Multiple sequence alignment - TraesCS3A01G065500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G065500 chr3A 100.000 4231 0 0 1 4231 38537724 38541954 0.000000e+00 7814.0
1 TraesCS3A01G065500 chr3A 85.135 592 77 6 1 588 38435547 38436131 2.820000e-166 595.0
2 TraesCS3A01G065500 chr3A 95.730 281 10 1 2845 3125 38643835 38644113 6.450000e-123 451.0
3 TraesCS3A01G065500 chr3A 90.698 86 8 0 3804 3889 38541612 38541527 9.610000e-22 115.0
4 TraesCS3A01G065500 chr3D 92.616 1923 92 22 2004 3906 29276744 29278636 0.000000e+00 2719.0
5 TraesCS3A01G065500 chr3D 89.094 1082 59 22 604 1663 29275317 29276361 0.000000e+00 1290.0
6 TraesCS3A01G065500 chr3D 85.674 356 32 8 1663 2007 29276318 29276665 1.450000e-94 357.0
7 TraesCS3A01G065500 chr3D 85.663 279 34 1 170 442 29227521 29227799 5.350000e-74 289.0
8 TraesCS3A01G065500 chr3D 92.021 188 12 3 3980 4164 29278651 29278838 1.170000e-65 261.0
9 TraesCS3A01G065500 chr3D 86.408 103 8 2 487 589 29227816 29227912 1.610000e-19 108.0
10 TraesCS3A01G065500 chr3D 90.541 74 7 0 537 610 29275219 29275292 9.680000e-17 99.0
11 TraesCS3A01G065500 chr3B 93.161 1389 76 10 2004 3385 49860236 49861612 0.000000e+00 2021.0
12 TraesCS3A01G065500 chr3B 88.713 1072 87 11 595 1663 49858869 49859909 0.000000e+00 1279.0
13 TraesCS3A01G065500 chr3B 88.924 632 41 5 1 610 49858229 49858853 0.000000e+00 752.0
14 TraesCS3A01G065500 chr3B 85.953 598 66 13 1 589 49779791 49780379 1.290000e-174 623.0
15 TraesCS3A01G065500 chr3B 84.928 345 25 11 1663 2007 49859866 49860183 1.470000e-84 324.0
16 TraesCS3A01G065500 chr3B 87.059 85 8 3 643 724 49780473 49780557 4.500000e-15 93.5
17 TraesCS3A01G065500 chr1A 93.333 90 3 2 3800 3889 342383774 342383688 3.430000e-26 130.0
18 TraesCS3A01G065500 chr1A 91.860 86 4 2 3804 3889 342383688 342383770 2.670000e-22 117.0
19 TraesCS3A01G065500 chr4A 94.872 78 3 1 3815 3892 363125699 363125775 2.070000e-23 121.0
20 TraesCS3A01G065500 chr4A 94.805 77 2 1 3813 3889 660083371 660083297 7.430000e-23 119.0
21 TraesCS3A01G065500 chr4A 93.506 77 3 2 3804 3880 659496276 659496350 3.460000e-21 113.0
22 TraesCS3A01G065500 chr4A 93.421 76 3 1 3814 3889 659496349 659496276 1.240000e-20 111.0
23 TraesCS3A01G065500 chr4A 89.535 86 6 3 3804 3889 660083297 660083379 5.790000e-19 106.0
24 TraesCS3A01G065500 chr4D 88.889 90 6 3 3804 3889 233107126 233107037 1.610000e-19 108.0
25 TraesCS3A01G065500 chrUn 96.429 56 2 0 3924 3979 216518761 216518816 4.500000e-15 93.5
26 TraesCS3A01G065500 chrUn 96.226 53 2 0 3924 3976 89259195 89259247 2.100000e-13 87.9
27 TraesCS3A01G065500 chrUn 94.643 56 3 0 3924 3979 216521605 216521550 2.100000e-13 87.9
28 TraesCS3A01G065500 chrUn 94.643 56 3 0 3924 3979 216522149 216522204 2.100000e-13 87.9
29 TraesCS3A01G065500 chrUn 94.643 56 3 0 3924 3979 346596653 346596708 2.100000e-13 87.9
30 TraesCS3A01G065500 chrUn 94.643 56 3 0 3924 3979 389444877 389444822 2.100000e-13 87.9
31 TraesCS3A01G065500 chrUn 94.643 56 3 0 3924 3979 396205519 396205574 2.100000e-13 87.9
32 TraesCS3A01G065500 chr6D 94.643 56 3 0 3924 3979 168251379 168251324 2.100000e-13 87.9
33 TraesCS3A01G065500 chr1D 94.643 56 3 0 3924 3979 254398268 254398323 2.100000e-13 87.9
34 TraesCS3A01G065500 chr2B 88.406 69 8 0 1168 1236 326478913 326478845 2.710000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G065500 chr3A 38537724 38541954 4230 False 7814.00 7814 100.0000 1 4231 1 chr3A.!!$F2 4230
1 TraesCS3A01G065500 chr3A 38435547 38436131 584 False 595.00 595 85.1350 1 588 1 chr3A.!!$F1 587
2 TraesCS3A01G065500 chr3D 29275219 29278838 3619 False 945.20 2719 89.9892 537 4164 5 chr3D.!!$F2 3627
3 TraesCS3A01G065500 chr3B 49858229 49861612 3383 False 1094.00 2021 88.9315 1 3385 4 chr3B.!!$F2 3384
4 TraesCS3A01G065500 chr3B 49779791 49780557 766 False 358.25 623 86.5060 1 724 2 chr3B.!!$F1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 576 0.323178 CCTTGCTCTCCCACTGCATT 60.323 55.0 0.0 0.00 36.55 3.56 F
1199 1303 0.036388 TTGAGGACAAGGCCGATGTC 60.036 55.0 27.2 27.20 45.08 3.06 F
2456 2657 0.036164 ATGCCGGCTGTCACAAGTTA 59.964 50.0 29.7 1.81 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1923 0.250858 CCATATGCGATGCCCAAGGA 60.251 55.0 0.0 0.0 0.00 3.36 R
3070 3286 0.038166 TGGTGTTTCCATCTCCAGCC 59.962 55.0 0.0 0.0 41.93 4.85 R
3958 4187 0.035152 TGCGTTCCATCATCTGGCTT 60.035 50.0 0.0 0.0 45.52 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
548 576 0.323178 CCTTGCTCTCCCACTGCATT 60.323 55.000 0.00 0.00 36.55 3.56
560 588 1.162181 ACTGCATTGCCGATGATCCG 61.162 55.000 6.12 0.00 38.03 4.18
589 617 1.685517 TGCCTCCATGAGAAGAGATCG 59.314 52.381 0.00 0.00 31.43 3.69
596 624 5.595885 TCCATGAGAAGAGATCGAATCAAC 58.404 41.667 0.00 0.00 0.00 3.18
655 736 0.800683 GTTTGCGCCCGCTTTTATCC 60.801 55.000 14.13 0.00 42.51 2.59
838 922 4.323477 CGGGCTTCGGTTGGGTCA 62.323 66.667 0.00 0.00 34.75 4.02
863 965 1.666311 CCGTGTCCGTCTCTGTTTCTC 60.666 57.143 0.00 0.00 0.00 2.87
881 983 2.043450 CTCGTGCTCCCCTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
882 984 2.363018 TCGTGCTCCCCTCCTCTG 60.363 66.667 0.00 0.00 0.00 3.35
883 985 2.681778 CGTGCTCCCCTCCTCTGT 60.682 66.667 0.00 0.00 0.00 3.41
885 987 1.599576 GTGCTCCCCTCCTCTGTTC 59.400 63.158 0.00 0.00 0.00 3.18
895 998 1.216710 CCTCTGTTCTCTCCGGTGC 59.783 63.158 0.00 0.00 0.00 5.01
1094 1198 2.906458 CTTCCTCTCGCCATGGCT 59.094 61.111 33.07 0.00 39.32 4.75
1110 1214 2.590092 CTTGGCCTCTTACGGGGG 59.410 66.667 3.32 0.00 0.00 5.40
1128 1232 1.476291 GGGGTGTTTTCTCTTGTCCGT 60.476 52.381 0.00 0.00 0.00 4.69
1199 1303 0.036388 TTGAGGACAAGGCCGATGTC 60.036 55.000 27.20 27.20 45.08 3.06
1259 1363 3.647771 GCCAACGGAGGAGGGGTT 61.648 66.667 0.00 0.00 0.00 4.11
1260 1364 2.295602 GCCAACGGAGGAGGGGTTA 61.296 63.158 0.00 0.00 0.00 2.85
1264 1368 0.546988 AACGGAGGAGGGGTTAGCTT 60.547 55.000 0.00 0.00 0.00 3.74
1309 1413 3.181457 TGGTACGTATGTGGGTTGTTGAA 60.181 43.478 0.00 0.00 0.00 2.69
1310 1414 3.814283 GGTACGTATGTGGGTTGTTGAAA 59.186 43.478 0.00 0.00 0.00 2.69
1311 1415 4.456566 GGTACGTATGTGGGTTGTTGAAAT 59.543 41.667 0.00 0.00 0.00 2.17
