Multiple sequence alignment - TraesCS3A01G065000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G065000 chr3A 100.000 2483 0 0 1 2483 38370416 38372898 0.000000e+00 4586.0
1 TraesCS3A01G065000 chr3A 89.453 256 14 3 1 243 102307080 102307335 6.670000e-81 311.0
2 TraesCS3A01G065000 chr3D 91.465 867 51 12 841 1696 28991314 28992168 0.000000e+00 1170.0
3 TraesCS3A01G065000 chr3D 83.283 329 31 12 1813 2117 24097006 24096678 5.230000e-72 281.0
4 TraesCS3A01G065000 chr7B 83.643 862 62 25 1698 2483 84394987 84395845 0.000000e+00 737.0
5 TraesCS3A01G065000 chr7B 86.605 433 35 7 2074 2483 84430691 84431123 8.090000e-125 457.0
6 TraesCS3A01G065000 chr7B 86.437 435 32 8 2074 2483 84435739 84436171 3.770000e-123 451.0
7 TraesCS3A01G065000 chr7B 75.940 532 50 38 756 1226 586742791 586743305 4.190000e-48 202.0
8 TraesCS3A01G065000 chr7B 90.741 108 10 0 1084 1191 621289256 621289363 7.160000e-31 145.0
9 TraesCS3A01G065000 chr6B 83.043 861 68 19 1695 2483 628983618 628984472 0.000000e+00 710.0
10 TraesCS3A01G065000 chr6B 81.682 535 47 10 1695 2180 628980875 628981407 4.980000e-107 398.0
11 TraesCS3A01G065000 chr3B 88.958 480 42 7 756 1229 49426392 49426866 1.280000e-162 582.0
12 TraesCS3A01G065000 chr3B 96.825 315 10 0 1193 1507 49466762 49467076 6.080000e-146 527.0
13 TraesCS3A01G065000 chr3B 96.825 315 10 0 1193 1507 49568624 49568938 6.080000e-146 527.0
14 TraesCS3A01G065000 chr3B 96.508 315 10 1 1193 1507 49629023 49629336 1.020000e-143 520.0
15 TraesCS3A01G065000 chr3B 88.182 440 28 9 1188 1612 49426861 49427291 1.030000e-138 503.0
16 TraesCS3A01G065000 chr3B 96.759 216 6 1 1193 1407 49516556 49516771 2.350000e-95 359.0
17 TraesCS3A01G065000 chr3B 91.364 220 13 3 1481 1696 49427291 49427508 1.870000e-76 296.0
18 TraesCS3A01G065000 chr3B 86.056 251 23 7 1 240 5752985 5753234 2.450000e-65 259.0
19 TraesCS3A01G065000 chr3B 90.196 153 8 4 1545 1696 49467084 49467230 2.520000e-45 193.0
20 TraesCS3A01G065000 chr3B 90.196 153 8 4 1545 1696 49518956 49519102 2.520000e-45 193.0
21 TraesCS3A01G065000 chr3B 96.460 113 4 0 1395 1507 49518836 49518948 1.170000e-43 187.0
22 TraesCS3A01G065000 chr3B 89.542 153 9 4 1545 1696 49568946 49569092 1.170000e-43 187.0
23 TraesCS3A01G065000 chr3B 89.542 153 9 4 1545 1696 49629344 49629490 1.170000e-43 187.0
24 TraesCS3A01G065000 chr3B 93.578 109 4 1 1118 1226 49466609 49466714 2.560000e-35 159.0
25 TraesCS3A01G065000 chr3B 93.578 109 4 1 1118 1226 49516403 49516508 2.560000e-35 159.0
26 TraesCS3A01G065000 chr3B 93.578 109 4 1 1118 1226 49568471 49568576 2.560000e-35 159.0
27 TraesCS3A01G065000 chr3B 93.578 109 4 1 1118 1226 49628870 49628975 2.560000e-35 159.0
28 TraesCS3A01G065000 chr5D 81.378 682 66 29 1844 2483 376436656 376435994 1.330000e-137 499.0
29 TraesCS3A01G065000 chr1B 77.352 861 112 44 1698 2483 551943942 551944794 1.360000e-117 433.0
30 TraesCS3A01G065000 chr1B 86.561 253 22 5 1 242 44836889 44837140 4.070000e-68 268.0
31 TraesCS3A01G065000 chr5A 79.536 689 75 29 1843 2483 477390899 477390229 4.910000e-117 431.0
32 TraesCS3A01G065000 chr2B 79.012 729 78 40 1804 2483 775382379 775383081 1.760000e-116 429.0
33 TraesCS3A01G065000 chr2B 88.889 252 18 3 1 242 653668811 653668560 4.010000e-78 302.0
34 TraesCS3A01G065000 chr2B 88.446 251 18 3 4 244 473582285 473582036 2.420000e-75 292.0
35 TraesCS3A01G065000 chr2B 83.099 71 9 3 1685 1754 12285437 12285505 7.410000e-06 62.1
36 TraesCS3A01G065000 chr7D 78.986 552 58 24 1971 2483 488682788 488683320 8.570000e-85 324.0
37 TraesCS3A01G065000 chr1D 88.583 254 16 3 2 242 326562840 326562587 1.870000e-76 296.0
38 TraesCS3A01G065000 chr1D 83.168 101 14 3 2189 2287 296475935 296475836 3.400000e-14 89.8
39 TraesCS3A01G065000 chr7A 86.641 262 22 5 1 251 408821671 408821412 6.760000e-71 278.0
40 TraesCS3A01G065000 chr7A 86.220 254 23 4 1 243 690723325 690723073 5.270000e-67 265.0
41 TraesCS3A01G065000 chr7A 75.625 480 69 26 767 1204 654004772 654005245 7.010000e-46 195.0
42 TraesCS3A01G065000 chr5B 86.275 255 18 10 1 242 591452367 591452117 6.810000e-66 261.0
43 TraesCS3A01G065000 chr5B 80.727 275 42 7 1694 1957 449394342 449394068 1.160000e-48 204.0
44 TraesCS3A01G065000 chr2A 95.238 42 1 1 1995 2035 13122870 13122911 5.730000e-07 65.8
45 TraesCS3A01G065000 chr1A 97.143 35 1 0 1995 2029 526735372 526735406 2.670000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G065000 chr3A 38370416 38372898 2482 False 4586.000000 4586 100.000000 1 2483 1 chr3A.!!$F1 2482
1 TraesCS3A01G065000 chr3D 28991314 28992168 854 False 1170.000000 1170 91.465000 841 1696 1 chr3D.!!$F1 855
2 TraesCS3A01G065000 chr7B 84394987 84395845 858 False 737.000000 737 83.643000 1698 2483 1 chr7B.!!$F1 785
3 TraesCS3A01G065000 chr7B 586742791 586743305 514 False 202.000000 202 75.940000 756 1226 1 chr7B.!!$F4 470
4 TraesCS3A01G065000 chr6B 628980875 628984472 3597 False 554.000000 710 82.362500 1695 2483 2 chr6B.!!$F1 788
5 TraesCS3A01G065000 chr3B 49426392 49427508 1116 False 460.333333 582 89.501333 756 1696 3 chr3B.!!$F2 940
6 TraesCS3A01G065000 chr3B 49466609 49467230 621 False 293.000000 527 93.533000 1118 1696 3 chr3B.!!$F3 578
7 TraesCS3A01G065000 chr3B 49568471 49569092 621 False 291.000000 527 93.315000 1118 1696 3 chr3B.!!$F5 578
8 TraesCS3A01G065000 chr3B 49628870 49629490 620 False 288.666667 520 93.209333 1118 1696 3 chr3B.!!$F6 578
9 TraesCS3A01G065000 chr3B 49516403 49519102 2699 False 224.500000 359 94.248250 1118 1696 4 chr3B.!!$F4 578
10 TraesCS3A01G065000 chr5D 376435994 376436656 662 True 499.000000 499 81.378000 1844 2483 1 chr5D.!!$R1 639
11 TraesCS3A01G065000 chr1B 551943942 551944794 852 False 433.000000 433 77.352000 1698 2483 1 chr1B.!!$F2 785
12 TraesCS3A01G065000 chr5A 477390229 477390899 670 True 431.000000 431 79.536000 1843 2483 1 chr5A.!!$R1 640
13 TraesCS3A01G065000 chr2B 775382379 775383081 702 False 429.000000 429 79.012000 1804 2483 1 chr2B.!!$F2 679
14 TraesCS3A01G065000 chr7D 488682788 488683320 532 False 324.000000 324 78.986000 1971 2483 1 chr7D.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.041090 TCCCTCCAGCATTTTTCCCC 59.959 55.0 0.0 0.0 0.0 4.81 F
270 271 0.041684 CCCTCCAGCATTTTTCCCCT 59.958 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1561 0.603707 CAGCCTTGAACTTCTCGGCA 60.604 55.0 18.24 0.0 43.07 5.69 R
