.70 0.00 0.00 4.26
126 127 7.229306 ACACAATAGAGTCATTTTGAAGAGCAA 59.771 33.333 6.70 0.00 33.88 3.91
127 128 7.536622 CACAATAGAGTCATTTTGAAGAGCAAC 59.463 37.037 6.70 0.00 35.91 4.17
128 129 7.446625 ACAATAGAGTCATTTTGAAGAGCAACT 59.553 33.333 6.70 0.00 35.91 3.16
129 130 7.992754 ATAGAGTCATTTTGAAGAGCAACTT 57.007 32.000 0.00 0.00 42.03 2.66
130 131 6.069684 AGAGTCATTTTGAAGAGCAACTTG 57.930 37.500 1.06 0.00 39.13 3.16
131 132 4.614946 AGTCATTTTGAAGAGCAACTTGC 58.385 39.130 5.55 5.55 45.46 4.01
171 172 8.748412 TCTACAAATCAAACAATTTCCATAGGG 58.252 33.333 0.00 0.00 0.00 3.53
172 173 7.552050 ACAAATCAAACAATTTCCATAGGGA 57.448 32.000 0.00 0.00 43.03 4.20
187 188 6.731467 TCCATAGGGAAAAACATAAGAAGCT 58.269 36.000 0.00 0.00 41.32 3.74
188 189 7.867921 TCCATAGGGAAAAACATAAGAAGCTA 58.132 34.615 0.00 0.00 41.32 3.32
189 190 7.993183 TCCATAGGGAAAAACATAAGAAGCTAG 59.007 37.037 0.00 0.00 41.32 3.42
190 191 7.993183 CCATAGGGAAAAACATAAGAAGCTAGA 59.007 37.037 0.00 0.00 35.59 2.43
191 192 9.050601 CATAGGGAAAAACATAAGAAGCTAGAG 57.949 37.037 0.00 0.00 0.00 2.43
192 193 7.021998 AGGGAAAAACATAAGAAGCTAGAGT 57.978 36.000 0.00 0.00 0.00 3.24
193 194 8.147244 AGGGAAAAACATAAGAAGCTAGAGTA 57.853 34.615 0.00 0.00 0.00 2.59
194 195 8.773216 AGGGAAAAACATAAGAAGCTAGAGTAT 58.227 33.333 0.00 0.00 0.00 2.12
204 205 9.819267 ATAAGAAGCTAGAGTATAAAACACACC 57.181 33.333 0.00 0.00 0.00 4.16
205 206 7.241042 AGAAGCTAGAGTATAAAACACACCA 57.759 36.000 0.00 0.00 0.00 4.17
206 207 7.676947 AGAAGCTAGAGTATAAAACACACCAA 58.323 34.615 0.00 0.00 0.00 3.67
207 208 8.154856 AGAAGCTAGAGTATAAAACACACCAAA 58.845 33.333 0.00 0.00 0.00 3.28
208 209 8.685838 AAGCTAGAGTATAAAACACACCAAAA 57.314 30.769 0.00 0.00 0.00 2.44
209 210 8.863872 AGCTAGAGTATAAAACACACCAAAAT 57.136 30.769 0.00 0.00 0.00 1.82
210 211 8.947115 AGCTAGAGTATAAAACACACCAAAATC 58.053 33.333 0.00 0.00 0.00 2.17
211 212 8.947115 GCTAGAGTATAAAACACACCAAAATCT 58.053 33.333 0.00 0.00 0.00 2.40
214 215 9.349713 AGAGTATAAAACACACCAAAATCTTCA 57.650 29.630 0.00 0.00 0.00 3.02
215 216 9.394477 GAGTATAAAACACACCAAAATCTTCAC 57.606 33.333 0.00 0.00 0.00 3.18
216 217 8.073768 AGTATAAAACACACCAAAATCTTCACG 58.926 33.333 0.00 0.00 0.00 4.35
217 218 4.974368 AAACACACCAAAATCTTCACGA 57.026 36.364 0.00 0.00 0.00 4.35
218 219 4.974368 AACACACCAAAATCTTCACGAA 57.026 36.364 0.00 0.00 0.00 3.85
219 220 4.974368 ACACACCAAAATCTTCACGAAA 57.026 36.364 0.00 0.00 0.00 3.46
220 221 5.514274 ACACACCAAAATCTTCACGAAAT 57.486 34.783 0.00 0.00 0.00 2.17
221 222 5.901552 ACACACCAAAATCTTCACGAAATT 58.098 33.333 0.00 0.00 0.00 1.82
222 223 5.977129 ACACACCAAAATCTTCACGAAATTC 59.023 36.000 0.00 0.00 0.00 2.17
223 224 5.115472 CACACCAAAATCTTCACGAAATTCG 59.885 40.000 14.35 14.35 46.93 3.34
237 238 5.570262 CGAAATTCGTCTGTAACAACAGA 57.430 39.130 7.29 4.16 43.68 3.41
238 239 5.969741 CGAAATTCGTCTGTAACAACAGAA 58.030 37.500 7.29 1.46 46.81 3.02
239 240 6.415702 CGAAATTCGTCTGTAACAACAGAAA 58.584 36.000 7.29 2.98 46.81 2.52
240 241 6.570058 CGAAATTCGTCTGTAACAACAGAAAG 59.430 38.462 7.29 7.62 46.81 2.62
241 242 7.516155 CGAAATTCGTCTGTAACAACAGAAAGA 60.516 37.037 7.29 9.56 46.81 2.52
242 243 7.548196 AATTCGTCTGTAACAACAGAAAGAA 57.452 32.000 20.20 20.20 46.81 2.52
243 244 7.730364 ATTCGTCTGTAACAACAGAAAGAAT 57.270 32.000 21.80 21.80 46.81 2.40
244 245 6.525121 TCGTCTGTAACAACAGAAAGAATG 57.475 37.500 9.65 0.00 46.81 2.67
245 246 6.277605 TCGTCTGTAACAACAGAAAGAATGA 58.722 36.000 9.65 0.00 46.81 2.57
246 247 6.420903 TCGTCTGTAACAACAGAAAGAATGAG 59.579 38.462 9.65 0.00 46.81 2.90
247 248 6.366630 GTCTGTAACAACAGAAAGAATGAGC 58.633 40.000 9.65 0.00 46.81 4.26
248 249 5.177511 TCTGTAACAACAGAAAGAATGAGCG 59.822 40.000 5.78 0.00 43.03 5.03
249 250 5.053811 TGTAACAACAGAAAGAATGAGCGA 58.946 37.500 0.00 0.00 0.00 4.93
250 251 5.525745 TGTAACAACAGAAAGAATGAGCGAA 59.474 36.000 0.00 0.00 0.00 4.70
251 252 5.499139 AACAACAGAAAGAATGAGCGAAA 57.501 34.783 0.00 0.00 0.00 3.46
252 253 5.100751 ACAACAGAAAGAATGAGCGAAAG 57.899 39.130 0.00 0.00 0.00 2.62
253 254 4.023707 ACAACAGAAAGAATGAGCGAAAGG 60.024 41.667 0.00 0.00 0.00 3.11
254 255 2.485814 ACAGAAAGAATGAGCGAAAGGC 59.514 45.455 0.00 0.00 44.05 4.35
255 256 2.087646 AGAAAGAATGAGCGAAAGGCC 58.912 47.619 0.00 0.00 45.17 5.19
256 257 1.133216 GAAAGAATGAGCGAAAGGCCC 59.867 52.381 0.00 0.00 45.17 5.80
257 258 0.329596 AAGAATGAGCGAAAGGCCCT 59.670 50.000 0.00 0.00 45.17 5.19
258 259 0.329596 AGAATGAGCGAAAGGCCCTT 59.670 50.000 0.00 0.00 45.17 3.95
259 260 1.177401 GAATGAGCGAAAGGCCCTTT 58.823 50.000 8.88 8.88 45.17 3.11
260 261 2.026262 AGAATGAGCGAAAGGCCCTTTA 60.026 45.455 9.14 0.00 45.17 1.85
261 262 2.736670 ATGAGCGAAAGGCCCTTTAT 57.263 45.000 9.14 0.00 45.17 1.40
262 263 1.750193 TGAGCGAAAGGCCCTTTATG 58.250 50.000 9.14 6.15 45.17 1.90
263 264 1.280710 TGAGCGAAAGGCCCTTTATGA 59.719 47.619 9.14 0.00 45.17 2.15
264 265 2.290641 TGAGCGAAAGGCCCTTTATGAA 60.291 45.455 9.14 0.00 45.17 2.57
265 266 2.752903 GAGCGAAAGGCCCTTTATGAAA 59.247 45.455 9.14 0.00 45.17 2.69
266 267 3.161866 AGCGAAAGGCCCTTTATGAAAA 58.838 40.909 9.14 0.00 45.17 2.29
267 268 3.769300 AGCGAAAGGCCCTTTATGAAAAT 59.231 39.130 9.14 0.00 45.17 1.82
268 269 4.953579 AGCGAAAGGCCCTTTATGAAAATA 59.046 37.500 9.14 0.00 45.17 1.40
269 270 5.067805 AGCGAAAGGCCCTTTATGAAAATAG 59.932 40.000 9.14 0.00 45.17 1.73
270 271 5.281727 CGAAAGGCCCTTTATGAAAATAGC 58.718 41.667 9.14 0.00 33.49 2.97
271 272 5.163561 CGAAAGGCCCTTTATGAAAATAGCA 60.164 40.000 9.14 0.00 33.49 3.49
272 273 5.859205 AAGGCCCTTTATGAAAATAGCAG 57.141 39.130 0.00 0.00 0.00 4.24
273 274 3.638627 AGGCCCTTTATGAAAATAGCAGC 59.361 43.478 0.00 0.00 0.00 5.25
274 275 3.384467 GGCCCTTTATGAAAATAGCAGCA 59.616 43.478 0.00 0.00 0.00 4.41
275 276 4.500375 GGCCCTTTATGAAAATAGCAGCAG 60.500 45.833 0.00 0.00 0.00 4.24
276 277 4.339247 GCCCTTTATGAAAATAGCAGCAGA 59.661 41.667 0.00 0.00 0.00 4.26
277 278 5.010415 GCCCTTTATGAAAATAGCAGCAGAT 59.990 40.000 0.00 0.00 0.00 2.90
278 279 6.207417 GCCCTTTATGAAAATAGCAGCAGATA 59.793 38.462 0.00 0.00 0.00 1.98
279 280 7.255590 GCCCTTTATGAAAATAGCAGCAGATAA 60.256 37.037 0.00 0.00 0.00 1.75
280 281 8.632679 CCCTTTATGAAAATAGCAGCAGATAAA 58.367 33.333 0.00 0.00 0.00 1.40
281 282 9.455847 CCTTTATGAAAATAGCAGCAGATAAAC 57.544 33.333 0.00 0.00 0.00 2.01
284 285 7.870509 ATGAAAATAGCAGCAGATAAACTCA 57.129 32.000 0.00 0.00 0.00 3.41
285 286 7.312657 TGAAAATAGCAGCAGATAAACTCAG 57.687 36.000 0.00 0.00 0.00 3.35
286 287 7.105588 TGAAAATAGCAGCAGATAAACTCAGA 58.894 34.615 0.00 0.00 0.00 3.27
287 288 7.607607 TGAAAATAGCAGCAGATAAACTCAGAA 59.392 33.333 0.00 0.00 0.00 3.02
288 289 7.928307 AAATAGCAGCAGATAAACTCAGAAA 57.072 32.000 0.00 0.00 0.00 2.52
289 290 7.928307 AATAGCAGCAGATAAACTCAGAAAA 57.072 32.000 0.00 0.00 0.00 2.29
290 291 7.928307 ATAGCAGCAGATAAACTCAGAAAAA 57.072 32.000 0.00 0.00 0.00 1.94
311 312 7.429636 AAAAATGGCAGCAAATGATATATGC 57.570 32.000 0.00 0.00 40.34 3.14
312 313 5.731957 AATGGCAGCAAATGATATATGCA 57.268 34.783 0.00 0.00 42.45 3.96
313 314 4.508461 TGGCAGCAAATGATATATGCAC 57.492 40.909 0.00 0.00 42.45 4.57
314 315 3.058085 TGGCAGCAAATGATATATGCACG 60.058 43.478 0.00 0.00 42.45 5.34
315 316 3.058016 GGCAGCAAATGATATATGCACGT 60.058 43.478 0.00 0.00 42.45 4.49
316 317 4.153986 GCAGCAAATGATATATGCACGTC 58.846 43.478 0.00 0.00 42.45 4.34
317 318 4.388790 CAGCAAATGATATATGCACGTCG 58.611 43.478 0.00 0.00 42.45 5.12
318 319 3.433274 AGCAAATGATATATGCACGTCGG 59.567 43.478 0.00 0.00 42.45 4.79
319 320 3.431912 GCAAATGATATATGCACGTCGGA 59.568 43.478 0.00 0.00 39.81 4.55
320 321 4.084066 GCAAATGATATATGCACGTCGGAA 60.084 41.667 0.00 0.00 39.81 4.30
321 322 5.374080 CAAATGATATATGCACGTCGGAAC 58.626 41.667 0.00 0.00 0.00 3.62
322 323 4.521130 ATGATATATGCACGTCGGAACT 57.479 40.909 0.00 0.00 0.00 3.01