1312 1416 5.048573 GGTACGTATGTGGGTTGTTGAAATT 60.049 40.000 0.00 0.00 0.00 1.82
1336 1440 2.606725 CGGTTCTTCTTAGCTGCAGATG 59.393 50.000 20.43 0.00 0.00 2.90
1349 1453 1.421268 TGCAGATGGTTCTTCCTGTGT 59.579 47.619 0.00 0.00 37.07 3.72
1352 1456 2.816087 CAGATGGTTCTTCCTGTGTTGG 59.184 50.000 0.00 0.00 37.07 3.77
1356 1460 1.676006 GGTTCTTCCTGTGTTGGTGTG 59.324 52.381 0.00 0.00 0.00 3.82
1388 1493 1.286248 ATGCTCGGGTTAGGGAAGTT 58.714 50.000 0.00 0.00 0.00 2.66
1395 1500 3.007182 TCGGGTTAGGGAAGTTGTTGTAG 59.993 47.826 0.00 0.00 0.00 2.74
1411 1516 9.574516 AGTTGTTGTAGAGGATTTTAGATTTGT 57.425 29.630 0.00 0.00 0.00 2.83
1414 1519 9.349713 TGTTGTAGAGGATTTTAGATTTGTTGT 57.650 29.630 0.00 0.00 0.00 3.32
1518 1623 3.378112 GGAAATTGATGAAGATCGCACCA 59.622 43.478 0.00 0.00 0.00 4.17
1523 1628 5.389859 TTGATGAAGATCGCACCATTTTT 57.610 34.783 0.00 0.00 0.00 1.94
1529 1634 3.355378 AGATCGCACCATTTTTGGATCA 58.645 40.909 0.00 0.00 34.27 2.92
1531 1636 3.574284 TCGCACCATTTTTGGATCAAG 57.426 42.857 0.00 0.00 0.00 3.02
1553 1659 4.337274 AGGTTTGTTACAAAAGGGAACTCG 59.663 41.667 12.37 0.00 42.68 4.18
1577 1683 5.099042 ACAAACTCCTGTGAACACTAACT 57.901 39.130 6.51 0.00 0.00 2.24
1614 1720 3.070015 GGAAAATGCCACATATTGGGGAG 59.930 47.826 0.00 0.00 46.22 4.30
1618 1724 1.922447 TGCCACATATTGGGGAGAAGT 59.078 47.619 0.00 0.00 46.22 3.01
1619 1725 3.119319 TGCCACATATTGGGGAGAAGTA 58.881 45.455 0.00 0.00 46.22 2.24
1620 1726 3.721575 TGCCACATATTGGGGAGAAGTAT 59.278 43.478 0.00 0.00 46.22 2.12
1621 1727 4.074970 GCCACATATTGGGGAGAAGTATG 58.925 47.826 0.00 0.00 46.22 2.39
1622 1728 4.074970 CCACATATTGGGGAGAAGTATGC 58.925 47.826 0.00 0.00 46.22 3.14
1623 1729 4.074970 CACATATTGGGGAGAAGTATGCC 58.925 47.826 0.00 0.00 0.00 4.40
1624 1730 3.721575 ACATATTGGGGAGAAGTATGCCA 59.278 43.478 0.00 0.00 30.95 4.92
1625 1731 4.354987 ACATATTGGGGAGAAGTATGCCAT 59.645 41.667 0.00 0.00 30.95 4.40
1626 1732 5.551583 ACATATTGGGGAGAAGTATGCCATA 59.448 40.000 0.00 0.00 30.95 2.74
1627 1733 6.218315 ACATATTGGGGAGAAGTATGCCATAT 59.782 38.462 0.00 0.00 30.95 1.78
1628 1734 7.405858 ACATATTGGGGAGAAGTATGCCATATA 59.594 37.037 0.00 0.00 30.95 0.86
1629 1735 5.762179 TTGGGGAGAAGTATGCCATATAG 57.238 43.478 0.00 0.00 30.95 1.31
1630 1736 4.104086 TGGGGAGAAGTATGCCATATAGG 58.896 47.826 0.00 0.00 41.84 2.57
1631 1737 4.104831 GGGGAGAAGTATGCCATATAGGT 58.895 47.826 0.00 0.00 40.61 3.08
1632 1738 4.080863 GGGGAGAAGTATGCCATATAGGTG 60.081 50.000 0.00 0.00 40.61 4.00
1633 1739 4.777896 GGGAGAAGTATGCCATATAGGTGA 59.222 45.833 0.00 0.00 40.61 4.02
1634 1740 5.248477 GGGAGAAGTATGCCATATAGGTGAA 59.752 44.000 0.00 0.00 40.61 3.18
1635 1741 6.239887 GGGAGAAGTATGCCATATAGGTGAAA 60.240 42.308 0.00 0.00 40.61 2.69
1636 1742 7.398024 GGAGAAGTATGCCATATAGGTGAAAT 58.602 38.462 0.00 0.00 40.61 2.17
1637 1743 7.885399 GGAGAAGTATGCCATATAGGTGAAATT 59.115 37.037 0.00 0.00 40.61 1.82
1638 1744 8.854614 AGAAGTATGCCATATAGGTGAAATTC 57.145 34.615 0.00 0.00 40.61 2.17
1639 1745 8.439971 AGAAGTATGCCATATAGGTGAAATTCA 58.560 33.333 0.00 0.00 40.61 2.57
1640 1746 8.995027 AAGTATGCCATATAGGTGAAATTCAA 57.005 30.769 0.00 0.00 40.61 2.69
1641 1747 8.627208 AGTATGCCATATAGGTGAAATTCAAG 57.373 34.615 0.00 0.00 40.61 3.02
1642 1748 8.220559 AGTATGCCATATAGGTGAAATTCAAGT 58.779 33.333 0.00 0.00 40.61 3.16
1643 1749 9.502091 GTATGCCATATAGGTGAAATTCAAGTA 57.498 33.333 0.00 0.00 40.61 2.24
1644 1750 8.995027 ATGCCATATAGGTGAAATTCAAGTAA 57.005 30.769 0.00 0.00 40.61 2.24
1645 1751 8.995027 TGCCATATAGGTGAAATTCAAGTAAT 57.005 30.769 0.00 0.00 40.61 1.89
1646 1752 9.420118 TGCCATATAGGTGAAATTCAAGTAATT 57.580 29.630 0.00 0.00 38.45 1.40
1652 1758 9.912634 ATAGGTGAAATTCAAGTAATTTGTGTG 57.087 29.630 0.00 0.00 45.70 3.82
1653 1759 6.701400 AGGTGAAATTCAAGTAATTTGTGTGC 59.299 34.615 0.00 0.00 45.70 4.57
1654 1760 6.701400 GGTGAAATTCAAGTAATTTGTGTGCT 59.299 34.615 0.00 0.00 45.70 4.40
1655 1761 7.865385 GGTGAAATTCAAGTAATTTGTGTGCTA 59.135 33.333 0.00 0.00 45.70 3.49
1656 1762 9.410556 GTGAAATTCAAGTAATTTGTGTGCTAT 57.589 29.630 0.00 0.00 45.70 2.97
1659 1765 9.573133 AAATTCAAGTAATTTGTGTGCTATAGC 57.427 29.630 18.18 18.18 44.36 2.97
1660 1766 7.921786 TTCAAGTAATTTGTGTGCTATAGCT 57.078 32.000 24.61 5.26 38.75 3.32
1661 1767 7.921786 TCAAGTAATTTGTGTGCTATAGCTT 57.078 32.000 24.61 11.59 38.75 3.74
1667 1773 3.836365 TGTGTGCTATAGCTTATGCCA 57.164 42.857 24.61 10.30 42.66 4.92
1676 1782 6.211384 TGCTATAGCTTATGCCATAGAAGTGA 59.789 38.462 24.61 0.00 41.34 3.41
1696 1802 7.581213 AGTGAAATTCCAGTAATTTGTGTGA 57.419 32.000 0.71 0.00 45.70 3.58
1773 1879 6.821160 CCACTTTTGGTTCAAGTATTTTTGGT 59.179 34.615 0.00 0.00 38.23 3.67
1774 1880 7.982354 CCACTTTTGGTTCAAGTATTTTTGGTA 59.018 33.333 0.00 0.00 38.23 3.25
1793 1899 6.214191 TGGTACAAAAAGAAACTCATGCAA 57.786 33.333 0.00 0.00 31.92 4.08
1804 1910 2.775890 ACTCATGCAAACTCCTGTGAG 58.224 47.619 7.89 7.89 44.62 3.51
1817 1923 1.542547 CCTGTGAGCGGTACCAGTTTT 60.543 52.381 13.54 0.00 0.00 2.43
1822 1928 1.804748 GAGCGGTACCAGTTTTCCTTG 59.195 52.381 13.54 0.00 0.00 3.61
1827 1933 2.525368 GTACCAGTTTTCCTTGGGCAT 58.475 47.619 0.00 0.00 38.82 4.40
1837 1953 1.582968 CTTGGGCATCGCATATGGC 59.417 57.895 12.66 12.66 42.96 4.40
1894 2010 5.840149 TGTACCTAGTAACTGTTTGGGAGAA 59.160 40.000 0.00 0.00 0.00 2.87
1904 2020 2.368875 TGTTTGGGAGAAGGAGACTGTC 59.631 50.000 0.00 0.00 42.68 3.51
1920 2036 4.081642 AGACTGTCGGCATAGTGTTACATT 60.082 41.667 1.52 0.00 0.00 2.71
1921 2037 5.126545 AGACTGTCGGCATAGTGTTACATTA 59.873 40.000 1.52 0.00 0.00 1.90
1922 2038 5.107133 ACTGTCGGCATAGTGTTACATTAC 58.893 41.667 0.00 0.00 0.00 1.89
1923 2039 5.074584 TGTCGGCATAGTGTTACATTACA 57.925 39.130 0.00 0.00 0.00 2.41
1924 2040 5.666462 TGTCGGCATAGTGTTACATTACAT 58.334 37.500 0.00 0.00 0.00 2.29
1947 2063 7.864379 ACATGCTTTTGTGTCTATCTTTTGAAG 59.136 33.333 0.00 0.00 0.00 3.02
2026 2224 5.819825 ACTTGTTCTGTCAGAGGTTTTTC 57.180 39.130 2.12 0.00 0.00 2.29
2030 2228 4.876107 TGTTCTGTCAGAGGTTTTTCTCAC 59.124 41.667 2.12 0.00 36.30 3.51
2033 2231 2.777692 TGTCAGAGGTTTTTCTCACCCT 59.222 45.455 0.00 0.00 36.30 4.34