2240 7518 1.128200 GCTGGAAACCAACCCCTTTT 58.872 50.0 0.00 0.0 30.80 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.134187 CTGCAAGTGTACGCGGCG 62.134 66.667 22.36 22.36 0.00 6.46
21 22 3.751246 AAGTGTACGCGGCGGCTA 61.751 61.111 27.37 8.04 36.88 3.93
22 23 3.976902 AAGTGTACGCGGCGGCTAC 62.977 63.158 27.37 19.90 36.88 3.58
46 47 2.552802 CGTGACTACGGTGGTCTCT 58.447 57.895 22.58 0.00 46.23 3.10
47 48 0.879765 CGTGACTACGGTGGTCTCTT 59.120 55.000 22.58 0.00 46.23 2.85
48 49 1.268899 CGTGACTACGGTGGTCTCTTT 59.731 52.381 22.58 0.00 46.23 2.52
49 50 2.288030 CGTGACTACGGTGGTCTCTTTT 60.288 50.000 22.58 0.00 46.23 2.27
50 51 3.057734 GTGACTACGGTGGTCTCTTTTG 58.942 50.000 22.58 0.00 35.04 2.44
51 52 2.960384 TGACTACGGTGGTCTCTTTTGA 59.040 45.455 22.58 0.90 35.04 2.69
53 54 2.963782 ACTACGGTGGTCTCTTTTGAGT 59.036 45.455 0.00 0.00 46.30 3.41
54 55 2.240493 ACGGTGGTCTCTTTTGAGTG 57.760 50.000 0.00 0.00 46.30 3.51
55 56 0.868406 CGGTGGTCTCTTTTGAGTGC 59.132 55.000 0.00 0.00 46.30 4.40
56 57 1.541233 CGGTGGTCTCTTTTGAGTGCT 60.541 52.381 0.00 0.00 46.30 4.40
57 58 2.576615 GGTGGTCTCTTTTGAGTGCTT 58.423 47.619 0.00 0.00 46.30 3.91
58 59 2.291741 GGTGGTCTCTTTTGAGTGCTTG 59.708 50.000 0.00 0.00 46.30 4.01
59 60 3.206150 GTGGTCTCTTTTGAGTGCTTGA 58.794 45.455 0.00 0.00 46.30 3.02
60 61 3.002759 GTGGTCTCTTTTGAGTGCTTGAC 59.997 47.826 0.00 0.00 46.30 3.18
61 62 2.221981 GGTCTCTTTTGAGTGCTTGACG 59.778 50.000 0.00 0.00 46.30 4.35
62 63 3.123804 GTCTCTTTTGAGTGCTTGACGA 58.876 45.455 0.00 0.00 46.30 4.20
63 64 3.183373 GTCTCTTTTGAGTGCTTGACGAG 59.817 47.826 0.00 0.00 46.30 4.18
64 65 2.096516 CTCTTTTGAGTGCTTGACGAGC 60.097 50.000 7.83 7.83 43.74 5.03
65 66 5.189542 CTCTTTTGAGTGCTTGACGAGCC 62.190 52.174 12.29 3.87 43.25 4.70
86 87 4.197498 GCGCTCCGTACGGGCTAA 62.197 66.667 32.80 13.76 37.36 3.09
87 88 2.025727 CGCTCCGTACGGGCTAAG 59.974 66.667 32.80 23.13 34.94 2.18
88 89 2.279318 GCTCCGTACGGGCTAAGC 60.279 66.667 32.80 28.21 34.94 3.09
100 101 1.663695 GGCTAAGCCTTGTAATGCGA 58.336 50.000 0.00 0.00 46.69 5.10
101 102 2.014128 GGCTAAGCCTTGTAATGCGAA 58.986 47.619 0.00 0.00 46.69 4.70
102 103 2.422127 GGCTAAGCCTTGTAATGCGAAA 59.578 45.455 0.00 0.00 46.69 3.46
103 104 3.487544 GGCTAAGCCTTGTAATGCGAAAG 60.488 47.826 0.00 0.00 46.69 2.62
104 105 3.127030 GCTAAGCCTTGTAATGCGAAAGT 59.873 43.478 0.00 0.00 0.00 2.66
105 106 4.331717 GCTAAGCCTTGTAATGCGAAAGTA 59.668 41.667 0.00 0.00 0.00 2.24
106 107 4.946784 AAGCCTTGTAATGCGAAAGTAG 57.053 40.909 0.00 0.00 0.00 2.57
107 108 2.678336 AGCCTTGTAATGCGAAAGTAGC 59.322 45.455 0.00 0.00 0.00 3.58
108 109 2.678336 GCCTTGTAATGCGAAAGTAGCT 59.322 45.455 0.00 0.00 35.28 3.32
109 110 3.127030 GCCTTGTAATGCGAAAGTAGCTT 59.873 43.478 0.00 0.00 35.28 3.74
110 111 4.728021 GCCTTGTAATGCGAAAGTAGCTTC 60.728 45.833 0.00 0.00 35.28 3.86
111 112 4.631813 CCTTGTAATGCGAAAGTAGCTTCT 59.368 41.667 0.00 0.00 35.28 2.85
112 113 5.122396 CCTTGTAATGCGAAAGTAGCTTCTT 59.878 40.000 0.00 0.00 35.28 2.52
113 114 6.312918 CCTTGTAATGCGAAAGTAGCTTCTTA 59.687 38.462 5.98 0.00 35.28 2.10
114 115 7.148474 CCTTGTAATGCGAAAGTAGCTTCTTAA 60.148 37.037 5.98 0.00 35.28 1.85
115 116 7.290857 TGTAATGCGAAAGTAGCTTCTTAAG 57.709 36.000 5.98 4.92 35.28 1.85
126 127 2.649331 CTTCTTAAGCTCCGTCCGAA 57.351 50.000 0.00 0.00 0.00 4.30
127 128 2.260481 CTTCTTAAGCTCCGTCCGAAC 58.740 52.381 0.00 0.00 0.00 3.95
128 129 1.542492 TCTTAAGCTCCGTCCGAACT 58.458 50.000 0.00 0.00 0.00 3.01
129 130 1.891150 TCTTAAGCTCCGTCCGAACTT 59.109 47.619 0.00 0.00 31.76 2.66
130 131 2.298163 TCTTAAGCTCCGTCCGAACTTT 59.702 45.455 0.00 0.00 29.65 2.66
131 132 2.074547 TAAGCTCCGTCCGAACTTTG 57.925 50.000 0.00 0.00 29.65 2.77
132 133 0.106149 AAGCTCCGTCCGAACTTTGT 59.894 50.000 0.00 0.00 0.00 2.83
133 134 0.319641 AGCTCCGTCCGAACTTTGTC 60.320 55.000 0.00 0.00 0.00 3.18
134 135 1.615107 GCTCCGTCCGAACTTTGTCG 61.615 60.000 0.00 0.00 40.77 4.35
135 136 0.318445 CTCCGTCCGAACTTTGTCGT 60.318 55.000 0.00 0.00 39.43 4.34
136 137 0.595567 TCCGTCCGAACTTTGTCGTG 60.596 55.000 0.00 0.00 39.43 4.35
137 138 1.554042 CCGTCCGAACTTTGTCGTGG 61.554 60.000 0.00 0.00 39.43 4.94
138 139 1.554042 CGTCCGAACTTTGTCGTGGG 61.554 60.000 0.00 0.00 39.43 4.61
139 140 1.595929 TCCGAACTTTGTCGTGGGC 60.596 57.895 0.00 0.00 39.43 5.36
140 141 1.597027 CCGAACTTTGTCGTGGGCT 60.597 57.895 0.00 0.00 39.43 5.19
141 142 1.569493 CGAACTTTGTCGTGGGCTG 59.431 57.895 0.00 0.00 36.26 4.85
142 143 1.841663 CGAACTTTGTCGTGGGCTGG 61.842 60.000 0.00 0.00 36.26 4.85
143 144 0.818040 GAACTTTGTCGTGGGCTGGT 60.818 55.000 0.00 0.00 0.00 4.00
144 145 1.101049 AACTTTGTCGTGGGCTGGTG 61.101 55.000 0.00 0.00 0.00 4.17
145 146 1.525995 CTTTGTCGTGGGCTGGTGT 60.526 57.895 0.00 0.00 0.00 4.16
146 147 1.785041 CTTTGTCGTGGGCTGGTGTG 61.785 60.000 0.00 0.00 0.00 3.82
147 148 3.765894 TTGTCGTGGGCTGGTGTGG 62.766 63.158 0.00 0.00 0.00 4.17
150 151 4.954970 CGTGGGCTGGTGTGGCTT 62.955 66.667 0.00 0.00 0.00 4.35
151 152 2.521708 GTGGGCTGGTGTGGCTTT 60.522 61.111 0.00 0.00 0.00 3.51
152 153 2.133641 GTGGGCTGGTGTGGCTTTT 61.134 57.895 0.00 0.00 0.00 2.27
153 154 2.132996 TGGGCTGGTGTGGCTTTTG 61.133 57.895 0.00 0.00 0.00 2.44
154 155 2.736531 GGCTGGTGTGGCTTTTGG 59.263 61.111 0.00 0.00 0.00 3.28
155 156 2.736531 GCTGGTGTGGCTTTTGGG 59.263 61.111 0.00 0.00 0.00 4.12
156 157 2.133641 GCTGGTGTGGCTTTTGGGT 61.134 57.895 0.00 0.00 0.00 4.51
157 158 1.741525 CTGGTGTGGCTTTTGGGTG 59.258 57.895 0.00 0.00 0.00 4.61
158 159 1.000993 TGGTGTGGCTTTTGGGTGT 59.999 52.632 0.00 0.00 0.00 4.16
159 160 0.616111 TGGTGTGGCTTTTGGGTGTT 60.616 50.000 0.00 0.00 0.00 3.32
160 161 0.179086 GGTGTGGCTTTTGGGTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
161 162 0.534873 GTGTGGCTTTTGGGTGTTGT 59.465 50.000 0.00 0.00 0.00 3.32
162 163 1.751924 GTGTGGCTTTTGGGTGTTGTA 59.248 47.619 0.00 0.00 0.00 2.41
163 164 2.166664 GTGTGGCTTTTGGGTGTTGTAA 59.833 45.455 0.00 0.00 0.00 2.41
164 165 2.428890 TGTGGCTTTTGGGTGTTGTAAG 59.571 45.455 0.00 0.00 0.00 2.34
165 166 2.691011 GTGGCTTTTGGGTGTTGTAAGA 59.309 45.455 0.00 0.00 0.00 2.10
166 167 2.691011 TGGCTTTTGGGTGTTGTAAGAC 59.309 45.455 0.00 0.00 0.00 3.01
167 168 2.956333 GGCTTTTGGGTGTTGTAAGACT 59.044 45.455 0.00 0.00 0.00 3.24
