Multiple sequence alignment - TraesCS3A01G064200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G064200 chr3A 100.000 3797 0 0 1 3797 38237557 38241353 0.000000e+00 7012.0
1 TraesCS3A01G064200 chr3A 81.500 1173 178 24 1134 2280 38208225 38209384 0.000000e+00 928.0
2 TraesCS3A01G064200 chr3A 78.571 154 26 6 3331 3483 11530583 11530730 1.120000e-15 95.3
3 TraesCS3A01G064200 chr3D 95.139 2407 92 10 1410 3797 28485516 28487916 0.000000e+00 3773.0
4 TraesCS3A01G064200 chr3D 92.298 1649 104 12 1014 2644 27890399 27888756 0.000000e+00 2320.0
5 TraesCS3A01G064200 chr3D 93.866 1239 60 5 1 1239 28483946 28485168 0.000000e+00 1853.0
6 TraesCS3A01G064200 chr3D 89.858 917 47 16 2637 3513 27886136 27885226 0.000000e+00 1136.0
7 TraesCS3A01G064200 chr3D 79.281 1419 237 34 891 2280 28242622 28244012 0.000000e+00 939.0
8 TraesCS3A01G064200 chr3D 88.696 230 14 8 562 782 27891263 27891037 1.740000e-68 270.0
9 TraesCS3A01G064200 chr3D 74.316 475 99 19 1808 2269 28217220 28216756 3.010000e-41 180.0
10 TraesCS3A01G064200 chr3D 85.859 99 12 2 776 872 27890554 27890456 1.870000e-18 104.0
11 TraesCS3A01G064200 chr3D 94.737 57 3 0 2836 2892 4853111 4853167 5.220000e-14 89.8
12 TraesCS3A01G064200 chr3B 79.344 1433 249 25 873 2280 47262052 47263462 0.000000e+00 963.0
13 TraesCS3A01G064200 chr3B 74.699 498 97 23 1808 2289 47210378 47209894 1.080000e-45 195.0
14 TraesCS3A01G064200 chrUn 94.737 57 3 0 2836 2892 35484499 35484555 5.220000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G064200 chr3A 38237557 38241353 3796 False 7012.0 7012 100.00000 1 3797 1 chr3A.!!$F3 3796
1 TraesCS3A01G064200 chr3A 38208225 38209384 1159 False 928.0 928 81.50000 1134 2280 1 chr3A.!!$F2 1146
2 TraesCS3A01G064200 chr3D 28483946 28487916 3970 False 2813.0 3773 94.50250 1 3797 2 chr3D.!!$F3 3796
3 TraesCS3A01G064200 chr3D 27885226 27891263 6037 True 957.5 2320 89.17775 562 3513 4 chr3D.!!$R2 2951
4 TraesCS3A01G064200 chr3D 28242622 28244012 1390 False 939.0 939 79.28100 891 2280 1 chr3D.!!$F2 1389
5 TraesCS3A01G064200 chr3B 47262052 47263462 1410 False 963.0 963 79.34400 873 2280 1 chr3B.!!$F1 1407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 556 0.108804 ACGACGATTGTGCAGGGTAG 60.109 55.0 0.0 0.0 0.00 3.18 F
559 560 0.179073 CGATTGTGCAGGGTAGGGAG 60.179 60.0 0.0 0.0 0.00 4.30 F
973 1526 0.250513 GAAGCCTGTGTCCCTACTGG 59.749 60.0 0.0 0.0 41.18 4.00 F