323 324 4.316205 TGATATATGCACGTCGGAACTT 57.684 40.909 0.00 0.00 0.00 2.66
324 325 4.048504 TGATATATGCACGTCGGAACTTG 58.951 43.478 0.00 0.00 0.00 3.16
325 326 1.651987 ATATGCACGTCGGAACTTGG 58.348 50.000 0.00 0.00 0.00 3.61
326 327 0.604073 TATGCACGTCGGAACTTGGA 59.396 50.000 0.00 0.00 29.78 3.53
327 328 0.670546 ATGCACGTCGGAACTTGGAG 60.671 55.000 0.00 0.00 28.74 3.86
328 329 1.006571 GCACGTCGGAACTTGGAGA 60.007 57.895 0.00 0.00 0.00 3.71
329 330 1.009389 GCACGTCGGAACTTGGAGAG 61.009 60.000 0.00 0.00 0.00 3.20
330 331 1.009389 CACGTCGGAACTTGGAGAGC 61.009 60.000 0.00 0.00 0.00 4.09
331 332 1.179814 ACGTCGGAACTTGGAGAGCT 61.180 55.000 0.00 0.00 0.00 4.09
332 333 0.038159 CGTCGGAACTTGGAGAGCTT 60.038 55.000 0.00 0.00 0.00 3.74
333 334 1.433534 GTCGGAACTTGGAGAGCTTG 58.566 55.000 0.00 0.00 0.00 4.01
334 335 0.321671 TCGGAACTTGGAGAGCTTGG 59.678 55.000 0.00 0.00 0.00 3.61
335 336 0.674895 CGGAACTTGGAGAGCTTGGG 60.675 60.000 0.00 0.00 0.00 4.12
336 337 0.402121 GGAACTTGGAGAGCTTGGGT 59.598 55.000 0.00 0.00 0.00 4.51
337 338 1.528129 GAACTTGGAGAGCTTGGGTG 58.472 55.000 0.00 0.00 0.00 4.61
338 339 0.538287 AACTTGGAGAGCTTGGGTGC 60.538 55.000 0.00 0.00 0.00 5.01
339 340 1.073722 CTTGGAGAGCTTGGGTGCA 59.926 57.895 0.00 0.00 34.99 4.57
340 341 1.228245 TTGGAGAGCTTGGGTGCAC 60.228 57.895 8.80 8.80 34.99 4.57
341 342 1.993701 TTGGAGAGCTTGGGTGCACA 61.994 55.000 20.43 0.00 34.99 4.57
342 343 1.968540 GGAGAGCTTGGGTGCACAC 60.969 63.158 20.43 17.25 34.99 3.82
343 344 1.072159 GAGAGCTTGGGTGCACACT 59.928 57.895 21.89 7.94 34.99 3.55
344 345 0.536006 GAGAGCTTGGGTGCACACTT 60.536 55.000 21.89 3.00 34.99 3.16
345 346 0.536006 AGAGCTTGGGTGCACACTTC 60.536 55.000 21.89 12.35 34.99 3.01
346 347 0.819259 GAGCTTGGGTGCACACTTCA 60.819 55.000 21.89 8.88 34.99 3.02
347 348 1.103398 AGCTTGGGTGCACACTTCAC 61.103 55.000 21.89 7.25 34.99 3.18
348 349 1.648720 CTTGGGTGCACACTTCACG 59.351 57.895 21.89 5.82 35.39 4.35
349 350 2.392613 CTTGGGTGCACACTTCACGC 62.393 60.000 21.89 0.00 44.49 5.34
350 351 3.660111 GGGTGCACACTTCACGCC 61.660 66.667 20.43 3.78 40.25 5.68
351 352 3.660111 GGTGCACACTTCACGCCC 61.660 66.667 20.43 0.00 35.39 6.13
352 353 2.591715 GTGCACACTTCACGCCCT 60.592 61.111 13.17 0.00 0.00 5.19
353 354 2.280797 TGCACACTTCACGCCCTC 60.281 61.111 0.00 0.00 0.00 4.30
354 355 3.414700 GCACACTTCACGCCCTCG 61.415 66.667 0.00 0.00 42.43 4.63
355 356 3.414700 CACACTTCACGCCCTCGC 61.415 66.667 0.00 0.00 39.84 5.03
356 357 4.681978 ACACTTCACGCCCTCGCC 62.682 66.667 0.00 0.00 39.84 5.54
357 358 4.379243 CACTTCACGCCCTCGCCT 62.379 66.667 0.00 0.00 39.84 5.52
358 359 4.070552 ACTTCACGCCCTCGCCTC 62.071 66.667 0.00 0.00 39.84 4.70
365 366 4.388499 GCCCTCGCCTCGGTCAAA 62.388 66.667 0.00 0.00 0.00 2.69
366 367 2.125512 CCCTCGCCTCGGTCAAAG 60.126 66.667 0.00 0.00 0.00 2.77
367 368 2.815647 CCTCGCCTCGGTCAAAGC 60.816 66.667 0.00 0.00 0.00 3.51
368 369 2.048222 CTCGCCTCGGTCAAAGCA 60.048 61.111 0.00 0.00 0.00 3.91
369 370 2.048222 TCGCCTCGGTCAAAGCAG 60.048 61.111 0.00 0.00 0.00 4.24
370 371 2.048222 CGCCTCGGTCAAAGCAGA 60.048 61.111 0.00 0.00 0.00 4.26
371 372 2.097038 CGCCTCGGTCAAAGCAGAG 61.097 63.158 0.00 0.00 0.00 3.35
372 373 4.606071 CCTCGGTCAAAGCAGAGG 57.394 61.111 0.00 0.00 43.43 3.69
374 375 3.914984 CTCGGTCAAAGCAGAGGAA 57.085 52.632 0.00 0.00 0.00 3.36
375 376 1.433534 CTCGGTCAAAGCAGAGGAAC 58.566 55.000 0.00 0.00 0.00 3.62
376 377 0.034896 TCGGTCAAAGCAGAGGAACC 59.965 55.000 0.00 0.00 0.00 3.62
377 378 0.250295 CGGTCAAAGCAGAGGAACCA 60.250 55.000 0.00 0.00 0.00 3.67
378 379 1.239347 GGTCAAAGCAGAGGAACCAC 58.761 55.000 0.00 0.00 0.00 4.16
379 380 1.202818 GGTCAAAGCAGAGGAACCACT 60.203 52.381 0.00 0.00 0.00 4.00
380 381 2.038557 GGTCAAAGCAGAGGAACCACTA 59.961 50.000 0.00 0.00 0.00 2.74
381 382 3.067833 GTCAAAGCAGAGGAACCACTAC 58.932 50.000 0.00 0.00 0.00 2.73
382 383 2.038557 TCAAAGCAGAGGAACCACTACC 59.961 50.000 0.00 0.00 0.00 3.18
383 384 1.729586 AAGCAGAGGAACCACTACCA 58.270 50.000 0.00 0.00 0.00 3.25
384 385 0.977395 AGCAGAGGAACCACTACCAC 59.023 55.000 0.00 0.00 0.00 4.16
385 386 0.036294 GCAGAGGAACCACTACCACC 60.036 60.000 0.00 0.00 0.00 4.61
386 387 1.348064 CAGAGGAACCACTACCACCA 58.652 55.000 0.00 0.00 0.00 4.17
387 388 1.002087 CAGAGGAACCACTACCACCAC 59.998 57.143 0.00 0.00 0.00 4.16
388 389 1.053424 GAGGAACCACTACCACCACA 58.947 55.000 0.00 0.00 0.00 4.17
389 390 1.002087 GAGGAACCACTACCACCACAG 59.998 57.143 0.00 0.00 0.00 3.66
390 391 0.605589 GGAACCACTACCACCACAGC 60.606 60.000 0.00 0.00 0.00 4.40
391 392 0.396811 GAACCACTACCACCACAGCT 59.603 55.000 0.00 0.00 0.00 4.24
392 393 1.621814 GAACCACTACCACCACAGCTA 59.378 52.381 0.00 0.00 0.00 3.32
393 394 1.267121 ACCACTACCACCACAGCTAG 58.733 55.000 0.00 0.00 0.00 3.42
394 395 0.108138 CCACTACCACCACAGCTAGC 60.108 60.000 6.62 6.62 0.00 3.42
395 396 0.898320 CACTACCACCACAGCTAGCT 59.102 55.000 12.68 12.68 0.00 3.32
396 397 1.276421 CACTACCACCACAGCTAGCTT 59.724 52.381 16.46 3.91 0.00 3.74
397 398 1.550976 ACTACCACCACAGCTAGCTTC 59.449 52.381 16.46 0.00 0.00 3.86
398 399 1.827969 CTACCACCACAGCTAGCTTCT 59.172 52.381 16.46 0.00 0.00 2.85
399 400 1.059913 ACCACCACAGCTAGCTTCTT 58.940 50.000 16.46 0.00 0.00 2.52
400 401 1.002544 ACCACCACAGCTAGCTTCTTC 59.997 52.381 16.46 0.00 0.00 2.87
401 402 1.277557 CCACCACAGCTAGCTTCTTCT 59.722 52.381 16.46 0.00 0.00 2.85
402 403 2.289945 CCACCACAGCTAGCTTCTTCTT 60.290 50.000 16.46 0.00 0.00 2.52
403 404 2.999355 CACCACAGCTAGCTTCTTCTTC 59.001 50.000 16.46 0.00 0.00 2.87
404 405 2.903135 ACCACAGCTAGCTTCTTCTTCT 59.097 45.455 16.46 0.00 0.00 2.85
405 406 3.326297 ACCACAGCTAGCTTCTTCTTCTT 59.674 43.478 16.46 0.00 0.00 2.52
406 407 3.932089 CCACAGCTAGCTTCTTCTTCTTC 59.068 47.826 16.46 0.00 0.00 2.87
407 408 3.932089 CACAGCTAGCTTCTTCTTCTTCC 59.068 47.826 16.46 0.00 0.00 3.46
408 409 3.580458 ACAGCTAGCTTCTTCTTCTTCCA 59.420 43.478 16.46 0.00 0.00 3.53
409 410 4.183101 CAGCTAGCTTCTTCTTCTTCCAG 58.817 47.826 16.46 0.00 0.00 3.86
410 411 2.935849 GCTAGCTTCTTCTTCTTCCAGC 59.064 50.000 7.70 0.00 0.00 4.85
411 412 3.618507 GCTAGCTTCTTCTTCTTCCAGCA 60.619 47.826 7.70 0.00 0.00 4.41
412 413 3.498774 AGCTTCTTCTTCTTCCAGCAA 57.501 42.857 0.00 0.00 0.00 3.91
413 414 3.410508 AGCTTCTTCTTCTTCCAGCAAG 58.589 45.455 0.00 0.00 0.00 4.01
414 415 3.145286 GCTTCTTCTTCTTCCAGCAAGT 58.855 45.455 0.00 0.00 33.27 3.16
415 416 3.188254 GCTTCTTCTTCTTCCAGCAAGTC 59.812 47.826 0.00 0.00 33.27 3.01
416 417 4.640364 CTTCTTCTTCTTCCAGCAAGTCT 58.360 43.478 0.00 0.00 33.27 3.24
417 418 4.264460 TCTTCTTCTTCCAGCAAGTCTC 57.736 45.455 0.00 0.00 33.27 3.36
418 419 3.900601 TCTTCTTCTTCCAGCAAGTCTCT 59.099 43.478 0.00 0.00 33.27 3.10
419 420 3.951775 TCTTCTTCCAGCAAGTCTCTC 57.048 47.619 0.00 0.00 33.27 3.20
420 421 3.505386 TCTTCTTCCAGCAAGTCTCTCT 58.495 45.455 0.00 0.00 33.27 3.10
421 422 3.509575 TCTTCTTCCAGCAAGTCTCTCTC 59.490 47.826 0.00 0.00 33.27 3.20
422 423 2.175202 TCTTCCAGCAAGTCTCTCTCC 58.825 52.381 0.00 0.00 33.27 3.71
423 424 1.206849 CTTCCAGCAAGTCTCTCTCCC 59.793 57.143 0.00 0.00 0.00 4.30
424 425 0.411452 TCCAGCAAGTCTCTCTCCCT 59.589 55.000 0.00 0.00 0.00 4.20
425 426 0.823460 CCAGCAAGTCTCTCTCCCTC 59.177 60.000 0.00 0.00 0.00 4.30
426 427 1.619432 CCAGCAAGTCTCTCTCCCTCT 60.619 57.143 0.00 0.00 0.00 3.69
427 428 1.750778 CAGCAAGTCTCTCTCCCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
428 429 1.640670 AGCAAGTCTCTCTCCCTCTCT 59.359 52.381 0.00 0.00 0.00 3.10
429 430 2.024414 GCAAGTCTCTCTCCCTCTCTC 58.976 57.143 0.00 0.00 0.00 3.20
430 431 2.357154 GCAAGTCTCTCTCCCTCTCTCT 60.357 54.545 0.00 0.00 0.00 3.10
431 432 3.545703 CAAGTCTCTCTCCCTCTCTCTC 58.454 54.545 0.00 0.00 0.00 3.20
432 433 3.136641 AGTCTCTCTCCCTCTCTCTCT 57.863 52.381 0.00 0.00 0.00 3.10
433 434 3.041946 AGTCTCTCTCCCTCTCTCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