168 169 3.383505 GGCTTTTGGGTGTTGTAAGACTT 59.616 43.478 0.00 0.00 0.00 3.01
169 170 4.581409 GGCTTTTGGGTGTTGTAAGACTTA 59.419 41.667 0.00 0.00 0.00 2.24
170 171 5.243060 GGCTTTTGGGTGTTGTAAGACTTAT 59.757 40.000 0.00 0.00 0.00 1.73
171 172 6.239204 GGCTTTTGGGTGTTGTAAGACTTATT 60.239 38.462 0.00 0.00 0.00 1.40
172 173 6.640907 GCTTTTGGGTGTTGTAAGACTTATTG 59.359 38.462 0.00 0.00 0.00 1.90
173 174 6.642707 TTTGGGTGTTGTAAGACTTATTGG 57.357 37.500 0.00 0.00 0.00 3.16
174 175 5.313280 TGGGTGTTGTAAGACTTATTGGT 57.687 39.130 0.00 0.00 0.00 3.67
175 176 5.067273 TGGGTGTTGTAAGACTTATTGGTG 58.933 41.667 0.00 0.00 0.00 4.17
176 177 5.067954 GGGTGTTGTAAGACTTATTGGTGT 58.932 41.667 0.00 0.00 0.00 4.16
177 178 5.533528 GGGTGTTGTAAGACTTATTGGTGTT 59.466 40.000 0.00 0.00 0.00 3.32
178 179 6.711645 GGGTGTTGTAAGACTTATTGGTGTTA 59.288 38.462 0.00 0.00 0.00 2.41
179 180 7.308169 GGGTGTTGTAAGACTTATTGGTGTTAC 60.308 40.741 0.00 7.42 42.49 2.50
180 181 7.443272 GGTGTTGTAAGACTTATTGGTGTTACT 59.557 37.037 13.10 0.00 42.56 2.24
181 182 8.493547 GTGTTGTAAGACTTATTGGTGTTACTC 58.506 37.037 13.10 8.60 42.56 2.59
182 183 8.426489 TGTTGTAAGACTTATTGGTGTTACTCT 58.574 33.333 13.10 0.00 42.56 3.24
183 184 8.709646 GTTGTAAGACTTATTGGTGTTACTCTG 58.290 37.037 13.10 0.00 42.56 3.35
184 185 6.872020 TGTAAGACTTATTGGTGTTACTCTGC 59.128 38.462 13.10 0.00 42.56 4.26
185 186 4.833390 AGACTTATTGGTGTTACTCTGCC 58.167 43.478 0.00 0.00 0.00 4.85
186 187 3.596214 ACTTATTGGTGTTACTCTGCCG 58.404 45.455 0.00 0.00 0.00 5.69
187 188 3.007614 ACTTATTGGTGTTACTCTGCCGT 59.992 43.478 0.00 0.00 0.00 5.68
188 189 2.561478 ATTGGTGTTACTCTGCCGTT 57.439 45.000 0.00 0.00 0.00 4.44
189 190 1.588674 TTGGTGTTACTCTGCCGTTG 58.411 50.000 0.00 0.00 0.00 4.10
190 191 0.250124 TGGTGTTACTCTGCCGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
191 192 0.953960 GGTGTTACTCTGCCGTTGGG 60.954 60.000 0.00 0.00 0.00 4.12
192 193 0.953960 GTGTTACTCTGCCGTTGGGG 60.954 60.000 0.00 0.00 39.58 4.96
208 209 7.764695 CCGTTGGGGCTTTATTAATTTAAAG 57.235 36.000 6.41 6.41 40.56 1.85
216 217 6.727569 CTTTATTAATTTAAAGCCGGACGC 57.272 37.500 5.05 0.00 33.69 5.19
217 218 5.814764 TTATTAATTTAAAGCCGGACGCA 57.185 34.783 5.05 0.00 41.38 5.24
218 219 4.911514 ATTAATTTAAAGCCGGACGCAT 57.088 36.364 5.05 0.00 41.38 4.73
219 220 2.844122 AATTTAAAGCCGGACGCATC 57.156 45.000 5.05 0.00 41.38 3.91
220 221 2.038387 ATTTAAAGCCGGACGCATCT 57.962 45.000 5.05 0.00 41.38 2.90
221 222 1.083489 TTTAAAGCCGGACGCATCTG 58.917 50.000 5.05 0.00 41.38 2.90
232 233 3.876300 GCATCTGGCGTCTTCGTT 58.124 55.556 0.00 0.00 39.49 3.85
233 234 1.710339 GCATCTGGCGTCTTCGTTC 59.290 57.895 0.00 0.00 39.49 3.95
234 235 0.737715 GCATCTGGCGTCTTCGTTCT 60.738 55.000 0.00 0.00 39.49 3.01
235 236 1.469251 GCATCTGGCGTCTTCGTTCTA 60.469 52.381 0.00 0.00 39.49 2.10
236 237 2.876091 CATCTGGCGTCTTCGTTCTAA 58.124 47.619 0.00 0.00 39.49 2.10
237 238 3.250744 CATCTGGCGTCTTCGTTCTAAA 58.749 45.455 0.00 0.00 39.49 1.85
238 239 3.374220 TCTGGCGTCTTCGTTCTAAAA 57.626 42.857 0.00 0.00 39.49 1.52
239 240 3.719924 TCTGGCGTCTTCGTTCTAAAAA 58.280 40.909 0.00 0.00 39.49 1.94
259 260 2.736670 AATACAACCATCCCTCCAGC 57.263 50.000 0.00 0.00 0.00 4.85
260 261 1.595311 ATACAACCATCCCTCCAGCA 58.405 50.000 0.00 0.00 0.00 4.41
261 262 1.595311 TACAACCATCCCTCCAGCAT 58.405 50.000 0.00 0.00 0.00 3.79
262 263 0.706433 ACAACCATCCCTCCAGCATT 59.294 50.000 0.00 0.00 0.00 3.56
263 264 1.077663 ACAACCATCCCTCCAGCATTT 59.922 47.619 0.00 0.00 0.00 2.32
264 265 2.181975 CAACCATCCCTCCAGCATTTT 58.818 47.619 0.00 0.00 0.00 1.82
265 266 2.568509 CAACCATCCCTCCAGCATTTTT 59.431 45.455 0.00 0.00 0.00 1.94
266 267 2.460669 ACCATCCCTCCAGCATTTTTC 58.539 47.619 0.00 0.00 0.00 2.29
267 268 1.758862 CCATCCCTCCAGCATTTTTCC 59.241 52.381 0.00 0.00 0.00 3.13
268 269 1.758862 CATCCCTCCAGCATTTTTCCC 59.241 52.381 0.00 0.00 0.00 3.97
269 270 0.041090 TCCCTCCAGCATTTTTCCCC 59.959 55.000 0.00 0.00 0.00 4.81
270 271 0.041684 CCCTCCAGCATTTTTCCCCT 59.958 55.000 0.00 0.00 0.00 4.79
271 272 1.188863 CCTCCAGCATTTTTCCCCTG 58.811 55.000 0.00 0.00 0.00 4.45
272 273 1.272648 CCTCCAGCATTTTTCCCCTGA 60.273 52.381 0.00 0.00 0.00 3.86
273 274 2.625087 CCTCCAGCATTTTTCCCCTGAT 60.625 50.000 0.00 0.00 0.00 2.90
274 275 3.373001 CCTCCAGCATTTTTCCCCTGATA 60.373 47.826 0.00 0.00 0.00 2.15
275 276 4.477249 CTCCAGCATTTTTCCCCTGATAT 58.523 43.478 0.00 0.00 0.00 1.63
276 277 4.882559 TCCAGCATTTTTCCCCTGATATT 58.117 39.130 0.00 0.00 0.00 1.28
277 278 5.279685 TCCAGCATTTTTCCCCTGATATTT 58.720 37.500 0.00 0.00 0.00 1.40
278 279 5.363580 TCCAGCATTTTTCCCCTGATATTTC 59.636 40.000 0.00 0.00 0.00 2.17
279 280 5.364735 CCAGCATTTTTCCCCTGATATTTCT 59.635 40.000 0.00 0.00 0.00 2.52
280 281 6.126968 CCAGCATTTTTCCCCTGATATTTCTT 60.127 38.462 0.00 0.00 0.00 2.52
281 282 7.333323 CAGCATTTTTCCCCTGATATTTCTTT 58.667 34.615 0.00 0.00 0.00 2.52
282 283 7.279313 CAGCATTTTTCCCCTGATATTTCTTTG 59.721 37.037 0.00 0.00 0.00 2.77
283 284 6.037500 GCATTTTTCCCCTGATATTTCTTTGC 59.962 38.462 0.00 0.00 0.00 3.68
284 285 6.933514 TTTTTCCCCTGATATTTCTTTGCT 57.066 33.333 0.00 0.00 0.00 3.91
285 286 5.920193 TTTCCCCTGATATTTCTTTGCTG 57.080 39.130 0.00 0.00 0.00 4.41
286 287 4.860802 TCCCCTGATATTTCTTTGCTGA 57.139 40.909 0.00 0.00 0.00 4.26
287 288 5.393068 TCCCCTGATATTTCTTTGCTGAT 57.607 39.130 0.00 0.00 0.00 2.90
288 289 5.769835 TCCCCTGATATTTCTTTGCTGATT 58.230 37.500 0.00 0.00 0.00 2.57
289 290 6.197168 TCCCCTGATATTTCTTTGCTGATTT 58.803 36.000 0.00 0.00 0.00 2.17
290 291 6.669154 TCCCCTGATATTTCTTTGCTGATTTT 59.331 34.615 0.00 0.00 0.00 1.82
291 292 7.838696 TCCCCTGATATTTCTTTGCTGATTTTA 59.161 33.333 0.00 0.00 0.00 1.52
292 293 8.477256 CCCCTGATATTTCTTTGCTGATTTTAA 58.523 33.333 0.00 0.00 0.00 1.52
293 294 9.874205 CCCTGATATTTCTTTGCTGATTTTAAA 57.126 29.630 0.00 0.00 0.00 1.52
301 302 8.947055 TTCTTTGCTGATTTTAAAAGCTTTCT 57.053 26.923 13.10 5.69 37.82 2.52
302 303 8.579682 TCTTTGCTGATTTTAAAAGCTTTCTC 57.420 30.769 13.10 5.59 37.82 2.87
303 304 8.196771 TCTTTGCTGATTTTAAAAGCTTTCTCA 58.803 29.630 13.10 9.55 37.82 3.27
304 305 8.891671 TTTGCTGATTTTAAAAGCTTTCTCAT 57.108 26.923 13.10 2.60 37.82 2.90
305 306 7.878477 TGCTGATTTTAAAAGCTTTCTCATG 57.122 32.000 13.10 6.50 37.82 3.07
306 307 7.660112 TGCTGATTTTAAAAGCTTTCTCATGA 58.340 30.769 13.10 0.00 37.82 3.07