1373 1944 0.471211 ACTTTGGACTCTCCCGACCA 60.471 55.0 0.0 0.0 35.03 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 2429 0.324368 TGTCCCATACGCCAGTCTCT 60.324 55.000 0.0 0.0 0.00 3.10 R
1754 2501 0.463833 GGCCTTACCAATGAGGGTCG 60.464 60.000 0.0 0.0 43.89 4.79 R
2187 2942 4.270834 TCGTGAGAGGATAGTAGCAAACT 58.729 43.478 0.0 0.0 37.68 2.66 R
3002 6433 1.491754 TGTGCATGTCCAGATAGGCAT 59.508 47.619 7.0 0.0 40.93 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 0.647410 CGAACAAGTGCAGCCTATCG 59.353 55.000 0.00 0.00 0.00 2.92
94 95 1.735700 CGAACAAGTGCAGCCTATCGA 60.736 52.381 5.48 0.00 0.00 3.59
157 158 6.446318 TGAAGAAAAACTAACATGGACATGC 58.554 36.000 11.96 0.00 42.39 4.06
188 189 7.915508 TGAAGCACATAACGATTTAATAGGTG 58.084 34.615 0.00 0.00 0.00 4.00
207 208 3.319122 GGTGCCATGTTTCTTCTTCAGTT 59.681 43.478 0.00 0.00 0.00 3.16
208 209 4.293415 GTGCCATGTTTCTTCTTCAGTTG 58.707 43.478 0.00 0.00 0.00 3.16
216 217 1.074405 TCTTCTTCAGTTGGGCATGCT 59.926 47.619 18.92 0.00 0.00 3.79
248 249 4.058817 GTTCTTTCCGTCAGTCAGTTCAT 58.941 43.478 0.00 0.00 0.00 2.57
293 294 2.483538 GCTGCTGCTTCAAAAGGGAAAA 60.484 45.455 8.53 0.00 36.03 2.29
297 298 4.240888 GCTGCTTCAAAAGGGAAAATCTC 58.759 43.478 0.00 0.00 0.00 2.75
314 315 3.712016 TCTCGGTGGGATGAAAAATCA 57.288 42.857 0.00 0.00 0.00 2.57
332 333 9.719279 GAAAAATCATCTTTGTTGCAATCAAAA 57.281 25.926 20.16 13.35 34.96 2.44
374 375 1.134551 GCCTGAAACCAAACCAAGCAA 60.135 47.619 0.00 0.00 0.00 3.91
376 377 2.935849 CCTGAAACCAAACCAAGCAAAC 59.064 45.455 0.00 0.00 0.00 2.93
410 411 5.886960 ATAAGCAGATTGAAGTGGTGTTC 57.113 39.130 0.00 0.00 0.00 3.18
504 505 0.178953 TGGTAGGTATAGGGACGGGC 60.179 60.000 0.00 0.00 0.00 6.13
548 549 0.584396 TCCAACAACGACGATTGTGC 59.416 50.000 13.82 0.00 42.01 4.57
554 555 0.319083 AACGACGATTGTGCAGGGTA 59.681 50.000 0.00 0.00 0.00 3.69
555 556 0.108804 ACGACGATTGTGCAGGGTAG 60.109 55.000 0.00 0.00 0.00 3.18
556 557 0.806102 CGACGATTGTGCAGGGTAGG 60.806 60.000 0.00 0.00 0.00 3.18
557 558 0.462047 GACGATTGTGCAGGGTAGGG 60.462 60.000 0.00 0.00 0.00 3.53
558 559 0.907704 ACGATTGTGCAGGGTAGGGA 60.908 55.000 0.00 0.00 0.00 4.20
559 560 0.179073 CGATTGTGCAGGGTAGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
560 561 0.912486 GATTGTGCAGGGTAGGGAGT 59.088 55.000 0.00 0.00 0.00 3.85
588 589 1.656095 GCGCACCTCGAATATCTATGC 59.344 52.381 0.30 0.00 41.67 3.14
635 636 6.678568 TTGAAAATGGGCTTCCTTATTTGA 57.321 33.333 0.00 0.00 0.00 2.69
