Multiple sequence alignment - TraesCS3A01G065700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G065700 chr3A 100.000 1806 0 0 1740 3545 38621892 38623697 0.000000e+00 3336.0
1 TraesCS3A01G065700 chr3A 100.000 1330 0 0 1 1330 38620153 38621482 0.000000e+00 2457.0
2 TraesCS3A01G065700 chr3A 81.486 740 118 13 1805 2534 17258190 17257460 1.100000e-164 590.0
3 TraesCS3A01G065700 chr3B 91.812 916 49 9 1794 2708 49867263 49866373 0.000000e+00 1253.0
4 TraesCS3A01G065700 chr3B 89.738 955 56 13 1794 2740 50021167 50022087 0.000000e+00 1182.0
5 TraesCS3A01G065700 chr3B 82.237 760 105 18 1802 2538 12181385 12180633 2.320000e-176 628.0
6 TraesCS3A01G065700 chr3B 87.646 429 32 11 883 1306 50020721 50021133 2.480000e-131 479.0
7 TraesCS3A01G065700 chr3B 78.331 743 138 17 1815 2540 14112203 14111467 3.220000e-125 459.0
8 TraesCS3A01G065700 chr3B 83.565 432 69 2 41 471 99115374 99114944 1.530000e-108 403.0
9 TraesCS3A01G065700 chr3B 84.597 409 37 13 2821 3219 50020064 50019672 2.000000e-102 383.0
10 TraesCS3A01G065700 chr3B 88.930 271 27 1 1028 1298 49867574 49867307 7.340000e-87 331.0
11 TraesCS3A01G065700 chr3B 88.166 169 18 1 3375 3543 50019518 50019352 2.160000e-47 200.0
12 TraesCS3A01G065700 chr3B 83.412 211 24 4 467 677 49868073 49867874 6.040000e-43 185.0
13 TraesCS3A01G065700 chr3B 78.571 308 38 16 1001 1300 12401270 12400983 1.010000e-40 178.0
14 TraesCS3A01G065700 chr3B 78.571 308 38 16 1001 1300 28082494 28082207 1.010000e-40 178.0
15 TraesCS3A01G065700 chr3B 81.132 159 5 5 720 856 50020306 50020151 1.740000e-18 104.0
16 TraesCS3A01G065700 chr3B 88.679 53 6 0 1233 1285 11924592 11924644 8.210000e-07 65.8
17 TraesCS3A01G065700 chr3D 92.814 835 41 8 1764 2588 29308866 29308041 0.000000e+00 1192.0
18 TraesCS3A01G065700 chr3D 89.727 915 63 12 1764 2672 29281982 29282871 0.000000e+00 1140.0
19 TraesCS3A01G065700 chr3D 81.311 717 117 9 1837 2540 9881582 9880870 1.850000e-157 566.0
20 TraesCS3A01G065700 chr3D 83.438 634 45 27 720 1306 29309480 29308860 5.210000e-148 534.0
21 TraesCS3A01G065700 chr3D 90.182 275 20 5 1024 1298 29281715 29281982 5.630000e-93 351.0
22 TraesCS3A01G065700 chr3D 80.780 359 30 19 627 960 29281376 29281720 9.830000e-61 244.0
23 TraesCS3A01G065700 chr3D 82.609 230 16 9 2766 2992 29307956 29307748 7.820000e-42 182.0
24 TraesCS3A01G065700 chr3D 78.067 269 28 13 2781 3033 29282866 29283119 1.330000e-29 141.0
25 TraesCS3A01G065700 chrUn 81.551 748 115 11 1807 2536 35452030 35451288 2.360000e-166 595.0
26 TraesCS3A01G065700 chrUn 79.870 308 33 16 1001 1302 35452370 35452086 7.760000e-47 198.0
27 TraesCS3A01G065700 chr6D 89.375 480 37 4 1 466 460079739 460080218 3.050000e-165 592.0
28 TraesCS3A01G065700 chr2D 89.286 476 40 3 1 466 73411662 73411188 1.420000e-163 586.0
29 TraesCS3A01G065700 chr1A 88.075 478 47 2 1 468 549279894 549280371 3.090000e-155 558.0
30 TraesCS3A01G065700 chr6B 85.983 478 56 3 1 468 707204091 707204567 5.280000e-138 501.0
31 TraesCS3A01G065700 chr6B 85.774 478 58 2 1 468 514116841 514117318 6.830000e-137 497.0
32 TraesCS3A01G065700 chr1B 86.073 438 59 1 33 468 375858203 375858640 1.490000e-128 470.0
33 TraesCS3A01G065700 chr4A 84.100 478 66 2 1 468 602392783 602393260 1.500000e-123 453.0
34 TraesCS3A01G065700 chr7B 84.055 439 66 3 33 468 110341391 110341828 1.520000e-113 420.0
35 TraesCS3A01G065700 chr7D 88.679 53 6 0 1233 1285 42196970 42196918 8.210000e-07 65.8
36 TraesCS3A01G065700 chr2B 88.235 51 3 2 2908 2955 493445013 493444963 1.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G065700 chr3A 38620153 38623697 3544 False 2896.500000 3336 100.000000 1 3545 2 chr3A.!!$F1 3544
1 TraesCS3A01G065700 chr3A 17257460 17258190 730 True 590.000000 590 81.486000 1805 2534 1 chr3A.!!$R1 729
2 TraesCS3A01G065700 chr3B 50020721 50022087 1366 False 830.500000 1182 88.692000 883 2740 2 chr3B.!!$F2 1857
3 TraesCS3A01G065700 chr3B 12180633 12181385 752 True 628.000000 628 82.237000 1802 2538 1 chr3B.!!$R1 736
4 TraesCS3A01G065700 chr3B 49866373 49868073 1700 True 589.666667 1253 88.051333 467 2708 3 chr3B.!!$R6 2241
5 TraesCS3A01G065700 chr3B 14111467 14112203 736 True 459.000000 459 78.331000 1815 2540 1 chr3B.!!$R3 725
6 TraesCS3A01G065700 chr3B 50019352 50020306 954 True 229.000000 383 84.631667 720 3543 3 chr3B.!!$R7 2823
7 TraesCS3A01G065700 chr3D 29307748 29309480 1732 True 636.000000 1192 86.287000 720 2992 3 chr3D.!!$R2 2272
8 TraesCS3A01G065700 chr3D 9880870 9881582 712 True 566.000000 566 81.311000 1837 2540 1 chr3D.!!$R1 703
9 TraesCS3A01G065700 chr3D 29281376 29283119 1743 False 469.000000 1140 84.689000 627 3033 4 chr3D.!!$F1 2406
10 TraesCS3A01G065700 chrUn 35451288 35452370 1082 True 396.500000 595 80.710500 1001 2536 2 chrUn.!!$R1 1535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.035630 CCTCCTCCTTGGTTCTGCAG 60.036 60.0 7.63 7.63 37.07 4.41 F
422 423 0.037232 ATTATAGAGGAAGGCGCGGC 60.037 55.0 27.06 27.06 0.00 6.53 F
781 848 0.038166 TTCAGGCAAAAGGCTCGGAT 59.962 50.0 0.00 0.00 44.01 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1898 0.307760 CCGGAGTGTGCAAGAAACAC 59.692 55.000 0.00 0.0 46.70 3.32 R
2425 2606 2.125673 CGGTTCGTCCAAGGCGAT 60.126 61.111 6.49 0.0 38.21 4.58 R
2588 2782 1.452110 CATGGATTGGAGCACGAACA 58.548 50.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.897423 TGCCACATAGTGACCTCCG 59.103 57.895 0.00 0.00 35.23 4.63
19 20 0.902984 TGCCACATAGTGACCTCCGT 60.903 55.000 0.00 0.00 35.23 4.69
20 21 1.108776 GCCACATAGTGACCTCCGTA 58.891 55.000 0.00 0.00 35.23 4.02
21 22 1.687123 GCCACATAGTGACCTCCGTAT 59.313 52.381 0.00 0.00 35.23 3.06
22 23 2.288273 GCCACATAGTGACCTCCGTATC 60.288 54.545 0.00 0.00 35.23 2.24
23 24 2.296471 CCACATAGTGACCTCCGTATCC 59.704 54.545 0.00 0.00 35.23 2.59
24 25 2.031069 CACATAGTGACCTCCGTATCCG 60.031 54.545 0.00 0.00 35.23 4.18
25 26 2.228059 CATAGTGACCTCCGTATCCGT 58.772 52.381 0.00 0.00 0.00 4.69
26 27 3.181451 ACATAGTGACCTCCGTATCCGTA 60.181 47.826 0.00 0.00 0.00 4.02
27 28 1.964552 AGTGACCTCCGTATCCGTAG 58.035 55.000 0.00 0.00 0.00 3.51
28 29 0.310232 GTGACCTCCGTATCCGTAGC 59.690 60.000 0.00 0.00 0.00 3.58
29 30 1.162181 TGACCTCCGTATCCGTAGCG 61.162 60.000 0.00 0.00 0.00 4.26
30 31 1.153086 ACCTCCGTATCCGTAGCGT 60.153 57.895 0.00 0.00 0.00 5.07
31 32 1.281960 CCTCCGTATCCGTAGCGTG 59.718 63.158 0.00 0.00 0.00 5.34
32 33 1.281960 CTCCGTATCCGTAGCGTGG 59.718 63.158 0.00 0.00 0.00 4.94
33 34 2.126417 CTCCGTATCCGTAGCGTGGG 62.126 65.000 0.00 0.00 0.00 4.61
34 35 2.333938 CGTATCCGTAGCGTGGGG 59.666 66.667 0.00 0.00 0.00 4.96
35 36 2.028631 GTATCCGTAGCGTGGGGC 59.971 66.667 0.00 0.00 44.05 5.80
75 76 3.558411 GCACGACAGCCAGCGATC 61.558 66.667 0.00 0.00 0.00 3.69
76 77 3.250323 CACGACAGCCAGCGATCG 61.250 66.667 11.69 11.69 40.39 3.69
77 78 3.440415 ACGACAGCCAGCGATCGA 61.440 61.111 21.57 0.00 37.97 3.59
78 79 2.202610 CGACAGCCAGCGATCGAA 60.203 61.111 21.57 0.00 36.70 3.71
79 80 2.508891 CGACAGCCAGCGATCGAAC 61.509 63.158 21.57 1.19 36.70 3.95
80 81 2.125512 ACAGCCAGCGATCGAACC 60.126 61.111 21.57 0.32 0.00 3.62
81 82 2.125552 CAGCCAGCGATCGAACCA 60.126 61.111 21.57 0.00 0.00 3.67
82 83 2.169789 CAGCCAGCGATCGAACCAG 61.170 63.158 21.57 2.92 0.00 4.00
83 84 2.184322 GCCAGCGATCGAACCAGA 59.816 61.111 21.57 0.00 0.00 3.86
84 85 1.447838 GCCAGCGATCGAACCAGAA 60.448 57.895 21.57 0.00 0.00 3.02
85 86 1.424493 GCCAGCGATCGAACCAGAAG 61.424 60.000 21.57 0.00 0.00 2.85
86 87 0.807667 CCAGCGATCGAACCAGAAGG 60.808 60.000 21.57 3.87 42.21 3.46
87 88 0.173481 CAGCGATCGAACCAGAAGGA 59.827 55.000 21.57 0.00 38.69 3.36
88 89 0.173708 AGCGATCGAACCAGAAGGAC 59.826 55.000 21.57 0.00 38.69 3.85
89 90 1.140407 GCGATCGAACCAGAAGGACG 61.140 60.000 21.57 0.00 38.69 4.79