307 308 8.308931 TGCTGATTTTAAAAGCTTTCTCATGAT 58.691 29.630 13.10 2.59 37.82 2.45
308 309 8.805688 GCTGATTTTAAAAGCTTTCTCATGATC 58.194 33.333 13.10 11.50 34.05 2.92
392 393 8.961294 AATTTGTGAACATTTTTCTGGATTCA 57.039 26.923 0.00 0.00 0.00 2.57
393 394 7.769272 TTTGTGAACATTTTTCTGGATTCAC 57.231 32.000 7.75 7.75 43.90 3.18
396 397 7.769272 GTGAACATTTTTCTGGATTCACAAA 57.231 32.000 9.43 0.00 43.38 2.83
397 398 8.369218 GTGAACATTTTTCTGGATTCACAAAT 57.631 30.769 9.43 0.00 43.38 2.32
398 399 9.474920 GTGAACATTTTTCTGGATTCACAAATA 57.525 29.630 9.43 0.00 43.38 1.40
433 434 9.927668 AAAATCATGAACCTTTTGAATATTCGT 57.072 25.926 10.80 0.00 0.00 3.85
434 435 8.915871 AATCATGAACCTTTTGAATATTCGTG 57.084 30.769 10.80 0.00 37.55 4.35
435 436 7.447374 TCATGAACCTTTTGAATATTCGTGT 57.553 32.000 10.80 1.02 37.49 4.49
436 437 7.304735 TCATGAACCTTTTGAATATTCGTGTG 58.695 34.615 10.80 1.96 37.49 3.82
437 438 6.627395 TGAACCTTTTGAATATTCGTGTGT 57.373 33.333 10.80 2.00 0.00 3.72
438 439 6.664515 TGAACCTTTTGAATATTCGTGTGTC 58.335 36.000 10.80 3.44 0.00 3.67
439 440 6.485313 TGAACCTTTTGAATATTCGTGTGTCT 59.515 34.615 10.80 0.00 0.00 3.41
440 441 6.877611 ACCTTTTGAATATTCGTGTGTCTT 57.122 33.333 10.80 0.00 0.00 3.01
441 442 7.272037 ACCTTTTGAATATTCGTGTGTCTTT 57.728 32.000 10.80 0.00 0.00 2.52
442 443 8.385898 ACCTTTTGAATATTCGTGTGTCTTTA 57.614 30.769 10.80 0.00 0.00 1.85
443 444 8.842280 ACCTTTTGAATATTCGTGTGTCTTTAA 58.158 29.630 10.80 0.00 0.00 1.52
444 445 9.840427 CCTTTTGAATATTCGTGTGTCTTTAAT 57.160 29.630 10.80 0.00 0.00 1.40
447 448 9.536558 TTTGAATATTCGTGTGTCTTTAATTCG 57.463 29.630 10.80 0.00 0.00 3.34
448 449 8.246908 TGAATATTCGTGTGTCTTTAATTCGT 57.753 30.769 10.80 0.00 0.00 3.85
449 450 8.166066 TGAATATTCGTGTGTCTTTAATTCGTG 58.834 33.333 10.80 0.00 0.00 4.35
450 451 7.821595 ATATTCGTGTGTCTTTAATTCGTGA 57.178 32.000 0.00 0.00 0.00 4.35
451 452 5.970140 TTCGTGTGTCTTTAATTCGTGAA 57.030 34.783 0.00 0.00 0.00 3.18
452 453 6.533819 TTCGTGTGTCTTTAATTCGTGAAT 57.466 33.333 0.00 0.00 0.00 2.57
453 454 7.640616 TTCGTGTGTCTTTAATTCGTGAATA 57.359 32.000 0.00 0.00 0.00 1.75
454 455 7.640616 TCGTGTGTCTTTAATTCGTGAATAA 57.359 32.000 0.00 0.00 0.00 1.40
455 456 8.246908 TCGTGTGTCTTTAATTCGTGAATAAT 57.753 30.769 0.00 0.00 0.00 1.28
456 457 8.714179 TCGTGTGTCTTTAATTCGTGAATAATT 58.286 29.630 0.00 0.00 0.00 1.40
457 458 9.325150 CGTGTGTCTTTAATTCGTGAATAATTT 57.675 29.630 0.00 0.00 0.00 1.82
628 629 5.964887 AAATCATGTGTTTTTGTTCGTGG 57.035 34.783 0.00 0.00 0.00 4.94
629 630 4.909696 ATCATGTGTTTTTGTTCGTGGA 57.090 36.364 0.00 0.00 0.00 4.02
630 631 4.909696 TCATGTGTTTTTGTTCGTGGAT 57.090 36.364 0.00 0.00 0.00 3.41
631 632 6.567687 ATCATGTGTTTTTGTTCGTGGATA 57.432 33.333 0.00 0.00 0.00 2.59
632 633 6.567687 TCATGTGTTTTTGTTCGTGGATAT 57.432 33.333 0.00 0.00 0.00 1.63
633 634 6.976088 TCATGTGTTTTTGTTCGTGGATATT 58.024 32.000 0.00 0.00 0.00 1.28
634 635 7.429633 TCATGTGTTTTTGTTCGTGGATATTT 58.570 30.769 0.00 0.00 0.00 1.40
635 636 7.380870 TCATGTGTTTTTGTTCGTGGATATTTG 59.619 33.333 0.00 0.00 0.00 2.32
636 637 5.980116 TGTGTTTTTGTTCGTGGATATTTGG 59.020 36.000 0.00 0.00 0.00 3.28
637 638 5.404066 GTGTTTTTGTTCGTGGATATTTGGG 59.596 40.000 0.00 0.00 0.00 4.12
638 639 5.302059 TGTTTTTGTTCGTGGATATTTGGGA 59.698 36.000 0.00 0.00 0.00 4.37
639 640 6.183360 TGTTTTTGTTCGTGGATATTTGGGAA 60.183 34.615 0.00 0.00 0.00 3.97
640 641 5.379732 TTTGTTCGTGGATATTTGGGAAC 57.620 39.130 0.00 0.00 35.54 3.62
641 642 4.022413 TGTTCGTGGATATTTGGGAACA 57.978 40.909 8.41 8.41 40.78 3.18
642 643 4.594970 TGTTCGTGGATATTTGGGAACAT 58.405 39.130 8.41 0.00 42.32 2.71
643 644 5.013547 TGTTCGTGGATATTTGGGAACATT 58.986 37.500 8.41 0.00 42.32 2.71
644 645 6.181190 TGTTCGTGGATATTTGGGAACATTA 58.819 36.000 8.41 0.00 42.32 1.90
645 646 6.831353 TGTTCGTGGATATTTGGGAACATTAT 59.169 34.615 8.41 0.00 42.32 1.28
646 647 7.340743 TGTTCGTGGATATTTGGGAACATTATT 59.659 33.333 8.41 0.00 42.32 1.40
647 648 7.889873 TCGTGGATATTTGGGAACATTATTT 57.110 32.000 0.00 0.00 42.32 1.40
648 649 8.299990 TCGTGGATATTTGGGAACATTATTTT 57.700 30.769 0.00 0.00 42.32 1.82
649 650 8.194104 TCGTGGATATTTGGGAACATTATTTTG 58.806 33.333 0.00 0.00 42.32 2.44
650 651 8.194104 CGTGGATATTTGGGAACATTATTTTGA 58.806 33.333 0.00 0.00 42.32 2.69
651 652 9.883142 GTGGATATTTGGGAACATTATTTTGAA 57.117 29.630 0.00 0.00 42.32 2.69
657 658 7.881643 TTGGGAACATTATTTTGAATTGACG 57.118 32.000 0.00 0.00 42.32 4.35
658 659 7.220741 TGGGAACATTATTTTGAATTGACGA 57.779 32.000 0.00 0.00 33.40 4.20
659 660 7.661968 TGGGAACATTATTTTGAATTGACGAA 58.338 30.769 0.00 0.00 33.40 3.85
660 661 7.596995 TGGGAACATTATTTTGAATTGACGAAC 59.403 33.333 0.00 0.00 33.40 3.95
661 662 7.596995 GGGAACATTATTTTGAATTGACGAACA 59.403 33.333 0.00 0.00 0.00 3.18
662 663 9.139174 GGAACATTATTTTGAATTGACGAACAT 57.861 29.630 0.00 0.00 0.00 2.71
755 756 9.716556 TGGAGGAGATATTTTCTTTCTAGTAGT 57.283 33.333 0.00 0.00 33.74 2.73
793 794 1.682344 GAAAGATGTGGTGGGGCCC 60.682 63.158 18.17 18.17 36.04 5.80
821 822 1.304713 CAGCCCAGCCCAATGAACT 60.305 57.895 0.00 0.00 0.00 3.01
822 823 1.000396 AGCCCAGCCCAATGAACTC 60.000 57.895 0.00 0.00 0.00 3.01
838 849 3.384789 TGAACTCGTATGATGGAAGAGGG 59.615 47.826 0.00 0.00 33.58 4.30
844 855 1.414061 ATGATGGAAGAGGGCCGAGG 61.414 60.000 0.00 0.00 0.00 4.63
866 877 3.816054 CCCGAGGTTGGTTAGGGT 58.184 61.111 0.00 0.00 37.36 4.34
867 878 1.600638 CCCGAGGTTGGTTAGGGTC 59.399 63.158 0.00 0.00 37.36 4.46
886 897 3.496160 GGTCGTTGGCCTGGACATATATT 60.496 47.826 1.32 0.00 32.39 1.28
961 987 2.843701 CGAGAGAAATCCCCAATCCAG 58.156 52.381 0.00 0.00 0.00 3.86
998 1038 1.527380 GAGAGGAGAGATCCGGCGT 60.527 63.158 6.01 0.00 34.28 5.68
1120 1190 1.989966 ATCGTCGATCGTCAAGGCGT 61.990 55.000 15.94 1.16 40.80 5.68
1371 1561 0.249398 GGTCTGAGTACAACGCCCAT 59.751 55.000 0.00 0.00 0.00 4.00
1424 3692 0.408700 AAGTGGAGGGACTACTCGGT 59.591 55.000 0.00 0.00 42.22 4.69
1507 3780 4.545208 TGTAATTTGACGACTGGGATGA 57.455 40.909 0.00 0.00 0.00 2.92
1508 3781 4.900684 TGTAATTTGACGACTGGGATGAA 58.099 39.130 0.00 0.00 0.00 2.57
1509 3782 4.935205 TGTAATTTGACGACTGGGATGAAG 59.065 41.667 0.00 0.00 0.00 3.02
1510 3783 2.472695 TTTGACGACTGGGATGAAGG 57.527 50.000 0.00 0.00 0.00 3.46
1512 3785 1.866015 TGACGACTGGGATGAAGGAT 58.134 50.000 0.00 0.00 0.00 3.24
1513 3786 1.482182 TGACGACTGGGATGAAGGATG 59.518 52.381 0.00 0.00 0.00 3.51