2040 2238 3.954258 AGGTTTTTCTCACCCTGTTTCAG 59.046 43.478 0.00 0.00 34.44 3.02
2052 2251 7.175104 TCACCCTGTTTCAGCTTTAGATTTAT 58.825 34.615 0.00 0.00 0.00 1.40
2061 2260 7.100458 TCAGCTTTAGATTTATTGCCTTTCC 57.900 36.000 0.00 0.00 0.00 3.13
2074 2273 1.545582 GCCTTTCCTATGCAGCACAAA 59.454 47.619 0.00 0.00 0.00 2.83
2086 2285 2.675889 GCAGCACAAAATCCATGAAGGG 60.676 50.000 0.00 0.00 38.24 3.95
2254 2455 0.673985 GCTTTTTGTCCTTCGGGCTT 59.326 50.000 0.00 0.00 34.44 4.35
2255 2456 1.068588 GCTTTTTGTCCTTCGGGCTTT 59.931 47.619 0.00 0.00 34.44 3.51
2273 2474 6.458342 CGGGCTTTTTATGTCCTTTAGATGTC 60.458 42.308 0.00 0.00 0.00 3.06
2328 2529 0.396435 AATGACGAGGCAAGTGGTCA 59.604 50.000 0.00 1.32 42.88 4.02
2443 2644 1.834188 AGTTACCTTGGAAATGCCGG 58.166 50.000 0.00 0.00 40.66 6.13
2456 2657 0.036164 ATGCCGGCTGTCACAAGTTA 59.964 50.000 29.70 1.81 0.00 2.24
2458 2659 0.602905 GCCGGCTGTCACAAGTTACT 60.603 55.000 22.15 0.00 0.00 2.24
2544 2749 6.098679 TGCTTAATTTGGACCAATTTGATCG 58.901 36.000 19.91 6.57 0.00 3.69
2650 2856 6.197364 ACTCAGAGGAACTGTATACTTTCG 57.803 41.667 4.17 0.00 45.86 3.46
2663 2875 6.859017 TGTATACTTTCGAGCTGTGTGAATA 58.141 36.000 4.17 0.00 0.00 1.75
2679 2891 6.882140 TGTGTGAATAAAGGACGATGGTATTT 59.118 34.615 0.00 0.00 0.00 1.40
2743 2955 6.015519 AGCACATAAACAACTTTAGATTGGCA 60.016 34.615 0.00 0.00 0.00 4.92
2761 2974 3.201930 TGGCATACATACTGGGTGATGTT 59.798 43.478 0.00 0.00 37.47 2.71
2839 3052 5.144692 TCAGTTTGATCTCTTGAGTCCTG 57.855 43.478 0.00 0.00 0.00 3.86
2863 3079 6.375174 TGCTGTGCCATACATAATTGATATCC 59.625 38.462 0.00 0.00 38.92 2.59
3070 3286 3.749226 AGTTGAAGAGAAAAGAGCCTGG 58.251 45.455 0.00 0.00 0.00 4.45
3098 3314 1.964373 GGAAACACCACCATCGCGT 60.964 57.895 5.77 0.00 38.79 6.01
3233 3449 5.119125 CAGAAAACGGAAATCAAAATGAGGC 59.881 40.000 0.00 0.00 0.00 4.70
3255 3471 3.209410 CCAGGTTAGCATTAGCCAAGAG 58.791 50.000 0.00 0.00 43.56 2.85
3431 3652 3.153919 TCTTACATTGGGCGCTTTTCTT 58.846 40.909 7.64 0.00 0.00 2.52
3549 3770 5.773575 TGTTGTTGTTGCTGTTAAAAGTCA 58.226 33.333 0.00 0.00 0.00 3.41
3550 3771 6.393990 TGTTGTTGTTGCTGTTAAAAGTCAT 58.606 32.000 0.00 0.00 0.00 3.06
3565 3786 2.368439 AGTCATGTGCATTATTGGCGT 58.632 42.857 0.00 0.00 0.00 5.68
3567 3788 3.944650 AGTCATGTGCATTATTGGCGTTA 59.055 39.130 0.00 0.00 0.00 3.18
3595 3816 0.438445 CTGTGCCGTGTTCATGTACG 59.562 55.000 11.15 11.15 39.83 3.67
3794 4015 6.675026 CATAGAATAACTGATTGGCATGGTG 58.325 40.000 0.00 0.00 0.00 4.17
3796 4017 4.641989 AGAATAACTGATTGGCATGGTGAC 59.358 41.667 0.00 0.00 0.00 3.67
3815 4036 3.192001 TGACACAATGTACTACCTCCGTC 59.808 47.826 0.00 0.00 0.00 4.79
3817 4038 2.105766 ACAATGTACTACCTCCGTCCC 58.894 52.381 0.00 0.00 0.00 4.46
3818 4039 2.104967 CAATGTACTACCTCCGTCCCA 58.895 52.381 0.00 0.00 0.00 4.37
3819 4040 2.698797 CAATGTACTACCTCCGTCCCAT 59.301 50.000 0.00 0.00 0.00 4.00
3820 4041 3.889859 ATGTACTACCTCCGTCCCATA 57.110 47.619 0.00 0.00 0.00 2.74
3821 4042 3.668141 TGTACTACCTCCGTCCCATAA 57.332 47.619 0.00 0.00 0.00 1.90
3822 4043 4.188937 TGTACTACCTCCGTCCCATAAT 57.811 45.455 0.00 0.00 0.00 1.28
3823 4044 5.323382 TGTACTACCTCCGTCCCATAATA 57.677 43.478 0.00 0.00 0.00 0.98
3824 4045 5.895807 TGTACTACCTCCGTCCCATAATAT 58.104 41.667 0.00 0.00 0.00 1.28
3825 4046 7.031415 TGTACTACCTCCGTCCCATAATATA 57.969 40.000 0.00 0.00 0.00 0.86
3826 4047 7.469343 TGTACTACCTCCGTCCCATAATATAA 58.531 38.462 0.00 0.00 0.00 0.98
3827 4048 7.613022 TGTACTACCTCCGTCCCATAATATAAG 59.387 40.741 0.00 0.00 0.00 1.73
3828 4049 6.797707 ACTACCTCCGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
3829 4050 7.420029 ACTACCTCCGTCCCATAATATAAGAT 58.580 38.462 0.00 0.00 0.00 2.40
3830 4051 6.793505 ACCTCCGTCCCATAATATAAGATC 57.206 41.667 0.00 0.00 0.00 2.75
3831 4052 6.503944 ACCTCCGTCCCATAATATAAGATCT 58.496 40.000 0.00 0.00 0.00 2.75
3832 4053 6.960542 ACCTCCGTCCCATAATATAAGATCTT 59.039 38.462 13.56 13.56 0.00 2.40
3833 4054 8.120538 ACCTCCGTCCCATAATATAAGATCTTA 58.879 37.037 17.32 17.32 0.00 2.10
3834 4055 9.148879 CCTCCGTCCCATAATATAAGATCTTAT 57.851 37.037 26.87 26.87 39.02 1.73
3906 4135 7.650660 AGGGAGTAGTTATAGTAACAGGTTCT 58.349 38.462 3.05 0.00 0.00 3.01
3907 4136 8.785859 AGGGAGTAGTTATAGTAACAGGTTCTA 58.214 37.037 3.05 0.00 0.00 2.10
3920 4149 8.157476 AGTAACAGGTTCTAACAGATTCACAAT 58.843 33.333 0.00 0.00 0.00 2.71
3921 4150 7.823745 AACAGGTTCTAACAGATTCACAATT 57.176 32.000 0.00 0.00 0.00 2.32
3922 4151 7.440523 ACAGGTTCTAACAGATTCACAATTC 57.559 36.000 0.00 0.00 0.00 2.17
3923 4152 6.998074 ACAGGTTCTAACAGATTCACAATTCA 59.002 34.615 0.00 0.00 0.00 2.57
3924 4153 7.173907 ACAGGTTCTAACAGATTCACAATTCAG 59.826 37.037 0.00 0.00 0.00 3.02
3925 4154 7.388776 CAGGTTCTAACAGATTCACAATTCAGA 59.611 37.037 0.00 0.00 0.00 3.27
3926 4155 7.605691 AGGTTCTAACAGATTCACAATTCAGAG 59.394 37.037 0.00 0.00 0.00 3.35
3927 4156 7.389053 GGTTCTAACAGATTCACAATTCAGAGT 59.611 37.037 0.00 0.00 0.00 3.24
3928 4157 8.439286 GTTCTAACAGATTCACAATTCAGAGTC 58.561 37.037 0.00 0.00 0.00 3.36
3929 4158 7.670364 TCTAACAGATTCACAATTCAGAGTCA 58.330 34.615 0.00 0.00 0.00 3.41
3930 4159 8.316946 TCTAACAGATTCACAATTCAGAGTCAT 58.683 33.333 0.00 0.00 0.00 3.06
3931 4160 7.756395 AACAGATTCACAATTCAGAGTCATT 57.244 32.000 0.00 0.00 0.00 2.57
3932 4161 7.756395 ACAGATTCACAATTCAGAGTCATTT 57.244 32.000 0.00 0.00 0.00 2.32
3933 4162 7.591165 ACAGATTCACAATTCAGAGTCATTTG 58.409 34.615 0.00 0.00 0.00 2.32
3934 4163 7.446319 ACAGATTCACAATTCAGAGTCATTTGA 59.554 33.333 0.00 0.00 0.00 2.69
3935 4164 8.459635 CAGATTCACAATTCAGAGTCATTTGAT 58.540 33.333 0.00 0.00 0.00 2.57
3936 4165 9.676861 AGATTCACAATTCAGAGTCATTTGATA 57.323 29.630 0.00 0.00 0.00 2.15
3939 4168 9.452287 TTCACAATTCAGAGTCATTTGATATGA 57.548 29.630 0.00 0.00 0.00 2.15
3940 4169 9.452287 TCACAATTCAGAGTCATTTGATATGAA 57.548 29.630 0.00 7.21 31.81 2.57
3943 4172 9.181805 CAATTCAGAGTCATTTGATATGAATGC 57.818 33.333 13.74 0.00 35.49 3.56
3944 4173 8.693120 ATTCAGAGTCATTTGATATGAATGCT 57.307 30.769 12.88 5.08 34.76 3.79
3945 4174 9.788889 ATTCAGAGTCATTTGATATGAATGCTA 57.211 29.630 12.88 0.00 34.76 3.49
3946 4175 8.599055 TCAGAGTCATTTGATATGAATGCTAC 57.401 34.615 0.00 0.50 35.10 3.58