434 435 3.041946 GTCTCTCTCCCTCTCTCTCTCT 58.958 54.545 0.00 0.00 0.00 3.10
435 436 3.070302 GTCTCTCTCCCTCTCTCTCTCTC 59.930 56.522 0.00 0.00 0.00 3.20
436 437 3.041211 CTCTCTCCCTCTCTCTCTCTCA 58.959 54.545 0.00 0.00 0.00 3.27
437 438 3.455910 CTCTCTCCCTCTCTCTCTCTCAA 59.544 52.174 0.00 0.00 0.00 3.02
438 439 4.047166 TCTCTCCCTCTCTCTCTCTCAAT 58.953 47.826 0.00 0.00 0.00 2.57
439 440 5.223655 TCTCTCCCTCTCTCTCTCTCAATA 58.776 45.833 0.00 0.00 0.00 1.90
440 441 5.669904 TCTCTCCCTCTCTCTCTCTCAATAA 59.330 44.000 0.00 0.00 0.00 1.40
441 442 6.332635 TCTCTCCCTCTCTCTCTCTCAATAAT 59.667 42.308 0.00 0.00 0.00 1.28
442 443 6.921412 TCTCCCTCTCTCTCTCTCAATAATT 58.079 40.000 0.00 0.00 0.00 1.40
443 444 7.361438 TCTCCCTCTCTCTCTCTCAATAATTT 58.639 38.462 0.00 0.00 0.00 1.82
444 445 7.505585 TCTCCCTCTCTCTCTCTCAATAATTTC 59.494 40.741 0.00 0.00 0.00 2.17
445 446 6.553100 TCCCTCTCTCTCTCTCAATAATTTCC 59.447 42.308 0.00 0.00 0.00 3.13
446 447 6.446318 CCTCTCTCTCTCTCAATAATTTCCG 58.554 44.000 0.00 0.00 0.00 4.30
447 448 6.264292 CCTCTCTCTCTCTCAATAATTTCCGA 59.736 42.308 0.00 0.00 0.00 4.55
448 449 7.039784 CCTCTCTCTCTCTCAATAATTTCCGAT 60.040 40.741 0.00 0.00 0.00 4.18
449 450 7.881142 TCTCTCTCTCTCAATAATTTCCGATC 58.119 38.462 0.00 0.00 0.00 3.69
450 451 6.673106 TCTCTCTCTCAATAATTTCCGATCG 58.327 40.000 8.51 8.51 0.00 3.69
451 452 5.223382 TCTCTCTCAATAATTTCCGATCGC 58.777 41.667 10.32 0.00 0.00 4.58
452 453 4.307432 TCTCTCAATAATTTCCGATCGCC 58.693 43.478 10.32 0.00 0.00 5.54
453 454 3.399330 TCTCAATAATTTCCGATCGCCC 58.601 45.455 10.32 0.00 0.00 6.13
454 455 3.138304 CTCAATAATTTCCGATCGCCCA 58.862 45.455 10.32 0.00 0.00 5.36
455 456 2.875933 TCAATAATTTCCGATCGCCCAC 59.124 45.455 10.32 0.00 0.00 4.61
456 457 2.878406 CAATAATTTCCGATCGCCCACT 59.122 45.455 10.32 0.00 0.00 4.00
457 458 2.234300 TAATTTCCGATCGCCCACTC 57.766 50.000 10.32 0.00 0.00 3.51
458 459 0.463833 AATTTCCGATCGCCCACTCC 60.464 55.000 10.32 0.00 0.00 3.85
459 460 2.644555 ATTTCCGATCGCCCACTCCG 62.645 60.000 10.32 0.00 0.00 4.63
470 471 4.379243 CACTCCGGCCGCTCAAGT 62.379 66.667 22.85 16.73 0.00 3.16
471 472 3.626924 ACTCCGGCCGCTCAAGTT 61.627 61.111 22.85 2.43 0.00 2.66
472 473 2.358737 CTCCGGCCGCTCAAGTTT 60.359 61.111 22.85 0.00 0.00 2.66
473 474 1.966451 CTCCGGCCGCTCAAGTTTT 60.966 57.895 22.85 0.00 0.00 2.43
474 475 1.515521 CTCCGGCCGCTCAAGTTTTT 61.516 55.000 22.85 0.00 0.00 1.94
475 476 0.250381 TCCGGCCGCTCAAGTTTTTA 60.250 50.000 22.85 0.00 0.00 1.52
476 477 0.168128 CCGGCCGCTCAAGTTTTTAG 59.832 55.000 22.85 0.00 0.00 1.85
477 478 0.454452 CGGCCGCTCAAGTTTTTAGC 60.454 55.000 14.67 0.00 0.00 3.09
478 479 0.881796 GGCCGCTCAAGTTTTTAGCT 59.118 50.000 0.00 0.00 34.03 3.32
479 480 1.401539 GGCCGCTCAAGTTTTTAGCTG 60.402 52.381 0.00 0.00 34.03 4.24
480 481 1.969103 CCGCTCAAGTTTTTAGCTGC 58.031 50.000 0.00 0.00 34.03 5.25
481 482 1.595609 CGCTCAAGTTTTTAGCTGCG 58.404 50.000 0.00 0.00 34.03 5.18
482 483 1.331241 GCTCAAGTTTTTAGCTGCGC 58.669 50.000 0.00 0.00 33.40 6.09
483 484 1.595609 CTCAAGTTTTTAGCTGCGCG 58.404 50.000 0.00 0.00 0.00 6.86
484 485 0.385473 TCAAGTTTTTAGCTGCGCGC 60.385 50.000 27.26 27.26 39.57 6.86
485 486 1.440353 AAGTTTTTAGCTGCGCGCG 60.440 52.632 28.44 28.44 45.59 6.86
486 487 3.523873 GTTTTTAGCTGCGCGCGC 61.524 61.111 45.02 45.02 45.59 6.86
487 488 4.752142 TTTTTAGCTGCGCGCGCC 62.752 61.111 46.85 34.04 45.59 6.53
500 501 2.661866 GCGCCGGTCAATCGCTAT 60.662 61.111 14.97 0.00 44.79 2.97
501 502 2.943345 GCGCCGGTCAATCGCTATG 61.943 63.158 14.97 0.00 44.79 2.23
502 503 2.310233 CGCCGGTCAATCGCTATGG 61.310 63.158 1.90 0.00 0.00 2.74
503 504 1.961277 GCCGGTCAATCGCTATGGG 60.961 63.158 1.90 0.00 0.00 4.00
504 505 1.301716 CCGGTCAATCGCTATGGGG 60.302 63.158 0.00 0.00 0.00 4.96
505 506 1.301716 CGGTCAATCGCTATGGGGG 60.302 63.158 0.00 0.00 0.00 5.40
506 507 1.754380 CGGTCAATCGCTATGGGGGA 61.754 60.000 0.00 0.00 41.11 4.81
507 508 0.035458 GGTCAATCGCTATGGGGGAG 59.965 60.000 0.00 0.00 40.21 4.30
508 509 0.603975 GTCAATCGCTATGGGGGAGC 60.604 60.000 0.00 0.00 40.21 4.70
509 510 1.053835 TCAATCGCTATGGGGGAGCA 61.054 55.000 0.00 0.00 40.09 4.26
510 511 0.604780 CAATCGCTATGGGGGAGCAG 60.605 60.000 0.00 0.00 40.09 4.24
511 512 0.764369 AATCGCTATGGGGGAGCAGA 60.764 55.000 0.00 0.00 40.09 4.26
512 513 0.764369 ATCGCTATGGGGGAGCAGAA 60.764 55.000 0.00 0.00 40.09 3.02
513 514 0.980754 TCGCTATGGGGGAGCAGAAA 60.981 55.000 0.00 0.00 40.09 2.52
514 515 0.107214 CGCTATGGGGGAGCAGAAAA 60.107 55.000 0.00 0.00 40.09 2.29
515 516 1.681780 CGCTATGGGGGAGCAGAAAAA 60.682 52.381 0.00 0.00 40.09 1.94
516 517 1.751351 GCTATGGGGGAGCAGAAAAAC 59.249 52.381 0.00 0.00 39.84 2.43
517 518 2.883888 GCTATGGGGGAGCAGAAAAACA 60.884 50.000 0.00 0.00 39.84 2.83
518 519 2.397044 ATGGGGGAGCAGAAAAACAA 57.603 45.000 0.00 0.00 0.00 2.83
519 520 1.703411 TGGGGGAGCAGAAAAACAAG 58.297 50.000 0.00 0.00 0.00 3.16
520 521 1.216678 TGGGGGAGCAGAAAAACAAGA 59.783 47.619 0.00 0.00 0.00 3.02
521 522 1.889170 GGGGGAGCAGAAAAACAAGAG 59.111 52.381 0.00 0.00 0.00 2.85
522 523 1.889170 GGGGAGCAGAAAAACAAGAGG 59.111 52.381 0.00 0.00 0.00 3.69
523 524 1.270826 GGGAGCAGAAAAACAAGAGGC 59.729 52.381 0.00 0.00 0.00 4.70
524 525 1.956477 GGAGCAGAAAAACAAGAGGCA 59.044 47.619 0.00 0.00 0.00 4.75
525 526 2.030451 GGAGCAGAAAAACAAGAGGCAG 60.030 50.000 0.00 0.00 0.00 4.85
526 527 1.339291 AGCAGAAAAACAAGAGGCAGC 59.661 47.619 0.00 0.00 0.00 5.25
527 528 1.927710 GCAGAAAAACAAGAGGCAGCG 60.928 52.381 0.00 0.00 0.00 5.18
528 529 0.954452 AGAAAAACAAGAGGCAGCGG 59.046 50.000 0.00 0.00 0.00 5.52
529 530 0.668535 GAAAAACAAGAGGCAGCGGT 59.331 50.000 0.00 0.00 0.00 5.68
530 531 1.067060 GAAAAACAAGAGGCAGCGGTT 59.933 47.619 0.00 0.00 0.00 4.44
531 532 1.111277 AAAACAAGAGGCAGCGGTTT 58.889 45.000 0.00 0.00 33.45 3.27
532 533 1.111277 AAACAAGAGGCAGCGGTTTT 58.889 45.000 0.00 0.00 0.00 2.43
533 534 1.111277 AACAAGAGGCAGCGGTTTTT 58.889 45.000 0.00 0.00 0.00 1.94
534 535 0.668535 ACAAGAGGCAGCGGTTTTTC 59.331 50.000 0.00 0.00 0.00 2.29
535 536 0.039165 CAAGAGGCAGCGGTTTTTCC 60.039 55.000 0.00 0.00 0.00 3.13
536 537 0.467290 AAGAGGCAGCGGTTTTTCCA 60.467 50.000 0.00 0.00 35.57 3.53
537 538 1.172812 AGAGGCAGCGGTTTTTCCAC 61.173 55.000 0.00 0.00 35.57 4.02
538 539 1.452145 GAGGCAGCGGTTTTTCCACA 61.452 55.000 0.00 0.00 35.57 4.17
539 540 1.040339 AGGCAGCGGTTTTTCCACAA 61.040 50.000 0.00 0.00 35.57 3.33
540 541 0.874175 GGCAGCGGTTTTTCCACAAC 60.874 55.000 0.00 0.00 35.57 3.32
541 542 1.206115 GCAGCGGTTTTTCCACAACG 61.206 55.000 0.00 0.00 35.57 4.10
542 543 0.593773 CAGCGGTTTTTCCACAACGG 60.594 55.000 0.00 0.00 35.57 4.44
543 544 1.947146 GCGGTTTTTCCACAACGGC 60.947 57.895 0.00 0.00 41.45 5.68
544 545 1.655959 CGGTTTTTCCACAACGGCG 60.656 57.895 4.80 4.80 35.57 6.46
545 546 1.728672 GGTTTTTCCACAACGGCGA 59.271 52.632 16.62 0.00 35.97 5.54
546 547 0.317519 GGTTTTTCCACAACGGCGAG 60.318 55.000 16.62 8.41 35.97 5.03
547 548 0.317519 GTTTTTCCACAACGGCGAGG 60.318 55.000 16.62 10.06 33.14 4.63
548 549 1.448922 TTTTTCCACAACGGCGAGGG 61.449 55.000 16.62 6.64 33.14 4.30
549 550 3.835790 TTTCCACAACGGCGAGGGG 62.836 63.158 16.62 16.86 33.14 4.79
567 568 3.793144 CAGCGGCGGCAAGAAGTC 61.793 66.667 19.21 0.00 43.41 3.01
574 575 3.464628 GGCAAGAAGTCGAGCGTC 58.535 61.111 0.00 0.00 0.00 5.19
575 576 2.437343 GGCAAGAAGTCGAGCGTCG 61.437 63.158 0.00 1.67 42.10 5.12
576 577 3.060663 GCAAGAAGTCGAGCGTCGC 62.061 63.158 9.80 9.80 40.21 5.19
577 578 2.502080 AAGAAGTCGAGCGTCGCG 60.502 61.111 12.30 0.00 40.21 5.87
578 579 3.948086 AAGAAGTCGAGCGTCGCGG 62.948 63.158 12.30 8.30 40.21 6.46
579 580 4.755614 GAAGTCGAGCGTCGCGGT 62.756 66.667 12.30 3.73 40.21 5.68
594 595 4.840005 GGTGCTAGCCTGCGGTCC 62.840 72.222 13.29 0.00 35.36 4.46
685 686 3.304251 GAGACCACTCCTCTGGCC 58.696 66.667 0.00 0.00 37.19 5.36