1514 3787 1.482593 GACGACTGGGATGAAGGATGT 59.517 52.381 0.00 0.00 0.00 3.06
1516 3789 2.305927 ACGACTGGGATGAAGGATGTTT 59.694 45.455 0.00 0.00 0.00 2.83
1517 3790 3.244911 ACGACTGGGATGAAGGATGTTTT 60.245 43.478 0.00 0.00 0.00 2.43
1518 3791 3.127548 CGACTGGGATGAAGGATGTTTTG 59.872 47.826 0.00 0.00 0.00 2.44
1519 3792 3.434309 ACTGGGATGAAGGATGTTTTGG 58.566 45.455 0.00 0.00 0.00 3.28
1521 3794 4.264532 ACTGGGATGAAGGATGTTTTGGAT 60.265 41.667 0.00 0.00 0.00 3.41
1523 3796 5.448654 TGGGATGAAGGATGTTTTGGATAG 58.551 41.667 0.00 0.00 0.00 2.08
1524 3797 5.193527 TGGGATGAAGGATGTTTTGGATAGA 59.806 40.000 0.00 0.00 0.00 1.98
1525 3798 6.126097 TGGGATGAAGGATGTTTTGGATAGAT 60.126 38.462 0.00 0.00 0.00 1.98
1526 3799 6.208204 GGGATGAAGGATGTTTTGGATAGATG 59.792 42.308 0.00 0.00 0.00 2.90
1529 3802 9.342308 GATGAAGGATGTTTTGGATAGATGTTA 57.658 33.333 0.00 0.00 0.00 2.41
1530 3803 8.737168 TGAAGGATGTTTTGGATAGATGTTAG 57.263 34.615 0.00 0.00 0.00 2.34
1532 3805 8.511604 AAGGATGTTTTGGATAGATGTTAGTG 57.488 34.615 0.00 0.00 0.00 2.74
1533 3806 7.633789 AGGATGTTTTGGATAGATGTTAGTGT 58.366 34.615 0.00 0.00 0.00 3.55
1534 3807 7.770897 AGGATGTTTTGGATAGATGTTAGTGTC 59.229 37.037 0.00 0.00 0.00 3.67
1536 3809 8.862325 ATGTTTTGGATAGATGTTAGTGTCAA 57.138 30.769 0.00 0.00 0.00 3.18
1538 3811 9.126151 TGTTTTGGATAGATGTTAGTGTCAAAA 57.874 29.630 0.00 0.00 31.80 2.44
1540 3813 7.681939 TTGGATAGATGTTAGTGTCAAAACC 57.318 36.000 0.00 0.00 0.00 3.27
1541 3814 5.872617 TGGATAGATGTTAGTGTCAAAACCG 59.127 40.000 0.00 0.00 0.00 4.44
1542 3815 5.873164 GGATAGATGTTAGTGTCAAAACCGT 59.127 40.000 0.00 0.00 0.00 4.83
1543 3816 6.370718 GGATAGATGTTAGTGTCAAAACCGTT 59.629 38.462 0.00 0.00 0.00 4.44
1559 3974 9.607988 TCAAAACCGTTTCATGTAGTGATATAT 57.392 29.630 0.00 0.00 36.54 0.86
1671 4089 7.094205 ACAAAATATTCAAGTTCTTCAGCCGAT 60.094 33.333 0.00 0.00 0.00 4.18
1696 4115 7.408910 TGCGTTCATCATGTGTTTGAATATAG 58.591 34.615 0.00 0.00 32.48 1.31
1709 4128 8.154856 GTGTTTGAATATAGGGGCAGTAATCTA 58.845 37.037 0.00 0.00 0.00 1.98
1734 4153 1.834378 TGCACCGGCCCAAATTTGA 60.834 52.632 19.86 0.00 40.13 2.69
1737 6899 1.228862 ACCGGCCCAAATTTGAGCT 60.229 52.632 21.96 2.10 32.00 4.09
1764 6926 2.677003 CGCAGCCGTTCGATTTGGT 61.677 57.895 0.00 0.00 0.00 3.67
1808 6970 2.770048 CCCGATCTGGCCCTCCTT 60.770 66.667 0.00 0.00 35.87 3.36
1838 7023 1.075226 CTCTTCCTCCCGATCCCCA 60.075 63.158 0.00 0.00 0.00 4.96
1840 7025 1.383248 CTTCCTCCCGATCCCCACT 60.383 63.158 0.00 0.00 0.00 4.00
1841 7026 0.105658 CTTCCTCCCGATCCCCACTA 60.106 60.000 0.00 0.00 0.00 2.74
1842 7027 0.105658 TTCCTCCCGATCCCCACTAG 60.106 60.000 0.00 0.00 0.00 2.57
1874 7064 2.672908 CCTCCATGTGCAGCTCCA 59.327 61.111 0.00 0.00 0.00 3.86
1949 7141 0.674895 CTTGCTGGAGAACCTTCCCG 60.675 60.000 0.00 0.00 36.35 5.14
1951 7143 3.068881 CTGGAGAACCTTCCCGCA 58.931 61.111 0.00 0.00 36.35 5.69
2050 7262 1.788308 CCAACAACGATTGCAGCAAAG 59.212 47.619 12.97 11.91 0.00 2.77
2053 7266 3.435105 ACAACGATTGCAGCAAAGAAA 57.565 38.095 12.97 0.00 0.00 2.52
2056 7280 3.921119 ACGATTGCAGCAAAGAAATCA 57.079 38.095 12.97 0.00 0.00 2.57
2062 7287 0.109132 CAGCAAAGAAATCACGGGGC 60.109 55.000 0.00 0.00 0.00 5.80
2133 7359 1.813513 AATCTGAGAACGGTTGCAGG 58.186 50.000 15.95 3.50 0.00 4.85
2229 7506 3.756933 AAACACAAAGCCGGTAGTAGA 57.243 42.857 1.90 0.00 0.00 2.59
2290 7568 3.016736 CACCGGATACAGCAAAATTCCT 58.983 45.455 9.46 0.00 0.00 3.36
2292 7570 4.638421 CACCGGATACAGCAAAATTCCTTA 59.362 41.667 9.46 0.00 0.00 2.69
2363 7645 2.241941 TCCAGCAAGAAATCCATGGCTA 59.758 45.455 6.96 0.00 0.00 3.93
2433 7716 0.178938 TCCAGCTTTTTCCATGGCCA 60.179 50.000 8.56 8.56 32.63 5.36
2437 7720 2.235402 CAGCTTTTTCCATGGCCAGATT 59.765 45.455 13.05 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.134187 CGCCGCGTACACTTGCAG 62.134 66.667 4.92 0.00 0.00 4.41
3 4 3.975083 TAGCCGCCGCGTACACTTG 62.975 63.158 12.58 0.00 41.18 3.16
5 6 4.487412 GTAGCCGCCGCGTACACT 62.487 66.667 12.58 6.10 41.18 3.55
29 30 3.057734 CAAAAGAGACCACCGTAGTCAC 58.942 50.000 0.00 0.00 36.68 3.67
30 31 2.960384 TCAAAAGAGACCACCGTAGTCA 59.040 45.455 0.00 0.00 36.68 3.41
31 32 3.005578 ACTCAAAAGAGACCACCGTAGTC 59.994 47.826 0.00 0.00 34.31 2.59
32 33 2.963782 ACTCAAAAGAGACCACCGTAGT 59.036 45.455 0.00 0.00 0.00 2.73
33 34 3.318017 CACTCAAAAGAGACCACCGTAG 58.682 50.000 0.00 0.00 0.00 3.51
34 35 2.547218 GCACTCAAAAGAGACCACCGTA 60.547 50.000 0.00 0.00 0.00 4.02
35 36 1.810412 GCACTCAAAAGAGACCACCGT 60.810 52.381 0.00 0.00 0.00 4.83
36 37 0.868406 GCACTCAAAAGAGACCACCG 59.132 55.000 0.00 0.00 0.00 4.94
37 38 2.262423 AGCACTCAAAAGAGACCACC 57.738 50.000 0.00 0.00 0.00 4.61
38 39 3.002759 GTCAAGCACTCAAAAGAGACCAC 59.997 47.826 0.00 0.00 0.00 4.16
39 40 3.206150 GTCAAGCACTCAAAAGAGACCA 58.794 45.455 0.00 0.00 0.00 4.02
40 41 2.221981 CGTCAAGCACTCAAAAGAGACC 59.778 50.000 0.00 0.00 0.00 3.85
41 42 3.123804 TCGTCAAGCACTCAAAAGAGAC 58.876 45.455 0.00 0.00 0.00 3.36
42 43 3.384668 CTCGTCAAGCACTCAAAAGAGA 58.615 45.455 0.00 0.00 0.00 3.10
43 44 3.784883 CTCGTCAAGCACTCAAAAGAG 57.215 47.619 0.00 0.00 0.00 2.85
69 70 4.197498 TTAGCCCGTACGGAGCGC 62.197 66.667 35.41 27.92 36.84 5.92
70 71 2.025727 CTTAGCCCGTACGGAGCG 59.974 66.667 35.41 19.62 36.84 5.03
71 72 2.279318 GCTTAGCCCGTACGGAGC 60.279 66.667 35.41 31.81 37.50 4.70
72 73 2.416260 GGCTTAGCCCGTACGGAG 59.584 66.667 35.41 24.12 44.06 4.63
82 83 3.127030 ACTTTCGCATTACAAGGCTTAGC 59.873 43.478 0.00 0.00 32.73 3.09
83 84 4.946784 ACTTTCGCATTACAAGGCTTAG 57.053 40.909 0.00 0.00 32.73 2.18
84 85 4.331717 GCTACTTTCGCATTACAAGGCTTA 59.668 41.667 0.00 0.00 32.73 3.09
85 86 3.127030 GCTACTTTCGCATTACAAGGCTT 59.873 43.478 0.00 0.00 32.73 4.35
86 87 2.678336 GCTACTTTCGCATTACAAGGCT 59.322 45.455 0.00 0.00 32.73 4.58
87 88 2.678336 AGCTACTTTCGCATTACAAGGC 59.322 45.455 0.00 0.00 0.00 4.35
88 89 4.631813 AGAAGCTACTTTCGCATTACAAGG 59.368 41.667 0.00 0.00 32.33 3.61
89 90 5.786401 AGAAGCTACTTTCGCATTACAAG 57.214 39.130 0.00 0.00 32.33 3.16
90 91 7.661127 TTAAGAAGCTACTTTCGCATTACAA 57.339 32.000 0.00 0.00 32.33 2.41
91 92 7.290857 CTTAAGAAGCTACTTTCGCATTACA 57.709 36.000 0.00 0.00 32.33 2.41
107 108 2.094649 AGTTCGGACGGAGCTTAAGAAG 60.095 50.000 6.67 0.00 31.37 2.85
108 109 1.891150 AGTTCGGACGGAGCTTAAGAA 59.109 47.619 6.67 0.00 31.37 2.52