3947 4176 8.206189 TCAGAGTCATTTGATATGAATGCTACA 58.794 33.333 0.00 0.00 35.10 2.74
3948 4177 9.000486 CAGAGTCATTTGATATGAATGCTACAT 58.000 33.333 0.00 0.00 35.10 2.29
3949 4178 9.000486 AGAGTCATTTGATATGAATGCTACATG 58.000 33.333 0.00 0.00 35.10 3.21
3950 4179 8.913487 AGTCATTTGATATGAATGCTACATGA 57.087 30.769 0.00 0.00 35.10 3.07
3951 4180 9.346005 AGTCATTTGATATGAATGCTACATGAA 57.654 29.630 0.00 0.00 35.10 2.57
3952 4181 9.608617 GTCATTTGATATGAATGCTACATGAAG 57.391 33.333 0.00 0.00 35.10 3.02
3953 4182 9.563748 TCATTTGATATGAATGCTACATGAAGA 57.436 29.630 0.00 0.00 35.10 2.87
3956 4185 8.735692 TTGATATGAATGCTACATGAAGAACA 57.264 30.769 0.00 0.00 0.00 3.18
3957 4186 8.913487 TGATATGAATGCTACATGAAGAACAT 57.087 30.769 0.00 0.00 40.17 2.71
3961 4190 7.019774 TGAATGCTACATGAAGAACATAAGC 57.980 36.000 0.00 0.00 42.48 3.09
3962 4191 6.038603 TGAATGCTACATGAAGAACATAAGCC 59.961 38.462 0.00 0.00 41.98 4.35
3963 4192 4.842574 TGCTACATGAAGAACATAAGCCA 58.157 39.130 0.00 0.00 41.98 4.75
3964 4193 4.877823 TGCTACATGAAGAACATAAGCCAG 59.122 41.667 0.00 0.00 41.98 4.85
3965 4194 5.118990 GCTACATGAAGAACATAAGCCAGA 58.881 41.667 0.00 0.00 39.34 3.86
3966 4195 5.762218 GCTACATGAAGAACATAAGCCAGAT 59.238 40.000 0.00 0.00 39.34 2.90
3967 4196 6.293298 GCTACATGAAGAACATAAGCCAGATG 60.293 42.308 0.00 0.00 39.34 2.90
3968 4197 5.748402 ACATGAAGAACATAAGCCAGATGA 58.252 37.500 0.00 0.00 37.46 2.92
3969 4198 6.363065 ACATGAAGAACATAAGCCAGATGAT 58.637 36.000 0.00 0.00 37.46 2.45
3970 4199 6.262496 ACATGAAGAACATAAGCCAGATGATG 59.738 38.462 0.00 0.00 37.46 3.07
3971 4200 5.768662 ATGAAGAACATAAGCCAGATGATGG 59.231 40.000 0.00 0.00 44.10 3.51
3972 4201 6.410041 ATGAAGAACATAAGCCAGATGATGGA 60.410 38.462 0.00 0.00 44.05 3.41
3973 4202 7.856687 ATGAAGAACATAAGCCAGATGATGGAA 60.857 37.037 0.00 0.00 44.05 3.53
4011 4240 6.515696 CGATATTCACTCTGTTGCCTCTCATA 60.516 42.308 0.00 0.00 0.00 2.15
4012 4241 5.627182 ATTCACTCTGTTGCCTCTCATAT 57.373 39.130 0.00 0.00 0.00 1.78
4013 4242 4.662468 TCACTCTGTTGCCTCTCATATC 57.338 45.455 0.00 0.00 0.00 1.63
4014 4243 4.285020 TCACTCTGTTGCCTCTCATATCT 58.715 43.478 0.00 0.00 0.00 1.98
4015 4244 4.099113 TCACTCTGTTGCCTCTCATATCTG 59.901 45.833 0.00 0.00 0.00 2.90
4016 4245 3.181467 ACTCTGTTGCCTCTCATATCTGC 60.181 47.826 0.00 0.00 0.00 4.26
4017 4246 3.036819 TCTGTTGCCTCTCATATCTGCT 58.963 45.455 0.00 0.00 0.00 4.24
4018 4247 3.132160 CTGTTGCCTCTCATATCTGCTG 58.868 50.000 0.00 0.00 0.00 4.41
4019 4248 2.158856 TGTTGCCTCTCATATCTGCTGG 60.159 50.000 0.00 0.00 0.00 4.85
4020 4249 2.092598 TGCCTCTCATATCTGCTGGA 57.907 50.000 0.00 0.00 0.00 3.86
4021 4250 1.969208 TGCCTCTCATATCTGCTGGAG 59.031 52.381 0.00 0.00 0.00 3.86
4133 4365 0.605319 TAGGCTCGCAACCCTTTGTG 60.605 55.000 0.00 0.00 43.50 3.33
4139 4371 0.387622 CGCAACCCTTTGTGATGCTG 60.388 55.000 0.00 0.00 44.70 4.41
4147 4379 0.824595 TTTGTGATGCTGCCTGCTGT 60.825 50.000 0.00 0.00 43.37 4.40
4160 4392 0.883153 CTGCTGTACCATGCTTTGCA 59.117 50.000 0.00 0.00 44.86 4.08
4164 4396 1.470098 CTGTACCATGCTTTGCAGACC 59.530 52.381 0.00 0.00 43.65 3.85
4165 4397 1.073763 TGTACCATGCTTTGCAGACCT 59.926 47.619 0.00 0.00 43.65 3.85
4166 4398 2.304470 TGTACCATGCTTTGCAGACCTA 59.696 45.455 0.00 0.00 43.65 3.08
4167 4399 2.814805 ACCATGCTTTGCAGACCTAT 57.185 45.000 0.00 0.00 43.65 2.57
4168 4400 3.931907 ACCATGCTTTGCAGACCTATA 57.068 42.857 0.00 0.00 43.65 1.31
4169 4401 4.235079 ACCATGCTTTGCAGACCTATAA 57.765 40.909 0.00 0.00 43.65 0.98
4170 4402 4.202441 ACCATGCTTTGCAGACCTATAAG 58.798 43.478 0.00 0.00 43.65 1.73
4171 4403 3.004106 CCATGCTTTGCAGACCTATAAGC 59.996 47.826 9.56 9.56 43.65 3.09
4172 4404 3.348647 TGCTTTGCAGACCTATAAGCA 57.651 42.857 14.12 14.12 46.23 3.91
4173 4405 3.889815 TGCTTTGCAGACCTATAAGCAT 58.110 40.909 14.12 0.00 44.30 3.79
4174 4406 4.272489 TGCTTTGCAGACCTATAAGCATT 58.728 39.130 14.12 0.00 44.30 3.56
4175 4407 4.706476 TGCTTTGCAGACCTATAAGCATTT 59.294 37.500 14.12 0.00 44.30 2.32
4176 4408 5.039333 GCTTTGCAGACCTATAAGCATTTG 58.961 41.667 11.23 0.00 40.58 2.32
4177 4409 5.581126 TTTGCAGACCTATAAGCATTTGG 57.419 39.130 0.00 0.00 36.80 3.28
4178 4410 4.235079 TGCAGACCTATAAGCATTTGGT 57.765 40.909 0.00 0.00 31.05 3.67
4179 4411 4.599041 TGCAGACCTATAAGCATTTGGTT 58.401 39.130 0.28 0.28 39.33 3.67
4180 4412 4.398988 TGCAGACCTATAAGCATTTGGTTG 59.601 41.667 5.31 0.00 37.00 3.77
4181 4413 4.399303 GCAGACCTATAAGCATTTGGTTGT 59.601 41.667 5.31 1.47 37.00 3.32
4182 4414 5.588648 GCAGACCTATAAGCATTTGGTTGTA 59.411 40.000 5.31 2.55 37.00 2.41
4183 4415 6.263168 GCAGACCTATAAGCATTTGGTTGTAT 59.737 38.462 5.31 0.00 37.00 2.29
4184 4416 7.444183 GCAGACCTATAAGCATTTGGTTGTATA 59.556 37.037 5.31 0.00 37.00 1.47
4185 4417 9.507329 CAGACCTATAAGCATTTGGTTGTATAT 57.493 33.333 5.31 0.00 37.00 0.86
4186 4418 9.726438 AGACCTATAAGCATTTGGTTGTATATC 57.274 33.333 5.31 4.31 37.00 1.63
4187 4419 9.502091 GACCTATAAGCATTTGGTTGTATATCA 57.498 33.333 5.31 0.00 37.00 2.15
4188 4420 9.507329 ACCTATAAGCATTTGGTTGTATATCAG 57.493 33.333 5.31 0.00 37.00 2.90
4189 4421 8.454106 CCTATAAGCATTTGGTTGTATATCAGC 58.546 37.037 5.31 0.00 37.00 4.26
4190 4422 9.224267 CTATAAGCATTTGGTTGTATATCAGCT 57.776 33.333 5.31 0.00 37.00 4.24
4191 4423 5.762825 AGCATTTGGTTGTATATCAGCTG 57.237 39.130 7.63 7.63 0.00 4.24
4192 4424 5.439721 AGCATTTGGTTGTATATCAGCTGA 58.560 37.500 20.79 20.79 0.00 4.26
4193 4425 5.297776 AGCATTTGGTTGTATATCAGCTGAC 59.702 40.000 20.97 7.51 0.00 3.51
4194 4426 5.741425 CATTTGGTTGTATATCAGCTGACG 58.259 41.667 20.97 0.00 0.00 4.35
4195 4427 4.729227 TTGGTTGTATATCAGCTGACGA 57.271 40.909 20.97 10.86 0.00 4.20
4196 4428 4.729227 TGGTTGTATATCAGCTGACGAA 57.271 40.909 20.97 8.21 0.00 3.85
4197 4429 5.276461 TGGTTGTATATCAGCTGACGAAT 57.724 39.130 20.97 15.12 0.00 3.34
4198 4430 5.289595 TGGTTGTATATCAGCTGACGAATC 58.710 41.667 20.97 8.27 0.00 2.52
4199 4431 5.163457 TGGTTGTATATCAGCTGACGAATCA 60.163 40.000 20.97 10.75 0.00 2.57
4200 4432 5.753438 GGTTGTATATCAGCTGACGAATCAA 59.247 40.000 20.97 16.85 33.30 2.57
4201 4433 6.257849 GGTTGTATATCAGCTGACGAATCAAA 59.742 38.462 20.97 5.32 33.30 2.69
4202 4434 6.828502 TGTATATCAGCTGACGAATCAAAC 57.171 37.500 20.97 9.32 33.30 2.93