686 687 2.681778 AGACCACTCCTCTGGCCG 60.682 66.667 0.00 0.00 34.20 6.13
687 688 4.459089 GACCACTCCTCTGGCCGC 62.459 72.222 0.00 0.00 34.20 6.53
690 691 3.790437 CACTCCTCTGGCCGCCAT 61.790 66.667 13.86 0.00 30.82 4.40
691 692 3.790437 ACTCCTCTGGCCGCCATG 61.790 66.667 13.86 9.01 30.82 3.66
742 743 4.641645 CTGGCGGCACCCAGTTCA 62.642 66.667 7.97 0.00 45.87 3.18
743 744 4.641645 TGGCGGCACCCAGTTCAG 62.642 66.667 7.97 0.00 37.83 3.02
752 753 3.726517 CCAGTTCAGCGGCCGTTG 61.727 66.667 33.34 33.34 0.00 4.10
753 754 4.389576 CAGTTCAGCGGCCGTTGC 62.390 66.667 34.13 22.19 0.00 4.17
772 773 3.803082 CCGCAAGATGCCACGGTG 61.803 66.667 0.00 0.00 41.12 4.94
773 774 3.803082 CGCAAGATGCCACGGTGG 61.803 66.667 22.87 22.87 41.12 4.61
774 775 2.359850 GCAAGATGCCACGGTGGA 60.360 61.111 30.65 15.59 40.96 4.02
775 776 2.401766 GCAAGATGCCACGGTGGAG 61.402 63.158 30.65 12.46 40.96 3.86
776 777 1.746615 CAAGATGCCACGGTGGAGG 60.747 63.158 30.65 4.87 40.96 4.30
777 778 1.918293 AAGATGCCACGGTGGAGGA 60.918 57.895 30.65 13.38 40.96 3.71
778 779 2.125106 GATGCCACGGTGGAGGAC 60.125 66.667 30.65 13.08 40.96 3.85
779 780 3.682292 GATGCCACGGTGGAGGACC 62.682 68.421 30.65 12.70 40.96 4.46
780 781 4.954118 TGCCACGGTGGAGGACCT 62.954 66.667 30.65 0.00 43.55 3.85
781 782 4.394712 GCCACGGTGGAGGACCTG 62.395 72.222 30.65 1.78 43.55 4.00
782 783 3.706373 CCACGGTGGAGGACCTGG 61.706 72.222 22.77 0.00 43.55 4.45
783 784 2.923035 CACGGTGGAGGACCTGGT 60.923 66.667 0.00 0.00 43.55 4.00
784 785 2.923035 ACGGTGGAGGACCTGGTG 60.923 66.667 2.82 0.00 43.55 4.17
785 786 3.706373 CGGTGGAGGACCTGGTGG 61.706 72.222 2.82 0.00 43.55 4.61
798 799 2.032681 GGTGGTGACCAGTCCAGC 59.967 66.667 3.58 0.00 42.59 4.85
799 800 2.357517 GTGGTGACCAGTCCAGCG 60.358 66.667 3.58 0.00 32.34 5.18
800 801 3.625897 TGGTGACCAGTCCAGCGG 61.626 66.667 0.00 0.00 35.00 5.52
831 832 6.291377 TGGCTAGAATTGGTAGCTAGAATTG 58.709 40.000 13.13 3.73 42.27 2.32
856 857 2.562738 GTGGAAGGGAAATGAAGGTTGG 59.437 50.000 0.00 0.00 0.00 3.77
860 861 4.570719 GGAAGGGAAATGAAGGTTGGATCT 60.571 45.833 0.00 0.00 0.00 2.75
862 863 5.796502 AGGGAAATGAAGGTTGGATCTTA 57.203 39.130 0.00 0.00 0.00 2.10
864 865 5.015178 AGGGAAATGAAGGTTGGATCTTACA 59.985 40.000 0.00 0.00 0.00 2.41
866 867 6.183360 GGGAAATGAAGGTTGGATCTTACATG 60.183 42.308 0.00 0.00 0.00 3.21
867 868 6.183360 GGAAATGAAGGTTGGATCTTACATGG 60.183 42.308 0.00 0.00 0.00 3.66
868 869 3.620488 TGAAGGTTGGATCTTACATGGC 58.380 45.455 0.00 0.00 0.00 4.40
892 897 0.250252 TGGATTGCAGTGCGAGAACA 60.250 50.000 11.50 6.74 0.00 3.18
910 915 0.030504 CAAGCATTTCGTGTGCCACA 59.969 50.000 0.00 0.00 43.50 4.17
911 916 0.743688 AAGCATTTCGTGTGCCACAA 59.256 45.000 0.00 0.00 43.50 3.33
914 919 1.757574 CATTTCGTGTGCCACAACTG 58.242 50.000 0.00 0.00 33.40 3.16
915 920 0.030638 ATTTCGTGTGCCACAACTGC 59.969 50.000 0.00 0.00 33.40 4.40
916 921 2.316361 TTTCGTGTGCCACAACTGCG 62.316 55.000 0.00 0.00 33.40 5.18
917 922 4.312231 CGTGTGCCACAACTGCGG 62.312 66.667 0.00 0.00 33.40 5.69
918 923 3.209097 GTGTGCCACAACTGCGGT 61.209 61.111 0.00 0.00 34.08 5.68
919 924 3.208383 TGTGCCACAACTGCGGTG 61.208 61.111 0.00 0.00 36.03 4.94
924 929 4.012895 CACAACTGCGGTGGCGAC 62.013 66.667 0.00 0.00 44.10 5.19
959 994 2.967076 CACGACCAAGCACTGCGT 60.967 61.111 0.00 0.00 35.33 5.24
1007 1042 2.579201 CTCCCGCTTCATGGACGT 59.421 61.111 0.00 0.00 0.00 4.34
1009 1044 2.225791 CTCCCGCTTCATGGACGTCA 62.226 60.000 18.91 3.91 0.00 4.35
1025 1060 1.992170 GTCATGGTGGACGTCTACAC 58.008 55.000 29.76 21.91 36.89 2.90
1045 1080 0.391793 GGTGGAGTGCCTCTACAAGC 60.392 60.000 16.49 1.39 42.50 4.01
1047 1082 1.185618 TGGAGTGCCTCTACAAGCGT 61.186 55.000 2.79 0.00 33.47 5.07
1057 1092 2.240612 CTACAAGCGTTTCGGCTGCC 62.241 60.000 9.11 9.11 43.93 4.85
1143 1187 2.049802 TTCGACTGCCGGTTCGAC 60.050 61.111 20.12 0.00 39.14 4.20
1144 1188 2.742710 CTTCGACTGCCGGTTCGACA 62.743 60.000 20.12 12.60 39.14 4.35
1152 1196 4.421479 CGGTTCGACAGCTCGCCT 62.421 66.667 0.00 0.00 39.96 5.52
1222 1275 1.305802 ATCCAGTACGAGGTGGCCA 60.306 57.895 0.00 0.00 33.43 5.36
1224 1277 1.122632 TCCAGTACGAGGTGGCCAAA 61.123 55.000 7.24 0.00 33.43 3.28
1225 1278 0.035439 CCAGTACGAGGTGGCCAAAT 60.035 55.000 7.24 0.00 0.00 2.32
1283 1339 4.373116 GCTGGTCGCGGAGGACAA 62.373 66.667 6.13 0.00 38.70 3.18
1285 1341 2.915659 TGGTCGCGGAGGACAACT 60.916 61.111 6.13 0.00 38.70 3.16
1308 1364 4.974438 TTCCTCCTGGCCGTGGGT 62.974 66.667 13.76 0.00 0.00 4.51
1353 1415 2.333938 CCCGTCAACGTCGTCTGT 59.666 61.111 0.00 0.00 37.74 3.41
1356 1418 0.868602 CCGTCAACGTCGTCTGTGTT 60.869 55.000 0.00 0.00 37.74 3.32
1404 1484 3.626924 GTGCTCTGGGTGGACGGT 61.627 66.667 0.00 0.00 0.00 4.83
1638 6498 4.788679 TGATCACGATTGGAGGACTACTA 58.211 43.478 0.00 0.00 0.00 1.82
2318 7209 4.188247 TGAGGTCATCACTACCGAAAAG 57.812 45.455 0.00 0.00 42.15 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.103263 GTCCAGAGGCCTCGATGTATTT 59.897 50.000 26.95 3.86 34.09 1.40
1 2 1.689273 GTCCAGAGGCCTCGATGTATT 59.311 52.381 26.95 4.70 34.09 1.89
3 4 0.755698 GGTCCAGAGGCCTCGATGTA 60.756 60.000 26.95 5.06 34.09 2.29
5 6 2.060383 TGGTCCAGAGGCCTCGATG 61.060 63.158 26.95 19.91 34.09 3.84
6 7 2.060980 GTGGTCCAGAGGCCTCGAT 61.061 63.158 26.95 8.04 34.09 3.59
7 8 1.859841 TAGTGGTCCAGAGGCCTCGA 61.860 60.000 26.95 16.37 34.09 4.04
8 9 0.757188 ATAGTGGTCCAGAGGCCTCG 60.757 60.000 26.95 20.34 34.09 4.63
9 10 1.139853 CAATAGTGGTCCAGAGGCCTC 59.860 57.143 26.22 26.22 0.00 4.70
10 11 1.207791 CAATAGTGGTCCAGAGGCCT 58.792 55.000 3.86 3.86 0.00 5.19
11 12 0.464554 GCAATAGTGGTCCAGAGGCC 60.465 60.000 0.00 0.00 0.00 5.19
12 13 0.464554 GGCAATAGTGGTCCAGAGGC 60.465 60.000 0.00 0.00 0.00 4.70
13 14 0.179073 CGGCAATAGTGGTCCAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
14 15 0.179073 CCGGCAATAGTGGTCCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
15 16 1.904771 CCGGCAATAGTGGTCCAGA 59.095 57.895 0.00 0.00 0.00 3.86
16 17 1.819632 GCCGGCAATAGTGGTCCAG 60.820 63.158 24.80 0.00 0.00 3.86
17 18 2.270850 GCCGGCAATAGTGGTCCA 59.729 61.111 24.80 0.00 0.00 4.02
18 19 1.819632 CTGCCGGCAATAGTGGTCC 60.820 63.158 32.09 0.00 0.00 4.46
19 20 0.179045 ATCTGCCGGCAATAGTGGTC 60.179 55.000 32.09 0.00 0.00 4.02
20 21 0.179045 GATCTGCCGGCAATAGTGGT 60.179 55.000 32.09 15.19 0.00 4.16
21 22 1.224069 CGATCTGCCGGCAATAGTGG 61.224 60.000 32.09 17.93 0.00 4.00
22 23 0.249447 TCGATCTGCCGGCAATAGTG 60.249 55.000 32.09 18.74 0.00 2.74
23 24 0.032678 CTCGATCTGCCGGCAATAGT 59.967 55.000 32.09 16.26 0.00 2.12
24 25 0.032678 ACTCGATCTGCCGGCAATAG 59.967 55.000 32.09 23.66 0.00 1.73
25 26 0.032130 GACTCGATCTGCCGGCAATA 59.968 55.000 32.09 21.98 0.00 1.90
26 27 1.227380 GACTCGATCTGCCGGCAAT 60.227 57.895 32.09 24.85 0.00 3.56
27 28 2.184322 GACTCGATCTGCCGGCAA 59.816 61.111 32.09 21.23 0.00 4.52
28 29 4.193334 CGACTCGATCTGCCGGCA 62.193 66.667 30.59 30.59 0.00 5.69
30 31 4.933064 GGCGACTCGATCTGCCGG 62.933 72.222 1.63 0.00 37.30 6.13
32 33 3.889044 TCGGCGACTCGATCTGCC 61.889 66.667 4.99 10.88 41.09 4.85
33 34 2.652496 GTCGGCGACTCGATCTGC 60.652 66.667 31.15 2.42 41.40 4.26
34 35 2.351322 CGTCGGCGACTCGATCTG 60.351 66.667 33.90 15.51 41.40 2.90
35 36 4.239203 GCGTCGGCGACTCGATCT 62.239 66.667 33.90 0.00 41.40 2.75
54 55 2.449031 TATGGGAGCGGCAATAGCGG 62.449 60.000 1.45 0.00 43.41 5.52
55 56 0.391661 ATATGGGAGCGGCAATAGCG 60.392 55.000 1.45 0.00 43.41 4.26
56 57 1.339055 TGATATGGGAGCGGCAATAGC 60.339 52.381 1.45 0.00 41.10 2.97
57 58 2.234661 TCTGATATGGGAGCGGCAATAG 59.765 50.000 1.45 0.00 0.00 1.73
58 59 2.234661 CTCTGATATGGGAGCGGCAATA 59.765 50.000 1.45 0.00 0.00 1.90
59 60 1.002888 CTCTGATATGGGAGCGGCAAT 59.997 52.381 1.45 0.00 0.00 3.56
60 61 0.394192 CTCTGATATGGGAGCGGCAA 59.606 55.000 1.45 0.00 0.00 4.52
61 62 2.052779 CTCTGATATGGGAGCGGCA 58.947 57.895 1.45 0.00 0.00 5.69