109 110 1.542492 AGTTCGGACGGAGCTTAAGA 58.458 50.000 6.67 0.00 31.37 2.10
110 111 2.365408 AAGTTCGGACGGAGCTTAAG 57.635 50.000 9.84 0.00 43.42 1.85
111 112 2.224113 ACAAAGTTCGGACGGAGCTTAA 60.224 45.455 11.57 0.00 44.32 1.85
112 113 1.342174 ACAAAGTTCGGACGGAGCTTA 59.658 47.619 11.57 0.00 44.32 3.09
113 114 0.106149 ACAAAGTTCGGACGGAGCTT 59.894 50.000 6.33 6.33 46.67 3.74
114 115 0.319641 GACAAAGTTCGGACGGAGCT 60.320 55.000 0.00 0.00 37.90 4.09
115 116 1.615107 CGACAAAGTTCGGACGGAGC 61.615 60.000 0.00 0.00 35.26 4.70
116 117 0.318445 ACGACAAAGTTCGGACGGAG 60.318 55.000 0.00 0.00 43.58 4.63
117 118 0.595567 CACGACAAAGTTCGGACGGA 60.596 55.000 0.00 0.00 43.58 4.69
118 119 1.554042 CCACGACAAAGTTCGGACGG 61.554 60.000 0.00 0.00 43.58 4.79
119 120 1.554042 CCCACGACAAAGTTCGGACG 61.554 60.000 0.00 0.00 43.58 4.79
120 121 1.838568 GCCCACGACAAAGTTCGGAC 61.839 60.000 0.00 0.00 43.58 4.79
121 122 1.595929 GCCCACGACAAAGTTCGGA 60.596 57.895 0.00 0.00 43.58 4.55
122 123 1.597027 AGCCCACGACAAAGTTCGG 60.597 57.895 0.00 0.00 43.58 4.30
123 124 1.569493 CAGCCCACGACAAAGTTCG 59.431 57.895 0.00 0.00 44.87 3.95
124 125 0.818040 ACCAGCCCACGACAAAGTTC 60.818 55.000 0.00 0.00 0.00 3.01
125 126 1.101049 CACCAGCCCACGACAAAGTT 61.101 55.000 0.00 0.00 0.00 2.66
126 127 1.525995 CACCAGCCCACGACAAAGT 60.526 57.895 0.00 0.00 0.00 2.66
127 128 1.525995 ACACCAGCCCACGACAAAG 60.526 57.895 0.00 0.00 0.00 2.77
128 129 1.821759 CACACCAGCCCACGACAAA 60.822 57.895 0.00 0.00 0.00 2.83
129 130 2.203139 CACACCAGCCCACGACAA 60.203 61.111 0.00 0.00 0.00 3.18
130 131 4.248842 CCACACCAGCCCACGACA 62.249 66.667 0.00 0.00 0.00 4.35
133 134 4.954970 AAGCCACACCAGCCCACG 62.955 66.667 0.00 0.00 0.00 4.94
134 135 2.133641 AAAAGCCACACCAGCCCAC 61.134 57.895 0.00 0.00 0.00 4.61
135 136 2.132996 CAAAAGCCACACCAGCCCA 61.133 57.895 0.00 0.00 0.00 5.36
136 137 2.736531 CAAAAGCCACACCAGCCC 59.263 61.111 0.00 0.00 0.00 5.19
137 138 2.736531 CCAAAAGCCACACCAGCC 59.263 61.111 0.00 0.00 0.00 4.85
138 139 2.133641 ACCCAAAAGCCACACCAGC 61.134 57.895 0.00 0.00 0.00 4.85
139 140 1.042559 ACACCCAAAAGCCACACCAG 61.043 55.000 0.00 0.00 0.00 4.00
140 141 0.616111 AACACCCAAAAGCCACACCA 60.616 50.000 0.00 0.00 0.00 4.17
141 142 0.179086 CAACACCCAAAAGCCACACC 60.179 55.000 0.00 0.00 0.00 4.16
142 143 0.534873 ACAACACCCAAAAGCCACAC 59.465 50.000 0.00 0.00 0.00 3.82
143 144 2.145397 TACAACACCCAAAAGCCACA 57.855 45.000 0.00 0.00 0.00 4.17
144 145 2.691011 TCTTACAACACCCAAAAGCCAC 59.309 45.455 0.00 0.00 0.00 5.01
145 146 2.691011 GTCTTACAACACCCAAAAGCCA 59.309 45.455 0.00 0.00 0.00 4.75
146 147 2.956333 AGTCTTACAACACCCAAAAGCC 59.044 45.455 0.00 0.00 0.00 4.35
147 148 4.649088 AAGTCTTACAACACCCAAAAGC 57.351 40.909 0.00 0.00 0.00 3.51
148 149 7.145323 CCAATAAGTCTTACAACACCCAAAAG 58.855 38.462 0.00 0.00 0.00 2.27
149 150 6.608002 ACCAATAAGTCTTACAACACCCAAAA 59.392 34.615 0.00 0.00 0.00 2.44
150 151 6.039941 CACCAATAAGTCTTACAACACCCAAA 59.960 38.462 0.00 0.00 0.00 3.28
151 152 5.533154 CACCAATAAGTCTTACAACACCCAA 59.467 40.000 0.00 0.00 0.00 4.12
152 153 5.067273 CACCAATAAGTCTTACAACACCCA 58.933 41.667 0.00 0.00 0.00 4.51
153 154 5.067954 ACACCAATAAGTCTTACAACACCC 58.932 41.667 0.00 0.00 0.00 4.61
154 155 6.628919 AACACCAATAAGTCTTACAACACC 57.371 37.500 0.00 0.00 0.00 4.16
155 156 8.374327 AGTAACACCAATAAGTCTTACAACAC 57.626 34.615 0.00 0.00 0.00 3.32
156 157 8.426489 AGAGTAACACCAATAAGTCTTACAACA 58.574 33.333 0.00 0.00 0.00 3.33
157 158 8.709646 CAGAGTAACACCAATAAGTCTTACAAC 58.290 37.037 0.00 0.00 0.00 3.32
158 159 7.386848 GCAGAGTAACACCAATAAGTCTTACAA 59.613 37.037 0.00 0.00 0.00 2.41
159 160 6.872020 GCAGAGTAACACCAATAAGTCTTACA 59.128 38.462 0.00 0.00 0.00 2.41
160 161 6.313164 GGCAGAGTAACACCAATAAGTCTTAC 59.687 42.308 0.00 0.00 0.00 2.34
161 162 6.403878 GGCAGAGTAACACCAATAAGTCTTA 58.596 40.000 0.00 0.00 0.00 2.10
162 163 5.246307 GGCAGAGTAACACCAATAAGTCTT 58.754 41.667 0.00 0.00 0.00 3.01
163 164 4.620803 CGGCAGAGTAACACCAATAAGTCT 60.621 45.833 0.00 0.00 0.00 3.24
164 165 3.617263 CGGCAGAGTAACACCAATAAGTC 59.383 47.826 0.00 0.00 0.00 3.01
165 166 3.007614 ACGGCAGAGTAACACCAATAAGT 59.992 43.478 0.00 0.00 0.00 2.24
166 167 3.596214 ACGGCAGAGTAACACCAATAAG 58.404 45.455 0.00 0.00 0.00 1.73
167 168 3.688694 ACGGCAGAGTAACACCAATAA 57.311 42.857 0.00 0.00 0.00 1.40
168 169 3.331150 CAACGGCAGAGTAACACCAATA 58.669 45.455 0.00 0.00 0.00 1.90
169 170 2.151202 CAACGGCAGAGTAACACCAAT 58.849 47.619 0.00 0.00 0.00 3.16
170 171 1.588674 CAACGGCAGAGTAACACCAA 58.411 50.000 0.00 0.00 0.00 3.67
171 172 0.250124 CCAACGGCAGAGTAACACCA 60.250 55.000 0.00 0.00 0.00 4.17
172 173 0.953960 CCCAACGGCAGAGTAACACC 60.954 60.000 0.00 0.00 0.00 4.16
173 174 0.953960 CCCCAACGGCAGAGTAACAC 60.954 60.000 0.00 0.00 0.00 3.32
174 175 1.373435 CCCCAACGGCAGAGTAACA 59.627 57.895 0.00 0.00 0.00 2.41
175 176 4.296265 CCCCAACGGCAGAGTAAC 57.704 61.111 0.00 0.00 0.00 2.50
184 185 7.764695 CTTTAAATTAATAAAGCCCCAACGG 57.235 36.000 0.00 0.00 36.42 4.44
193 194 6.259638 TGCGTCCGGCTTTAAATTAATAAAG 58.740 36.000 0.00 6.41 42.93 1.85
194 195 6.192234 TGCGTCCGGCTTTAAATTAATAAA 57.808 33.333 0.00 0.00 44.05 1.40
195 196 5.814764 TGCGTCCGGCTTTAAATTAATAA 57.185 34.783 0.00 0.00 44.05 1.40
196 197 5.761234 AGATGCGTCCGGCTTTAAATTAATA 59.239 36.000 1.23 0.00 44.05 0.98
197 198 4.578928 AGATGCGTCCGGCTTTAAATTAAT 59.421 37.500 1.23 0.00 44.05 1.40
198 199 3.942748 AGATGCGTCCGGCTTTAAATTAA 59.057 39.130 1.23 0.00 44.05 1.40
199 200 3.311322 CAGATGCGTCCGGCTTTAAATTA 59.689 43.478 1.23 0.00 44.05 1.40
200 201 2.097466 CAGATGCGTCCGGCTTTAAATT 59.903 45.455 1.23 0.00 44.05 1.82
201 202 1.670811 CAGATGCGTCCGGCTTTAAAT 59.329 47.619 1.23 0.00 44.05 1.40
202 203 1.083489 CAGATGCGTCCGGCTTTAAA 58.917 50.000 1.23 0.00 44.05 1.52
203 204 0.742990 CCAGATGCGTCCGGCTTTAA 60.743 55.000 1.23 0.00 44.05 1.52
204 205 1.153449 CCAGATGCGTCCGGCTTTA 60.153 57.895 1.23 0.00 44.05 1.85
205 206 2.436646 CCAGATGCGTCCGGCTTT 60.437 61.111 1.23 0.00 44.05 3.51
215 216 0.737715 AGAACGAAGACGCCAGATGC 60.738 55.000 0.00 0.00 43.96 3.91
216 217 2.561733 TAGAACGAAGACGCCAGATG 57.438 50.000 0.00 0.00 43.96 2.90
217 218 3.587797 TTTAGAACGAAGACGCCAGAT 57.412 42.857 0.00 0.00 43.96 2.90
218 219 3.374220 TTTTAGAACGAAGACGCCAGA 57.626 42.857 0.00 0.00 43.96 3.86