90 91 0.170561 CGATCGAACCAGAAGGACGT 59.829 55.000 10.26 0.00 38.52 4.34
91 92 1.794437 CGATCGAACCAGAAGGACGTC 60.794 57.143 10.26 7.13 38.52 4.34
92 93 0.531200 ATCGAACCAGAAGGACGTCC 59.469 55.000 27.67 27.67 38.52 4.79
93 94 1.443872 CGAACCAGAAGGACGTCCG 60.444 63.158 28.26 16.28 42.08 4.79
94 95 1.664306 GAACCAGAAGGACGTCCGT 59.336 57.895 28.26 26.01 42.08 4.69
95 96 0.388263 GAACCAGAAGGACGTCCGTC 60.388 60.000 34.71 34.71 43.53 4.79
96 97 2.138656 AACCAGAAGGACGTCCGTCG 62.139 60.000 34.70 28.93 46.92 5.12
121 122 4.712425 CGGACCACCACCGTCGTC 62.712 72.222 0.00 0.00 44.57 4.20
122 123 3.608662 GGACCACCACCGTCGTCA 61.609 66.667 0.00 0.00 32.25 4.35
123 124 2.049433 GACCACCACCGTCGTCAG 60.049 66.667 0.00 0.00 31.11 3.51
124 125 2.520020 ACCACCACCGTCGTCAGA 60.520 61.111 0.00 0.00 0.00 3.27
125 126 2.049433 CCACCACCGTCGTCAGAC 60.049 66.667 0.00 0.00 43.72 3.51
126 127 2.049433 CACCACCGTCGTCAGACC 60.049 66.667 0.00 0.00 44.28 3.85
127 128 3.667282 ACCACCGTCGTCAGACCG 61.667 66.667 0.00 0.00 44.28 4.79
132 133 3.792047 CGTCGTCAGACCGCGGTA 61.792 66.667 34.36 14.19 44.28 4.02
133 134 2.099831 GTCGTCAGACCGCGGTAG 59.900 66.667 34.36 26.49 41.41 3.18
134 135 2.046988 TCGTCAGACCGCGGTAGA 60.047 61.111 34.36 28.41 0.00 2.59
135 136 2.104859 TCGTCAGACCGCGGTAGAG 61.105 63.158 34.36 23.38 0.00 2.43
136 137 2.102553 GTCAGACCGCGGTAGAGC 59.897 66.667 34.36 19.46 0.00 4.09
154 155 1.508088 CGGGAGCATTTTGGACAGC 59.492 57.895 0.00 0.00 0.00 4.40
155 156 1.508088 GGGAGCATTTTGGACAGCG 59.492 57.895 0.00 0.00 0.00 5.18
156 157 0.960364 GGGAGCATTTTGGACAGCGA 60.960 55.000 0.00 0.00 0.00 4.93
157 158 0.169009 GGAGCATTTTGGACAGCGAC 59.831 55.000 0.00 0.00 0.00 5.19
158 159 1.160137 GAGCATTTTGGACAGCGACT 58.840 50.000 0.00 0.00 0.00 4.18
159 160 1.537202 GAGCATTTTGGACAGCGACTT 59.463 47.619 0.00 0.00 0.00 3.01
160 161 1.267806 AGCATTTTGGACAGCGACTTG 59.732 47.619 0.00 0.00 0.00 3.16
161 162 1.689959 CATTTTGGACAGCGACTTGC 58.310 50.000 0.00 0.00 46.98 4.01
183 184 3.006728 CTCCCGGGCCAACAGGTA 61.007 66.667 18.49 0.00 31.79 3.08
184 185 3.006728 TCCCGGGCCAACAGGTAG 61.007 66.667 18.49 0.00 31.79 3.18
185 186 4.796495 CCCGGGCCAACAGGTAGC 62.796 72.222 8.08 0.00 31.79 3.58
186 187 4.796495 CCGGGCCAACAGGTAGCC 62.796 72.222 4.39 5.13 46.37 3.93
189 190 4.029809 GGCCAACAGGTAGCCCGT 62.030 66.667 0.00 0.00 41.00 5.28
190 191 2.746277 GCCAACAGGTAGCCCGTG 60.746 66.667 0.00 0.00 35.12 4.94
191 192 2.046314 CCAACAGGTAGCCCGTGG 60.046 66.667 0.00 0.00 35.12 4.94
234 235 4.033776 CTCCGCCCACACCCACAT 62.034 66.667 0.00 0.00 0.00 3.21
235 236 3.976701 CTCCGCCCACACCCACATC 62.977 68.421 0.00 0.00 0.00 3.06
240 241 4.343323 CCACACCCACATCGCCCA 62.343 66.667 0.00 0.00 0.00 5.36
241 242 3.055719 CACACCCACATCGCCCAC 61.056 66.667 0.00 0.00 0.00 4.61
242 243 4.344865 ACACCCACATCGCCCACC 62.345 66.667 0.00 0.00 0.00 4.61
268 269 3.785859 GTGGGAGCCGCATGGAGA 61.786 66.667 0.00 0.00 37.49 3.71
269 270 3.785859 TGGGAGCCGCATGGAGAC 61.786 66.667 0.00 0.00 37.49 3.36
281 282 2.369654 TGGAGACAGTGCAGCATCT 58.630 52.632 0.00 0.00 35.01 2.90
282 283 0.689055 TGGAGACAGTGCAGCATCTT 59.311 50.000 0.00 0.00 35.01 2.40
283 284 1.085091 GGAGACAGTGCAGCATCTTG 58.915 55.000 0.00 0.32 0.00 3.02
284 285 1.338484 GGAGACAGTGCAGCATCTTGA 60.338 52.381 0.00 0.00 0.00 3.02
285 286 2.630158 GAGACAGTGCAGCATCTTGAT 58.370 47.619 0.00 0.00 0.00 2.57
286 287 2.608546 GAGACAGTGCAGCATCTTGATC 59.391 50.000 0.00 0.00 0.00 2.92
287 288 2.027469 AGACAGTGCAGCATCTTGATCA 60.027 45.455 0.00 0.00 0.00 2.92
288 289 2.745821 GACAGTGCAGCATCTTGATCAA 59.254 45.455 8.12 8.12 0.00 2.57
289 290 2.747989 ACAGTGCAGCATCTTGATCAAG 59.252 45.455 26.56 26.56 39.71 3.02
299 300 3.616956 TCTTGATCAAGAAGCACCGAT 57.383 42.857 31.25 0.00 43.79 4.18
300 301 3.942829 TCTTGATCAAGAAGCACCGATT 58.057 40.909 31.25 0.00 43.79 3.34
301 302 4.326826 TCTTGATCAAGAAGCACCGATTT 58.673 39.130 31.25 0.00 43.79 2.17
302 303 4.761739 TCTTGATCAAGAAGCACCGATTTT 59.238 37.500 31.25 0.00 43.79 1.82
303 304 4.424061 TGATCAAGAAGCACCGATTTTG 57.576 40.909 0.00 0.00 0.00 2.44
304 305 2.704725 TCAAGAAGCACCGATTTTGC 57.295 45.000 0.00 0.00 40.52 3.68
305 306 1.069296 TCAAGAAGCACCGATTTTGCG 60.069 47.619 0.00 0.00 45.15 4.85
306 307 0.951558 AAGAAGCACCGATTTTGCGT 59.048 45.000 0.00 0.00 45.15 5.24
307 308 0.517316 AGAAGCACCGATTTTGCGTC 59.483 50.000 2.54 2.54 45.49 5.19
308 309 0.789383 GAAGCACCGATTTTGCGTCG 60.789 55.000 0.00 0.00 45.15 5.12
309 310 2.780149 AAGCACCGATTTTGCGTCGC 62.780 55.000 11.10 11.10 45.15 5.19
310 311 2.570581 CACCGATTTTGCGTCGCG 60.571 61.111 13.38 0.00 37.75 5.87
311 312 2.735478 ACCGATTTTGCGTCGCGA 60.735 55.556 13.38 3.71 37.75 5.87
312 313 2.020016 CCGATTTTGCGTCGCGAG 59.980 61.111 10.24 4.96 37.75 5.03
313 314 2.020016 CGATTTTGCGTCGCGAGG 59.980 61.111 23.63 23.63 31.85 4.63
314 315 2.726691 CGATTTTGCGTCGCGAGGT 61.727 57.895 27.37 9.51 31.85 3.85
315 316 1.058903 GATTTTGCGTCGCGAGGTC 59.941 57.895 27.37 19.96 0.00 3.85
316 317 2.292802 GATTTTGCGTCGCGAGGTCC 62.293 60.000 27.37 14.00 0.00 4.46
326 327 4.308458 CGAGGTCCCGCACACCAA 62.308 66.667 0.00 0.00 36.23 3.67
327 328 2.358737 GAGGTCCCGCACACCAAG 60.359 66.667 0.00 0.00 36.23 3.61
328 329 3.901797 GAGGTCCCGCACACCAAGG 62.902 68.421 0.00 0.00 36.23 3.61
343 344 4.767892 AGGGCCCCCTCCTCCTTG 62.768 72.222 21.43 0.00 44.43 3.61
346 347 2.941583 GCCCCCTCCTCCTTGGTT 60.942 66.667 0.00 0.00 37.07 3.67
347 348 2.985116 GCCCCCTCCTCCTTGGTTC 61.985 68.421 0.00 0.00 37.07 3.62
348 349 1.229984 CCCCCTCCTCCTTGGTTCT 60.230 63.158 0.00 0.00 37.07 3.01
349 350 1.566298 CCCCCTCCTCCTTGGTTCTG 61.566 65.000 0.00 0.00 37.07 3.02
350 351 1.301293 CCCTCCTCCTTGGTTCTGC 59.699 63.158 0.00 0.00 37.07 4.26
351 352 1.492133 CCCTCCTCCTTGGTTCTGCA 61.492 60.000 0.00 0.00 37.07 4.41
352 353 0.035630 CCTCCTCCTTGGTTCTGCAG 60.036 60.000 7.63 7.63 37.07 4.41
353 354 0.979665 CTCCTCCTTGGTTCTGCAGA 59.020 55.000 13.74 13.74 37.07 4.26
354 355 0.687354 TCCTCCTTGGTTCTGCAGAC 59.313 55.000 18.03 11.66 37.07 3.51
355 356 0.322008 CCTCCTTGGTTCTGCAGACC 60.322 60.000 18.03 20.31 0.00 3.85
356 357 0.322008 CTCCTTGGTTCTGCAGACCC 60.322 60.000 22.71 22.71 0.00 4.46
357 358 1.672356 CCTTGGTTCTGCAGACCCG 60.672 63.158 23.64 11.43 27.85 5.28
358 359 2.281484 TTGGTTCTGCAGACCCGC 60.281 61.111 23.64 11.17 27.85 6.13
359 360 2.738213 CTTGGTTCTGCAGACCCGCT 62.738 60.000 23.64 0.00 27.85 5.52
360 361 2.435059 GGTTCTGCAGACCCGCTC 60.435 66.667 18.03 3.02 0.00 5.03
361 362 2.435059 GTTCTGCAGACCCGCTCC 60.435 66.667 18.03 0.00 0.00 4.70
362 363 3.706373 TTCTGCAGACCCGCTCCC 61.706 66.667 18.03 0.00 0.00 4.30
364 365 4.463879 CTGCAGACCCGCTCCCAG 62.464 72.222 8.42 0.00 0.00 4.45
406 407 2.817834 GCACGGTCGGCAGCATTA 60.818 61.111 0.00 0.00 0.00 1.90
407 408 2.180204 GCACGGTCGGCAGCATTAT 61.180 57.895 0.00 0.00 0.00 1.28
408 409 0.878523 GCACGGTCGGCAGCATTATA 60.879 55.000 0.00 0.00 0.00 0.98
409 410 1.139989 CACGGTCGGCAGCATTATAG 58.860 55.000 0.00 0.00 0.00 1.31
410 411 1.037493 ACGGTCGGCAGCATTATAGA 58.963 50.000 0.00 0.00 0.00 1.98
411 412 1.000163 ACGGTCGGCAGCATTATAGAG 60.000 52.381 0.00 0.00 0.00 2.43
412 413 1.670087 CGGTCGGCAGCATTATAGAGG 60.670 57.143 0.00 0.00 0.00 3.69
413 414 1.618837 GGTCGGCAGCATTATAGAGGA 59.381 52.381 0.00 0.00 0.00 3.71
414 415 2.037251 GGTCGGCAGCATTATAGAGGAA 59.963 50.000 0.00 0.00 0.00 3.36
415 416 3.321497 GTCGGCAGCATTATAGAGGAAG 58.679 50.000 0.00 0.00 0.00 3.46
416 417 2.300152 TCGGCAGCATTATAGAGGAAGG 59.700 50.000 0.00 0.00 0.00 3.46
417 418 2.431454 GGCAGCATTATAGAGGAAGGC 58.569 52.381 0.00 0.00 33.89 4.35
418 419 2.072298 GCAGCATTATAGAGGAAGGCG 58.928 52.381 0.00 0.00 38.57 5.52
419 420 2.072298 CAGCATTATAGAGGAAGGCGC 58.928 52.381 0.00 0.00 38.57 6.53