62 63 1.375268 GCTCTGATATGGGAGCGGC 60.375 63.158 9.74 0.00 44.01 6.53
66 67 3.784511 ATTGTGGCTCTGATATGGGAG 57.215 47.619 0.00 0.00 0.00 4.30
67 68 4.524802 AAATTGTGGCTCTGATATGGGA 57.475 40.909 0.00 0.00 0.00 4.37
68 69 6.005823 TCATAAATTGTGGCTCTGATATGGG 58.994 40.000 0.00 0.00 0.00 4.00
69 70 6.072286 GGTCATAAATTGTGGCTCTGATATGG 60.072 42.308 0.00 0.00 0.00 2.74
70 71 6.347969 CGGTCATAAATTGTGGCTCTGATATG 60.348 42.308 0.00 0.00 0.00 1.78
71 72 5.702670 CGGTCATAAATTGTGGCTCTGATAT 59.297 40.000 0.00 0.00 0.00 1.63
72 73 5.056480 CGGTCATAAATTGTGGCTCTGATA 58.944 41.667 0.00 0.00 0.00 2.15
73 74 3.879295 CGGTCATAAATTGTGGCTCTGAT 59.121 43.478 0.00 0.00 0.00 2.90
74 75 3.270027 CGGTCATAAATTGTGGCTCTGA 58.730 45.455 0.00 0.00 0.00 3.27
75 76 2.355756 CCGGTCATAAATTGTGGCTCTG 59.644 50.000 0.00 0.00 0.00 3.35
76 77 2.026262 ACCGGTCATAAATTGTGGCTCT 60.026 45.455 0.00 0.00 0.00 4.09
77 78 2.097466 CACCGGTCATAAATTGTGGCTC 59.903 50.000 2.59 0.00 0.00 4.70
78 79 2.091541 CACCGGTCATAAATTGTGGCT 58.908 47.619 2.59 0.00 0.00 4.75
79 80 1.134175 CCACCGGTCATAAATTGTGGC 59.866 52.381 2.59 0.00 37.10 5.01
80 81 2.422127 GTCCACCGGTCATAAATTGTGG 59.578 50.000 2.59 0.00 43.57 4.17
81 82 3.078097 TGTCCACCGGTCATAAATTGTG 58.922 45.455 2.59 0.00 0.00 3.33
82 83 3.078837 GTGTCCACCGGTCATAAATTGT 58.921 45.455 2.59 0.00 0.00 2.71
83 84 3.078097 TGTGTCCACCGGTCATAAATTG 58.922 45.455 2.59 0.00 0.00 2.32
84 85 3.426787 TGTGTCCACCGGTCATAAATT 57.573 42.857 2.59 0.00 0.00 1.82
85 86 3.426787 TTGTGTCCACCGGTCATAAAT 57.573 42.857 2.59 0.00 0.00 1.40
86 87 2.932855 TTGTGTCCACCGGTCATAAA 57.067 45.000 2.59 0.00 0.00 1.40
87 88 3.770388 TCTATTGTGTCCACCGGTCATAA 59.230 43.478 2.59 5.12 0.00 1.90
88 89 3.367321 TCTATTGTGTCCACCGGTCATA 58.633 45.455 2.59 0.00 0.00 2.15
89 90 2.168521 CTCTATTGTGTCCACCGGTCAT 59.831 50.000 2.59 0.00 0.00 3.06
90 91 1.548719 CTCTATTGTGTCCACCGGTCA 59.451 52.381 2.59 0.00 0.00 4.02
91 92 1.549170 ACTCTATTGTGTCCACCGGTC 59.451 52.381 2.59 0.00 0.00 4.79
92 93 1.549170 GACTCTATTGTGTCCACCGGT 59.451 52.381 0.00 0.00 32.37 5.28
93 94 1.548719 TGACTCTATTGTGTCCACCGG 59.451 52.381 0.00 0.00 36.26 5.28
94 95 3.526931 ATGACTCTATTGTGTCCACCG 57.473 47.619 6.85 0.00 36.26 4.94
95 96 5.705441 TCAAAATGACTCTATTGTGTCCACC 59.295 40.000 6.85 0.00 36.26 4.61
96 97 6.801539 TCAAAATGACTCTATTGTGTCCAC 57.198 37.500 6.85 0.00 36.26 4.02
97 98 7.223584 TCTTCAAAATGACTCTATTGTGTCCA 58.776 34.615 6.85 0.00 36.26 4.02
98 99 7.625185 GCTCTTCAAAATGACTCTATTGTGTCC 60.625 40.741 6.85 0.00 36.26 4.02
99 100 7.095060 TGCTCTTCAAAATGACTCTATTGTGTC 60.095 37.037 2.91 2.91 37.26 3.67
100 101 6.712095 TGCTCTTCAAAATGACTCTATTGTGT 59.288 34.615 0.00 0.00 0.00 3.72
101 102 7.137490 TGCTCTTCAAAATGACTCTATTGTG 57.863 36.000 0.00 0.00 0.00 3.33
102 103 7.446625 AGTTGCTCTTCAAAATGACTCTATTGT 59.553 33.333 0.00 0.00 36.26 2.71
103 104 7.814642 AGTTGCTCTTCAAAATGACTCTATTG 58.185 34.615 0.00 0.00 36.26 1.90
104 105 7.992754 AGTTGCTCTTCAAAATGACTCTATT 57.007 32.000 0.00 0.00 36.26 1.73
105 106 7.574592 GCAAGTTGCTCTTCAAAATGACTCTAT 60.575 37.037 20.71 0.00 40.96 1.98
106 107 6.293626 GCAAGTTGCTCTTCAAAATGACTCTA 60.294 38.462 20.71 0.00 40.96 2.43
107 108 5.506982 GCAAGTTGCTCTTCAAAATGACTCT 60.507 40.000 20.71 0.00 40.96 3.24
108 109 4.678742 GCAAGTTGCTCTTCAAAATGACTC 59.321 41.667 20.71 0.00 40.96 3.36
109 110 4.098349 TGCAAGTTGCTCTTCAAAATGACT 59.902 37.500 27.17 0.00 45.31 3.41
110 111 4.362279 TGCAAGTTGCTCTTCAAAATGAC 58.638 39.130 27.17 0.00 45.31 3.06
111 112 4.652421 TGCAAGTTGCTCTTCAAAATGA 57.348 36.364 27.17 0.66 45.31 2.57
112 113 5.721876 TTTGCAAGTTGCTCTTCAAAATG 57.278 34.783 27.17 0.00 45.31 2.32
113 114 6.930667 ATTTTGCAAGTTGCTCTTCAAAAT 57.069 29.167 27.17 23.64 45.31 1.82
114 115 7.264221 TCTATTTTGCAAGTTGCTCTTCAAAA 58.736 30.769 27.17 22.65 45.31 2.44
115 116 6.804677 TCTATTTTGCAAGTTGCTCTTCAAA 58.195 32.000 27.17 16.18 45.31 2.69
116 117 6.389830 TCTATTTTGCAAGTTGCTCTTCAA 57.610 33.333 27.17 11.11 45.31 2.69
117 118 6.579666 ATCTATTTTGCAAGTTGCTCTTCA 57.420 33.333 27.17 5.03 45.31 3.02
118 119 7.880059 AAATCTATTTTGCAAGTTGCTCTTC 57.120 32.000 27.17 0.00 45.31 2.87
119 120 9.933723 AATAAATCTATTTTGCAAGTTGCTCTT 57.066 25.926 27.17 12.63 45.31 2.85
120 121 9.578439 GAATAAATCTATTTTGCAAGTTGCTCT 57.422 29.630 27.17 12.16 45.31 4.09
121 122 9.578439 AGAATAAATCTATTTTGCAAGTTGCTC 57.422 29.630 27.17 11.79 39.62 4.26
145 146 8.748412 CCCTATGGAAATTGTTTGATTTGTAGA 58.252 33.333 0.00 0.00 29.75 2.59
146 147 8.748412 TCCCTATGGAAATTGTTTGATTTGTAG 58.252 33.333 0.00 0.00 37.86 2.74
147 148 8.657387 TCCCTATGGAAATTGTTTGATTTGTA 57.343 30.769 0.00 0.00 37.86 2.41
148 149 7.552050 TCCCTATGGAAATTGTTTGATTTGT 57.448 32.000 0.00 0.00 37.86 2.83
163 164 6.731467 AGCTTCTTATGTTTTTCCCTATGGA 58.269 36.000 0.00 0.00 39.54 3.41
164 165 7.993183 TCTAGCTTCTTATGTTTTTCCCTATGG 59.007 37.037 0.00 0.00 0.00 2.74
165 166 8.964476 TCTAGCTTCTTATGTTTTTCCCTATG 57.036 34.615 0.00 0.00 0.00 2.23
166 167 8.773216 ACTCTAGCTTCTTATGTTTTTCCCTAT 58.227 33.333 0.00 0.00 0.00 2.57
167 168 8.147244 ACTCTAGCTTCTTATGTTTTTCCCTA 57.853 34.615 0.00 0.00 0.00 3.53
168 169 7.021998 ACTCTAGCTTCTTATGTTTTTCCCT 57.978 36.000 0.00 0.00 0.00 4.20
169 170 8.966069 ATACTCTAGCTTCTTATGTTTTTCCC 57.034 34.615 0.00 0.00 0.00 3.97
178 179 9.819267 GGTGTGTTTTATACTCTAGCTTCTTAT 57.181 33.333 0.00 0.00 0.00 1.73
179 180 8.809066 TGGTGTGTTTTATACTCTAGCTTCTTA 58.191 33.333 0.00 0.00 0.00 2.10
180 181 7.676947 TGGTGTGTTTTATACTCTAGCTTCTT 58.323 34.615 0.00 0.00 0.00 2.52
181 182 7.241042 TGGTGTGTTTTATACTCTAGCTTCT 57.759 36.000 0.00 0.00 0.00 2.85
182 183 7.900782 TTGGTGTGTTTTATACTCTAGCTTC 57.099 36.000 0.00 0.00 0.00 3.86
183 184 8.685838 TTTTGGTGTGTTTTATACTCTAGCTT 57.314 30.769 0.00 0.00 0.00 3.74
184 185 8.863872 ATTTTGGTGTGTTTTATACTCTAGCT 57.136 30.769 0.00 0.00 0.00 3.32
185 186 8.947115 AGATTTTGGTGTGTTTTATACTCTAGC 58.053 33.333 0.00 0.00 0.00 3.42
188 189 9.349713 TGAAGATTTTGGTGTGTTTTATACTCT 57.650 29.630 0.00 0.00 0.00 3.24
189 190 9.394477 GTGAAGATTTTGGTGTGTTTTATACTC 57.606 33.333 0.00 0.00 0.00 2.59
190 191 8.073768 CGTGAAGATTTTGGTGTGTTTTATACT 58.926 33.333 0.00 0.00 0.00 2.12
191 192 8.071368 TCGTGAAGATTTTGGTGTGTTTTATAC 58.929 33.333 0.00 0.00 0.00 1.47
192 193 8.155821 TCGTGAAGATTTTGGTGTGTTTTATA 57.844 30.769 0.00 0.00 0.00 0.98
193 194 7.033530 TCGTGAAGATTTTGGTGTGTTTTAT 57.966 32.000 0.00 0.00 0.00 1.40
194 195 6.438259 TCGTGAAGATTTTGGTGTGTTTTA 57.562 33.333 0.00 0.00 0.00 1.52
195 196 5.317733 TCGTGAAGATTTTGGTGTGTTTT 57.682 34.783 0.00 0.00 0.00 2.43
196 197 4.974368 TCGTGAAGATTTTGGTGTGTTT 57.026 36.364 0.00 0.00 0.00 2.83
197 198 4.974368 TTCGTGAAGATTTTGGTGTGTT 57.026 36.364 0.00 0.00 0.00 3.32
198 199 4.974368 TTTCGTGAAGATTTTGGTGTGT 57.026 36.364 0.00 0.00 0.00 3.72
199 200 5.115472 CGAATTTCGTGAAGATTTTGGTGTG 59.885 40.000 10.61 0.00 34.72 3.82
200 201 5.212194 CGAATTTCGTGAAGATTTTGGTGT 58.788 37.500 10.61 0.00 34.72 4.16
201 202 5.729665 CGAATTTCGTGAAGATTTTGGTG 57.270 39.130 10.61 0.00 34.72 4.17
226 227 5.053811 TCGCTCATTCTTTCTGTTGTTACA 58.946 37.500 0.00 0.00 0.00 2.41
227 228 5.591643 TCGCTCATTCTTTCTGTTGTTAC 57.408 39.130 0.00 0.00 0.00 2.50
228 229 6.293407 CCTTTCGCTCATTCTTTCTGTTGTTA 60.293 38.462 0.00 0.00 0.00 2.41
229 230 5.499139 TTTCGCTCATTCTTTCTGTTGTT 57.501 34.783 0.00 0.00 0.00 2.83
230 231 4.023707 CCTTTCGCTCATTCTTTCTGTTGT 60.024 41.667 0.00 0.00 0.00 3.32
231 232 4.470462 CCTTTCGCTCATTCTTTCTGTTG 58.530 43.478 0.00 0.00 0.00 3.33
232 233 3.057946 GCCTTTCGCTCATTCTTTCTGTT 60.058 43.478 0.00 0.00 0.00 3.16
233 234 2.485814 GCCTTTCGCTCATTCTTTCTGT 59.514 45.455 0.00 0.00 0.00 3.41
234 235 2.159462 GGCCTTTCGCTCATTCTTTCTG 60.159 50.000 0.00 0.00 37.74 3.02