237 238 3.769300 GCTGGAGGGATGGTTGTATTTTT 59.231 43.478 0.00 0.00 0.00 1.94
238 239 3.245586 TGCTGGAGGGATGGTTGTATTTT 60.246 43.478 0.00 0.00 0.00 1.82
239 240 2.311542 TGCTGGAGGGATGGTTGTATTT 59.688 45.455 0.00 0.00 0.00 1.40
240 241 1.922447 TGCTGGAGGGATGGTTGTATT 59.078 47.619 0.00 0.00 0.00 1.89
241 242 1.595311 TGCTGGAGGGATGGTTGTAT 58.405 50.000 0.00 0.00 0.00 2.29
242 243 1.595311 ATGCTGGAGGGATGGTTGTA 58.405 50.000 0.00 0.00 0.00 2.41
243 244 0.706433 AATGCTGGAGGGATGGTTGT 59.294 50.000 0.00 0.00 0.00 3.32
244 245 1.856629 AAATGCTGGAGGGATGGTTG 58.143 50.000 0.00 0.00 0.00 3.77
245 246 2.629017 AAAATGCTGGAGGGATGGTT 57.371 45.000 0.00 0.00 0.00 3.67
246 247 2.460669 GAAAAATGCTGGAGGGATGGT 58.539 47.619 0.00 0.00 0.00 3.55
247 248 1.758862 GGAAAAATGCTGGAGGGATGG 59.241 52.381 0.00 0.00 0.00 3.51
248 249 1.758862 GGGAAAAATGCTGGAGGGATG 59.241 52.381 0.00 0.00 0.00 3.51
249 250 1.343377 GGGGAAAAATGCTGGAGGGAT 60.343 52.381 0.00 0.00 0.00 3.85
250 251 0.041090 GGGGAAAAATGCTGGAGGGA 59.959 55.000 0.00 0.00 0.00 4.20
251 252 0.041684 AGGGGAAAAATGCTGGAGGG 59.958 55.000 0.00 0.00 0.00 4.30
252 253 1.188863 CAGGGGAAAAATGCTGGAGG 58.811 55.000 0.00 0.00 0.00 4.30
253 254 2.220653 TCAGGGGAAAAATGCTGGAG 57.779 50.000 0.00 0.00 0.00 3.86
254 255 2.925966 ATCAGGGGAAAAATGCTGGA 57.074 45.000 0.00 0.00 0.00 3.86
255 256 5.364735 AGAAATATCAGGGGAAAAATGCTGG 59.635 40.000 0.00 0.00 0.00 4.85
256 257 6.475596 AGAAATATCAGGGGAAAAATGCTG 57.524 37.500 0.00 0.00 0.00 4.41
257 258 7.333323 CAAAGAAATATCAGGGGAAAAATGCT 58.667 34.615 0.00 0.00 0.00 3.79
258 259 6.037500 GCAAAGAAATATCAGGGGAAAAATGC 59.962 38.462 0.00 0.00 0.00 3.56
259 260 7.279313 CAGCAAAGAAATATCAGGGGAAAAATG 59.721 37.037 0.00 0.00 0.00 2.32
260 261 7.180766 TCAGCAAAGAAATATCAGGGGAAAAAT 59.819 33.333 0.00 0.00 0.00 1.82
261 262 6.496565 TCAGCAAAGAAATATCAGGGGAAAAA 59.503 34.615 0.00 0.00 0.00 1.94
262 263 6.015918 TCAGCAAAGAAATATCAGGGGAAAA 58.984 36.000 0.00 0.00 0.00 2.29
263 264 5.579047 TCAGCAAAGAAATATCAGGGGAAA 58.421 37.500 0.00 0.00 0.00 3.13
264 265 5.191727 TCAGCAAAGAAATATCAGGGGAA 57.808 39.130 0.00 0.00 0.00 3.97
265 266 4.860802 TCAGCAAAGAAATATCAGGGGA 57.139 40.909 0.00 0.00 0.00 4.81
266 267 6.475596 AAATCAGCAAAGAAATATCAGGGG 57.524 37.500 0.00 0.00 0.00 4.79
267 268 9.874205 TTTAAAATCAGCAAAGAAATATCAGGG 57.126 29.630 0.00 0.00 0.00 4.45
275 276 9.382275 AGAAAGCTTTTAAAATCAGCAAAGAAA 57.618 25.926 14.05 0.00 35.88 2.52
276 277 8.947055 AGAAAGCTTTTAAAATCAGCAAAGAA 57.053 26.923 14.05 0.00 35.88 2.52
277 278 8.196771 TGAGAAAGCTTTTAAAATCAGCAAAGA 58.803 29.630 14.05 0.00 35.88 2.52
278 279 8.356533 TGAGAAAGCTTTTAAAATCAGCAAAG 57.643 30.769 14.05 0.00 35.88 2.77
279 280 8.767085 CATGAGAAAGCTTTTAAAATCAGCAAA 58.233 29.630 14.05 0.00 35.88 3.68
280 281 8.143193 TCATGAGAAAGCTTTTAAAATCAGCAA 58.857 29.630 14.05 1.55 35.88 3.91
281 282 7.660112 TCATGAGAAAGCTTTTAAAATCAGCA 58.340 30.769 14.05 2.78 35.88 4.41
282 283 8.699283 ATCATGAGAAAGCTTTTAAAATCAGC 57.301 30.769 14.05 1.57 0.00 4.26
366 367 9.393512 TGAATCCAGAAAAATGTTCACAAATTT 57.606 25.926 0.00 0.00 0.00 1.82
367 368 8.829612 GTGAATCCAGAAAAATGTTCACAAATT 58.170 29.630 10.22 0.00 42.84 1.82
368 369 8.369218 GTGAATCCAGAAAAATGTTCACAAAT 57.631 30.769 10.22 0.00 42.84 2.32
369 370 7.769272 GTGAATCCAGAAAAATGTTCACAAA 57.231 32.000 10.22 0.00 42.84 2.83
372 373 7.769272 TTTGTGAATCCAGAAAAATGTTCAC 57.231 32.000 8.61 8.61 43.32 3.18
407 408 9.927668 ACGAATATTCAAAAGGTTCATGATTTT 57.072 25.926 15.57 0.00 0.00 1.82
408 409 9.357652 CACGAATATTCAAAAGGTTCATGATTT 57.642 29.630 15.57 0.00 0.00 2.17
409 410 8.522830 ACACGAATATTCAAAAGGTTCATGATT 58.477 29.630 15.57 0.00 0.00 2.57
410 411 7.970061 CACACGAATATTCAAAAGGTTCATGAT 59.030 33.333 15.57 0.00 0.00 2.45
411 412 7.040755 ACACACGAATATTCAAAAGGTTCATGA 60.041 33.333 15.57 0.00 0.00 3.07
412 413 7.083858 ACACACGAATATTCAAAAGGTTCATG 58.916 34.615 15.57 5.72 0.00 3.07
413 414 7.174946 AGACACACGAATATTCAAAAGGTTCAT 59.825 33.333 15.57 0.00 0.00 2.57
414 415 6.485313 AGACACACGAATATTCAAAAGGTTCA 59.515 34.615 15.57 0.00 0.00 3.18
415 416 6.899114 AGACACACGAATATTCAAAAGGTTC 58.101 36.000 15.57 3.06 0.00 3.62
416 417 6.877611 AGACACACGAATATTCAAAAGGTT 57.122 33.333 15.57 0.00 0.00 3.50
417 418 6.877611 AAGACACACGAATATTCAAAAGGT 57.122 33.333 15.57 6.41 0.00 3.50
418 419 9.840427 ATTAAAGACACACGAATATTCAAAAGG 57.160 29.630 15.57 1.41 0.00 3.11
421 422 9.536558 CGAATTAAAGACACACGAATATTCAAA 57.463 29.630 15.57 0.00 0.00 2.69
422 423 8.714179 ACGAATTAAAGACACACGAATATTCAA 58.286 29.630 15.57 0.00 0.00 2.69
423 424 8.166066 CACGAATTAAAGACACACGAATATTCA 58.834 33.333 15.57 0.00 0.00 2.57
424 425 8.377681 TCACGAATTAAAGACACACGAATATTC 58.622 33.333 5.30 5.30 0.00 1.75
425 426 8.246908 TCACGAATTAAAGACACACGAATATT 57.753 30.769 0.00 0.00 0.00 1.28
426 427 7.821595 TCACGAATTAAAGACACACGAATAT 57.178 32.000 0.00 0.00 0.00 1.28
427 428 7.640616 TTCACGAATTAAAGACACACGAATA 57.359 32.000 0.00 0.00 0.00 1.75
428 429 6.533819 TTCACGAATTAAAGACACACGAAT 57.466 33.333 0.00 0.00 0.00 3.34
429 430 5.970140 TTCACGAATTAAAGACACACGAA 57.030 34.783 0.00 0.00 0.00 3.85
430 431 7.640616 TTATTCACGAATTAAAGACACACGA 57.359 32.000 0.00 0.00 32.50 4.35
431 432 8.874745 AATTATTCACGAATTAAAGACACACG 57.125 30.769 0.00 0.00 32.50 4.49
604 605 6.591834 TCCACGAACAAAAACACATGATTTTT 59.408 30.769 15.08 15.08 39.30 1.94
605 606 6.102663 TCCACGAACAAAAACACATGATTTT 58.897 32.000 0.00 3.09 31.50 1.82
606 607 5.655488 TCCACGAACAAAAACACATGATTT 58.345 33.333 0.00 0.00 0.00 2.17
607 608 5.255710 TCCACGAACAAAAACACATGATT 57.744 34.783 0.00 0.00 0.00 2.57
608 609 4.909696 TCCACGAACAAAAACACATGAT 57.090 36.364 0.00 0.00 0.00 2.45
609 610 4.909696 ATCCACGAACAAAAACACATGA 57.090 36.364 0.00 0.00 0.00 3.07
610 611 7.359097 CCAAATATCCACGAACAAAAACACATG 60.359 37.037 0.00 0.00 0.00 3.21
611 612 6.644592 CCAAATATCCACGAACAAAAACACAT 59.355 34.615 0.00 0.00 0.00 3.21
612 613 5.980116 CCAAATATCCACGAACAAAAACACA 59.020 36.000 0.00 0.00 0.00 3.72
613 614 5.404066 CCCAAATATCCACGAACAAAAACAC 59.596 40.000 0.00 0.00 0.00 3.32
614 615 5.302059 TCCCAAATATCCACGAACAAAAACA 59.698 36.000 0.00 0.00 0.00 2.83
615 616 5.774630 TCCCAAATATCCACGAACAAAAAC 58.225 37.500 0.00 0.00 0.00 2.43
616 617 6.183360 TGTTCCCAAATATCCACGAACAAAAA 60.183 34.615 0.00 0.00 37.31 1.94