420 421 1.071605 GCATTATAGAGGAAGGCGCG 58.928 55.000 0.00 0.00 0.00 6.86
421 422 1.714794 CATTATAGAGGAAGGCGCGG 58.285 55.000 8.83 0.00 0.00 6.46
422 423 0.037232 ATTATAGAGGAAGGCGCGGC 60.037 55.000 27.06 27.06 0.00 6.53
423 424 2.416244 TTATAGAGGAAGGCGCGGCG 62.416 60.000 27.74 19.62 0.00 6.46
437 438 4.021925 GGCGCAGGGAGTCCAACT 62.022 66.667 10.83 0.00 34.83 3.16
438 439 2.032681 GCGCAGGGAGTCCAACTT 59.967 61.111 12.30 0.00 34.83 2.66
439 440 1.600916 GCGCAGGGAGTCCAACTTT 60.601 57.895 12.30 0.00 34.83 2.66
440 441 1.172812 GCGCAGGGAGTCCAACTTTT 61.173 55.000 12.30 0.00 34.83 2.27
441 442 1.318576 CGCAGGGAGTCCAACTTTTT 58.681 50.000 12.30 0.00 34.83 1.94
442 443 1.001378 CGCAGGGAGTCCAACTTTTTG 60.001 52.381 12.30 0.00 34.83 2.44
443 444 2.306847 GCAGGGAGTCCAACTTTTTGA 58.693 47.619 12.30 0.00 34.24 2.69
444 445 2.294512 GCAGGGAGTCCAACTTTTTGAG 59.705 50.000 12.30 0.00 34.24 3.02
445 446 2.294512 CAGGGAGTCCAACTTTTTGAGC 59.705 50.000 12.30 0.00 34.24 4.26
446 447 2.091885 AGGGAGTCCAACTTTTTGAGCA 60.092 45.455 12.30 0.00 34.24 4.26
447 448 2.034685 GGGAGTCCAACTTTTTGAGCAC 59.965 50.000 12.30 0.00 34.24 4.40
448 449 2.034685 GGAGTCCAACTTTTTGAGCACC 59.965 50.000 3.60 0.00 34.24 5.01
449 450 1.676006 AGTCCAACTTTTTGAGCACCG 59.324 47.619 0.00 0.00 34.24 4.94
450 451 0.383949 TCCAACTTTTTGAGCACCGC 59.616 50.000 0.00 0.00 34.24 5.68
451 452 0.597377 CCAACTTTTTGAGCACCGCC 60.597 55.000 0.00 0.00 34.24 6.13
452 453 0.102120 CAACTTTTTGAGCACCGCCA 59.898 50.000 0.00 0.00 34.24 5.69
453 454 0.385390 AACTTTTTGAGCACCGCCAG 59.615 50.000 0.00 0.00 0.00 4.85
454 455 1.372128 CTTTTTGAGCACCGCCAGC 60.372 57.895 0.00 0.00 0.00 4.85
455 456 3.192954 TTTTTGAGCACCGCCAGCG 62.193 57.895 4.75 4.75 37.01 5.18
467 468 4.559063 CCAGCGGGAGGAGCATGG 62.559 72.222 0.00 0.00 37.01 3.66
468 469 3.790437 CAGCGGGAGGAGCATGGT 61.790 66.667 0.00 0.00 37.01 3.55
469 470 3.474570 AGCGGGAGGAGCATGGTC 61.475 66.667 16.65 16.65 37.01 4.02
470 471 4.899239 GCGGGAGGAGCATGGTCG 62.899 72.222 18.14 8.57 34.19 4.79
471 472 3.147595 CGGGAGGAGCATGGTCGA 61.148 66.667 18.14 0.00 0.00 4.20
472 473 2.721167 CGGGAGGAGCATGGTCGAA 61.721 63.158 18.14 0.00 0.00 3.71
473 474 1.832912 GGGAGGAGCATGGTCGAAT 59.167 57.895 18.14 7.17 0.00 3.34
474 475 0.250081 GGGAGGAGCATGGTCGAATC 60.250 60.000 18.14 14.88 0.00 2.52
481 482 3.003068 GGAGCATGGTCGAATCAGATTTG 59.997 47.826 18.14 4.11 0.00 2.32
515 516 4.024725 TCGTTTTACTTGGGTGTTTGATCG 60.025 41.667 0.00 0.00 0.00 3.69
557 558 0.613260 CGAAGTGGTTCCAGATCCCA 59.387 55.000 0.00 0.00 0.00 4.37
559 560 1.630878 GAAGTGGTTCCAGATCCCAGT 59.369 52.381 0.00 0.00 33.30 4.00
561 562 0.253327 GTGGTTCCAGATCCCAGTCC 59.747 60.000 0.00 0.00 0.00 3.85
565 566 2.024941 GGTTCCAGATCCCAGTCCAAAT 60.025 50.000 0.00 0.00 0.00 2.32
566 567 3.564352 GGTTCCAGATCCCAGTCCAAATT 60.564 47.826 0.00 0.00 0.00 1.82
569 570 4.344104 TCCAGATCCCAGTCCAAATTTTC 58.656 43.478 0.00 0.00 0.00 2.29
575 576 3.146066 CCCAGTCCAAATTTTCACGAGA 58.854 45.455 0.00 0.00 0.00 4.04
577 578 4.218417 CCCAGTCCAAATTTTCACGAGAAT 59.782 41.667 0.00 0.00 32.89 2.40
581 582 4.917415 GTCCAAATTTTCACGAGAATGGTG 59.083 41.667 11.20 2.44 46.96 4.17
582 583 4.022416 TCCAAATTTTCACGAGAATGGTGG 60.022 41.667 11.20 9.54 45.53 4.61
597 598 7.875041 CGAGAATGGTGGATTATTAGTGAGATT 59.125 37.037 0.00 0.00 0.00 2.40
602 603 8.964476 TGGTGGATTATTAGTGAGATTTTCTC 57.036 34.615 0.00 0.00 43.65 2.87
613 614 7.732222 AGTGAGATTTTCTCTGAAGGTATCT 57.268 36.000 6.13 0.00 43.73 1.98
614 615 7.555087 AGTGAGATTTTCTCTGAAGGTATCTG 58.445 38.462 6.13 0.00 43.73 2.90
615 616 7.398618 AGTGAGATTTTCTCTGAAGGTATCTGA 59.601 37.037 6.13 0.00 43.73 3.27
616 617 8.037758 GTGAGATTTTCTCTGAAGGTATCTGAA 58.962 37.037 6.13 0.00 43.73 3.02
617 618 8.256605 TGAGATTTTCTCTGAAGGTATCTGAAG 58.743 37.037 6.13 0.00 43.73 3.02
636 637 7.386851 TCTGAAGAGATGAGAAATAAAACGGT 58.613 34.615 0.00 0.00 0.00 4.83
637 638 7.331934 TCTGAAGAGATGAGAAATAAAACGGTG 59.668 37.037 0.00 0.00 0.00 4.94
655 656 3.438360 GGTGCAAATGATCAAATCGTCC 58.562 45.455 0.00 0.00 0.00 4.79
656 657 3.438360 GTGCAAATGATCAAATCGTCCC 58.562 45.455 0.00 0.00 0.00 4.46
673 674 0.179100 CCCACGAATCGTCAGAGCAT 60.179 55.000 4.88 0.00 38.32 3.79
683 684 1.585668 CGTCAGAGCATCGACATGTTC 59.414 52.381 0.00 0.00 42.67 3.18
722 771 2.821366 CAGACCGCAGTGCATCCC 60.821 66.667 16.83 0.72 0.00 3.85
781 848 0.038166 TTCAGGCAAAAGGCTCGGAT 59.962 50.000 0.00 0.00 44.01 4.18
853 936 1.739562 GAGCTCGGCAGTGAACAGG 60.740 63.158 0.00 0.00 0.00 4.00
856 939 1.569479 GCTCGGCAGTGAACAGGAAC 61.569 60.000 0.00 0.00 0.00 3.62
857 940 0.249868 CTCGGCAGTGAACAGGAACA 60.250 55.000 0.00 0.00 0.00 3.18
858 941 0.249868 TCGGCAGTGAACAGGAACAG 60.250 55.000 0.00 0.00 0.00 3.16
859 942 1.845809 CGGCAGTGAACAGGAACAGC 61.846 60.000 0.00 0.00 0.00 4.40
860 943 0.819259 GGCAGTGAACAGGAACAGCA 60.819 55.000 0.00 0.00 31.05 4.41
861 944 1.024271 GCAGTGAACAGGAACAGCAA 58.976 50.000 0.00 0.00 0.00 3.91
862 945 1.610522 GCAGTGAACAGGAACAGCAAT 59.389 47.619 0.00 0.00 0.00 3.56
863 946 2.813754 GCAGTGAACAGGAACAGCAATA 59.186 45.455 0.00 0.00 0.00 1.90
864 947 3.253188 GCAGTGAACAGGAACAGCAATAA 59.747 43.478 0.00 0.00 0.00 1.40
917 1036 1.222113 CCGAGCTCCCTTTTCCTCC 59.778 63.158 8.47 0.00 0.00 4.30
937 1056 0.906066 GTCCTCACTCCCTTCCCTTC 59.094 60.000 0.00 0.00 0.00 3.46
971 1095 0.601841 GAAAGGTTTCGCCGGAGACA 60.602 55.000 7.66 0.00 43.70 3.41
973 1097 2.434359 GGTTTCGCCGGAGACAGG 60.434 66.667 7.66 0.00 0.00 4.00
1110 1245 1.222387 GCTACCCAACGGCCATGTA 59.778 57.895 2.24 0.00 0.00 2.29
1130 1265 0.532573 AAGCAAGAAGAGATCGGCGA 59.467 50.000 13.87 13.87 38.00 5.54
1132 1267 0.179124 GCAAGAAGAGATCGGCGAGT 60.179 55.000 17.22 4.75 0.00 4.18
1142 1277 3.406361 CGGCGAGTATCATGCGGC 61.406 66.667 0.00 6.22 45.52 6.53
1174 1309 1.413767 CGACGGAGGAGCAATCGTTG 61.414 60.000 0.00 0.00 35.91 4.10
1297 1433 1.203237 TCCAGGTTCCTTGCTCTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
1298 1434 1.206849 CCAGGTTCCTTGCTCTCTCTC 59.793 57.143 0.00 0.00 0.00 3.20
1301 1437 2.042979 AGGTTCCTTGCTCTCTCTCTCT 59.957 50.000 0.00 0.00 0.00 3.10
1302 1438 2.427095 GGTTCCTTGCTCTCTCTCTCTC 59.573 54.545 0.00 0.00 0.00 3.20
1304 1440 3.281727 TCCTTGCTCTCTCTCTCTCTC 57.718 52.381 0.00 0.00 0.00 3.20
1305 1441 2.846206 TCCTTGCTCTCTCTCTCTCTCT 59.154 50.000 0.00 0.00 0.00 3.10
1308 1444 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
1311 1447 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
1312 1448 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
1316 1452 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1319 1455 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1320 1456 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1321 1457 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1322 1458 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1323 1459 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1324 1460 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1325 1461 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1326 1462 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
1327 1463 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
1328 1464 6.097554 TCTCTCTCTCTCTCTCTCTCTCTTTC 59.902 46.154 0.00 0.00 0.00 2.62
1329 1465 5.960811 TCTCTCTCTCTCTCTCTCTCTTTCT 59.039 44.000 0.00 0.00 0.00 2.52
1757 1893 3.314083 TGTGTGTGTGTGTGTGTGT 57.686 47.368 0.00 0.00 0.00 3.72
1758 1894 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1759 1895 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1760 1896 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1761 1897 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1762 1898 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1782 1922 1.282875 GTTTCTTGCACACTCCGGC 59.717 57.895 0.00 0.00 0.00 6.13
