Multiple sequence alignment - TraesCS3A01G062200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G062200 chr3A 100.000 2925 0 0 1 2925 37300827 37303751 0.000000e+00 5402.0
1 TraesCS3A01G062200 chr3A 95.034 1490 61 4 1445 2925 37234028 37235513 0.000000e+00 2329.0
2 TraesCS3A01G062200 chr3A 91.453 1287 92 10 962 2234 36940898 36942180 0.000000e+00 1751.0
3 TraesCS3A01G062200 chr3A 93.720 844 35 3 606 1449 37231397 37232222 0.000000e+00 1249.0
4 TraesCS3A01G062200 chr3A 89.908 327 15 8 1 309 37194474 37194800 3.510000e-109 405.0
5 TraesCS3A01G062200 chr3A 87.143 70 8 1 368 436 711581373 711581442 8.690000e-11 78.7
6 TraesCS3A01G062200 chr3D 92.604 2231 129 16 713 2925 26681372 26683584 0.000000e+00 3173.0
7 TraesCS3A01G062200 chr3D 90.979 2206 155 16 735 2925 26816225 26814049 0.000000e+00 2931.0
8 TraesCS3A01G062200 chr3D 89.547 1301 110 16 1635 2925 27057071 27055787 0.000000e+00 1626.0
9 TraesCS3A01G062200 chr3D 84.543 1061 151 7 1863 2915 27060338 27059283 0.000000e+00 1038.0
10 TraesCS3A01G062200 chr3D 92.973 185 7 4 79 259 26681058 26681240 6.220000e-67 265.0
11 TraesCS3A01G062200 chr3D 87.029 239 22 5 1 233 26816344 26816109 8.040000e-66 261.0
12 TraesCS3A01G062200 chr3D 82.353 102 17 1 435 535 288825740 288825639 1.440000e-13 87.9
13 TraesCS3A01G062200 chr3D 95.918 49 2 0 19 67 26681014 26681062 2.420000e-11 80.5
14 TraesCS3A01G062200 chr3D 87.879 66 8 0 371 436 537154540 537154475 8.690000e-11 78.7
15 TraesCS3A01G062200 chr3D 93.878 49 3 0 38 86 27057303 27057255 1.120000e-09 75.0
16 TraesCS3A01G062200 chrUn 91.808 2063 137 14 884 2925 38671586 38669535 0.000000e+00 2844.0
17 TraesCS3A01G062200 chrUn 90.373 1153 88 13 1792 2925 39209098 39210246 0.000000e+00 1493.0
18 TraesCS3A01G062200 chrUn 90.286 1153 89 12 1792 2925 311243891 311242743 0.000000e+00 1487.0
19 TraesCS3A01G062200 chrUn 90.788 1129 65 19 553 1664 287694892 287695998 0.000000e+00 1472.0
20 TraesCS3A01G062200 chrUn 90.788 1129 65 19 553 1664 287707096 287708202 0.000000e+00 1472.0
21 TraesCS3A01G062200 chrUn 90.788 1129 65 19 553 1664 294703109 294704215 0.000000e+00 1472.0
22 TraesCS3A01G062200 chrUn 83.889 1080 153 15 1857 2925 38680108 38679039 0.000000e+00 1011.0
23 TraesCS3A01G062200 chrUn 85.375 253 21 6 128 375 287694538 287694779 6.260000e-62 248.0
24 TraesCS3A01G062200 chrUn 85.375 253 21 6 128 375 287706742 287706983 6.260000e-62 248.0
25 TraesCS3A01G062200 chrUn 85.375 253 21 6 128 375 294702755 294702996 6.260000e-62 248.0
26 TraesCS3A01G062200 chrUn 89.844 128 11 1 1 126 287691255 287691382 2.330000e-36 163.0
27 TraesCS3A01G062200 chrUn 89.844 128 11 1 1 126 287703459 287703586 2.330000e-36 163.0
28 TraesCS3A01G062200 chrUn 89.844 128 11 1 1 126 382797026 382797153 2.330000e-36 163.0
29 TraesCS3A01G062200 chrUn 90.400 125 10 1 4 126 382884866 382884742 2.330000e-36 163.0
30 TraesCS3A01G062200 chrUn 90.400 125 10 1 4 126 471230820 471230696 2.330000e-36 163.0
31 TraesCS3A01G062200 chrUn 78.125 128 18 5 738 856 38671707 38671581 4.040000e-09 73.1
32 TraesCS3A01G062200 chr2A 75.394 317 71 6 1153 1464 17930268 17930582 2.350000e-31 147.0
33 TraesCS3A01G062200 chr2B 75.079 317 72 6 1153 1464 28272115 28272429 1.090000e-29 141.0
34 TraesCS3A01G062200 chr1A 87.273 110 9 5 435 542 34150692 34150586 1.420000e-23 121.0