639 640 3.085952 TGGGCTTCCTTATTTGACCAG 57.914 47.619 0.00 0.00 0.00 4.00
669 676 2.826674 TTTCCCTATTTGGCCCTCTG 57.173 50.000 0.00 0.00 0.00 3.35
678 688 5.835280 CCTATTTGGCCCTCTGTCATTTTAT 59.165 40.000 0.00 0.00 0.00 1.40
729 739 2.094762 AAGTGGCACGTGAATAGACC 57.905 50.000 22.23 10.36 0.00 3.85
819 1318 3.450817 CACCAAACCTCTTCCCTGTTTTT 59.549 43.478 0.00 0.00 30.19 1.94
846 1345 1.134965 AGATCTCGCCAAACCTCTTCG 60.135 52.381 0.00 0.00 0.00 3.79
973 1526 0.250513 GAAGCCTGTGTCCCTACTGG 59.749 60.000 0.00 0.00 41.18 4.00
1066 1619 3.536917 CCTCATCGGTGGCGCCTA 61.537 66.667 29.70 11.59 34.25 3.93
1141 1701 2.176273 GCTTCATCGATGGCGCTGT 61.176 57.895 24.61 0.00 35.33 4.40
1172 1735 1.339727 TGAAGACGACGATCTCCTCCA 60.340 52.381 0.00 0.00 0.00 3.86
1248 1811 4.393155 TGCAAGCGATGGCGAGGT 62.393 61.111 0.00 0.00 46.35 3.85
1263 1826 4.876752 GGTCTCCTCACTGACCCT 57.123 61.111 0.00 0.00 45.03 4.34
1272 1835 2.541466 CTCACTGACCCTAGGTTCCTT 58.459 52.381 8.29 0.00 35.25 3.36
1329 1892 3.071023 TCCTTGGTGTCTTTGAGATTCGT 59.929 43.478 0.00 0.00 0.00 3.85
1338 1901 4.017126 TCTTTGAGATTCGTAGCAGGAGA 58.983 43.478 0.00 0.00 0.00 3.71
1373 1944 0.471211 ACTTTGGACTCTCCCGACCA 60.471 55.000 0.00 0.00 35.03 4.02
1514 2257 0.530650 CCCATCACCGGTGAGAATCG 60.531 60.000 37.98 23.55 43.61 3.34
1587 2333 3.705934 TTGTGCTGCCGGTGACCAA 62.706 57.895 1.90 0.00 0.00 3.67
1620 2366 3.640407 GGCTGCCACTCCAGTCCA 61.640 66.667 15.17 0.00 35.28 4.02
1683 2429 3.197766 CCCTAGCATGTGTTTACTCCTCA 59.802 47.826 0.00 0.00 0.00 3.86
1754 2501 4.723754 GCTTTTTGTTGGTCGTTTTTCTGC 60.724 41.667 0.00 0.00 0.00 4.26
2064 2818 0.473694 TTGGAAGAGGGACAGGAGCA 60.474 55.000 0.00 0.00 0.00 4.26
2187 2942 6.547141 AGAGACTTTGTGAAACCAATCATTCA 59.453 34.615 0.00 0.00 34.36 2.57
2576 3341 9.840427 AACAAATGTGATGTAGTTTACTATTGC 57.160 29.630 0.00 0.00 0.00 3.56
2596 3365 4.430007 TGCTAGTATCTTGCCAAGTTACG 58.570 43.478 16.17 7.67 38.25 3.18
2604 3373 4.453751 TCTTGCCAAGTTACGTAACCTTT 58.546 39.130 29.87 18.38 36.88 3.11
2618 3391 5.357596 ACGTAACCTTTTCTTGCCTGTAAAA 59.642 36.000 0.00 0.00 0.00 1.52
2619 3392 6.127675 ACGTAACCTTTTCTTGCCTGTAAAAA 60.128 34.615 0.00 0.00 0.00 1.94
2620 3393 6.416750 CGTAACCTTTTCTTGCCTGTAAAAAG 59.583 38.462 0.00 0.00 38.07 2.27
2809 6209 8.521170 AAATGATGCATGAATATAGAGGATGG 57.479 34.615 2.46 0.00 0.00 3.51
2887 6297 7.281040 AGCTTCTGAGATTTTGATTGTTTGA 57.719 32.000 0.00 0.00 0.00 2.69