2178 2347 4.640690 AGCCAGGTCCCGGTGTCT 62.641 66.667 0.00 0.00 0.00 3.41
2339 2511 4.947147 GTGGGTGAACCTGCCGCA 62.947 66.667 0.00 0.00 41.11 5.69
2340 2512 4.196778 TGGGTGAACCTGCCGCAA 62.197 61.111 0.00 0.00 41.11 4.85
2575 2769 6.122964 TGATCGATCGATGTATCCCTTCTAT 58.877 40.000 33.86 6.57 34.60 1.98
2588 2782 7.839705 TGTATCCCTTCTATTACTGTCAGTTCT 59.160 37.037 11.54 1.57 0.00 3.01
2589 2783 6.531503 TCCCTTCTATTACTGTCAGTTCTG 57.468 41.667 11.54 0.14 0.00 3.02
2590 2784 6.017192 TCCCTTCTATTACTGTCAGTTCTGT 58.983 40.000 11.54 0.00 0.00 3.41
2591 2785 6.497259 TCCCTTCTATTACTGTCAGTTCTGTT 59.503 38.462 11.54 0.00 0.00 3.16
2592 2786 6.814146 CCCTTCTATTACTGTCAGTTCTGTTC 59.186 42.308 11.54 0.00 0.00 3.18
2593 2787 6.528423 CCTTCTATTACTGTCAGTTCTGTTCG 59.472 42.308 11.54 0.00 0.00 3.95
2594 2788 6.570672 TCTATTACTGTCAGTTCTGTTCGT 57.429 37.500 11.54 0.00 0.00 3.85
2595 2789 6.379386 TCTATTACTGTCAGTTCTGTTCGTG 58.621 40.000 11.54 0.00 0.00 4.35
2596 2790 1.571919 ACTGTCAGTTCTGTTCGTGC 58.428 50.000 0.00 0.00 0.00 5.34
2597 2791 1.137086 ACTGTCAGTTCTGTTCGTGCT 59.863 47.619 0.00 0.00 0.00 4.40
2598 2792 1.789464 CTGTCAGTTCTGTTCGTGCTC 59.211 52.381 0.00 0.00 0.00 4.26
2599 2793 1.140816 GTCAGTTCTGTTCGTGCTCC 58.859 55.000 0.00 0.00 0.00 4.70
2600 2794 0.750249 TCAGTTCTGTTCGTGCTCCA 59.250 50.000 0.00 0.00 0.00 3.86
2601 2795 1.138069 TCAGTTCTGTTCGTGCTCCAA 59.862 47.619 0.00 0.00 0.00 3.53
2637 2854 2.593026 TCCAGCTTAAACTGTTTGGGG 58.407 47.619 15.69 9.37 35.83 4.96
2638 2855 1.618343 CCAGCTTAAACTGTTTGGGGG 59.382 52.381 15.69 6.49 35.83 5.40
2639 2856 2.593026 CAGCTTAAACTGTTTGGGGGA 58.407 47.619 15.69 0.00 32.78 4.81
2640 2857 2.962421 CAGCTTAAACTGTTTGGGGGAA 59.038 45.455 15.69 1.08 32.78 3.97
2641 2858 3.386402 CAGCTTAAACTGTTTGGGGGAAA 59.614 43.478 15.69 0.40 32.78 3.13
2642 2859 4.034410 AGCTTAAACTGTTTGGGGGAAAA 58.966 39.130 15.69 0.00 0.00 2.29
2702 2919 4.495349 CGGATGAGCTGCAGTGAAATTTAG 60.495 45.833 16.64 0.00 0.00 1.85
2708 2925 3.609175 GCTGCAGTGAAATTTAGCGTGAA 60.609 43.478 16.64 0.00 0.00 3.18
2709 2926 4.145876 TGCAGTGAAATTTAGCGTGAAG 57.854 40.909 0.00 0.00 0.00 3.02
2723 2946 3.357897 GCGTGAAGCTAATTGCATCTTC 58.642 45.455 0.00 0.00 45.94 2.87
2776 2999 3.741476 CAGCCTTGCCTTGCCGTC 61.741 66.667 0.00 0.00 0.00 4.79
2842 3075 3.381983 GGGAAAGCTTTGCCCGGG 61.382 66.667 33.15 19.09 42.19 5.73
2856 3089 4.504916 CGGGCAGCCACTCGAGAG 62.505 72.222 21.68 11.80 0.00 3.20
2859 3092 2.183046 GCAGCCACTCGAGAGTCC 59.817 66.667 21.68 4.53 40.20 3.85
2885 3118 4.816984 TCCGTCGCCTCCTCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
2886 3119 4.824515 CCGTCGCCTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
2888 3121 2.835895 GTCGCCTCCTCCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
2889 3122 3.024356 TCGCCTCCTCCTCCTCCT 61.024 66.667 0.00 0.00 0.00 3.69
2896 3129 2.433994 CCTCCTCCTCCTCTGCTGC 61.434 68.421 0.00 0.00 0.00 5.25
2897 3130 1.381599 CTCCTCCTCCTCTGCTGCT 60.382 63.158 0.00 0.00 0.00 4.24
2898 3131 0.106268 CTCCTCCTCCTCTGCTGCTA 60.106 60.000 0.00 0.00 0.00 3.49
2899 3132 0.560193 TCCTCCTCCTCTGCTGCTAT 59.440 55.000 0.00 0.00 0.00 2.97
2900 3133 0.680618 CCTCCTCCTCTGCTGCTATG 59.319 60.000 0.00 0.00 0.00 2.23
2901 3134 1.702182 CTCCTCCTCTGCTGCTATGA 58.298 55.000 0.00 0.00 0.00 2.15
2955 3191 1.899437 CTTTAGCTCTGCCCCGTGGA 61.899 60.000 0.00 0.00 0.00 4.02
2956 3192 2.180159 TTTAGCTCTGCCCCGTGGAC 62.180 60.000 0.00 0.00 0.00 4.02
2959 3195 4.742201 CTCTGCCCCGTGGACGTG 62.742 72.222 0.00 0.00 37.74 4.49
2995 3243 1.072852 GCCTCCTCCATGCTCCATC 59.927 63.158 0.00 0.00 0.00 3.51
3001 3249 0.390492 CTCCATGCTCCATCGCTGTA 59.610 55.000 0.00 0.00 0.00 2.74
3033 3281 6.147821 GTCTTGCTGCTTCAGTGAAGTTATTA 59.852 38.462 28.95 14.22 41.27 0.98
3034 3282 6.881065 TCTTGCTGCTTCAGTGAAGTTATTAT 59.119 34.615 28.95 0.00 41.27 1.28
3035 3283 7.391554 TCTTGCTGCTTCAGTGAAGTTATTATT 59.608 33.333 28.95 0.00 41.27 1.40
3114 3362 4.143986 AGCAGCCATTTAAGTAGTCCTC 57.856 45.455 0.00 0.00 0.00 3.71
3146 3398 9.152595 AGTAGAATTTTCAGAGTACCGATTTTC 57.847 33.333 0.00 0.00 0.00 2.29
3148 3400 8.622948 AGAATTTTCAGAGTACCGATTTTCTT 57.377 30.769 0.00 0.00 0.00 2.52
3185 3437 7.282585 CCTTCTAGGAATGTTATTCCATGACA 58.717 38.462 19.55 0.00 41.00 3.58
3186 3438 7.941238 CCTTCTAGGAATGTTATTCCATGACAT 59.059 37.037 19.55 0.00 40.69 3.06
3188 3440 9.699410 TTCTAGGAATGTTATTCCATGACATTT 57.301 29.630 19.55 2.68 45.74 2.32
3189 3441 9.699410 TCTAGGAATGTTATTCCATGACATTTT 57.301 29.630 19.55 6.04 45.74 1.82
3219 3471 5.107143 GCAAGCACTTGAAACTTTTGTCAAA 60.107 36.000 14.44 0.00 42.93 2.69
3220 3472 6.402442 GCAAGCACTTGAAACTTTTGTCAAAT 60.402 34.615 14.44 0.00 42.93 2.32
3221 3473 7.201513 GCAAGCACTTGAAACTTTTGTCAAATA 60.202 33.333 14.44 0.00 42.93 1.40
3224 3476 9.382275 AGCACTTGAAACTTTTGTCAAATATTT 57.618 25.926 0.00 3.26 33.52 1.40
3243 3566 4.846779 TTTGTTCAGAACATACAAGCCC 57.153 40.909 16.89 0.00 41.79 5.19
3246 3569 0.392461 TCAGAACATACAAGCCCGCC 60.392 55.000 0.00 0.00 0.00 6.13
3266 3589 1.737793 CGGAAACTCCAATGTAGCACC 59.262 52.381 0.00 0.00 35.91 5.01
3267 3590 1.737793 GGAAACTCCAATGTAGCACCG 59.262 52.381 0.00 0.00 36.28 4.94
3269 3592 1.808411 AACTCCAATGTAGCACCGTG 58.192 50.000 0.00 0.00 0.00 4.94
3270 3593 0.036388 ACTCCAATGTAGCACCGTGG 60.036 55.000 0.00 0.00 0.00 4.94
3271 3594 0.036388 CTCCAATGTAGCACCGTGGT 60.036 55.000 8.53 8.53 0.00 4.16
3272 3595 0.036765 TCCAATGTAGCACCGTGGTC 60.037 55.000 6.48 0.22 0.00 4.02
3273 3596 1.358725 CCAATGTAGCACCGTGGTCG 61.359 60.000 6.48 0.00 0.00 4.79
3274 3597 0.389296 CAATGTAGCACCGTGGTCGA 60.389 55.000 6.48 0.00 39.71 4.20
3275 3598 0.389426 AATGTAGCACCGTGGTCGAC 60.389 55.000 7.13 7.13 39.71 4.20
3276 3599 2.126189 GTAGCACCGTGGTCGACC 60.126 66.667 28.17 28.17 39.71 4.79
3277 3600 2.598099 TAGCACCGTGGTCGACCA 60.598 61.111 33.23 33.23 45.30 4.02
3294 3617 2.048444 CCATGGTGGTGAAGATGAGG 57.952 55.000 2.57 0.00 31.35 3.86
3295 3618 1.283029 CCATGGTGGTGAAGATGAGGT 59.717 52.381 2.57 0.00 31.35 3.85
3296 3619 2.362736 CATGGTGGTGAAGATGAGGTG 58.637 52.381 0.00 0.00 0.00 4.00
3297 3620 0.692476 TGGTGGTGAAGATGAGGTGG 59.308 55.000 0.00 0.00 0.00 4.61
3298 3621 0.693049 GGTGGTGAAGATGAGGTGGT 59.307 55.000 0.00 0.00 0.00 4.16
3299 3622 1.611673 GGTGGTGAAGATGAGGTGGTG 60.612 57.143 0.00 0.00 0.00 4.17
3300 3623 1.072331 GTGGTGAAGATGAGGTGGTGT 59.928 52.381 0.00 0.00 0.00 4.16
3301 3624 1.774254 TGGTGAAGATGAGGTGGTGTT 59.226 47.619 0.00 0.00 0.00 3.32
3302 3625 2.224523 TGGTGAAGATGAGGTGGTGTTC 60.225 50.000 0.00 0.00 0.00 3.18
3303 3626 2.039084 GGTGAAGATGAGGTGGTGTTCT 59.961 50.000 0.00 0.00 0.00 3.01
3304 3627 3.070018 GTGAAGATGAGGTGGTGTTCTG 58.930 50.000 0.00 0.00 0.00 3.02
3305 3628 2.079925 GAAGATGAGGTGGTGTTCTGC 58.920 52.381 0.00 0.00 0.00 4.26
3306 3629 0.326264 AGATGAGGTGGTGTTCTGCC 59.674 55.000 0.00 0.00 0.00 4.85
3307 3630 0.036732 GATGAGGTGGTGTTCTGCCA 59.963 55.000 0.00 0.00 0.00 4.92
3308 3631 0.700564 ATGAGGTGGTGTTCTGCCAT 59.299 50.000 0.00 0.00 38.40 4.40
3309 3632 1.357137 TGAGGTGGTGTTCTGCCATA 58.643 50.000 0.00 0.00 38.40 2.74
3310 3633 1.003118 TGAGGTGGTGTTCTGCCATAC 59.997 52.381 0.00 0.00 38.40 2.39
3311 3634 1.003118 GAGGTGGTGTTCTGCCATACA 59.997 52.381 0.00 0.00 38.40 2.29
3325 3648 5.791336 TGCCATACAGACTATAGTGGAAG 57.209 43.478 10.90 0.00 0.00 3.46
3326 3649 4.039245 TGCCATACAGACTATAGTGGAAGC 59.961 45.833 10.90 4.70 0.00 3.86
3327 3650 4.561734 GCCATACAGACTATAGTGGAAGCC 60.562 50.000 10.90 0.00 0.00 4.35
3328 3651 4.321304 CCATACAGACTATAGTGGAAGCCG 60.321 50.000 10.90 0.00 0.00 5.52
3329 3652 3.014304 ACAGACTATAGTGGAAGCCGA 57.986 47.619 10.90 0.00 0.00 5.54