235 236 2.087646 GGCCTTTCGCTCATTCTTTCT 58.912 47.619 0.00 0.00 37.74 2.52
236 237 1.133216 GGGCCTTTCGCTCATTCTTTC 59.867 52.381 0.84 0.00 38.16 2.62
237 238 1.177401 GGGCCTTTCGCTCATTCTTT 58.823 50.000 0.84 0.00 38.16 2.52
238 239 0.329596 AGGGCCTTTCGCTCATTCTT 59.670 50.000 0.00 0.00 42.29 2.52
239 240 0.329596 AAGGGCCTTTCGCTCATTCT 59.670 50.000 14.48 0.00 42.29 2.40
240 241 1.177401 AAAGGGCCTTTCGCTCATTC 58.823 50.000 25.68 0.00 42.29 2.67
241 242 2.507407 TAAAGGGCCTTTCGCTCATT 57.493 45.000 33.60 11.40 42.29 2.57
242 243 2.092429 TCATAAAGGGCCTTTCGCTCAT 60.092 45.455 33.60 18.86 42.29 2.90
243 244 1.280710 TCATAAAGGGCCTTTCGCTCA 59.719 47.619 33.60 17.37 42.29 4.26
244 245 2.038387 TCATAAAGGGCCTTTCGCTC 57.962 50.000 33.60 0.00 38.80 5.03
245 246 2.507407 TTCATAAAGGGCCTTTCGCT 57.493 45.000 33.60 17.36 39.97 4.93
246 247 3.586100 TTTTCATAAAGGGCCTTTCGC 57.414 42.857 33.60 0.00 35.21 4.70
247 248 5.163561 TGCTATTTTCATAAAGGGCCTTTCG 60.164 40.000 33.60 24.77 35.21 3.46
248 249 6.220726 TGCTATTTTCATAAAGGGCCTTTC 57.779 37.500 33.60 16.08 35.21 2.62
249 250 5.395657 GCTGCTATTTTCATAAAGGGCCTTT 60.396 40.000 32.37 32.37 37.46 3.11
250 251 4.100035 GCTGCTATTTTCATAAAGGGCCTT 59.900 41.667 14.48 14.48 0.00 4.35
251 252 3.638627 GCTGCTATTTTCATAAAGGGCCT 59.361 43.478 0.00 0.00 0.00 5.19
252 253 3.384467 TGCTGCTATTTTCATAAAGGGCC 59.616 43.478 0.00 0.00 0.00 5.80
253 254 4.339247 TCTGCTGCTATTTTCATAAAGGGC 59.661 41.667 0.00 0.00 0.00 5.19
254 255 6.645790 ATCTGCTGCTATTTTCATAAAGGG 57.354 37.500 0.00 0.00 0.00 3.95
255 256 9.455847 GTTTATCTGCTGCTATTTTCATAAAGG 57.544 33.333 0.00 0.00 0.00 3.11
258 259 9.394767 TGAGTTTATCTGCTGCTATTTTCATAA 57.605 29.630 0.00 0.00 0.00 1.90
259 260 8.962884 TGAGTTTATCTGCTGCTATTTTCATA 57.037 30.769 0.00 0.00 0.00 2.15
260 261 7.772292 TCTGAGTTTATCTGCTGCTATTTTCAT 59.228 33.333 0.00 0.00 0.00 2.57
261 262 7.105588 TCTGAGTTTATCTGCTGCTATTTTCA 58.894 34.615 0.00 0.00 0.00 2.69
262 263 7.545362 TCTGAGTTTATCTGCTGCTATTTTC 57.455 36.000 0.00 0.00 0.00 2.29
263 264 7.928307 TTCTGAGTTTATCTGCTGCTATTTT 57.072 32.000 0.00 0.00 0.00 1.82
264 265 7.928307 TTTCTGAGTTTATCTGCTGCTATTT 57.072 32.000 0.00 0.00 0.00 1.40
265 266 7.928307 TTTTCTGAGTTTATCTGCTGCTATT 57.072 32.000 0.00 0.00 0.00 1.73
266 267 7.928307 TTTTTCTGAGTTTATCTGCTGCTAT 57.072 32.000 0.00 0.00 0.00 2.97
287 288 6.993308 TGCATATATCATTTGCTGCCATTTTT 59.007 30.769 0.00 0.00 37.96 1.94
288 289 6.425721 GTGCATATATCATTTGCTGCCATTTT 59.574 34.615 0.00 0.00 37.96 1.82
289 290 5.929992 GTGCATATATCATTTGCTGCCATTT 59.070 36.000 0.00 0.00 37.96 2.32
290 291 5.475719 GTGCATATATCATTTGCTGCCATT 58.524 37.500 0.00 0.00 37.96 3.16
291 292 4.380128 CGTGCATATATCATTTGCTGCCAT 60.380 41.667 0.00 0.00 37.96 4.40
292 293 3.058085 CGTGCATATATCATTTGCTGCCA 60.058 43.478 0.00 0.00 37.96 4.92
293 294 3.058016 ACGTGCATATATCATTTGCTGCC 60.058 43.478 0.00 0.00 37.96 4.85
294 295 4.151258 ACGTGCATATATCATTTGCTGC 57.849 40.909 0.00 0.00 37.96 5.25
295 296 4.388790 CGACGTGCATATATCATTTGCTG 58.611 43.478 0.00 0.20 37.96 4.41
296 297 3.433274 CCGACGTGCATATATCATTTGCT 59.567 43.478 0.00 0.00 37.96 3.91
297 298 3.431912 TCCGACGTGCATATATCATTTGC 59.568 43.478 0.00 0.00 37.67 3.68
298 299 5.177511 AGTTCCGACGTGCATATATCATTTG 59.822 40.000 0.00 0.00 0.00 2.32
299 300 5.297547 AGTTCCGACGTGCATATATCATTT 58.702 37.500 0.00 0.00 0.00 2.32
300 301 4.883083 AGTTCCGACGTGCATATATCATT 58.117 39.130 0.00 0.00 0.00 2.57
301 302 4.521130 AGTTCCGACGTGCATATATCAT 57.479 40.909 0.00 0.00 0.00 2.45
302 303 4.048504 CAAGTTCCGACGTGCATATATCA 58.951 43.478 0.00 0.00 0.00 2.15
303 304 3.428870 CCAAGTTCCGACGTGCATATATC 59.571 47.826 0.00 0.00 34.45 1.63
304 305 3.069016 TCCAAGTTCCGACGTGCATATAT 59.931 43.478 0.00 0.00 34.45 0.86
305 306 2.427812 TCCAAGTTCCGACGTGCATATA 59.572 45.455 0.00 0.00 34.45 0.86
306 307 1.206132 TCCAAGTTCCGACGTGCATAT 59.794 47.619 0.00 0.00 34.45 1.78
307 308 0.604073 TCCAAGTTCCGACGTGCATA 59.396 50.000 0.00 0.00 34.45 3.14
308 309 0.670546 CTCCAAGTTCCGACGTGCAT 60.671 55.000 0.00 0.00 34.45 3.96
309 310 1.300620 CTCCAAGTTCCGACGTGCA 60.301 57.895 0.00 0.00 34.45 4.57
310 311 1.006571 TCTCCAAGTTCCGACGTGC 60.007 57.895 0.00 0.00 34.45 5.34
311 312 1.009389 GCTCTCCAAGTTCCGACGTG 61.009 60.000 0.00 0.00 35.39 4.49
312 313 1.179814 AGCTCTCCAAGTTCCGACGT 61.180 55.000 0.00 0.00 0.00 4.34
313 314 0.038159 AAGCTCTCCAAGTTCCGACG 60.038 55.000 0.00 0.00 0.00 5.12
314 315 1.433534 CAAGCTCTCCAAGTTCCGAC 58.566 55.000 0.00 0.00 0.00 4.79
315 316 0.321671 CCAAGCTCTCCAAGTTCCGA 59.678 55.000 0.00 0.00 0.00 4.55
316 317 0.674895 CCCAAGCTCTCCAAGTTCCG 60.675 60.000 0.00 0.00 0.00 4.30
317 318 0.402121 ACCCAAGCTCTCCAAGTTCC 59.598 55.000 0.00 0.00 0.00 3.62
318 319 1.528129 CACCCAAGCTCTCCAAGTTC 58.472 55.000 0.00 0.00 0.00 3.01
319 320 0.538287 GCACCCAAGCTCTCCAAGTT 60.538 55.000 0.00 0.00 0.00 2.66
320 321 1.073897 GCACCCAAGCTCTCCAAGT 59.926 57.895 0.00 0.00 0.00 3.16
321 322 1.073722 TGCACCCAAGCTCTCCAAG 59.926 57.895 0.00 0.00 34.99 3.61
322 323 1.228245 GTGCACCCAAGCTCTCCAA 60.228 57.895 5.22 0.00 34.99 3.53
323 324 2.431683 GTGCACCCAAGCTCTCCA 59.568 61.111 5.22 0.00 34.99 3.86
324 325 1.968540 GTGTGCACCCAAGCTCTCC 60.969 63.158 15.69 0.00 34.99 3.71
325 326 0.536006 AAGTGTGCACCCAAGCTCTC 60.536 55.000 15.69 0.00 34.99 3.20
326 327 0.536006 GAAGTGTGCACCCAAGCTCT 60.536 55.000 15.69 0.00 34.99 4.09
327 328 0.819259 TGAAGTGTGCACCCAAGCTC 60.819 55.000 15.69 3.14 34.99 4.09
328 329 1.103398 GTGAAGTGTGCACCCAAGCT 61.103 55.000 15.69 1.82 34.99 3.74
329 330 1.360192 GTGAAGTGTGCACCCAAGC 59.640 57.895 15.69 0.50 0.00 4.01
330 331 1.648720 CGTGAAGTGTGCACCCAAG 59.351 57.895 15.69 5.85 32.74 3.61
331 332 2.477176 GCGTGAAGTGTGCACCCAA 61.477 57.895 15.69 0.00 32.74 4.12
332 333 2.899838 GCGTGAAGTGTGCACCCA 60.900 61.111 15.69 4.31 32.74 4.51
333 334 3.660111 GGCGTGAAGTGTGCACCC 61.660 66.667 15.69 1.68 32.74 4.61
334 335 3.660111 GGGCGTGAAGTGTGCACC 61.660 66.667 15.69 5.76 32.74 5.01
335 336 2.591715 AGGGCGTGAAGTGTGCAC 60.592 61.111 10.75 10.75 0.00 4.57
336 337 2.280797 GAGGGCGTGAAGTGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
337 338 3.414700 CGAGGGCGTGAAGTGTGC 61.415 66.667 0.00 0.00 0.00 4.57
338 339 3.414700 GCGAGGGCGTGAAGTGTG 61.415 66.667 0.00 0.00 40.36 3.82
339 340 4.681978 GGCGAGGGCGTGAAGTGT 62.682 66.667 0.00 0.00 41.24 3.55
340 341 4.379243 AGGCGAGGGCGTGAAGTG 62.379 66.667 0.00 0.00 41.24 3.16
341 342 4.070552 GAGGCGAGGGCGTGAAGT 62.071 66.667 0.00 0.00 41.24 3.01
348 349 4.388499 TTTGACCGAGGCGAGGGC 62.388 66.667 6.27 3.30 37.28 5.19
349 350 2.125512 CTTTGACCGAGGCGAGGG 60.126 66.667 6.27 0.00 0.00 4.30
350 351 2.815647 GCTTTGACCGAGGCGAGG 60.816 66.667 0.00 0.00 0.00 4.63
351 352 2.048222 TGCTTTGACCGAGGCGAG 60.048 61.111 0.00 0.00 0.00 5.03
352 353 2.048222 CTGCTTTGACCGAGGCGA 60.048 61.111 0.00 0.00 0.00 5.54
353 354 2.048222 TCTGCTTTGACCGAGGCG 60.048 61.111 0.00 0.00 0.00 5.52
354 355 1.743252 CCTCTGCTTTGACCGAGGC 60.743 63.158 0.00 0.00 36.91 4.70
355 356 0.321671 TTCCTCTGCTTTGACCGAGG 59.678 55.000 0.00 0.00 43.44 4.63
356 357 1.433534 GTTCCTCTGCTTTGACCGAG 58.566 55.000 0.00 0.00 0.00 4.63
357 358 0.034896 GGTTCCTCTGCTTTGACCGA 59.965 55.000 0.00 0.00 0.00 4.69
358 359 0.250295 TGGTTCCTCTGCTTTGACCG 60.250 55.000 0.00 0.00 0.00 4.79
359 360 1.202818 AGTGGTTCCTCTGCTTTGACC 60.203 52.381 0.00 0.00 0.00 4.02
360 361 2.262423 AGTGGTTCCTCTGCTTTGAC 57.738 50.000 0.00 0.00 0.00 3.18
361 362 2.038557 GGTAGTGGTTCCTCTGCTTTGA 59.961 50.000 8.39 0.00 0.00 2.69
362 363 2.224523 TGGTAGTGGTTCCTCTGCTTTG 60.225 50.000 8.39 0.00 0.00 2.77
363 364 2.054799 TGGTAGTGGTTCCTCTGCTTT 58.945 47.619 8.39 0.00 0.00 3.51
364 365 1.348036 GTGGTAGTGGTTCCTCTGCTT 59.652 52.381 8.39 0.00 0.00 3.91