4203 4435 6.337356 TGTATATCAGCTGACGAATCAAACA 58.663 36.000 20.97 11.70 33.30 2.83
4204 4436 6.816140 TGTATATCAGCTGACGAATCAAACAA 59.184 34.615 20.97 0.00 33.30 2.83
4205 4437 6.932356 ATATCAGCTGACGAATCAAACAAT 57.068 33.333 20.97 0.10 33.30 2.71
4206 4438 4.668576 TCAGCTGACGAATCAAACAATC 57.331 40.909 13.74 0.00 33.30 2.67
4207 4439 4.064388 TCAGCTGACGAATCAAACAATCA 58.936 39.130 13.74 0.00 33.30 2.57
4208 4440 4.514816 TCAGCTGACGAATCAAACAATCAA 59.485 37.500 13.74 0.00 33.30 2.57
4209 4441 4.614284 CAGCTGACGAATCAAACAATCAAC 59.386 41.667 8.42 0.00 33.30 3.18
4210 4442 4.516698 AGCTGACGAATCAAACAATCAACT 59.483 37.500 0.00 0.00 33.30 3.16
4211 4443 5.700832 AGCTGACGAATCAAACAATCAACTA 59.299 36.000 0.00 0.00 33.30 2.24
4212 4444 6.204688 AGCTGACGAATCAAACAATCAACTAA 59.795 34.615 0.00 0.00 33.30 2.24
4213 4445 6.303259 GCTGACGAATCAAACAATCAACTAAC 59.697 38.462 0.00 0.00 33.30 2.34
4214 4446 6.359545 TGACGAATCAAACAATCAACTAACG 58.640 36.000 0.00 0.00 0.00 3.18
4215 4447 6.018588 TGACGAATCAAACAATCAACTAACGT 60.019 34.615 0.00 0.00 0.00 3.99
4216 4448 6.133392 ACGAATCAAACAATCAACTAACGTG 58.867 36.000 0.00 0.00 0.00 4.49
4217 4449 6.018588 ACGAATCAAACAATCAACTAACGTGA 60.019 34.615 0.00 0.00 0.00 4.35
4218 4450 6.299966 CGAATCAAACAATCAACTAACGTGAC 59.700 38.462 0.00 0.00 0.00 3.67
4219 4451 6.612247 ATCAAACAATCAACTAACGTGACA 57.388 33.333 0.00 0.00 0.00 3.58
4220 4452 6.612247 TCAAACAATCAACTAACGTGACAT 57.388 33.333 0.00 0.00 0.00 3.06
4221 4453 6.426327 TCAAACAATCAACTAACGTGACATG 58.574 36.000 0.00 0.00 0.00 3.21
4222 4454 5.356882 AACAATCAACTAACGTGACATGG 57.643 39.130 0.00 0.00 0.00 3.66
4223 4455 3.751175 ACAATCAACTAACGTGACATGGG 59.249 43.478 0.00 0.00 0.00 4.00
4224 4456 1.803334 TCAACTAACGTGACATGGGC 58.197 50.000 0.00 0.00 0.00 5.36
4225 4457 0.802494 CAACTAACGTGACATGGGCC 59.198 55.000 0.00 0.00 0.00 5.80
4226 4458 0.690762 AACTAACGTGACATGGGCCT 59.309 50.000 4.53 0.00 0.00 5.19
4227 4459 0.690762 ACTAACGTGACATGGGCCTT 59.309 50.000 4.53 0.00 0.00 4.35
4228 4460 1.086696 CTAACGTGACATGGGCCTTG 58.913 55.000 17.21 17.21 0.00 3.61
4229 4461 0.687920 TAACGTGACATGGGCCTTGA 59.312 50.000 24.70 1.52 0.00 3.02
4230 4462 0.179004 AACGTGACATGGGCCTTGAA 60.179 50.000 24.70 10.39 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
364 371 2.124695 GGATCTTGTCGGTGGGGC 60.125 66.667 0.00 0.00 0.00 5.80
375 382 4.162690 GGCGCTGGACCGGATCTT 62.163 66.667 9.46 0.00 0.00 2.40
403 410 1.745489 GACGGCAACTGGGTCATCC 60.745 63.158 0.00 0.00 0.00 3.51
404 411 2.100631 CGACGGCAACTGGGTCATC 61.101 63.158 0.00 0.00 0.00 2.92
406 413 3.509137 GACGACGGCAACTGGGTCA 62.509 63.158 0.00 0.00 0.00 4.02
460 467 4.208686 GAGCGCAGTACCTCCGGG 62.209 72.222 11.47 0.00 38.88 5.73
589 617 6.668541 TCCATCGATCTTTTGAGTTGATTC 57.331 37.500 0.00 0.00 0.00 2.52
655 736 0.802494 GTAGCACCCACGAAACCATG 59.198 55.000 0.00 0.00 0.00 3.66
783 867 1.076549 GGGCCCACTTGTCATGGAA 59.923 57.895 19.95 0.00 39.87 3.53
837 921 2.027625 GAGACGGACACGGGCTTTG 61.028 63.158 0.00 0.00 46.48 2.77
838 922 2.207924 AGAGACGGACACGGGCTTT 61.208 57.895 0.00 0.00 46.48 3.51
863 965 3.151022 GAGGAGGGGAGCACGAGG 61.151 72.222 0.00 0.00 0.00 4.63
881 983 1.228894 AGGAGCACCGGAGAGAACA 60.229 57.895 9.46 0.00 41.83 3.18
882 984 1.513622 GAGGAGCACCGGAGAGAAC 59.486 63.158 9.46 0.00 41.83 3.01
883 985 1.682684 GGAGGAGCACCGGAGAGAA 60.683 63.158 9.46 0.00 41.83 2.87
885 987 3.151022 GGGAGGAGCACCGGAGAG 61.151 72.222 9.46 0.00 41.83 3.20
895 998 3.578272 CTCGTCTCGCGGGAGGAG 61.578 72.222 35.79 35.79 45.67 3.69
922 1025 5.606761 TCCAATCTAGGGTTAGGGTTTAGT 58.393 41.667 0.00 0.00 0.00 2.24
993 1097 4.847516 TTCGCCGACATCTCGCCG 62.848 66.667 0.00 0.00 41.91 6.46
994 1098 2.884087 TTCTTCGCCGACATCTCGCC 62.884 60.000 0.00 0.00 38.70 5.54
995 1099 1.475441 CTTCTTCGCCGACATCTCGC 61.475 60.000 0.00 0.00 38.70 5.03
996 1100 0.867753 CCTTCTTCGCCGACATCTCG 60.868 60.000 0.00 0.00 39.83 4.04
1075 1179 2.587194 CCATGGCGAGAGGAAGCG 60.587 66.667 0.00 0.00 0.00 4.68
1110 1214 2.031683 CACACGGACAAGAGAAAACACC 59.968 50.000 0.00 0.00 0.00 4.16
1259 1363 1.592400 CGACCTGGACCGACAAGCTA 61.592 60.000 0.00 0.00 0.00 3.32
1260 1364 2.932234 CGACCTGGACCGACAAGCT 61.932 63.158 0.00 0.00 0.00 3.74
1292 1396 4.481463 GGAATTTCAACAACCCACATACG 58.519 43.478 0.00 0.00 0.00 3.06
1293 1397 4.617298 CGGGAATTTCAACAACCCACATAC 60.617 45.833 0.00 0.00 40.45 2.39
1294 1398 3.508012 CGGGAATTTCAACAACCCACATA 59.492 43.478 0.00 0.00 40.45 2.29
1295 1399 2.298729 CGGGAATTTCAACAACCCACAT 59.701 45.455 0.00 0.00 40.45 3.21
1309 1413 3.610911 CAGCTAAGAAGAACCGGGAATT 58.389 45.455 6.32 0.00 0.00 2.17
1310 1414 2.681097 GCAGCTAAGAAGAACCGGGAAT 60.681 50.000 6.32 0.00 0.00 3.01
1311 1415 1.338769 GCAGCTAAGAAGAACCGGGAA 60.339 52.381 6.32 0.00 0.00 3.97
1312 1416 0.249398 GCAGCTAAGAAGAACCGGGA 59.751 55.000 6.32 0.00 0.00 5.14
1336 1440 1.676006 CACACCAACACAGGAAGAACC 59.324 52.381 0.00 0.00 39.35 3.62
1349 1453 0.333312 ACCCAACCAAGACACACCAA 59.667 50.000 0.00 0.00 0.00 3.67
1352 1456 1.539827 GCATACCCAACCAAGACACAC 59.460 52.381 0.00 0.00 0.00 3.82
1356 1460 1.369625 CGAGCATACCCAACCAAGAC 58.630 55.000 0.00 0.00 0.00 3.01
1388 1493 9.349713 ACAACAAATCTAAAATCCTCTACAACA 57.650 29.630 0.00 0.00 0.00 3.33
1412 1517 9.911138 TCGTACAGTCTTAATAACAACATAACA 57.089 29.630 0.00 0.00 0.00 2.41
1482 1587 0.614415 ATTTCCATTTGCGCAGGGGA 60.614 50.000 19.02 19.02 0.00 4.81
1518 1623 9.454859 TTTTGTAACAAACCTTGATCCAAAAAT 57.545 25.926 0.00 0.00 34.43 1.82
1523 1628 5.069781 CCCTTTTGTAACAAACCTTGATCCA 59.930 40.000 0.00 0.00 0.00 3.41
1529 1634 5.163591 CGAGTTCCCTTTTGTAACAAACCTT 60.164 40.000 0.00 0.00 0.00 3.50
1531 1636 4.603985 CGAGTTCCCTTTTGTAACAAACC 58.396 43.478 0.00 0.00 0.00 3.27
1553 1659 2.017049 AGTGTTCACAGGAGTTTGTGC 58.983 47.619 5.74 0.00 46.24 4.57
1611 1717 6.360370 TTCACCTATATGGCATACTTCTCC 57.640 41.667 9.83 0.00 40.22 3.71
1614 1720 8.621532 TGAATTTCACCTATATGGCATACTTC 57.378 34.615 9.83 0.00 40.22 3.01
1619 1725 8.995027 TTACTTGAATTTCACCTATATGGCAT 57.005 30.769 4.88 4.88 40.22 4.40