2890 6300 8.985805 GCTTCTGAGATTTTGATTGTTTGATTT 58.014 29.630 0.00 0.00 0.00 2.17
3002 6433 5.298989 AGGTGGTGAATACAGTGTTTGTA 57.701 39.130 0.00 0.00 45.86 2.41
3021 6452 2.267174 ATGCCTATCTGGACATGCAC 57.733 50.000 0.00 0.00 38.35 4.57
3135 6574 6.485648 TGTGGAGAAGCCTTAGAAAACTTAAC 59.514 38.462 0.00 0.00 37.63 2.01
3446 6888 5.220931 CCCAATTTCTACTGTAGCAAGATGC 60.221 44.000 9.98 0.00 45.46 3.91
3485 6927 2.017049 CCAGGGAATTTCAGCTTACCG 58.983 52.381 0.00 0.00 31.34 4.02
3505 6947 9.755064 CTTACCGTAGTGTTATTTGAAATCAAG 57.245 33.333 0.00 0.00 37.15 3.02
3569 7011 0.114954 AATGTGTGGTTCAGGCCCAT 59.885 50.000 0.00 0.00 33.76 4.00
3594 7036 7.319646 TGGATCACCAAAACTTATATGTTTGC 58.680 34.615 15.27 1.09 43.91 3.68
3600 7042 7.116233 CACCAAAACTTATATGTTTGCCAGTTC 59.884 37.037 15.27 0.00 39.71 3.01
3601 7043 6.589907 CCAAAACTTATATGTTTGCCAGTTCC 59.410 38.462 15.27 0.00 39.71 3.62
3665 7107 4.447724 CGATGTATTTTGTACCGATGGGAG 59.552 45.833 0.00 0.00 36.97 4.30
3674 7116 1.815421 CCGATGGGAGTTTCAGCCG 60.815 63.158 0.00 0.00 34.06 5.52
3688 7134 6.827727 AGTTTCAGCCGTAAATATGACCTAT 58.172 36.000 0.00 0.00 0.00 2.57
3717 7163 9.767684 TTATATTGTTGTGTATTCTTTTCAGCG 57.232 29.630 0.00 0.00 0.00 5.18
3741 7187 4.810491 GTGGTTTGAAAAGCATGTCATTGT 59.190 37.500 10.53 0.00 46.52 2.71
3754 7200 5.961843 GCATGTCATTGTTGTCGATCTTAAG 59.038 40.000 0.00 0.00 0.00 1.85
3756 7202 6.466308 TGTCATTGTTGTCGATCTTAAGTG 57.534 37.500 1.63 0.00 0.00 3.16
3768 7214 3.565764 TCTTAAGTGGCCATGATCCAG 57.434 47.619 9.72 0.56 33.63 3.86
3772 7218 3.959495 AAGTGGCCATGATCCAGTTAT 57.041 42.857 9.72 3.75 43.42 1.89
3773 7219 3.219176 AGTGGCCATGATCCAGTTATG 57.781 47.619 9.72 0.00 33.65 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.773033 AATGCTTCCAACCTATTTATTCTGAT 57.227 30.769 0.00 0.00 0.00 2.90
21 22 8.823220 ACTAACATAATGCTTCCAACCTATTT 57.177 30.769 0.00 0.00 0.00 1.40
115 116 6.561737 TCTTCAGCGTCCTGTAATATAGAG 57.438 41.667 0.00 0.00 40.09 2.43
116 117 6.954487 TTCTTCAGCGTCCTGTAATATAGA 57.046 37.500 0.00 0.00 40.09 1.98
117 118 8.328864 GTTTTTCTTCAGCGTCCTGTAATATAG 58.671 37.037 0.00 0.00 40.09 1.31
119 120 6.879458 AGTTTTTCTTCAGCGTCCTGTAATAT 59.121 34.615 0.00 0.00 40.09 1.28
120 121 6.228258 AGTTTTTCTTCAGCGTCCTGTAATA 58.772 36.000 0.00 0.00 40.09 0.98
121 122 5.063880 AGTTTTTCTTCAGCGTCCTGTAAT 58.936 37.500 0.00 0.00 40.09 1.89
122 123 4.448210 AGTTTTTCTTCAGCGTCCTGTAA 58.552 39.130 0.00 0.00 40.09 2.41