3330 3653 2.688958 ACAGACTATAGTGGAAGCCGAC 59.311 50.000 10.90 0.00 0.00 4.79
3331 3654 1.948145 AGACTATAGTGGAAGCCGACG 59.052 52.381 10.90 0.00 0.00 5.12
3332 3655 1.001597 GACTATAGTGGAAGCCGACGG 60.002 57.143 10.90 10.29 0.00 4.79
3333 3656 0.314302 CTATAGTGGAAGCCGACGGG 59.686 60.000 17.22 0.00 0.00 5.28
3352 3675 0.944311 GTGGTCGTCGAACATGTGCT 60.944 55.000 17.34 0.00 29.64 4.40
3353 3676 0.943835 TGGTCGTCGAACATGTGCTG 60.944 55.000 9.38 0.00 0.00 4.41
3359 3682 1.008875 TCGAACATGTGCTGAGACGC 61.009 55.000 0.00 0.00 0.00 5.19
3365 3688 1.820010 ATGTGCTGAGACGCTCCACA 61.820 55.000 15.43 15.43 37.19 4.17
3366 3689 1.300931 GTGCTGAGACGCTCCACAA 60.301 57.895 4.73 0.00 0.00 3.33
3367 3690 1.300931 TGCTGAGACGCTCCACAAC 60.301 57.895 4.73 0.00 0.00 3.32
3368 3691 2.375766 GCTGAGACGCTCCACAACG 61.376 63.158 4.73 0.00 0.00 4.10
3369 3692 1.285950 CTGAGACGCTCCACAACGA 59.714 57.895 0.00 0.00 0.00 3.85
3370 3693 0.730834 CTGAGACGCTCCACAACGAG 60.731 60.000 0.00 0.00 0.00 4.18
3377 3700 1.581954 CTCCACAACGAGCTCGAGT 59.418 57.895 40.58 31.92 43.02 4.18
3399 3722 3.947910 TTGAAACGTACACCTAGAGGG 57.052 47.619 0.00 0.00 40.27 4.30
3442 3765 7.547227 AGCACAATTTTAGTTCTTCACAAGTT 58.453 30.769 0.00 0.00 0.00 2.66
3454 3777 7.226720 AGTTCTTCACAAGTTATGTAACAGTGG 59.773 37.037 19.23 10.59 41.46 4.00
3457 3780 3.071479 ACAAGTTATGTAACAGTGGCGG 58.929 45.455 5.77 0.00 41.63 6.13
3475 3798 2.558313 GTGCCTTGTTGCGCTCTC 59.442 61.111 9.73 0.00 38.69 3.20
3483 3806 3.515630 CTTGTTGCGCTCTCTTCTCATA 58.484 45.455 9.73 0.00 0.00 2.15
3496 3819 7.447238 GCTCTCTTCTCATACTACAAGTAGGAT 59.553 40.741 11.57 5.71 40.21 3.24
3500 3823 9.352191 TCTTCTCATACTACAAGTAGGATTACC 57.648 37.037 11.57 0.00 40.21 2.85
3512 3835 4.906060 AGTAGGATTACCATAGTTCACCCC 59.094 45.833 0.00 0.00 38.94 4.95
3514 3837 2.701951 GGATTACCATAGTTCACCCCGA 59.298 50.000 0.00 0.00 35.97 5.14
3515 3838 3.135167 GGATTACCATAGTTCACCCCGAA 59.865 47.826 0.00 0.00 35.97 4.30
3530 3853 3.388350 ACCCCGAAAGTCCTATTCTGATC 59.612 47.826 0.00 0.00 0.00 2.92
3536 3859 3.885976 AGTCCTATTCTGATCCCGAGA 57.114 47.619 0.00 0.00 0.00 4.04
3537 3860 3.492337 AGTCCTATTCTGATCCCGAGAC 58.508 50.000 0.00 0.00 0.00 3.36
3543 3866 4.510167 ATTCTGATCCCGAGACCAAATT 57.490 40.909 0.00 0.00 0.00 1.82
3544 3867 3.543680 TCTGATCCCGAGACCAAATTC 57.456 47.619 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.296471 GGATACGGAGGTCACTATGTGG 59.704 54.545 0.00 0.00 33.87 4.17
18 19 2.028631 GCCCCACGCTACGGATAC 59.971 66.667 0.00 0.00 0.00 2.24
19 20 2.442458 TGCCCCACGCTACGGATA 60.442 61.111 0.00 0.00 38.78 2.59
20 21 3.849951 CTGCCCCACGCTACGGAT 61.850 66.667 0.00 0.00 38.78 4.18
58 59 3.558411 GATCGCTGGCTGTCGTGC 61.558 66.667 7.72 0.00 0.00 5.34
59 60 3.250323 CGATCGCTGGCTGTCGTG 61.250 66.667 0.26 0.00 0.00 4.35
60 61 2.989881 TTCGATCGCTGGCTGTCGT 61.990 57.895 11.09 0.00 35.71 4.34
61 62 2.202610 TTCGATCGCTGGCTGTCG 60.203 61.111 11.09 9.14 35.55 4.35
62 63 2.167861 GGTTCGATCGCTGGCTGTC 61.168 63.158 11.09 0.00 0.00 3.51
63 64 2.125512 GGTTCGATCGCTGGCTGT 60.126 61.111 11.09 0.00 0.00 4.40
64 65 2.125552 TGGTTCGATCGCTGGCTG 60.126 61.111 11.09 0.00 0.00 4.85
65 66 1.888436 TTCTGGTTCGATCGCTGGCT 61.888 55.000 11.09 0.00 0.00 4.75
66 67 1.424493 CTTCTGGTTCGATCGCTGGC 61.424 60.000 11.09 0.00 0.00 4.85
67 68 0.807667 CCTTCTGGTTCGATCGCTGG 60.808 60.000 11.09 0.00 0.00 4.85
68 69 0.173481 TCCTTCTGGTTCGATCGCTG 59.827 55.000 11.09 0.90 34.23 5.18
69 70 0.173708 GTCCTTCTGGTTCGATCGCT 59.826 55.000 11.09 0.00 34.23 4.93
70 71 1.140407 CGTCCTTCTGGTTCGATCGC 61.140 60.000 11.09 0.00 35.33 4.58
71 72 0.170561 ACGTCCTTCTGGTTCGATCG 59.829 55.000 9.36 9.36 36.39 3.69
72 73 1.469423 GGACGTCCTTCTGGTTCGATC 60.469 57.143 27.64 0.00 36.39 3.69
73 74 0.531200 GGACGTCCTTCTGGTTCGAT 59.469 55.000 27.64 0.00 36.39 3.59
74 75 1.859427 CGGACGTCCTTCTGGTTCGA 61.859 60.000 30.92 0.00 36.39 3.71
75 76 1.443872 CGGACGTCCTTCTGGTTCG 60.444 63.158 30.92 11.54 37.59 3.95
76 77 0.388263 GACGGACGTCCTTCTGGTTC 60.388 60.000 30.92 12.14 39.08 3.62
77 78 1.664306 GACGGACGTCCTTCTGGTT 59.336 57.895 30.92 7.25 39.08 3.67
78 79 2.623915 CGACGGACGTCCTTCTGGT 61.624 63.158 31.24 22.21 41.76 4.00
79 80 2.178521 CGACGGACGTCCTTCTGG 59.821 66.667 31.24 19.41 41.76 3.86
107 108 2.520020 TCTGACGACGGTGGTGGT 60.520 61.111 0.00 0.00 37.85 4.16
108 109 2.049433 GTCTGACGACGGTGGTGG 60.049 66.667 0.00 0.00 0.00 4.61
109 110 2.049433 GGTCTGACGACGGTGGTG 60.049 66.667 0.00 0.00 41.16 4.17
110 111 3.667282 CGGTCTGACGACGGTGGT 61.667 66.667 0.00 0.00 41.16 4.16
115 116 3.713615 CTACCGCGGTCTGACGACG 62.714 68.421 38.01 10.03 41.16 5.12
116 117 2.099831 CTACCGCGGTCTGACGAC 59.900 66.667 38.01 0.00 39.49 4.34
117 118 2.046988 TCTACCGCGGTCTGACGA 60.047 61.111 38.01 20.65 35.47 4.20
118 119 2.403987 CTCTACCGCGGTCTGACG 59.596 66.667 38.01 21.18 0.00 4.35
119 120 2.102553 GCTCTACCGCGGTCTGAC 59.897 66.667 38.01 19.71 0.00 3.51
127 128 2.925162 AAATGCTCCCGCTCTACCGC 62.925 60.000 0.00 0.00 36.97 5.68
128 129 0.462047 AAAATGCTCCCGCTCTACCG 60.462 55.000 0.00 0.00 36.97 4.02
129 130 1.017387 CAAAATGCTCCCGCTCTACC 58.983 55.000 0.00 0.00 36.97 3.18
130 131 1.017387 CCAAAATGCTCCCGCTCTAC 58.983 55.000 0.00 0.00 36.97 2.59
131 132 0.908910 TCCAAAATGCTCCCGCTCTA 59.091 50.000 0.00 0.00 36.97 2.43
132 133 0.678048 GTCCAAAATGCTCCCGCTCT 60.678 55.000 0.00 0.00 36.97 4.09
133 134 0.960364 TGTCCAAAATGCTCCCGCTC 60.960 55.000 0.00 0.00 36.97 5.03
134 135 0.962356 CTGTCCAAAATGCTCCCGCT 60.962 55.000 0.00 0.00 36.97 5.52
135 136 1.508088 CTGTCCAAAATGCTCCCGC 59.492 57.895 0.00 0.00 0.00 6.13
136 137 1.508088 GCTGTCCAAAATGCTCCCG 59.492 57.895 0.00 0.00 0.00 5.14
137 138 0.960364 TCGCTGTCCAAAATGCTCCC 60.960 55.000 0.00 0.00 0.00 4.30
138 139 0.169009 GTCGCTGTCCAAAATGCTCC 59.831 55.000 0.00 0.00 0.00 4.70
139 140 1.160137 AGTCGCTGTCCAAAATGCTC 58.840 50.000 0.00 0.00 0.00 4.26
140 141 1.267806 CAAGTCGCTGTCCAAAATGCT 59.732 47.619 0.00 0.00 0.00 3.79
141 142 1.689959 CAAGTCGCTGTCCAAAATGC 58.310 50.000 0.00 0.00 0.00 3.56
142 143 1.666888 GGCAAGTCGCTGTCCAAAATG 60.667 52.381 0.00 0.00 41.91 2.32
143 144 0.598065 GGCAAGTCGCTGTCCAAAAT 59.402 50.000 0.00 0.00 41.91 1.82
144 145 1.781025 CGGCAAGTCGCTGTCCAAAA 61.781 55.000 0.00 0.00 42.55 2.44
145 146 2.250939 CGGCAAGTCGCTGTCCAAA 61.251 57.895 0.00 0.00 42.55 3.28
146 147 2.664851 CGGCAAGTCGCTGTCCAA 60.665 61.111 0.00 0.00 42.55 3.53
166 167 3.006728 TACCTGTTGGCCCGGGAG 61.007 66.667 29.31 12.62 36.63 4.30
167 168 3.006728 CTACCTGTTGGCCCGGGA 61.007 66.667 29.31 0.00 36.63 5.14
168 169 4.796495 GCTACCTGTTGGCCCGGG 62.796 72.222 19.09 19.09 36.63 5.73
169 170 4.796495 GGCTACCTGTTGGCCCGG 62.796 72.222 0.00 0.00 39.96 5.73
172 173 4.029809 ACGGGCTACCTGTTGGCC 62.030 66.667 13.02 13.02 40.77 5.36
173 174 2.746277 CACGGGCTACCTGTTGGC 60.746 66.667 0.00 0.00 40.77 4.52
174 175 2.046314 CCACGGGCTACCTGTTGG 60.046 66.667 0.00 0.00 40.77 3.77
175 176 2.746277 GCCACGGGCTACCTGTTG 60.746 66.667 7.58 0.00 46.69 3.33
188 189 4.154347 CTCCCTGCTCTCCGCCAC 62.154 72.222 0.00 0.00 38.05 5.01
191 192 4.828925 GTGCTCCCTGCTCTCCGC 62.829 72.222 0.00 0.00 43.37 5.54
192 193 4.154347 GGTGCTCCCTGCTCTCCG 62.154 72.222 0.00 0.00 43.37 4.63
217 218 3.976701 GATGTGGGTGTGGGCGGAG 62.977 68.421 0.00 0.00 0.00 4.63
218 219 4.028490 GATGTGGGTGTGGGCGGA 62.028 66.667 0.00 0.00 0.00 5.54
223 224 4.343323 TGGGCGATGTGGGTGTGG 62.343 66.667 0.00 0.00 0.00 4.17
224 225 3.055719 GTGGGCGATGTGGGTGTG 61.056 66.667 0.00 0.00 0.00 3.82
225 226 4.344865 GGTGGGCGATGTGGGTGT 62.345 66.667 0.00 0.00 0.00 4.16
251 252 3.785859 TCTCCATGCGGCTCCCAC 61.786 66.667 0.00 0.00 0.00 4.61
252 253 3.785859 GTCTCCATGCGGCTCCCA 61.786 66.667 0.00 0.00 0.00 4.37