1620 1726 8.995027 ATTACTTGAATTTCACCTATATGGCA 57.005 30.769 0.00 0.00 40.22 4.92
1626 1732 9.912634 CACACAAATTACTTGAATTTCACCTAT 57.087 29.630 0.00 0.00 44.35 2.57
1627 1733 7.865385 GCACACAAATTACTTGAATTTCACCTA 59.135 33.333 0.00 0.00 44.35 3.08
1628 1734 6.701400 GCACACAAATTACTTGAATTTCACCT 59.299 34.615 0.00 0.00 44.35 4.00
1629 1735 6.701400 AGCACACAAATTACTTGAATTTCACC 59.299 34.615 0.00 0.00 44.35 4.02
1630 1736 7.698836 AGCACACAAATTACTTGAATTTCAC 57.301 32.000 0.00 0.00 44.35 3.18
1633 1739 9.573133 GCTATAGCACACAAATTACTTGAATTT 57.427 29.630 20.01 0.00 43.19 1.82
1634 1740 8.960591 AGCTATAGCACACAAATTACTTGAATT 58.039 29.630 26.07 0.00 45.16 2.17
1635 1741 8.511604 AGCTATAGCACACAAATTACTTGAAT 57.488 30.769 26.07 0.00 45.16 2.57
1636 1742 7.921786 AGCTATAGCACACAAATTACTTGAA 57.078 32.000 26.07 0.00 45.16 2.69
1637 1743 7.921786 AAGCTATAGCACACAAATTACTTGA 57.078 32.000 26.07 0.00 45.16 3.02
1638 1744 9.655769 CATAAGCTATAGCACACAAATTACTTG 57.344 33.333 26.07 7.06 45.16 3.16
1639 1745 8.345565 GCATAAGCTATAGCACACAAATTACTT 58.654 33.333 26.07 9.64 45.16 2.24
1640 1746 7.041098 GGCATAAGCTATAGCACACAAATTACT 60.041 37.037 26.07 0.00 45.16 2.24
1641 1747 7.078228 GGCATAAGCTATAGCACACAAATTAC 58.922 38.462 26.07 5.22 45.16 1.89
1642 1748 6.770303 TGGCATAAGCTATAGCACACAAATTA 59.230 34.615 26.07 13.86 45.16 1.40
1643 1749 5.593909 TGGCATAAGCTATAGCACACAAATT 59.406 36.000 26.07 12.17 45.16 1.82
1644 1750 5.132502 TGGCATAAGCTATAGCACACAAAT 58.867 37.500 26.07 7.43 45.16 2.32
1645 1751 4.522114 TGGCATAAGCTATAGCACACAAA 58.478 39.130 26.07 5.46 45.16 2.83
1646 1752 4.149511 TGGCATAAGCTATAGCACACAA 57.850 40.909 26.07 7.16 45.16 3.33
1647 1753 3.836365 TGGCATAAGCTATAGCACACA 57.164 42.857 26.07 12.72 45.16 3.72
1655 1761 8.930846 AATTTCACTTCTATGGCATAAGCTAT 57.069 30.769 8.79 0.00 44.74 2.97
1656 1762 7.445402 GGAATTTCACTTCTATGGCATAAGCTA 59.555 37.037 8.79 0.00 41.70 3.32
1657 1763 6.264067 GGAATTTCACTTCTATGGCATAAGCT 59.736 38.462 8.79 0.00 41.70 3.74
1658 1764 6.039717 TGGAATTTCACTTCTATGGCATAAGC 59.960 38.462 8.79 0.00 41.10 3.09
1659 1765 7.284034 ACTGGAATTTCACTTCTATGGCATAAG 59.716 37.037 8.79 8.45 0.00 1.73
1660 1766 7.118723 ACTGGAATTTCACTTCTATGGCATAA 58.881 34.615 8.79 0.00 0.00 1.90
1661 1767 6.662755 ACTGGAATTTCACTTCTATGGCATA 58.337 36.000 7.06 7.06 0.00 3.14
1696 1802 4.040952 CAGGGGTCAGCAACTAAGCTATAT 59.959 45.833 0.00 0.00 44.54 0.86
1702 1808 1.021390 CGCAGGGGTCAGCAACTAAG 61.021 60.000 0.00 0.00 0.00 2.18
1709 1815 4.704833 TGCTTCGCAGGGGTCAGC 62.705 66.667 0.00 0.00 33.32 4.26
1726 1832 2.571653 TGTGATTCTTCATCGGTTCCCT 59.428 45.455 0.00 0.00 34.08 4.20
1729 1835 3.125316 GTGGTGTGATTCTTCATCGGTTC 59.875 47.826 0.00 0.00 34.08 3.62
1732 1838 2.977914 AGTGGTGTGATTCTTCATCGG 58.022 47.619 0.00 0.00 34.08 4.18
1769 1875 6.214191 TGCATGAGTTTCTTTTTGTACCAA 57.786 33.333 0.00 0.00 0.00 3.67
1770 1876 5.843673 TGCATGAGTTTCTTTTTGTACCA 57.156 34.783 0.00 0.00 0.00 3.25
1771 1877 6.756542 AGTTTGCATGAGTTTCTTTTTGTACC 59.243 34.615 0.00 0.00 0.00 3.34
1773 1879 6.978080 GGAGTTTGCATGAGTTTCTTTTTGTA 59.022 34.615 0.00 0.00 0.00 2.41
1774 1880 5.812127 GGAGTTTGCATGAGTTTCTTTTTGT 59.188 36.000 0.00 0.00 0.00 2.83
1793 1899 0.830444 TGGTACCGCTCACAGGAGTT 60.830 55.000 7.57 0.00 43.37 3.01
1804 1910 0.879090 CCAAGGAAAACTGGTACCGC 59.121 55.000 7.57 0.00 0.00 5.68
1817 1923 0.250858 CCATATGCGATGCCCAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
1837 1953 5.812642 AGCACATTTCTAGTCATACTTTCCG 59.187 40.000 0.00 0.00 0.00 4.30
1842 1958 7.721286 GCATAAGCACATTTCTAGTCATACT 57.279 36.000 0.00 0.00 41.58 2.12
1872 1988 5.482878 CCTTCTCCCAAACAGTTACTAGGTA 59.517 44.000 0.00 0.00 0.00 3.08
1894 2010 1.107114 CACTATGCCGACAGTCTCCT 58.893 55.000 0.00 0.00 0.00 3.69
1920 2036 8.389779 TCAAAAGATAGACACAAAAGCATGTA 57.610 30.769 0.00 0.00 30.84 2.29
1921 2037 7.275888 TCAAAAGATAGACACAAAAGCATGT 57.724 32.000 0.00 0.00 0.00 3.21
1922 2038 7.864379 ACTTCAAAAGATAGACACAAAAGCATG 59.136 33.333 0.00 0.00 0.00 4.06
1923 2039 7.945134 ACTTCAAAAGATAGACACAAAAGCAT 58.055 30.769 0.00 0.00 0.00 3.79
1924 2040 7.333528 ACTTCAAAAGATAGACACAAAAGCA 57.666 32.000 0.00 0.00 0.00 3.91
1947 2063 4.418392 CAGGCTGCAAAGTATGATTGAAC 58.582 43.478 0.00 0.00 0.00 3.18
2007 2123 4.876107 GTGAGAAAAACCTCTGACAGAACA 59.124 41.667 6.61 0.00 30.71 3.18
2008 2124 4.273724 GGTGAGAAAAACCTCTGACAGAAC 59.726 45.833 6.61 0.00 31.81 3.01
2009 2125 4.451900 GGTGAGAAAAACCTCTGACAGAA 58.548 43.478 6.61 0.00 31.81 3.02
2026 2224 4.008074 TCTAAAGCTGAAACAGGGTGAG 57.992 45.455 0.00 0.00 31.21 3.51
2030 2228 6.753744 GCAATAAATCTAAAGCTGAAACAGGG 59.246 38.462 0.00 0.00 31.21 4.45
2033 2231 7.466746 AGGCAATAAATCTAAAGCTGAAACA 57.533 32.000 0.00 0.00 0.00 2.83
2040 2238 7.596621 GCATAGGAAAGGCAATAAATCTAAAGC 59.403 37.037 0.00 0.00 0.00 3.51
2052 2251 1.176527 GTGCTGCATAGGAAAGGCAA 58.823 50.000 5.27 0.00 37.06 4.52
2061 2260 4.642445 TCATGGATTTTGTGCTGCATAG 57.358 40.909 5.27 0.00 0.00 2.23
2074 2273 5.717119 AAGCTAGTAACCCTTCATGGATT 57.283 39.130 0.00 0.00 38.35 3.01
2086 2285 6.080406 GCAGTGACAAATCAAAGCTAGTAAC 58.920 40.000 0.00 0.00 36.31 2.50
2165 2366 1.561542 CCCTTTACAGCTCCTGGATGT 59.438 52.381 7.97 7.97 46.91 3.06
2167 2368 1.840635 GACCCTTTACAGCTCCTGGAT 59.159 52.381 0.00 0.00 35.51 3.41
2254 2455 7.610305 GGGAACAGACATCTAAAGGACATAAAA 59.390 37.037 0.00 0.00 0.00 1.52
2255 2456 7.037586 AGGGAACAGACATCTAAAGGACATAAA 60.038 37.037 0.00 0.00 0.00 1.40
2273 2474 2.568623 AGGCTTGTGTAAGGGAACAG 57.431 50.000 0.00 0.00 34.40 3.16
2328 2529 1.956477 GTGAAGCTGATTGTGTTGGGT 59.044 47.619 0.00 0.00 0.00 4.51
2443 2644 6.061231 AGCTAAAAAGTAACTTGTGACAGC 57.939 37.500 0.00 0.00 0.00 4.40
2456 2657 6.374333 TCAATCTTGGCGAATAGCTAAAAAGT 59.626 34.615 0.00 0.00 45.72 2.66
2458 2659 6.751514 TCAATCTTGGCGAATAGCTAAAAA 57.248 33.333 0.00 0.00 45.72 1.94
2517 2722 6.825610 TCAAATTGGTCCAAATTAAGCAACT 58.174 32.000 8.75 0.00 35.89 3.16
2555 2760 6.833933 ACAAAGTGGAATCTACAGGTTTTCTT 59.166 34.615 0.00 0.00 0.00 2.52
2650 2856 3.585862 TCGTCCTTTATTCACACAGCTC 58.414 45.455 0.00 0.00 0.00 4.09
2720 2932 9.289303 GTATGCCAATCTAAAGTTGTTTATGTG 57.711 33.333 0.00 0.00 0.00 3.21