617 618 5.302059 TGTTCCCAAATATCCACGAACAAAA 59.698 36.000 0.00 0.00 37.31 2.44
618 619 4.827835 TGTTCCCAAATATCCACGAACAAA 59.172 37.500 0.00 0.00 37.31 2.83
619 620 4.399219 TGTTCCCAAATATCCACGAACAA 58.601 39.130 0.00 0.00 37.31 2.83
620 621 4.022413 TGTTCCCAAATATCCACGAACA 57.978 40.909 0.00 0.00 37.76 3.18
621 622 5.576447 AATGTTCCCAAATATCCACGAAC 57.424 39.130 0.00 0.00 0.00 3.95
622 623 7.889873 AATAATGTTCCCAAATATCCACGAA 57.110 32.000 0.00 0.00 0.00 3.85
623 624 7.889873 AAATAATGTTCCCAAATATCCACGA 57.110 32.000 0.00 0.00 0.00 4.35
624 625 8.194104 TCAAAATAATGTTCCCAAATATCCACG 58.806 33.333 0.00 0.00 0.00 4.94
625 626 9.883142 TTCAAAATAATGTTCCCAAATATCCAC 57.117 29.630 0.00 0.00 0.00 4.02
631 632 8.934825 CGTCAATTCAAAATAATGTTCCCAAAT 58.065 29.630 0.00 0.00 0.00 2.32
632 633 8.144478 TCGTCAATTCAAAATAATGTTCCCAAA 58.856 29.630 0.00 0.00 0.00 3.28
633 634 7.661968 TCGTCAATTCAAAATAATGTTCCCAA 58.338 30.769 0.00 0.00 0.00 4.12
634 635 7.220741 TCGTCAATTCAAAATAATGTTCCCA 57.779 32.000 0.00 0.00 0.00 4.37
635 636 7.596995 TGTTCGTCAATTCAAAATAATGTTCCC 59.403 33.333 0.00 0.00 0.00 3.97
636 637 8.514136 TGTTCGTCAATTCAAAATAATGTTCC 57.486 30.769 0.00 0.00 0.00 3.62
729 730 9.716556 ACTACTAGAAAGAAAATATCTCCTCCA 57.283 33.333 0.00 0.00 37.42 3.86
756 757 9.936759 CATCTTTCTTTCTTTCTTCCTACTACT 57.063 33.333 0.00 0.00 0.00 2.57
757 758 9.713713 ACATCTTTCTTTCTTTCTTCCTACTAC 57.286 33.333 0.00 0.00 0.00 2.73
758 759 9.712305 CACATCTTTCTTTCTTTCTTCCTACTA 57.288 33.333 0.00 0.00 0.00 1.82
759 760 7.663493 CCACATCTTTCTTTCTTTCTTCCTACT 59.337 37.037 0.00 0.00 0.00 2.57
760 761 7.445707 ACCACATCTTTCTTTCTTTCTTCCTAC 59.554 37.037 0.00 0.00 0.00 3.18
761 762 7.445402 CACCACATCTTTCTTTCTTTCTTCCTA 59.555 37.037 0.00 0.00 0.00 2.94
764 765 6.442112 CCACCACATCTTTCTTTCTTTCTTC 58.558 40.000 0.00 0.00 0.00 2.87
793 794 3.379445 CTGGGCTGGCCTTTGCTG 61.379 66.667 21.72 1.28 37.74 4.41
801 802 4.764771 TCATTGGGCTGGGCTGGC 62.765 66.667 0.00 0.00 0.00 4.85
803 804 1.304713 AGTTCATTGGGCTGGGCTG 60.305 57.895 0.00 0.00 0.00 4.85
821 822 1.048601 GGCCCTCTTCCATCATACGA 58.951 55.000 0.00 0.00 0.00 3.43
822 823 0.319900 CGGCCCTCTTCCATCATACG 60.320 60.000 0.00 0.00 0.00 3.06
844 855 2.847435 CTAACCAACCTCGGGTCGGC 62.847 65.000 0.41 0.00 31.86 5.54
865 876 2.902705 TATATGTCCAGGCCAACGAC 57.097 50.000 5.01 7.78 0.00 4.34
866 877 5.755409 ATAATATATGTCCAGGCCAACGA 57.245 39.130 5.01 0.00 0.00 3.85
867 878 5.518847 CGTATAATATATGTCCAGGCCAACG 59.481 44.000 5.01 0.00 0.00 4.10
961 987 0.035725 CCTGGTCGGTTAGGGTTTCC 60.036 60.000 0.00 0.00 0.00 3.13
1101 1171 1.298413 CGCCTTGACGATCGACGAT 60.298 57.895 24.34 10.78 45.77 3.73
1120 1190 4.020617 CCTCTTGGAGCCGCACCA 62.021 66.667 5.30 5.30 34.57 4.17
1371 1561 0.603707 CAGCCTTGAACTTCTCGGCA 60.604 55.000 18.24 0.00 43.07 5.69
1507 3780 8.109634 ACACTAACATCTATCCAAAACATCCTT 58.890 33.333 0.00 0.00 0.00 3.36
1508 3781 7.633789 ACACTAACATCTATCCAAAACATCCT 58.366 34.615 0.00 0.00 0.00 3.24
1509 3782 7.552687 TGACACTAACATCTATCCAAAACATCC 59.447 37.037 0.00 0.00 0.00 3.51
1510 3783 8.492673 TGACACTAACATCTATCCAAAACATC 57.507 34.615 0.00 0.00 0.00 3.06
1512 3785 8.684386 TTTGACACTAACATCTATCCAAAACA 57.316 30.769 0.00 0.00 0.00 2.83
1513 3786 9.394477 GTTTTGACACTAACATCTATCCAAAAC 57.606 33.333 0.00 0.00 41.48 2.43
1514 3787 8.573035 GGTTTTGACACTAACATCTATCCAAAA 58.427 33.333 0.00 0.00 0.00 2.44
1516 3789 6.370442 CGGTTTTGACACTAACATCTATCCAA 59.630 38.462 2.96 0.00 0.00 3.53
1517 3790 5.872617 CGGTTTTGACACTAACATCTATCCA 59.127 40.000 2.96 0.00 0.00 3.41
1518 3791 5.873164 ACGGTTTTGACACTAACATCTATCC 59.127 40.000 0.00 0.00 0.00 2.59
1519 3792 6.963049 ACGGTTTTGACACTAACATCTATC 57.037 37.500 0.00 0.00 0.00 2.08
1521 3794 6.762187 TGAAACGGTTTTGACACTAACATCTA 59.238 34.615 7.65 0.00 0.00 1.98
1523 3796 5.812652 TGAAACGGTTTTGACACTAACATC 58.187 37.500 7.65 0.00 0.00 3.06
1524 3797 5.821516 TGAAACGGTTTTGACACTAACAT 57.178 34.783 7.65 0.00 0.00 2.71
1525 3798 5.124138 ACATGAAACGGTTTTGACACTAACA 59.876 36.000 7.65 0.00 0.00 2.41
1526 3799 5.575019 ACATGAAACGGTTTTGACACTAAC 58.425 37.500 7.65 0.00 0.00 2.34
1529 3802 4.879545 ACTACATGAAACGGTTTTGACACT 59.120 37.500 7.65 0.00 0.00 3.55
1530 3803 4.967575 CACTACATGAAACGGTTTTGACAC 59.032 41.667 7.65 0.00 0.00 3.67
1532 3805 5.412526 TCACTACATGAAACGGTTTTGAC 57.587 39.130 7.65 0.00 33.02 3.18
1533 3806 7.915293 ATATCACTACATGAAACGGTTTTGA 57.085 32.000 7.65 6.02 41.93 2.69
1671 4089 3.978718 TTCAAACACATGATGAACGCA 57.021 38.095 0.00 0.00 0.00 5.24
1696 4115 1.300697 CGGCGTAGATTACTGCCCC 60.301 63.158 0.00 0.00 41.79 5.80
1764 6926 1.454201 TTTTGAACGACTGTGGTGCA 58.546 45.000 0.00 0.00 0.00 4.57
1774 6936 2.299582 TCGGGGTAGACATTTTGAACGA 59.700 45.455 0.00 0.00 0.00 3.85
1808 6970 1.887198 GAGGAAGAGGACGAGTCAACA 59.113 52.381 5.55 0.00 0.00 3.33
1838 7023 2.341101 CGGAGTCACGTGGGCTAGT 61.341 63.158 17.00 0.00 0.00 2.57
1840 7025 3.755628 GCGGAGTCACGTGGGCTA 61.756 66.667 17.00 0.00 35.98 3.93
1874 7064 2.928396 AGTAGCCGGTGCCCTTGT 60.928 61.111 1.90 0.00 38.69 3.16
1900 7092 4.233558 GGCAAGGGGTTGGGGTGT 62.234 66.667 0.00 0.00 0.00 4.16
1951 7143 1.374758 GCGTGGAGCTGCAACTAGT 60.375 57.895 10.44 0.00 44.04 2.57
2017 7227 4.890088 TCGTTGTTGGATTTGCTACTACT 58.110 39.130 0.00 0.00 0.00 2.57
2050 7262 1.648467 GCTGTGAGCCCCGTGATTTC 61.648 60.000 0.00 0.00 34.48 2.17
2053 7266 3.005539 AGCTGTGAGCCCCGTGAT 61.006 61.111 0.00 0.00 43.77 3.06
2149 7378 4.681978 GAGTTGCGACCCCGTGCT 62.682 66.667 0.00 0.00 38.24 4.40
2180 7410 5.105675 GGAACCAACACCTTTTTAGTGACAA 60.106 40.000 0.00 0.00 38.63 3.18
2238 7516 2.677914 CTGGAAACCAACCCCTTTTCT 58.322 47.619 0.00 0.00 30.80 2.52
2240 7518 1.128200 GCTGGAAACCAACCCCTTTT 58.872 50.000 0.00 0.00 30.80 2.27
2290 7568 1.277579 TGGTATGCAGGAACCGGTAA 58.722 50.000 8.00 0.00 38.70 2.85
2292 7570 0.107214 CATGGTATGCAGGAACCGGT 60.107 55.000 0.00 0.00 38.70 5.28
2385 7667 2.279120 GAGATGCTGCGACGGAGG 60.279 66.667 18.44 0.06 0.00 4.30
2398 7680 1.183030 TGGAACCACGGTCACGAGAT 61.183 55.000 0.00 0.00 44.60 2.75
2433 7716 6.423776 ACCATGGTGAAAATTGTTGAATCT 57.576 33.333 18.99 0.00 0.00 2.40
2437 7720 4.125703 GCAACCATGGTGAAAATTGTTGA 58.874 39.130 20.60 0.00 34.30 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.