365 366 0.977395 GTGGTAGTGGTTCCTCTGCT 59.023 55.000 8.39 0.00 0.00 4.24
366 367 0.036294 GGTGGTAGTGGTTCCTCTGC 60.036 60.000 3.99 2.69 0.00 4.26
367 368 1.002087 GTGGTGGTAGTGGTTCCTCTG 59.998 57.143 3.99 0.00 0.00 3.35
368 369 1.349067 GTGGTGGTAGTGGTTCCTCT 58.651 55.000 0.00 0.00 0.00 3.69
369 370 1.002087 CTGTGGTGGTAGTGGTTCCTC 59.998 57.143 0.00 0.00 0.00 3.71
370 371 1.056660 CTGTGGTGGTAGTGGTTCCT 58.943 55.000 0.00 0.00 0.00 3.36
371 372 0.605589 GCTGTGGTGGTAGTGGTTCC 60.606 60.000 0.00 0.00 0.00 3.62
372 373 0.396811 AGCTGTGGTGGTAGTGGTTC 59.603 55.000 0.00 0.00 0.00 3.62
373 374 1.623811 CTAGCTGTGGTGGTAGTGGTT 59.376 52.381 0.00 0.00 34.44 3.67
374 375 1.267121 CTAGCTGTGGTGGTAGTGGT 58.733 55.000 0.00 0.00 34.44 4.16
375 376 0.108138 GCTAGCTGTGGTGGTAGTGG 60.108 60.000 7.70 0.00 39.44 4.00
376 377 0.898320 AGCTAGCTGTGGTGGTAGTG 59.102 55.000 18.57 0.00 39.44 2.74
377 378 1.550976 GAAGCTAGCTGTGGTGGTAGT 59.449 52.381 20.16 0.00 39.44 2.73
378 379 1.827969 AGAAGCTAGCTGTGGTGGTAG 59.172 52.381 20.16 0.00 40.01 3.18
379 380 1.938585 AGAAGCTAGCTGTGGTGGTA 58.061 50.000 20.16 0.00 0.00 3.25
380 381 1.002544 GAAGAAGCTAGCTGTGGTGGT 59.997 52.381 20.16 0.00 0.00 4.16
381 382 1.277557 AGAAGAAGCTAGCTGTGGTGG 59.722 52.381 20.16 0.00 0.00 4.61
382 383 2.758736 AGAAGAAGCTAGCTGTGGTG 57.241 50.000 20.16 0.00 0.00 4.17
383 384 2.903135 AGAAGAAGAAGCTAGCTGTGGT 59.097 45.455 20.16 1.15 0.00 4.16
384 385 3.608316 AGAAGAAGAAGCTAGCTGTGG 57.392 47.619 20.16 0.00 0.00 4.17
385 386 3.932089 GGAAGAAGAAGAAGCTAGCTGTG 59.068 47.826 20.16 0.00 0.00 3.66
386 387 3.580458 TGGAAGAAGAAGAAGCTAGCTGT 59.420 43.478 20.16 8.62 0.00 4.40
387 388 4.183101 CTGGAAGAAGAAGAAGCTAGCTG 58.817 47.826 20.16 0.00 34.07 4.24
388 389 3.369366 GCTGGAAGAAGAAGAAGCTAGCT 60.369 47.826 12.68 12.68 34.07 3.32
389 390 2.935849 GCTGGAAGAAGAAGAAGCTAGC 59.064 50.000 6.62 6.62 34.07 3.42
390 391 4.199432 TGCTGGAAGAAGAAGAAGCTAG 57.801 45.455 0.00 0.00 34.07 3.42
391 392 4.040952 ACTTGCTGGAAGAAGAAGAAGCTA 59.959 41.667 16.13 0.00 34.07 3.32
392 393 3.181446 ACTTGCTGGAAGAAGAAGAAGCT 60.181 43.478 16.13 0.00 34.07 3.74
393 394 3.145286 ACTTGCTGGAAGAAGAAGAAGC 58.855 45.455 16.13 0.00 34.07 3.86
394 395 4.640364 AGACTTGCTGGAAGAAGAAGAAG 58.360 43.478 16.13 0.00 34.07 2.85
395 396 4.346418 AGAGACTTGCTGGAAGAAGAAGAA 59.654 41.667 16.13 0.00 34.07 2.52
396 397 3.900601 AGAGACTTGCTGGAAGAAGAAGA 59.099 43.478 16.13 0.00 34.07 2.87
397 398 4.021192 AGAGAGACTTGCTGGAAGAAGAAG 60.021 45.833 16.13 0.00 34.07 2.85
398 399 3.900601 AGAGAGACTTGCTGGAAGAAGAA 59.099 43.478 16.13 0.00 34.07 2.52
399 400 3.505386 AGAGAGACTTGCTGGAAGAAGA 58.495 45.455 16.13 0.00 34.07 2.87
400 401 3.368323 GGAGAGAGACTTGCTGGAAGAAG 60.368 52.174 16.13 0.00 34.07 2.85
401 402 2.564947 GGAGAGAGACTTGCTGGAAGAA 59.435 50.000 16.13 0.00 34.07 2.52
402 403 2.175202 GGAGAGAGACTTGCTGGAAGA 58.825 52.381 16.13 0.00 34.07 2.87
403 404 1.206849 GGGAGAGAGACTTGCTGGAAG 59.793 57.143 7.41 7.41 37.73 3.46
404 405 1.203237 AGGGAGAGAGACTTGCTGGAA 60.203 52.381 0.00 0.00 0.00 3.53
405 406 0.411452 AGGGAGAGAGACTTGCTGGA 59.589 55.000 0.00 0.00 0.00 3.86
406 407 0.823460 GAGGGAGAGAGACTTGCTGG 59.177 60.000 0.00 0.00 0.00 4.85
407 408 1.750778 GAGAGGGAGAGAGACTTGCTG 59.249 57.143 0.00 0.00 0.00 4.41
408 409 1.640670 AGAGAGGGAGAGAGACTTGCT 59.359 52.381 0.00 0.00 0.00 3.91
409 410 2.024414 GAGAGAGGGAGAGAGACTTGC 58.976 57.143 0.00 0.00 0.00 4.01
410 411 3.200825 AGAGAGAGAGGGAGAGAGACTTG 59.799 52.174 0.00 0.00 0.00 3.16
411 412 3.456277 GAGAGAGAGAGGGAGAGAGACTT 59.544 52.174 0.00 0.00 0.00 3.01
412 413 3.041946 GAGAGAGAGAGGGAGAGAGACT 58.958 54.545 0.00 0.00 0.00 3.24
413 414 3.041946 AGAGAGAGAGAGGGAGAGAGAC 58.958 54.545 0.00 0.00 0.00 3.36
414 415 3.309296 GAGAGAGAGAGAGGGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
415 416 3.041211 TGAGAGAGAGAGAGGGAGAGAG 58.959 54.545 0.00 0.00 0.00 3.20
416 417 3.129262 TGAGAGAGAGAGAGGGAGAGA 57.871 52.381 0.00 0.00 0.00 3.10
417 418 3.931907 TTGAGAGAGAGAGAGGGAGAG 57.068 52.381 0.00 0.00 0.00 3.20
418 419 5.985175 TTATTGAGAGAGAGAGAGGGAGA 57.015 43.478 0.00 0.00 0.00 3.71
419 420 7.255942 GGAAATTATTGAGAGAGAGAGAGGGAG 60.256 44.444 0.00 0.00 0.00 4.30
420 421 6.553100 GGAAATTATTGAGAGAGAGAGAGGGA 59.447 42.308 0.00 0.00 0.00 4.20
421 422 6.516527 CGGAAATTATTGAGAGAGAGAGAGGG 60.517 46.154 0.00 0.00 0.00 4.30
422 423 6.264292 TCGGAAATTATTGAGAGAGAGAGAGG 59.736 42.308 0.00 0.00 0.00 3.69
423 424 7.270757 TCGGAAATTATTGAGAGAGAGAGAG 57.729 40.000 0.00 0.00 0.00 3.20
424 425 7.308288 CGATCGGAAATTATTGAGAGAGAGAGA 60.308 40.741 7.38 0.00 0.00 3.10
425 426 6.801377 CGATCGGAAATTATTGAGAGAGAGAG 59.199 42.308 7.38 0.00 0.00 3.20
426 427 6.673106 CGATCGGAAATTATTGAGAGAGAGA 58.327 40.000 7.38 0.00 0.00 3.10
427 428 5.344665 GCGATCGGAAATTATTGAGAGAGAG 59.655 44.000 18.30 0.00 0.00 3.20
428 429 5.223382 GCGATCGGAAATTATTGAGAGAGA 58.777 41.667 18.30 0.00 0.00 3.10
429 430 4.387256 GGCGATCGGAAATTATTGAGAGAG 59.613 45.833 18.30 0.00 0.00 3.20
430 431 4.307432 GGCGATCGGAAATTATTGAGAGA 58.693 43.478 18.30 0.00 0.00 3.10
431 432 3.433615 GGGCGATCGGAAATTATTGAGAG 59.566 47.826 18.30 0.00 0.00 3.20
432 433 3.181459 TGGGCGATCGGAAATTATTGAGA 60.181 43.478 18.30 0.00 0.00 3.27
433 434 3.058914 GTGGGCGATCGGAAATTATTGAG 60.059 47.826 18.30 0.00 0.00 3.02
434 435 2.875933 GTGGGCGATCGGAAATTATTGA 59.124 45.455 18.30 0.00 0.00 2.57
435 436 2.878406 AGTGGGCGATCGGAAATTATTG 59.122 45.455 18.30 0.00 0.00 1.90
436 437 3.139077 GAGTGGGCGATCGGAAATTATT 58.861 45.455 18.30 0.00 0.00 1.40
437 438 2.550208 GGAGTGGGCGATCGGAAATTAT 60.550 50.000 18.30 0.00 0.00 1.28
438 439 1.202604 GGAGTGGGCGATCGGAAATTA 60.203 52.381 18.30 0.00 0.00 1.40
439 440 0.463833 GGAGTGGGCGATCGGAAATT 60.464 55.000 18.30 0.00 0.00 1.82
440 441 1.146263 GGAGTGGGCGATCGGAAAT 59.854 57.895 18.30 0.00 0.00 2.17
441 442 2.582436 GGAGTGGGCGATCGGAAA 59.418 61.111 18.30 0.00 0.00 3.13
442 443 3.833645 CGGAGTGGGCGATCGGAA 61.834 66.667 18.30 0.00 0.00 4.30
453 454 3.883744 AACTTGAGCGGCCGGAGTG 62.884 63.158 29.38 0.00 0.00 3.51
454 455 2.676163 AAAACTTGAGCGGCCGGAGT 62.676 55.000 29.38 4.14 0.00 3.85
455 456 1.515521 AAAAACTTGAGCGGCCGGAG 61.516 55.000 29.38 0.00 0.00 4.63
456 457 0.250381 TAAAAACTTGAGCGGCCGGA 60.250 50.000 29.38 0.00 0.00 5.14
457 458 0.168128 CTAAAAACTTGAGCGGCCGG 59.832 55.000 29.38 12.50 0.00 6.13
458 459 0.454452 GCTAAAAACTTGAGCGGCCG 60.454 55.000 24.05 24.05 0.00 6.13
459 460 0.881796 AGCTAAAAACTTGAGCGGCC 59.118 50.000 0.00 0.00 41.23 6.13
460 461 1.969103 CAGCTAAAAACTTGAGCGGC 58.031 50.000 0.00 0.00 41.23 6.53
461 462 1.725931 CGCAGCTAAAAACTTGAGCGG 60.726 52.381 0.00 0.00 41.23 5.52
462 463 1.595609 CGCAGCTAAAAACTTGAGCG 58.404 50.000 0.00 0.00 41.23 5.03
484 485 2.310233 CCATAGCGATTGACCGGCG 61.310 63.158 0.00 0.00 0.00 6.46
485 486 1.961277 CCCATAGCGATTGACCGGC 60.961 63.158 0.00 0.00 0.00 6.13
486 487 1.301716 CCCCATAGCGATTGACCGG 60.302 63.158 0.00 0.00 0.00 5.28
487 488 1.301716 CCCCCATAGCGATTGACCG 60.302 63.158 0.00 0.00 0.00 4.79
488 489 0.035458 CTCCCCCATAGCGATTGACC 59.965 60.000 0.00 0.00 0.00 4.02
489 490 0.603975 GCTCCCCCATAGCGATTGAC 60.604 60.000 0.00 0.00 0.00 3.18
490 491 1.053835 TGCTCCCCCATAGCGATTGA 61.054 55.000 0.00 0.00 43.11 2.57
491 492 0.604780 CTGCTCCCCCATAGCGATTG 60.605 60.000 0.00 0.00 43.11 2.67
492 493 0.764369 TCTGCTCCCCCATAGCGATT 60.764 55.000 0.00 0.00 43.11 3.34
493 494 0.764369 TTCTGCTCCCCCATAGCGAT 60.764 55.000 0.00 0.00 43.11 4.58
494 495 0.980754 TTTCTGCTCCCCCATAGCGA 60.981 55.000 0.00 0.00 43.11 4.93
495 496 0.107214 TTTTCTGCTCCCCCATAGCG 60.107 55.000 0.00 0.00 43.11 4.26
496 497 1.751351 GTTTTTCTGCTCCCCCATAGC 59.249 52.381 0.00 0.00 40.50 2.97
497 498 3.085952 TGTTTTTCTGCTCCCCCATAG 57.914 47.619 0.00 0.00 0.00 2.23