123 124 4.067972 AGTTTTTCTTCAGCGTCCTGTA 57.932 40.909 0.00 0.00 40.09 2.74
124 125 2.919228 AGTTTTTCTTCAGCGTCCTGT 58.081 42.857 0.00 0.00 40.09 4.00
157 158 1.795872 TCGTTATGTGCTTCAACGGTG 59.204 47.619 0.00 0.00 43.84 4.94
188 189 3.305608 CCCAACTGAAGAAGAAACATGGC 60.306 47.826 0.00 0.00 0.00 4.40
216 217 0.618458 CGGAAAGAACCTGATGGGGA 59.382 55.000 0.00 0.00 40.03 4.81
248 249 1.273986 TTGGAGGAGCTGCAGCCATA 61.274 55.000 34.39 12.87 43.38 2.74
293 294 4.235079 TGATTTTTCATCCCACCGAGAT 57.765 40.909 0.00 0.00 0.00 2.75
297 298 4.989279 AAGATGATTTTTCATCCCACCG 57.011 40.909 11.34 0.00 45.56 4.94
355 356 2.935849 GTTTGCTTGGTTTGGTTTCAGG 59.064 45.455 0.00 0.00 0.00 3.86
374 375 4.929479 TCTGCTTATACCATGGGTTTGTT 58.071 39.130 18.09 0.00 37.09 2.83
376 377 5.593909 TCAATCTGCTTATACCATGGGTTTG 59.406 40.000 18.09 7.18 37.09 2.93
410 411 0.602905 GACAACTCTCCACCCCAACG 60.603 60.000 0.00 0.00 0.00 4.10
485 486 0.178953 GCCCGTCCCTATACCTACCA 60.179 60.000 0.00 0.00 0.00 3.25
486 487 1.246737 CGCCCGTCCCTATACCTACC 61.247 65.000 0.00 0.00 0.00 3.18
494 495 2.036098 TCTGAACGCCCGTCCCTA 59.964 61.111 0.00 0.00 0.00 3.53
515 516 1.228862 TTGGAAGGAAGCCAAGGCC 60.229 57.895 7.62 0.00 40.32 5.19
548 549 0.467659 CGTCCCTACTCCCTACCCTG 60.468 65.000 0.00 0.00 0.00 4.45
556 557 4.509737 GTGCGCCGTCCCTACTCC 62.510 72.222 4.18 0.00 0.00 3.85
557 558 4.509737 GGTGCGCCGTCCCTACTC 62.510 72.222 4.18 0.00 0.00 2.59
559 560 4.509737 GAGGTGCGCCGTCCCTAC 62.510 72.222 11.42 0.00 40.50 3.18
588 589 3.555966 AGGGCCAAATAAGGAATTCTCG 58.444 45.455 6.18 0.00 0.00 4.04
729 739 1.407258 TCTGAACCAAAGGGCAAAACG 59.593 47.619 0.00 0.00 37.90 3.60
825 1324 2.275318 GAAGAGGTTTGGCGAGATCTG 58.725 52.381 0.00 0.00 0.00 2.90
846 1345 3.381908 TGAGATCTAGAAGAGGAAACGGC 59.618 47.826 0.00 0.00 0.00 5.68
980 1533 3.956377 TCCCCTGAAGGAGATCGC 58.044 61.111 0.00 0.00 38.24 4.58
1020 1573 4.111255 AGAGGAGATCATCTTCATCCGA 57.889 45.455 0.00 0.00 36.50 4.55
1066 1619 3.675698 GCGAGATCTTCTTCGTGAAACTT 59.324 43.478 0.00 0.00 33.79 2.66
1141 1701 2.646175 CGTCTTCAAGCGGGGAGGA 61.646 63.158 0.00 0.00 0.00 3.71
1248 1811 1.383963 ACCTAGGGTCAGTGAGGAGA 58.616 55.000 14.81 0.00 33.04 3.71
1257 1820 0.696501 GGCAAAGGAACCTAGGGTCA 59.303 55.000 28.03 0.00 33.12 4.02
1263 1826 1.272807 AGTAGCGGCAAAGGAACCTA 58.727 50.000 1.45 0.00 0.00 3.08
1272 1835 1.153249 GTGGGCATAGTAGCGGCAA 60.153 57.895 1.45 0.00 34.64 4.52