253 254 3.746949 CTGTCTCCATGCGGCTCCC 62.747 68.421 0.00 0.00 0.00 4.30
254 255 2.202987 CTGTCTCCATGCGGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
255 256 1.812922 CACTGTCTCCATGCGGCTC 60.813 63.158 0.00 0.00 0.00 4.70
256 257 2.267006 CACTGTCTCCATGCGGCT 59.733 61.111 0.00 0.00 0.00 5.52
257 258 3.503363 GCACTGTCTCCATGCGGC 61.503 66.667 0.00 0.00 0.00 6.53
258 259 2.046988 TGCACTGTCTCCATGCGG 60.047 61.111 0.00 0.00 42.44 5.69
259 260 2.747822 GCTGCACTGTCTCCATGCG 61.748 63.158 0.00 0.00 42.44 4.73
260 261 1.030488 ATGCTGCACTGTCTCCATGC 61.030 55.000 3.57 0.00 39.88 4.06
261 262 1.015109 GATGCTGCACTGTCTCCATG 58.985 55.000 3.57 0.00 0.00 3.66
262 263 0.910338 AGATGCTGCACTGTCTCCAT 59.090 50.000 3.57 0.00 0.00 3.41
263 264 0.689055 AAGATGCTGCACTGTCTCCA 59.311 50.000 3.57 0.00 0.00 3.86
264 265 1.085091 CAAGATGCTGCACTGTCTCC 58.915 55.000 3.57 0.00 0.00 3.71
265 266 2.090400 TCAAGATGCTGCACTGTCTC 57.910 50.000 3.57 0.00 0.00 3.36
266 267 2.027469 TGATCAAGATGCTGCACTGTCT 60.027 45.455 3.57 0.60 0.00 3.41
267 268 2.353323 TGATCAAGATGCTGCACTGTC 58.647 47.619 3.57 0.00 0.00 3.51
268 269 2.484742 TGATCAAGATGCTGCACTGT 57.515 45.000 3.57 0.00 0.00 3.55
269 270 3.007635 TCTTGATCAAGATGCTGCACTG 58.992 45.455 30.05 5.43 42.06 3.66
270 271 3.345508 TCTTGATCAAGATGCTGCACT 57.654 42.857 30.05 1.31 42.06 4.40
271 272 4.017380 CTTCTTGATCAAGATGCTGCAC 57.983 45.455 33.02 0.00 45.78 4.57
277 278 3.264947 TCGGTGCTTCTTGATCAAGATG 58.735 45.455 33.02 32.54 45.78 2.90
278 279 3.616956 TCGGTGCTTCTTGATCAAGAT 57.383 42.857 33.02 0.00 45.78 2.40
279 280 3.616956 ATCGGTGCTTCTTGATCAAGA 57.383 42.857 30.05 30.05 44.94 3.02
280 281 4.691860 AAATCGGTGCTTCTTGATCAAG 57.308 40.909 26.56 26.56 39.71 3.02
281 282 4.797471 CAAAATCGGTGCTTCTTGATCAA 58.203 39.130 8.12 8.12 0.00 2.57
282 283 3.366273 GCAAAATCGGTGCTTCTTGATCA 60.366 43.478 0.00 0.00 39.00 2.92
283 284 3.174375 GCAAAATCGGTGCTTCTTGATC 58.826 45.455 0.00 0.00 39.00 2.92
284 285 2.414559 CGCAAAATCGGTGCTTCTTGAT 60.415 45.455 0.00 0.00 39.95 2.57
285 286 1.069296 CGCAAAATCGGTGCTTCTTGA 60.069 47.619 0.00 0.00 39.95 3.02
286 287 1.330306 CGCAAAATCGGTGCTTCTTG 58.670 50.000 0.00 0.00 39.95 3.02
287 288 0.951558 ACGCAAAATCGGTGCTTCTT 59.048 45.000 0.00 0.00 39.95 2.52
288 289 0.517316 GACGCAAAATCGGTGCTTCT 59.483 50.000 0.00 0.00 39.95 2.85
289 290 0.789383 CGACGCAAAATCGGTGCTTC 60.789 55.000 0.00 0.00 39.95 3.86
290 291 1.206578 CGACGCAAAATCGGTGCTT 59.793 52.632 0.00 0.00 39.95 3.91
291 292 2.860293 CGACGCAAAATCGGTGCT 59.140 55.556 0.00 0.00 39.95 4.40
292 293 2.869702 GCGACGCAAAATCGGTGC 60.870 61.111 16.42 0.00 39.99 5.01
293 294 2.570581 CGCGACGCAAAATCGGTG 60.571 61.111 21.35 0.00 39.99 4.94
294 295 2.726691 CTCGCGACGCAAAATCGGT 61.727 57.895 21.35 0.00 39.99 4.69
295 296 2.020016 CTCGCGACGCAAAATCGG 59.980 61.111 21.35 1.10 39.99 4.18
296 297 2.020016 CCTCGCGACGCAAAATCG 59.980 61.111 21.35 1.90 42.55 3.34
297 298 1.058903 GACCTCGCGACGCAAAATC 59.941 57.895 21.35 7.97 0.00 2.17
298 299 2.388232 GGACCTCGCGACGCAAAAT 61.388 57.895 21.35 1.60 0.00 1.82
299 300 3.039588 GGACCTCGCGACGCAAAA 61.040 61.111 21.35 3.43 0.00 2.44
309 310 4.308458 TTGGTGTGCGGGACCTCG 62.308 66.667 0.00 0.00 34.26 4.63
310 311 2.358737 CTTGGTGTGCGGGACCTC 60.359 66.667 0.00 0.00 34.26 3.85
311 312 3.953775 CCTTGGTGTGCGGGACCT 61.954 66.667 0.00 0.00 34.26 3.85
329 330 2.941583 AACCAAGGAGGAGGGGGC 60.942 66.667 0.00 0.00 41.22 5.80
330 331 1.229984 AGAACCAAGGAGGAGGGGG 60.230 63.158 0.00 0.00 41.22 5.40
331 332 1.994463 CAGAACCAAGGAGGAGGGG 59.006 63.158 0.00 0.00 41.22 4.79
332 333 1.301293 GCAGAACCAAGGAGGAGGG 59.699 63.158 0.00 0.00 41.22 4.30
333 334 0.035630 CTGCAGAACCAAGGAGGAGG 60.036 60.000 8.42 0.00 41.22 4.30
334 335 0.979665 TCTGCAGAACCAAGGAGGAG 59.020 55.000 15.67 0.00 41.22 3.69
335 336 0.687354 GTCTGCAGAACCAAGGAGGA 59.313 55.000 20.19 0.00 41.22 3.71
336 337 0.322008 GGTCTGCAGAACCAAGGAGG 60.322 60.000 21.71 0.00 45.67 4.30
337 338 3.239861 GGTCTGCAGAACCAAGGAG 57.760 57.895 21.71 0.00 0.00 3.69
344 345 2.435059 GGAGCGGGTCTGCAGAAC 60.435 66.667 24.10 24.10 37.31 3.01
345 346 3.706373 GGGAGCGGGTCTGCAGAA 61.706 66.667 20.19 0.00 37.31 3.02
347 348 4.463879 CTGGGAGCGGGTCTGCAG 62.464 72.222 7.63 7.63 37.31 4.41
389 390 0.878523 TATAATGCTGCCGACCGTGC 60.879 55.000 0.00 0.00 0.00 5.34
390 391 1.139989 CTATAATGCTGCCGACCGTG 58.860 55.000 0.00 0.00 0.00 4.94
391 392 1.000163 CTCTATAATGCTGCCGACCGT 60.000 52.381 0.00 0.00 0.00 4.83
392 393 1.670087 CCTCTATAATGCTGCCGACCG 60.670 57.143 0.00 0.00 0.00 4.79
393 394 1.618837 TCCTCTATAATGCTGCCGACC 59.381 52.381 0.00 0.00 0.00 4.79
394 395 3.321497 CTTCCTCTATAATGCTGCCGAC 58.679 50.000 0.00 0.00 0.00 4.79
395 396 2.300152 CCTTCCTCTATAATGCTGCCGA 59.700 50.000 0.00 0.00 0.00 5.54
396 397 2.693069 CCTTCCTCTATAATGCTGCCG 58.307 52.381 0.00 0.00 0.00 5.69
397 398 2.431454 GCCTTCCTCTATAATGCTGCC 58.569 52.381 0.00 0.00 0.00 4.85
398 399 2.072298 CGCCTTCCTCTATAATGCTGC 58.928 52.381 0.00 0.00 0.00 5.25
399 400 2.072298 GCGCCTTCCTCTATAATGCTG 58.928 52.381 0.00 0.00 0.00 4.41
400 401 1.337260 CGCGCCTTCCTCTATAATGCT 60.337 52.381 0.00 0.00 0.00 3.79
401 402 1.071605 CGCGCCTTCCTCTATAATGC 58.928 55.000 0.00 0.00 0.00 3.56
402 403 1.714794 CCGCGCCTTCCTCTATAATG 58.285 55.000 0.00 0.00 0.00 1.90
403 404 0.037232 GCCGCGCCTTCCTCTATAAT 60.037 55.000 0.00 0.00 0.00 1.28
404 405 1.366366 GCCGCGCCTTCCTCTATAA 59.634 57.895 0.00 0.00 0.00 0.98
405 406 2.916052 CGCCGCGCCTTCCTCTATA 61.916 63.158 0.00 0.00 0.00 1.31
406 407 4.286320 CGCCGCGCCTTCCTCTAT 62.286 66.667 0.00 0.00 0.00 1.98
420 421 3.553095 AAGTTGGACTCCCTGCGCC 62.553 63.158 4.18 0.00 0.00 6.53
421 422 1.172812 AAAAGTTGGACTCCCTGCGC 61.173 55.000 0.00 0.00 0.00 6.09
422 423 1.001378 CAAAAAGTTGGACTCCCTGCG 60.001 52.381 0.00 0.00 0.00 5.18
423 424 2.294512 CTCAAAAAGTTGGACTCCCTGC 59.705 50.000 0.00 0.00 35.29 4.85
424 425 2.294512 GCTCAAAAAGTTGGACTCCCTG 59.705 50.000 0.00 0.00 35.29 4.45
425 426 2.091885 TGCTCAAAAAGTTGGACTCCCT 60.092 45.455 0.00 0.00 35.29 4.20
426 427 2.034685 GTGCTCAAAAAGTTGGACTCCC 59.965 50.000 0.00 0.00 35.29 4.30
427 428 2.034685 GGTGCTCAAAAAGTTGGACTCC 59.965 50.000 0.00 0.00 35.29 3.85
428 429 2.287009 CGGTGCTCAAAAAGTTGGACTC 60.287 50.000 0.00 0.00 35.29 3.36
429 430 1.676006 CGGTGCTCAAAAAGTTGGACT 59.324 47.619 0.00 0.00 35.29 3.85
430 431 1.864029 GCGGTGCTCAAAAAGTTGGAC 60.864 52.381 0.00 0.00 35.29 4.02
431 432 0.383949 GCGGTGCTCAAAAAGTTGGA 59.616 50.000 0.00 0.00 35.29 3.53
432 433 0.597377 GGCGGTGCTCAAAAAGTTGG 60.597 55.000 0.00 0.00 35.29 3.77
433 434 0.102120 TGGCGGTGCTCAAAAAGTTG 59.898 50.000 0.00 0.00 35.95 3.16
434 435 0.385390 CTGGCGGTGCTCAAAAAGTT 59.615 50.000 0.00 0.00 0.00 2.66
435 436 2.032981 CTGGCGGTGCTCAAAAAGT 58.967 52.632 0.00 0.00 0.00 2.66
436 437 1.372128 GCTGGCGGTGCTCAAAAAG 60.372 57.895 0.00 0.00 0.00 2.27
437 438 2.727544 GCTGGCGGTGCTCAAAAA 59.272 55.556 0.00 0.00 0.00 1.94
438 439 3.659092 CGCTGGCGGTGCTCAAAA 61.659 61.111 7.12 0.00 35.56 2.44
450 451 4.559063 CCATGCTCCTCCCGCTGG 62.559 72.222 0.00 0.00 0.00 4.85
451 452 3.746949 GACCATGCTCCTCCCGCTG 62.747 68.421 0.00 0.00 0.00 5.18
452 453 3.474570 GACCATGCTCCTCCCGCT 61.475 66.667 0.00 0.00 0.00 5.52
453 454 4.899239 CGACCATGCTCCTCCCGC 62.899 72.222 0.00 0.00 0.00 6.13
454 455 2.032860 ATTCGACCATGCTCCTCCCG 62.033 60.000 0.00 0.00 0.00 5.14
455 456 0.250081 GATTCGACCATGCTCCTCCC 60.250 60.000 0.00 0.00 0.00 4.30
456 457 0.465705 TGATTCGACCATGCTCCTCC 59.534 55.000 0.00 0.00 0.00 4.30
457 458 1.410517 TCTGATTCGACCATGCTCCTC 59.589 52.381 0.00 0.00 0.00 3.71
458 459 1.489481 TCTGATTCGACCATGCTCCT 58.511 50.000 0.00 0.00 0.00 3.69