498 499 3.075283 TCTTGTTTTTCTGCTCCCCCATA 59.925 43.478 0.00 0.00 0.00 2.74
499 500 2.158325 TCTTGTTTTTCTGCTCCCCCAT 60.158 45.455 0.00 0.00 0.00 4.00
500 501 1.216678 TCTTGTTTTTCTGCTCCCCCA 59.783 47.619 0.00 0.00 0.00 4.96
501 502 1.889170 CTCTTGTTTTTCTGCTCCCCC 59.111 52.381 0.00 0.00 0.00 5.40
502 503 1.889170 CCTCTTGTTTTTCTGCTCCCC 59.111 52.381 0.00 0.00 0.00 4.81
503 504 1.270826 GCCTCTTGTTTTTCTGCTCCC 59.729 52.381 0.00 0.00 0.00 4.30
504 505 1.956477 TGCCTCTTGTTTTTCTGCTCC 59.044 47.619 0.00 0.00 0.00 4.70
505 506 2.606551 GCTGCCTCTTGTTTTTCTGCTC 60.607 50.000 0.00 0.00 0.00 4.26
506 507 1.339291 GCTGCCTCTTGTTTTTCTGCT 59.661 47.619 0.00 0.00 0.00 4.24
507 508 1.775869 GCTGCCTCTTGTTTTTCTGC 58.224 50.000 0.00 0.00 0.00 4.26
508 509 1.335324 CCGCTGCCTCTTGTTTTTCTG 60.335 52.381 0.00 0.00 0.00 3.02
509 510 0.954452 CCGCTGCCTCTTGTTTTTCT 59.046 50.000 0.00 0.00 0.00 2.52
510 511 0.668535 ACCGCTGCCTCTTGTTTTTC 59.331 50.000 0.00 0.00 0.00 2.29
511 512 1.111277 AACCGCTGCCTCTTGTTTTT 58.889 45.000 0.00 0.00 0.00 1.94
512 513 1.111277 AAACCGCTGCCTCTTGTTTT 58.889 45.000 0.00 0.00 0.00 2.43
513 514 1.111277 AAAACCGCTGCCTCTTGTTT 58.889 45.000 0.00 0.00 0.00 2.83
514 515 1.067060 GAAAAACCGCTGCCTCTTGTT 59.933 47.619 0.00 0.00 0.00 2.83
515 516 0.668535 GAAAAACCGCTGCCTCTTGT 59.331 50.000 0.00 0.00 0.00 3.16
516 517 0.039165 GGAAAAACCGCTGCCTCTTG 60.039 55.000 0.00 0.00 0.00 3.02
517 518 0.467290 TGGAAAAACCGCTGCCTCTT 60.467 50.000 0.00 0.00 42.61 2.85
518 519 1.150536 TGGAAAAACCGCTGCCTCT 59.849 52.632 0.00 0.00 42.61 3.69
519 520 1.285950 GTGGAAAAACCGCTGCCTC 59.714 57.895 0.00 0.00 44.93 4.70
520 521 3.443588 GTGGAAAAACCGCTGCCT 58.556 55.556 0.00 0.00 44.93 4.75
526 527 1.655959 CGCCGTTGTGGAAAAACCG 60.656 57.895 0.00 0.00 42.00 4.44
527 528 0.317519 CTCGCCGTTGTGGAAAAACC 60.318 55.000 0.00 0.00 42.00 3.27
528 529 0.317519 CCTCGCCGTTGTGGAAAAAC 60.318 55.000 0.00 0.00 42.00 2.43
529 530 1.448922 CCCTCGCCGTTGTGGAAAAA 61.449 55.000 0.00 0.00 42.00 1.94
530 531 1.894756 CCCTCGCCGTTGTGGAAAA 60.895 57.895 0.00 0.00 42.00 2.29
531 532 2.281208 CCCTCGCCGTTGTGGAAA 60.281 61.111 0.00 0.00 42.00 3.13
532 533 4.323477 CCCCTCGCCGTTGTGGAA 62.323 66.667 0.00 0.00 42.00 3.53
550 551 3.793144 GACTTCTTGCCGCCGCTG 61.793 66.667 0.00 0.00 35.36 5.18
553 554 3.181967 CTCGACTTCTTGCCGCCG 61.182 66.667 0.00 0.00 0.00 6.46
554 555 3.491652 GCTCGACTTCTTGCCGCC 61.492 66.667 0.00 0.00 0.00 6.13
555 556 3.843240 CGCTCGACTTCTTGCCGC 61.843 66.667 0.00 0.00 0.00 6.53
556 557 2.430921 ACGCTCGACTTCTTGCCG 60.431 61.111 0.00 0.00 0.00 5.69
557 558 2.437343 CGACGCTCGACTTCTTGCC 61.437 63.158 0.00 0.00 43.74 4.52
558 559 3.060663 GCGACGCTCGACTTCTTGC 62.061 63.158 13.73 0.00 43.74 4.01
559 560 2.768920 CGCGACGCTCGACTTCTTG 61.769 63.158 19.02 0.00 43.74 3.02
560 561 2.502080 CGCGACGCTCGACTTCTT 60.502 61.111 19.02 0.00 43.74 2.52
561 562 4.462417 CCGCGACGCTCGACTTCT 62.462 66.667 19.02 0.00 43.74 2.85
562 563 4.755614 ACCGCGACGCTCGACTTC 62.756 66.667 19.02 0.00 43.74 3.01
668 669 2.716017 CGGCCAGAGGAGTGGTCTC 61.716 68.421 2.24 0.00 40.36 3.36
669 670 2.681778 CGGCCAGAGGAGTGGTCT 60.682 66.667 2.24 0.00 40.36 3.85
670 671 4.459089 GCGGCCAGAGGAGTGGTC 62.459 72.222 2.24 0.00 40.09 4.02
673 674 3.790437 ATGGCGGCCAGAGGAGTG 61.790 66.667 27.62 0.00 36.75 3.51
674 675 3.790437 CATGGCGGCCAGAGGAGT 61.790 66.667 27.62 6.26 36.75 3.85
725 726 4.641645 TGAACTGGGTGCCGCCAG 62.642 66.667 5.37 5.37 39.65 4.85
726 727 4.641645 CTGAACTGGGTGCCGCCA 62.642 66.667 0.00 0.00 39.65 5.69
735 736 3.726517 CAACGGCCGCTGAACTGG 61.727 66.667 28.58 0.00 0.00 4.00
736 737 4.389576 GCAACGGCCGCTGAACTG 62.390 66.667 31.66 16.56 0.00 3.16
747 748 4.817063 CATCTTGCGGCGCAACGG 62.817 66.667 40.01 30.89 43.99 4.44
755 756 3.803082 CACCGTGGCATCTTGCGG 61.803 66.667 11.43 11.43 46.21 5.69
756 757 3.803082 CCACCGTGGCATCTTGCG 61.803 66.667 4.16 0.00 46.21 4.85
757 758 2.359850 TCCACCGTGGCATCTTGC 60.360 61.111 13.19 0.00 44.08 4.01
758 759 1.746615 CCTCCACCGTGGCATCTTG 60.747 63.158 13.19 0.00 37.47 3.02
759 760 1.918293 TCCTCCACCGTGGCATCTT 60.918 57.895 13.19 0.00 37.47 2.40
760 761 2.284625 TCCTCCACCGTGGCATCT 60.285 61.111 13.19 0.00 37.47 2.90
761 762 2.125106 GTCCTCCACCGTGGCATC 60.125 66.667 13.19 0.00 37.47 3.91
762 763 3.717294 GGTCCTCCACCGTGGCAT 61.717 66.667 13.19 0.00 37.47 4.40
781 782 2.032681 GCTGGACTGGTCACCACC 59.967 66.667 0.00 0.00 44.10 4.61
782 783 2.357517 CGCTGGACTGGTCACCAC 60.358 66.667 0.00 0.00 32.44 4.16
783 784 3.625897 CCGCTGGACTGGTCACCA 61.626 66.667 0.00 0.00 34.81 4.17
803 804 1.882623 GCTACCAATTCTAGCCATGGC 59.117 52.381 30.12 30.12 42.33 4.40
804 805 3.498774 AGCTACCAATTCTAGCCATGG 57.501 47.619 7.63 7.63 37.88 3.66
805 806 5.474578 TCTAGCTACCAATTCTAGCCATG 57.525 43.478 7.71 0.00 37.88 3.66
806 807 6.694445 ATTCTAGCTACCAATTCTAGCCAT 57.306 37.500 7.71 0.00 37.88 4.40
807 808 6.291377 CAATTCTAGCTACCAATTCTAGCCA 58.709 40.000 7.71 0.00 37.88 4.75
808 809 5.180304 GCAATTCTAGCTACCAATTCTAGCC 59.820 44.000 7.71 0.00 37.88 3.93
809 810 5.180304 GGCAATTCTAGCTACCAATTCTAGC 59.820 44.000 0.00 4.16 37.48 3.42
810 811 6.426328 CAGGCAATTCTAGCTACCAATTCTAG 59.574 42.308 0.00 0.00 33.04 2.43
811 812 6.126768 ACAGGCAATTCTAGCTACCAATTCTA 60.127 38.462 0.00 0.00 0.00 2.10
812 813 5.128919 CAGGCAATTCTAGCTACCAATTCT 58.871 41.667 0.00 0.00 0.00 2.40
813 814 4.884164 ACAGGCAATTCTAGCTACCAATTC 59.116 41.667 0.00 0.00 0.00 2.17
814 815 4.641989 CACAGGCAATTCTAGCTACCAATT 59.358 41.667 0.00 0.00 0.00 2.32
815 816 4.202441 CACAGGCAATTCTAGCTACCAAT 58.798 43.478 0.00 0.00 0.00 3.16
816 817 3.609853 CACAGGCAATTCTAGCTACCAA 58.390 45.455 0.00 0.00 0.00 3.67
817 818 2.092968 CCACAGGCAATTCTAGCTACCA 60.093 50.000 0.00 0.00 0.00 3.25
818 819 2.170607 TCCACAGGCAATTCTAGCTACC 59.829 50.000 0.00 0.00 0.00 3.18
831 832 1.821136 CTTCATTTCCCTTCCACAGGC 59.179 52.381 0.00 0.00 42.29 4.85
843 844 6.681368 GCCATGTAAGATCCAACCTTCATTTC 60.681 42.308 0.00 0.00 0.00 2.17
856 857 3.281727 TCCACAAGGCCATGTAAGATC 57.718 47.619 14.30 0.00 33.74 2.75
860 861 1.824230 GCAATCCACAAGGCCATGTAA 59.176 47.619 14.30 5.54 33.74 2.41
862 863 0.542467 TGCAATCCACAAGGCCATGT 60.542 50.000 8.06 8.06 33.74 3.21
864 865 0.251922 ACTGCAATCCACAAGGCCAT 60.252 50.000 5.01 0.00 33.74 4.40
866 867 1.588082 CACTGCAATCCACAAGGCC 59.412 57.895 0.00 0.00 33.74 5.19
867 868 1.080298 GCACTGCAATCCACAAGGC 60.080 57.895 0.00 0.00 33.74 4.35
868 869 1.210931 CGCACTGCAATCCACAAGG 59.789 57.895 1.11 0.00 0.00 3.61
947 982 1.210931 CATGGAACGCAGTGCTTGG 59.789 57.895 14.33 0.00 45.00 3.61
1007 1042 0.524414 CGTGTAGACGTCCACCATGA 59.476 55.000 13.01 0.00 40.91 3.07
1009 1044 0.896940 ACCGTGTAGACGTCCACCAT 60.897 55.000 13.01 1.18 44.54 3.55
1019 1054 1.228769 AGGCACTCCACCGTGTAGA 60.229 57.895 0.00 0.00 37.24 2.59
1057 1092 2.106332 GTAGGCCATGGACGTCGG 59.894 66.667 18.40 6.54 0.00 4.79
1207 1260 1.369625 GATTTGGCCACCTCGTACTG 58.630 55.000 3.88 0.00 0.00 2.74
1282 1338 0.179018 GCCAGGAGGAACACACAGTT 60.179 55.000 0.00 0.00 44.93 3.16
1283 1339 1.451936 GCCAGGAGGAACACACAGT 59.548 57.895 0.00 0.00 36.89 3.55
1285 1341 2.836154 GGCCAGGAGGAACACACA 59.164 61.111 0.00 0.00 36.89 3.72
1350 1412 2.677003 CGCGTTGCCCCTAACACAG 61.677 63.158 0.00 0.00 0.00 3.66
1353 1415 1.669760 CTTCGCGTTGCCCCTAACA 60.670 57.895 5.77 0.00 0.00 2.41
1356 1418 4.770874 GGCTTCGCGTTGCCCCTA 62.771 66.667 26.13 0.00 43.11 3.53
1638 6498 7.226720 CAGCTACGACAATGACCCTAATAAAAT 59.773 37.037 0.00 0.00 0.00 1.82
2153 7044 4.655963 AGGACGAGTAGTGTAGTTGGTAA 58.344 43.478 0.00 0.00 0.00 2.85
2312 7203 7.534239 GCTTAATGTTTTAGTCACTCCTTTTCG 59.466 37.037 0.00 0.00 0.00 3.46
2318 7209 4.094442 CCGGCTTAATGTTTTAGTCACTCC 59.906 45.833 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.