2863 3079 4.756642 TGCAAGTGTTCTTCTGGTGAATAG 59.243 41.667 0.00 0.00 0.00 1.73
2897 3113 8.586879 AAGATAGCTGATGCAGACATATACTA 57.413 34.615 0.00 0.00 42.74 1.82
2898 3114 7.479352 AAGATAGCTGATGCAGACATATACT 57.521 36.000 0.00 0.00 42.74 2.12
3070 3286 0.038166 TGGTGTTTCCATCTCCAGCC 59.962 55.000 0.00 0.00 41.93 4.85
3098 3314 1.608025 CCAGTCGTCTTTGGCAGCTTA 60.608 52.381 0.00 0.00 0.00 3.09
3233 3449 2.092429 TCTTGGCTAATGCTAACCTGGG 60.092 50.000 0.00 0.00 34.73 4.45
3255 3471 4.339530 TGACATATGGAGTACACAGAGCTC 59.660 45.833 5.27 5.27 0.00 4.09
3431 3652 4.460263 AGTACAGCACCATCAAAAACAGA 58.540 39.130 0.00 0.00 0.00 3.41
3483 3704 4.823989 ACTTTAAATTCTCACAGCTGCTGT 59.176 37.500 28.49 28.49 46.51 4.40
3527 3748 6.310224 ACATGACTTTTAACAGCAACAACAAC 59.690 34.615 0.00 0.00 0.00 3.32
3528 3749 6.309980 CACATGACTTTTAACAGCAACAACAA 59.690 34.615 0.00 0.00 0.00 2.83
3529 3750 5.804473 CACATGACTTTTAACAGCAACAACA 59.196 36.000 0.00 0.00 0.00 3.33
3530 3751 5.276348 GCACATGACTTTTAACAGCAACAAC 60.276 40.000 0.00 0.00 0.00 3.32
3531 3752 4.803088 GCACATGACTTTTAACAGCAACAA 59.197 37.500 0.00 0.00 0.00 2.83
3532 3753 4.142293 TGCACATGACTTTTAACAGCAACA 60.142 37.500 0.00 0.00 0.00 3.33
3533 3754 4.358851 TGCACATGACTTTTAACAGCAAC 58.641 39.130 0.00 0.00 0.00 4.17
3534 3755 4.645762 TGCACATGACTTTTAACAGCAA 57.354 36.364 0.00 0.00 0.00 3.91
3535 3756 4.852134 ATGCACATGACTTTTAACAGCA 57.148 36.364 0.00 0.00 0.00 4.41
3536 3757 7.201461 CCAATAATGCACATGACTTTTAACAGC 60.201 37.037 0.00 0.00 0.00 4.40
3537 3758 7.201461 GCCAATAATGCACATGACTTTTAACAG 60.201 37.037 0.00 0.00 0.00 3.16
3549 3770 4.710423 TTGTAACGCCAATAATGCACAT 57.290 36.364 0.00 0.00 0.00 3.21
3550 3771 4.710423 ATTGTAACGCCAATAATGCACA 57.290 36.364 0.00 0.00 33.37 4.57
3565 3786 1.001924 CACGGCACAGCACAATTGTAA 60.002 47.619 11.53 0.00 0.00 2.41
3567 3788 1.359833 CACGGCACAGCACAATTGT 59.640 52.632 4.92 4.92 0.00 2.71
3595 3816 5.744171 AGCCAACAATAAATTCCAATTCCC 58.256 37.500 0.00 0.00 0.00 3.97
3794 4015 3.428589 GGACGGAGGTAGTACATTGTGTC 60.429 52.174 2.06 4.90 0.00 3.67
3796 4017 2.159142 GGGACGGAGGTAGTACATTGTG 60.159 54.545 2.06 0.00 0.00 3.33
3825 4046 9.458727 CCAGCATATTGGATGTAATAAGATCTT 57.541 33.333 13.56 13.56 40.87 2.40
3826 4047 8.829746 TCCAGCATATTGGATGTAATAAGATCT 58.170 33.333 0.00 0.00 42.24 2.75
3873 4102 4.481280 ACTATAACTACTCCCTCTGTCCCA 59.519 45.833 0.00 0.00 0.00 4.37
3906 4135 8.853077 AATGACTCTGAATTGTGAATCTGTTA 57.147 30.769 0.00 0.00 0.00 2.41
3907 4136 7.756395 AATGACTCTGAATTGTGAATCTGTT 57.244 32.000 0.00 0.00 0.00 3.16
3910 4139 7.991084 TCAAATGACTCTGAATTGTGAATCT 57.009 32.000 0.00 0.00 0.00 2.40
3913 4142 9.452287 TCATATCAAATGACTCTGAATTGTGAA 57.548 29.630 0.00 0.00 0.00 3.18
3914 4143 9.452287 TTCATATCAAATGACTCTGAATTGTGA 57.548 29.630 0.00 0.00 0.00 3.58
3917 4146 9.181805 GCATTCATATCAAATGACTCTGAATTG 57.818 33.333 10.27 9.44 36.43 2.32
3920 4149 9.049523 GTAGCATTCATATCAAATGACTCTGAA 57.950 33.333 10.27 6.60 36.43 3.02
3921 4150 8.206189 TGTAGCATTCATATCAAATGACTCTGA 58.794 33.333 10.27 0.00 36.43 3.27
3922 4151 8.374327 TGTAGCATTCATATCAAATGACTCTG 57.626 34.615 10.27 0.00 36.43 3.35
3923 4152 9.000486 CATGTAGCATTCATATCAAATGACTCT 58.000 33.333 10.27 3.01 36.43 3.24
3924 4153 8.996271 TCATGTAGCATTCATATCAAATGACTC 58.004 33.333 10.27 2.49 36.43 3.36
3925 4154 8.913487 TCATGTAGCATTCATATCAAATGACT 57.087 30.769 10.27 9.10 36.43 3.41
3926 4155 9.608617 CTTCATGTAGCATTCATATCAAATGAC 57.391 33.333 10.27 3.32 36.43 3.06
3927 4156 9.563748 TCTTCATGTAGCATTCATATCAAATGA 57.436 29.630 10.27 0.00 36.43 2.57
3930 4159 9.176460 TGTTCTTCATGTAGCATTCATATCAAA 57.824 29.630 0.00 0.00 0.00 2.69
3931 4160 8.735692 TGTTCTTCATGTAGCATTCATATCAA 57.264 30.769 0.00 0.00 0.00 2.57
3932 4161 8.913487 ATGTTCTTCATGTAGCATTCATATCA 57.087 30.769 0.00 0.00 35.19 2.15
3935 4164 8.777413 GCTTATGTTCTTCATGTAGCATTCATA 58.223 33.333 0.00 0.00 41.17 2.15
3936 4165 7.255381 GGCTTATGTTCTTCATGTAGCATTCAT 60.255 37.037 13.97 0.00 42.20 2.57
3937 4166 6.038603 GGCTTATGTTCTTCATGTAGCATTCA 59.961 38.462 13.97 0.00 42.20 2.57
3938 4167 6.038603 TGGCTTATGTTCTTCATGTAGCATTC 59.961 38.462 13.97 3.77 42.20 2.67
3939 4168 5.887598 TGGCTTATGTTCTTCATGTAGCATT 59.112 36.000 13.97 0.00 42.20 3.56
3940 4169 5.439721 TGGCTTATGTTCTTCATGTAGCAT 58.560 37.500 13.97 0.00 42.20 3.79
3941 4170 4.842574 TGGCTTATGTTCTTCATGTAGCA 58.157 39.130 13.97 0.00 42.20 3.49
3942 4171 5.118990 TCTGGCTTATGTTCTTCATGTAGC 58.881 41.667 0.00 0.00 40.98 3.58
3943 4172 6.988580 TCATCTGGCTTATGTTCTTCATGTAG 59.011 38.462 0.00 0.00 37.91 2.74
3944 4173 6.888105 TCATCTGGCTTATGTTCTTCATGTA 58.112 36.000 0.00 0.00 37.91 2.29
3945 4174 5.748402 TCATCTGGCTTATGTTCTTCATGT 58.252 37.500 0.00 0.00 37.91 3.21
3946 4175 6.294010 CCATCATCTGGCTTATGTTCTTCATG 60.294 42.308 0.00 0.00 38.47 3.07
3947 4176 5.768662 CCATCATCTGGCTTATGTTCTTCAT 59.231 40.000 0.00 0.00 38.47 2.57
3948 4177 5.104402 TCCATCATCTGGCTTATGTTCTTCA 60.104 40.000 0.00 0.00 45.52 3.02
3949 4178 5.371526 TCCATCATCTGGCTTATGTTCTTC 58.628 41.667 0.00 0.00 45.52 2.87
3950 4179 5.378230 TCCATCATCTGGCTTATGTTCTT 57.622 39.130 0.00 0.00 45.52 2.52
3951 4180 5.128919 GTTCCATCATCTGGCTTATGTTCT 58.871 41.667 0.00 0.00 45.52 3.01
3952 4181 4.024556 CGTTCCATCATCTGGCTTATGTTC 60.025 45.833 0.00 0.00 45.52 3.18
3953 4182 3.879295 CGTTCCATCATCTGGCTTATGTT 59.121 43.478 0.00 0.00 45.52 2.71
3954 4183 3.470709 CGTTCCATCATCTGGCTTATGT 58.529 45.455 0.00 0.00 45.52 2.29
3955 4184 2.225019 GCGTTCCATCATCTGGCTTATG 59.775 50.000 0.00 0.00 45.52 1.90
3956 4185 2.158769 TGCGTTCCATCATCTGGCTTAT 60.159 45.455 0.00 0.00 45.52 1.73
3957 4186 1.209261 TGCGTTCCATCATCTGGCTTA 59.791 47.619 0.00 0.00 45.52 3.09
3958 4187 0.035152 TGCGTTCCATCATCTGGCTT 60.035 50.000 0.00 0.00 45.52 4.35
3959 4188 0.463295 CTGCGTTCCATCATCTGGCT 60.463 55.000 0.00 0.00 45.52 4.75
3960 4189 0.745845 ACTGCGTTCCATCATCTGGC 60.746 55.000 0.00 0.00 45.52 4.85
3962 4191 1.399440 CCAACTGCGTTCCATCATCTG 59.601 52.381 0.00 0.00 0.00 2.90
3963 4192 1.003580 ACCAACTGCGTTCCATCATCT 59.996 47.619 0.00 0.00 0.00 2.90