1329 1892 2.038863 TGAAGGGGTTTCTCCTGCTA 57.961 50.000 0.00 0.00 36.71 3.49
1338 1901 4.719273 TCCAAAGTTGAAATGAAGGGGTTT 59.281 37.500 0.00 0.00 0.00 3.27
1572 2318 4.641645 CCTTGGTCACCGGCAGCA 62.642 66.667 0.00 0.39 0.00 4.41
1620 2366 4.798882 TGGACACCAAGACCACTTTTATT 58.201 39.130 0.00 0.00 37.14 1.40
1683 2429 0.324368 TGTCCCATACGCCAGTCTCT 60.324 55.000 0.00 0.00 0.00 3.10
1754 2501 0.463833 GGCCTTACCAATGAGGGTCG 60.464 60.000 0.00 0.00 43.89 4.79
1941 2692 7.197924 CCTTTGCCACATTTGGAAGAAAGGA 62.198 44.000 21.17 0.00 46.47 3.36
2187 2942 4.270834 TCGTGAGAGGATAGTAGCAAACT 58.729 43.478 0.00 0.00 37.68 2.66
2576 3341 6.474751 GGTTACGTAACTTGGCAAGATACTAG 59.525 42.308 31.71 23.73 35.37 2.57
2596 3365 6.700081 CCTTTTTACAGGCAAGAAAAGGTTAC 59.300 38.462 18.33 0.00 46.59 2.50
2618 3391 4.913784 TCCATAGACTTTTTAACGGCCTT 58.086 39.130 0.00 0.00 0.00 4.35
2619 3392 4.563140 TCCATAGACTTTTTAACGGCCT 57.437 40.909 0.00 0.00 0.00 5.19
2620 3393 5.182570 ACTTTCCATAGACTTTTTAACGGCC 59.817 40.000 0.00 0.00 0.00 6.13
2621 3394 6.072893 TCACTTTCCATAGACTTTTTAACGGC 60.073 38.462 0.00 0.00 0.00 5.68
2755 6155 5.645056 TTAGATCCAATGGATGTGCCTAA 57.355 39.130 21.01 16.56 43.27 2.69
2809 6209 5.931441 ACTAGCACATCAAAGAAGACAAC 57.069 39.130 0.00 0.00 0.00 3.32
3002 6433 1.491754 TGTGCATGTCCAGATAGGCAT 59.508 47.619 7.00 0.00 40.93 4.40
3021 6452 5.986004 AACTAAACAAACGGAGAACTCTG 57.014 39.130 8.85 8.85 41.63 3.35
3083 6515 2.001076 AGTCCCAGCCCAAAAAGAAG 57.999 50.000 0.00 0.00 0.00 2.85
3135 6574 8.803799 GCAATAAACCAATAACTAAATTGACCG 58.196 33.333 0.00 0.00 38.84 4.79
3446 6888 5.303971 CCTGGATTAGGTATTCAGAAGCAG 58.696 45.833 0.00 0.00 41.76 4.24
3539 6981 3.469008 ACCACACATTGTCGAAGAGAA 57.531 42.857 0.00 0.00 45.98 2.87
3569 7011 7.319646 GCAAACATATAAGTTTTGGTGATCCA 58.680 34.615 3.39 0.00 39.55 3.41
3600 7042 4.627467 CACAAGAACCGAGAAGAATACAGG 59.373 45.833 0.00 0.00 0.00 4.00
3601 7043 4.092091 GCACAAGAACCGAGAAGAATACAG 59.908 45.833 0.00 0.00 0.00 2.74
3665 7107 7.871463 AGTATAGGTCATATTTACGGCTGAAAC 59.129 37.037 0.00 0.00 0.00 2.78
3717 7163 3.451141 TGACATGCTTTTCAAACCACC 57.549 42.857 0.00 0.00 0.00 4.61
3741 7187 3.055458 TCATGGCCACTTAAGATCGACAA 60.055 43.478 8.16 0.00 0.00 3.18
3754 7200 1.610522 GCATAACTGGATCATGGCCAC 59.389 52.381 8.16 0.00 0.00 5.01
3756 7202 2.157738 GAGCATAACTGGATCATGGCC 58.842 52.381 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.