459 460 2.540265 ATCTGATTCGACCATGCTCC 57.460 50.000 0.00 0.00 0.00 4.70
460 461 3.873361 TCAAATCTGATTCGACCATGCTC 59.127 43.478 2.92 0.00 0.00 4.26
461 462 3.877559 TCAAATCTGATTCGACCATGCT 58.122 40.909 2.92 0.00 0.00 3.79
462 463 4.274214 TGATCAAATCTGATTCGACCATGC 59.726 41.667 2.92 0.00 42.60 4.06
463 464 5.996669 TGATCAAATCTGATTCGACCATG 57.003 39.130 2.92 0.00 42.60 3.66
464 465 7.423199 CAAATGATCAAATCTGATTCGACCAT 58.577 34.615 0.00 0.00 42.60 3.55
465 466 6.678655 GCAAATGATCAAATCTGATTCGACCA 60.679 38.462 0.00 0.00 42.60 4.02
466 467 5.684626 GCAAATGATCAAATCTGATTCGACC 59.315 40.000 0.00 0.00 42.60 4.79
467 468 5.684626 GGCAAATGATCAAATCTGATTCGAC 59.315 40.000 0.00 0.00 42.60 4.20
468 469 5.591472 AGGCAAATGATCAAATCTGATTCGA 59.409 36.000 0.00 0.00 42.60 3.71
469 470 5.828747 AGGCAAATGATCAAATCTGATTCG 58.171 37.500 0.00 0.00 42.60 3.34
470 471 5.913514 CGAGGCAAATGATCAAATCTGATTC 59.086 40.000 0.00 0.00 42.60 2.52
471 472 5.359009 ACGAGGCAAATGATCAAATCTGATT 59.641 36.000 0.00 0.00 42.60 2.57
472 473 4.885907 ACGAGGCAAATGATCAAATCTGAT 59.114 37.500 0.00 0.00 45.34 2.90
473 474 4.264253 ACGAGGCAAATGATCAAATCTGA 58.736 39.130 0.00 0.00 35.56 3.27
474 475 4.627611 ACGAGGCAAATGATCAAATCTG 57.372 40.909 0.00 0.00 0.00 2.90
481 482 5.095490 CCAAGTAAAACGAGGCAAATGATC 58.905 41.667 0.00 0.00 0.00 2.92
515 516 4.263911 GCATTGAGATAAAGCAGCGAAAAC 59.736 41.667 0.00 0.00 0.00 2.43
557 558 4.827284 ACCATTCTCGTGAAAATTTGGACT 59.173 37.500 19.27 1.38 34.15 3.85
559 560 4.022416 CCACCATTCTCGTGAAAATTTGGA 60.022 41.667 19.27 0.00 34.15 3.53
561 562 5.119931 TCCACCATTCTCGTGAAAATTTG 57.880 39.130 3.74 0.00 35.63 2.32
565 566 7.827236 ACTAATAATCCACCATTCTCGTGAAAA 59.173 33.333 3.74 0.00 35.63 2.29
566 567 7.279981 CACTAATAATCCACCATTCTCGTGAAA 59.720 37.037 3.74 0.00 35.63 2.69
569 570 6.280643 TCACTAATAATCCACCATTCTCGTG 58.719 40.000 0.00 0.00 0.00 4.35
575 576 9.927081 AGAAAATCTCACTAATAATCCACCATT 57.073 29.630 0.00 0.00 0.00 3.16
577 578 8.772250 AGAGAAAATCTCACTAATAATCCACCA 58.228 33.333 9.82 0.00 45.73 4.17
597 598 7.617329 TCATCTCTTCAGATACCTTCAGAGAAA 59.383 37.037 1.03 0.00 37.25 2.52
600 601 6.772233 TCTCATCTCTTCAGATACCTTCAGAG 59.228 42.308 0.00 0.00 37.25 3.35
602 603 6.957920 TCTCATCTCTTCAGATACCTTCAG 57.042 41.667 0.00 0.00 37.25 3.02
609 610 9.534565 CCGTTTTATTTCTCATCTCTTCAGATA 57.465 33.333 0.00 0.00 37.25 1.98
610 611 8.043710 ACCGTTTTATTTCTCATCTCTTCAGAT 58.956 33.333 0.00 0.00 40.32 2.90
611 612 7.331934 CACCGTTTTATTTCTCATCTCTTCAGA 59.668 37.037 0.00 0.00 0.00 3.27
612 613 7.459486 CACCGTTTTATTTCTCATCTCTTCAG 58.541 38.462 0.00 0.00 0.00 3.02
613 614 6.128282 GCACCGTTTTATTTCTCATCTCTTCA 60.128 38.462 0.00 0.00 0.00 3.02
614 615 6.128282 TGCACCGTTTTATTTCTCATCTCTTC 60.128 38.462 0.00 0.00 0.00 2.87
615 616 5.705441 TGCACCGTTTTATTTCTCATCTCTT 59.295 36.000 0.00 0.00 0.00 2.85
616 617 5.245531 TGCACCGTTTTATTTCTCATCTCT 58.754 37.500 0.00 0.00 0.00 3.10
617 618 5.545658 TGCACCGTTTTATTTCTCATCTC 57.454 39.130 0.00 0.00 0.00 2.75
636 637 3.087781 TGGGACGATTTGATCATTTGCA 58.912 40.909 0.00 0.00 0.00 4.08
637 638 3.438360 GTGGGACGATTTGATCATTTGC 58.562 45.455 0.00 0.00 0.00 3.68
655 656 1.203928 GATGCTCTGACGATTCGTGG 58.796 55.000 17.75 9.23 41.37 4.94
656 657 0.842613 CGATGCTCTGACGATTCGTG 59.157 55.000 17.75 3.14 41.37 4.35
666 667 1.326852 GCTGAACATGTCGATGCTCTG 59.673 52.381 0.00 0.00 32.14 3.35
667 668 1.206610 AGCTGAACATGTCGATGCTCT 59.793 47.619 0.00 0.00 32.14 4.09
673 674 2.030274 TCTTTCGAGCTGAACATGTCGA 60.030 45.455 0.00 0.00 39.57 4.20
683 684 5.339990 TGTTTTCCTTTTTCTTTCGAGCTG 58.660 37.500 0.00 0.00 0.00 4.24
722 771 3.876300 GCACTAGGCACGTGAAGG 58.124 61.111 22.23 8.17 43.97 3.46
781 848 3.385433 TCTGGTTCAGACGGACTGTAAAA 59.615 43.478 7.32 0.00 45.86 1.52
798 878 1.070289 GTTTCCCGAACTGAGTCTGGT 59.930 52.381 1.82 0.00 35.31 4.00
858 941 5.342433 TGCACATTATCACAAGCTTATTGC 58.658 37.500 0.00 0.00 43.29 3.56
859 942 6.639686 GGATGCACATTATCACAAGCTTATTG 59.360 38.462 0.00 0.00 0.00 1.90
860 943 6.548622 AGGATGCACATTATCACAAGCTTATT 59.451 34.615 0.00 0.00 0.00 1.40
861 944 6.066690 AGGATGCACATTATCACAAGCTTAT 58.933 36.000 0.00 0.00 0.00 1.73
862 945 5.439721 AGGATGCACATTATCACAAGCTTA 58.560 37.500 0.00 0.00 0.00 3.09
863 946 4.275810 AGGATGCACATTATCACAAGCTT 58.724 39.130 0.00 0.00 0.00 3.74
864 947 3.881688 GAGGATGCACATTATCACAAGCT 59.118 43.478 0.00 0.00 0.00 3.74
917 1036 0.905337 AAGGGAAGGGAGTGAGGACG 60.905 60.000 0.00 0.00 0.00 4.79
979 1103 1.328279 CCACTTCTTGGGGAAACACC 58.672 55.000 0.00 0.00 43.63 4.16
1110 1245 1.066858 TCGCCGATCTCTTCTTGCTTT 60.067 47.619 0.00 0.00 0.00 3.51
1130 1265 2.737180 CTCCGGCCGCATGATACT 59.263 61.111 22.85 0.00 0.00 2.12
1132 1267 2.523168 TCCTCCGGCCGCATGATA 60.523 61.111 22.85 0.00 0.00 2.15
1142 1277 3.203412 CGTCGTCTCCTCCTCCGG 61.203 72.222 0.00 0.00 0.00 5.14
1297 1433 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1298 1434 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1301 1437 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1302 1438 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1304 1440 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
1305 1441 5.960811 AGAAAGAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
1739 1875 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1740 1876 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1741 1877 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1742 1878 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1743 1879 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1744 1880 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1745 1881 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1746 1882 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1747 1883 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
1748 1884 2.225491 AGAAACACACACACACACACAC 59.775 45.455 0.00 0.00 0.00 3.82
1749 1885 2.499197 AGAAACACACACACACACACA 58.501 42.857 0.00 0.00 0.00 3.72
1750 1886 3.233578 CAAGAAACACACACACACACAC 58.766 45.455 0.00 0.00 0.00 3.82
1751 1887 2.351253 GCAAGAAACACACACACACACA 60.351 45.455 0.00 0.00 0.00 3.72
1752 1888 2.250188 GCAAGAAACACACACACACAC 58.750 47.619 0.00 0.00 0.00 3.82
1753 1889 1.882623 TGCAAGAAACACACACACACA 59.117 42.857 0.00 0.00 0.00 3.72
1754 1890 2.250188 GTGCAAGAAACACACACACAC 58.750 47.619 0.00 0.00 37.96 3.82
1755 1891 1.882623 TGTGCAAGAAACACACACACA 59.117 42.857 0.00 0.00 42.88 3.72
1756 1892 2.627863 TGTGCAAGAAACACACACAC 57.372 45.000 0.00 0.00 42.88 3.82
1762 1898 0.307760 CCGGAGTGTGCAAGAAACAC 59.692 55.000 0.00 0.00 46.70 3.32
2425 2606 2.125673 CGGTTCGTCCAAGGCGAT 60.126 61.111 6.49 0.00 38.21 4.58
2431 2612 4.324424 GAACGTCGGTTCGTCCAA 57.676 55.556 0.00 0.00 42.78 3.53
2575 2769 3.120792 GCACGAACAGAACTGACAGTAA 58.879 45.455 8.91 0.00 0.00 2.24
2588 2782 1.452110 CATGGATTGGAGCACGAACA 58.548 50.000 0.00 0.00 0.00 3.18
2702 2919 3.357897 GAAGATGCAATTAGCTTCACGC 58.642 45.455 0.00 0.00 46.70 5.34
2761 2984 2.985847 AAGACGGCAAGGCAAGGC 60.986 61.111 0.00 0.00 0.00 4.35
2762 2985 2.629656 CCAAGACGGCAAGGCAAGG 61.630 63.158 0.00 0.00 0.00 3.61
2766 2989 4.043200 GCACCAAGACGGCAAGGC 62.043 66.667 0.00 0.00 39.03 4.35
2767 2990 3.726517 CGCACCAAGACGGCAAGG 61.727 66.667 0.00 0.00 39.03 3.61
2768 2991 2.664851 TCGCACCAAGACGGCAAG 60.665 61.111 0.00 0.00 39.03 4.01
2769 2992 2.449031 ATCTCGCACCAAGACGGCAA 62.449 55.000 0.00 0.00 39.03 4.52
2842 3075 2.183046 GGACTCTCGAGTGGCTGC 59.817 66.667 19.17 0.70 42.66 5.25
2852 3085 1.662438 CGGAGGAGCTGTGGACTCTC 61.662 65.000 0.00 0.00 34.46 3.20
2854 3087 1.939769 GACGGAGGAGCTGTGGACTC 61.940 65.000 0.00 0.00 35.85 3.36
2856 3089 2.574399 GACGGAGGAGCTGTGGAC 59.426 66.667 0.00 0.00 35.85 4.02