3964 4193 1.398390 GACCAACTGCGTTCCATCATC 59.602 52.381 0.00 0.00 0.00 2.92
3965 4194 1.003580 AGACCAACTGCGTTCCATCAT 59.996 47.619 0.00 0.00 0.00 2.45
3966 4195 0.396435 AGACCAACTGCGTTCCATCA 59.604 50.000 0.00 0.00 0.00 3.07
3967 4196 1.079503 GAGACCAACTGCGTTCCATC 58.920 55.000 0.00 0.00 0.00 3.51
3968 4197 0.670546 CGAGACCAACTGCGTTCCAT 60.671 55.000 0.00 0.00 0.00 3.41
3969 4198 1.300620 CGAGACCAACTGCGTTCCA 60.301 57.895 0.00 0.00 0.00 3.53
3970 4199 0.389948 ATCGAGACCAACTGCGTTCC 60.390 55.000 0.00 0.00 0.00 3.62
3971 4200 2.273370 TATCGAGACCAACTGCGTTC 57.727 50.000 0.00 0.00 0.00 3.95
3972 4201 2.961526 ATATCGAGACCAACTGCGTT 57.038 45.000 0.00 0.00 0.00 4.84
3973 4202 2.165641 TGAATATCGAGACCAACTGCGT 59.834 45.455 0.00 0.00 0.00 5.24
3974 4203 2.535984 GTGAATATCGAGACCAACTGCG 59.464 50.000 0.00 0.00 0.00 5.18
3975 4204 3.786635 AGTGAATATCGAGACCAACTGC 58.213 45.455 0.00 0.00 0.00 4.40
3976 4205 5.039984 CAGAGTGAATATCGAGACCAACTG 58.960 45.833 0.00 0.00 0.00 3.16
3977 4206 4.707448 ACAGAGTGAATATCGAGACCAACT 59.293 41.667 0.00 0.00 0.00 3.16
3978 4207 5.000012 ACAGAGTGAATATCGAGACCAAC 58.000 43.478 0.00 0.00 0.00 3.77
3986 4215 4.047822 GAGAGGCAACAGAGTGAATATCG 58.952 47.826 0.00 0.00 41.41 2.92
4011 4240 1.406065 CGGGATGGTCTCCAGCAGAT 61.406 60.000 6.38 0.00 46.98 2.90
4012 4241 2.060383 CGGGATGGTCTCCAGCAGA 61.060 63.158 6.38 0.00 46.98 4.26
4013 4242 2.503061 CGGGATGGTCTCCAGCAG 59.497 66.667 6.38 0.00 46.98 4.24
4016 4245 2.187946 GTGCGGGATGGTCTCCAG 59.812 66.667 0.00 0.00 46.98 3.86
4017 4246 3.399181 GGTGCGGGATGGTCTCCA 61.399 66.667 0.00 0.00 46.98 3.86
4018 4247 3.399181 TGGTGCGGGATGGTCTCC 61.399 66.667 0.00 0.00 44.11 3.71
4019 4248 2.125106 GTGGTGCGGGATGGTCTC 60.125 66.667 0.00 0.00 0.00 3.36
4020 4249 4.082523 CGTGGTGCGGGATGGTCT 62.083 66.667 0.00 0.00 36.85 3.85
4063 4293 5.783111 ACCAAACACATTTTATTCTCCAGC 58.217 37.500 0.00 0.00 0.00 4.85
4147 4379 3.931907 ATAGGTCTGCAAAGCATGGTA 57.068 42.857 0.00 0.00 38.13 3.25
4160 4392 9.726438 GATATACAACCAAATGCTTATAGGTCT 57.274 33.333 0.00 0.00 0.00 3.85
4164 4396 9.224267 AGCTGATATACAACCAAATGCTTATAG 57.776 33.333 0.00 0.00 0.00 1.31
4165 4397 9.002600 CAGCTGATATACAACCAAATGCTTATA 57.997 33.333 8.42 0.00 0.00 0.98
4166 4398 7.720957 TCAGCTGATATACAACCAAATGCTTAT 59.279 33.333 13.74 0.00 0.00 1.73
4167 4399 7.012327 GTCAGCTGATATACAACCAAATGCTTA 59.988 37.037 21.47 0.00 0.00 3.09
4168 4400 5.887598 TCAGCTGATATACAACCAAATGCTT 59.112 36.000 13.74 0.00 0.00 3.91
4169 4401 5.297776 GTCAGCTGATATACAACCAAATGCT 59.702 40.000 21.47 0.00 0.00 3.79
4170 4402 5.514279 GTCAGCTGATATACAACCAAATGC 58.486 41.667 21.47 0.00 0.00 3.56
4171 4403 5.523552 TCGTCAGCTGATATACAACCAAATG 59.476 40.000 21.47 0.00 0.00 2.32
4172 4404 5.670485 TCGTCAGCTGATATACAACCAAAT 58.330 37.500 21.47 0.00 0.00 2.32
4173 4405 5.079689 TCGTCAGCTGATATACAACCAAA 57.920 39.130 21.47 0.00 0.00 3.28
4174 4406 4.729227 TCGTCAGCTGATATACAACCAA 57.271 40.909 21.47 0.00 0.00 3.67
4175 4407 4.729227 TTCGTCAGCTGATATACAACCA 57.271 40.909 21.47 0.00 0.00 3.67
4176 4408 5.289595 TGATTCGTCAGCTGATATACAACC 58.710 41.667 21.47 2.97 0.00 3.77
4177 4409 6.828502 TTGATTCGTCAGCTGATATACAAC 57.171 37.500 21.47 4.42 0.00 3.32
4178 4410 6.816140 TGTTTGATTCGTCAGCTGATATACAA 59.184 34.615 21.47 18.13 0.00 2.41
4179 4411 6.337356 TGTTTGATTCGTCAGCTGATATACA 58.663 36.000 21.47 13.55 0.00 2.29
4180 4412 6.828502 TGTTTGATTCGTCAGCTGATATAC 57.171 37.500 21.47 6.44 0.00 1.47
4181 4413 7.710475 TGATTGTTTGATTCGTCAGCTGATATA 59.290 33.333 21.47 8.36 0.00 0.86
4182 4414 6.539826 TGATTGTTTGATTCGTCAGCTGATAT 59.460 34.615 21.47 13.65 0.00 1.63
4183 4415 5.874261 TGATTGTTTGATTCGTCAGCTGATA 59.126 36.000 21.47 8.75 0.00 2.15
4184 4416 4.696877 TGATTGTTTGATTCGTCAGCTGAT 59.303 37.500 21.47 2.86 0.00 2.90
4185 4417 4.064388 TGATTGTTTGATTCGTCAGCTGA 58.936 39.130 13.74 13.74 0.00 4.26
4186 4418 4.408993 TGATTGTTTGATTCGTCAGCTG 57.591 40.909 7.63 7.63 0.00 4.24
4187 4419 4.516698 AGTTGATTGTTTGATTCGTCAGCT 59.483 37.500 0.00 0.00 0.00 4.24
4188 4420 4.787598 AGTTGATTGTTTGATTCGTCAGC 58.212 39.130 0.00 0.00 0.00 4.26
4189 4421 6.516355 CGTTAGTTGATTGTTTGATTCGTCAG 59.484 38.462 0.00 0.00 0.00 3.51
4190 4422 6.018588 ACGTTAGTTGATTGTTTGATTCGTCA 60.019 34.615 0.00 0.00 0.00 4.35
4191 4423 6.299966 CACGTTAGTTGATTGTTTGATTCGTC 59.700 38.462 0.00 0.00 0.00 4.20
4192 4424 6.018588 TCACGTTAGTTGATTGTTTGATTCGT 60.019 34.615 0.00 0.00 0.00 3.85
4193 4425 6.299966 GTCACGTTAGTTGATTGTTTGATTCG 59.700 38.462 0.00 0.00 0.00 3.34
4194 4426 7.129622 TGTCACGTTAGTTGATTGTTTGATTC 58.870 34.615 0.00 0.00 0.00 2.52
4195 4427 7.022055 TGTCACGTTAGTTGATTGTTTGATT 57.978 32.000 0.00 0.00 0.00 2.57
4196 4428 6.612247 TGTCACGTTAGTTGATTGTTTGAT 57.388 33.333 0.00 0.00 0.00 2.57
4197 4429 6.426327 CATGTCACGTTAGTTGATTGTTTGA 58.574 36.000 0.00 0.00 0.00 2.69
4198 4430 5.624900 CCATGTCACGTTAGTTGATTGTTTG 59.375 40.000 0.00 0.00 0.00 2.93
4199 4431 5.278266 CCCATGTCACGTTAGTTGATTGTTT 60.278 40.000 0.00 0.00 0.00 2.83
4200 4432 4.215399 CCCATGTCACGTTAGTTGATTGTT 59.785 41.667 0.00 0.00 0.00 2.83
4201 4433 3.751175 CCCATGTCACGTTAGTTGATTGT 59.249 43.478 0.00 0.00 0.00 2.71
4202 4434 3.426159 GCCCATGTCACGTTAGTTGATTG 60.426 47.826 0.00 0.00 0.00 2.67
4203 4435 2.747446 GCCCATGTCACGTTAGTTGATT 59.253 45.455 0.00 0.00 0.00 2.57
4204 4436 2.356135 GCCCATGTCACGTTAGTTGAT 58.644 47.619 0.00 0.00 0.00 2.57
4205 4437 1.609580 GGCCCATGTCACGTTAGTTGA 60.610 52.381 0.00 0.00 0.00 3.18
4206 4438 0.802494 GGCCCATGTCACGTTAGTTG 59.198 55.000 0.00 0.00 0.00 3.16
4207 4439 0.690762 AGGCCCATGTCACGTTAGTT 59.309 50.000 0.00 0.00 0.00 2.24
4208 4440 0.690762 AAGGCCCATGTCACGTTAGT 59.309 50.000 0.00 0.00 0.00 2.24
4209 4441 1.086696 CAAGGCCCATGTCACGTTAG 58.913 55.000 0.00 0.00 0.00 2.34
4210 4442 0.687920 TCAAGGCCCATGTCACGTTA 59.312 50.000 0.00 0.00 0.00 3.18
4211 4443 0.179004 TTCAAGGCCCATGTCACGTT 60.179 50.000 0.00 0.00 0.00 3.99
4212 4444 1.454104 TTCAAGGCCCATGTCACGT 59.546 52.632 0.00 0.00 0.00 4.49
4213 4445 4.395519 TTCAAGGCCCATGTCACG 57.604 55.556 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.