2859 3092 4.803426 GGCGACGGAGGAGCTGTG 62.803 72.222 0.00 0.00 35.85 3.66
2885 3118 5.353111 CATCATATCATAGCAGCAGAGGAG 58.647 45.833 0.00 0.00 0.00 3.69
2886 3119 4.382793 GCATCATATCATAGCAGCAGAGGA 60.383 45.833 0.00 0.00 0.00 3.71
2888 3121 4.760878 AGCATCATATCATAGCAGCAGAG 58.239 43.478 0.00 0.00 0.00 3.35
2889 3122 4.820894 AGCATCATATCATAGCAGCAGA 57.179 40.909 0.00 0.00 0.00 4.26
2898 3131 8.925338 TGCTTCTGATAGATAGCATCATATCAT 58.075 33.333 9.84 0.00 35.24 2.45
2899 3132 8.302515 TGCTTCTGATAGATAGCATCATATCA 57.697 34.615 9.84 3.26 35.24 2.15
2900 3133 9.251792 CTTGCTTCTGATAGATAGCATCATATC 57.748 37.037 12.81 0.00 37.80 1.63
2901 3134 7.711772 GCTTGCTTCTGATAGATAGCATCATAT 59.288 37.037 12.81 0.00 37.80 1.78
2955 3191 1.048601 ATCACAAGAGTCCACCACGT 58.951 50.000 0.00 0.00 0.00 4.49
2956 3192 3.190079 CATATCACAAGAGTCCACCACG 58.810 50.000 0.00 0.00 0.00 4.94
2957 3193 2.939103 GCATATCACAAGAGTCCACCAC 59.061 50.000 0.00 0.00 0.00 4.16
2958 3194 2.092968 GGCATATCACAAGAGTCCACCA 60.093 50.000 0.00 0.00 0.00 4.17
2959 3195 2.171448 AGGCATATCACAAGAGTCCACC 59.829 50.000 0.00 0.00 0.00 4.61
2960 3196 3.462021 GAGGCATATCACAAGAGTCCAC 58.538 50.000 0.00 0.00 0.00 4.02
3033 3281 5.697178 TGGCGTACATATAATGCGTAACAAT 59.303 36.000 0.00 0.00 0.00 2.71
3034 3282 5.048507 TGGCGTACATATAATGCGTAACAA 58.951 37.500 0.00 0.00 0.00 2.83
3035 3283 4.618965 TGGCGTACATATAATGCGTAACA 58.381 39.130 0.00 0.00 0.00 2.41
3114 3362 8.436200 CGGTACTCTGAAAATTCTACTTTCAAG 58.564 37.037 0.00 3.84 41.10 3.02
3158 3410 5.708736 TGGAATAACATTCCTAGAAGGCA 57.291 39.130 16.71 0.00 39.31 4.75
3159 3411 6.205658 GTCATGGAATAACATTCCTAGAAGGC 59.794 42.308 16.71 3.21 39.31 4.35
3161 3413 8.915057 ATGTCATGGAATAACATTCCTAGAAG 57.085 34.615 16.71 5.02 28.25 2.85
3219 3471 6.183360 CGGGCTTGTATGTTCTGAACAAATAT 60.183 38.462 25.26 12.59 45.86 1.28
3220 3472 5.123186 CGGGCTTGTATGTTCTGAACAAATA 59.877 40.000 25.26 12.63 45.86 1.40
3221 3473 4.082787 CGGGCTTGTATGTTCTGAACAAAT 60.083 41.667 25.26 13.60 45.86 2.32
3224 3476 2.422597 CGGGCTTGTATGTTCTGAACA 58.577 47.619 23.94 23.94 46.94 3.18
3243 3566 1.006832 CTACATTGGAGTTTCCGGCG 58.993 55.000 0.00 0.00 40.17 6.46
3246 3569 1.737793 GGTGCTACATTGGAGTTTCCG 59.262 52.381 0.00 0.00 40.17 4.30
3275 3598 1.283029 ACCTCATCTTCACCACCATGG 59.717 52.381 11.19 11.19 45.02 3.66
3276 3599 2.362736 CACCTCATCTTCACCACCATG 58.637 52.381 0.00 0.00 0.00 3.66
3277 3600 1.283029 CCACCTCATCTTCACCACCAT 59.717 52.381 0.00 0.00 0.00 3.55
3278 3601 0.692476 CCACCTCATCTTCACCACCA 59.308 55.000 0.00 0.00 0.00 4.17
3279 3602 0.693049 ACCACCTCATCTTCACCACC 59.307 55.000 0.00 0.00 0.00 4.61
3280 3603 1.072331 ACACCACCTCATCTTCACCAC 59.928 52.381 0.00 0.00 0.00 4.16
3281 3604 1.434188 ACACCACCTCATCTTCACCA 58.566 50.000 0.00 0.00 0.00 4.17
3282 3605 2.039084 AGAACACCACCTCATCTTCACC 59.961 50.000 0.00 0.00 0.00 4.02
3283 3606 3.070018 CAGAACACCACCTCATCTTCAC 58.930 50.000 0.00 0.00 0.00 3.18
3284 3607 2.550855 GCAGAACACCACCTCATCTTCA 60.551 50.000 0.00 0.00 0.00 3.02
3285 3608 2.079925 GCAGAACACCACCTCATCTTC 58.920 52.381 0.00 0.00 0.00 2.87
3286 3609 1.271597 GGCAGAACACCACCTCATCTT 60.272 52.381 0.00 0.00 0.00 2.40
3287 3610 0.326264 GGCAGAACACCACCTCATCT 59.674 55.000 0.00 0.00 0.00 2.90
3288 3611 0.036732 TGGCAGAACACCACCTCATC 59.963 55.000 0.00 0.00 30.29 2.92
3289 3612 0.700564 ATGGCAGAACACCACCTCAT 59.299 50.000 0.00 0.00 40.82 2.90
3290 3613 1.003118 GTATGGCAGAACACCACCTCA 59.997 52.381 0.00 0.00 40.82 3.86
3291 3614 1.003118 TGTATGGCAGAACACCACCTC 59.997 52.381 1.62 0.00 40.82 3.85
3292 3615 1.064003 TGTATGGCAGAACACCACCT 58.936 50.000 1.62 0.00 40.82 4.00
3293 3616 3.642938 TGTATGGCAGAACACCACC 57.357 52.632 1.62 0.00 40.82 4.61
3302 3625 5.777802 CTTCCACTATAGTCTGTATGGCAG 58.222 45.833 1.26 0.00 46.34 4.85
3303 3626 4.039245 GCTTCCACTATAGTCTGTATGGCA 59.961 45.833 1.26 0.00 0.00 4.92
3304 3627 4.561105 GCTTCCACTATAGTCTGTATGGC 58.439 47.826 1.26 0.00 0.00 4.40
3305 3628 4.321304 CGGCTTCCACTATAGTCTGTATGG 60.321 50.000 1.26 0.22 0.00 2.74
3306 3629 4.519350 TCGGCTTCCACTATAGTCTGTATG 59.481 45.833 1.26 0.00 0.00 2.39
3307 3630 4.519730 GTCGGCTTCCACTATAGTCTGTAT 59.480 45.833 1.26 0.00 0.00 2.29
3308 3631 3.881688 GTCGGCTTCCACTATAGTCTGTA 59.118 47.826 1.26 0.00 0.00 2.74
3309 3632 2.688958 GTCGGCTTCCACTATAGTCTGT 59.311 50.000 1.26 0.00 0.00 3.41
3310 3633 2.287069 CGTCGGCTTCCACTATAGTCTG 60.287 54.545 1.26 0.00 0.00 3.51
3311 3634 1.948145 CGTCGGCTTCCACTATAGTCT 59.052 52.381 1.26 0.00 0.00 3.24
3312 3635 1.001597 CCGTCGGCTTCCACTATAGTC 60.002 57.143 1.26 0.00 0.00 2.59
3313 3636 1.030457 CCGTCGGCTTCCACTATAGT 58.970 55.000 0.00 0.00 0.00 2.12
3314 3637 0.314302 CCCGTCGGCTTCCACTATAG 59.686 60.000 5.50 0.00 0.00 1.31
3315 3638 0.396139 ACCCGTCGGCTTCCACTATA 60.396 55.000 5.50 0.00 0.00 1.31
3316 3639 1.684734 ACCCGTCGGCTTCCACTAT 60.685 57.895 5.50 0.00 0.00 2.12
3317 3640 2.283388 ACCCGTCGGCTTCCACTA 60.283 61.111 5.50 0.00 0.00 2.74
3318 3641 4.003788 CACCCGTCGGCTTCCACT 62.004 66.667 5.50 0.00 0.00 4.00
3321 3644 4.754667 GACCACCCGTCGGCTTCC 62.755 72.222 5.50 0.00 0.00 3.46
3329 3652 2.567497 ATGTTCGACGACCACCCGT 61.567 57.895 0.00 0.00 46.43 5.28
3330 3653 2.092291 CATGTTCGACGACCACCCG 61.092 63.158 0.00 0.00 0.00 5.28
3331 3654 1.005394 ACATGTTCGACGACCACCC 60.005 57.895 0.00 0.00 0.00 4.61
3332 3655 1.897398 GCACATGTTCGACGACCACC 61.897 60.000 0.00 0.00 0.00 4.61
3333 3656 0.944311 AGCACATGTTCGACGACCAC 60.944 55.000 0.00 0.00 0.00 4.16
3341 3664 1.010935 AGCGTCTCAGCACATGTTCG 61.011 55.000 0.00 0.00 40.15 3.95
3342 3665 0.718343 GAGCGTCTCAGCACATGTTC 59.282 55.000 0.00 0.00 40.15 3.18
3352 3675 1.285950 CTCGTTGTGGAGCGTCTCA 59.714 57.895 8.71 0.00 31.08 3.27
3353 3676 4.154613 CTCGTTGTGGAGCGTCTC 57.845 61.111 0.00 0.00 0.00 3.36
3359 3682 0.803117 TACTCGAGCTCGTTGTGGAG 59.197 55.000 33.33 24.13 40.80 3.86
3365 3688 2.915463 CGTTTCAATACTCGAGCTCGTT 59.085 45.455 33.33 23.68 40.80 3.85
3366 3689 2.095364 ACGTTTCAATACTCGAGCTCGT 60.095 45.455 33.33 19.38 40.80 4.18
3367 3690 2.516923 ACGTTTCAATACTCGAGCTCG 58.483 47.619 30.03 30.03 41.45 5.03
3368 3691 4.262510 GTGTACGTTTCAATACTCGAGCTC 59.737 45.833 13.61 2.73 0.00 4.09
3369 3692 4.164294 GTGTACGTTTCAATACTCGAGCT 58.836 43.478 13.61 2.35 0.00 4.09
3370 3693 3.302699 GGTGTACGTTTCAATACTCGAGC 59.697 47.826 13.61 0.00 0.00 5.03
3371 3694 4.730657 AGGTGTACGTTTCAATACTCGAG 58.269 43.478 11.84 11.84 0.00 4.04
3372 3695 4.771590 AGGTGTACGTTTCAATACTCGA 57.228 40.909 0.00 0.00 0.00 4.04
3373 3696 5.872635 TCTAGGTGTACGTTTCAATACTCG 58.127 41.667 0.00 0.00 0.00 4.18
3377 3700 5.587388 CCCTCTAGGTGTACGTTTCAATA 57.413 43.478 0.00 0.00 0.00 1.90
3399 3722 0.109319 CTTGGCAATGCACCGGTAAC 60.109 55.000 6.87 2.61 0.00 2.50
3403 3726 3.682885 TGCTTGGCAATGCACCGG 61.683 61.111 16.72 0.00 34.76 5.28
3442 3765 0.391927 GCACCCGCCACTGTTACATA 60.392 55.000 0.00 0.00 0.00 2.29
3457 3780 2.970974 GAGAGCGCAACAAGGCACC 61.971 63.158 11.47 0.00 0.00 5.01
3466 3789 3.694566 TGTAGTATGAGAAGAGAGCGCAA 59.305 43.478 11.47 0.00 0.00 4.85
3475 3798 9.132923 TGGTAATCCTACTTGTAGTATGAGAAG 57.867 37.037 6.99 0.00 30.76 2.85
3483 3806 8.693625 GTGAACTATGGTAATCCTACTTGTAGT 58.306 37.037 6.99 0.00 34.23 2.73
3496 3819 3.583966 ACTTTCGGGGTGAACTATGGTAA 59.416 43.478 0.00 0.00 35.97 2.85
3499 3822 2.629051 GACTTTCGGGGTGAACTATGG 58.371 52.381 0.00 0.00 35.97 2.74
3500 3823 2.236395 AGGACTTTCGGGGTGAACTATG 59.764 50.000 0.00 0.00 35.97 2.23
3512 3835 3.318275 TCGGGATCAGAATAGGACTTTCG 59.682 47.826 0.00 0.00 0.00 3.46
3514 3837 4.342665 GTCTCGGGATCAGAATAGGACTTT 59.657 45.833 0.00 0.00 0.00 2.66
3515 3838 3.892588 GTCTCGGGATCAGAATAGGACTT 59.107 47.826 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.