35 TraesCS3A01G062200 chr2D 85.437 103 14 1 435 536 305074754 305074856 3.990000e-19 106.0
36 TraesCS3A01G062200 chr1D 85.714 98 14 0 435 532 6543667 6543570 1.430000e-18 104.0
37 TraesCS3A01G062200 chr1D 83.962 106 16 1 432 536 411119134 411119239 1.850000e-17 100.0
38 TraesCS3A01G062200 chr1D 82.692 104 18 0 432 535 342127085 342127188 3.100000e-15 93.5
39 TraesCS3A01G062200 chr1D 85.075 67 10 0 370 436 87899483 87899549 5.230000e-08 69.4
40 TraesCS3A01G062200 chr5B 83.333 102 16 1 435 535 669563938 669564039 3.100000e-15 93.5
41 TraesCS3A01G062200 chr5A 83.333 102 16 1 435 535 113610635 113610534 3.100000e-15 93.5
42 TraesCS3A01G062200 chr6D 92.982 57 3 1 432 487 280901112 280901168 6.720000e-12 82.4
43 TraesCS3A01G062200 chr6A 89.062 64 5 2 374 436 398168513 398168575 8.690000e-11 78.7
44 TraesCS3A01G062200 chr7B 86.364 66 9 0 371 436 672765931 672765996 4.040000e-09 73.1
45 TraesCS3A01G062200 chr7D 85.294 68 9 1 369 436 555612374 555612308 5.230000e-08 69.4
46 TraesCS3A01G062200 chr7D 82.432 74 12 1 364 436 611717285 611717212 2.430000e-06 63.9
47 TraesCS3A01G062200 chr5D 85.714 63 9 0 374 436 55213164 55213102 1.880000e-07 67.6
48 TraesCS3A01G062200 chr4A 85.714 63 9 0 374 436 734933203 734933265 1.880000e-07 67.6
49 TraesCS3A01G062200 chr7A 100.000 28 0 0 691 718 50815502 50815529 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G062200 chr3A 37300827 37303751 2924 False 5402.000000 5402 100.000000 1 2925 1 chr3A.!!$F3 2924
1 TraesCS3A01G062200 chr3A 37231397 37235513 4116 False 1789.000000 2329 94.377000 606 2925 2 chr3A.!!$F5 2319
2 TraesCS3A01G062200 chr3A 36940898 36942180 1282 False 1751.000000 1751 91.453000 962 2234 1 chr3A.!!$F1 1272
3 TraesCS3A01G062200 chr3D 26814049 26816344 2295 True 1596.000000 2931 89.004000 1 2925 2 chr3D.!!$R3 2924
4 TraesCS3A01G062200 chr3D 26681014 26683584 2570 False 1172.833333 3173 93.831667 19 2925 3 chr3D.!!$F1 2906
5 TraesCS3A01G062200 chr3D 27055787 27060338 4551 True 913.000000 1626 89.322667 38 2925 3 chr3D.!!$R4 2887
6 TraesCS3A01G062200 chrUn 39209098 39210246 1148 False 1493.000000 1493 90.373000 1792 2925 1 chrUn.!!$F1 1133
7 TraesCS3A01G062200 chrUn 311242743 311243891 1148 True 1487.000000 1487 90.286000 1792 2925 1 chrUn.!!$R2 1133
8 TraesCS3A01G062200 chrUn 38669535 38671707 2172 True 1458.550000 2844 84.966500 738 2925 2 chrUn.!!$R5 2187
9 TraesCS3A01G062200 chrUn 38679039 38680108 1069 True 1011.000000 1011 83.889000 1857 2925 1 chrUn.!!$R1 1068
10 TraesCS3A01G062200 chrUn 294702755 294704215 1460 False 860.000000 1472 88.081500 128 1664 2 chrUn.!!$F5 1536
11 TraesCS3A01G062200 chrUn 287691255 287695998 4743 False 627.666667 1472 88.669000 1 1664 3 chrUn.!!$F3 1663
12 TraesCS3A01G062200 chrUn 287703459 287708202 4743 False 627.666667 1472 88.669000 1 1664 3 chrUn.!!$F4 1663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 6442 0.170116 TAATTTTTGCTCCGCCGCAG 59.830 50.0 0.0 0.0 41.55 5.18 F
508 6496 0.661020 AAGCACAAAAACCGAGGACG 59.339 50.0 0.0 0.0 39.43 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 9400 0.460311 AAATCAGTACCTCCTCCGCG 59.540 55.0 0.0 0.0 0.0 6.46 R
2118 10105 1.090833 ACTCCTACCCTACCCACTGT 58.909 55.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 2896 4.690719 AATTCCACGACCGGCGCA 62.691 61.111 10.83 0.63 46.04 6.09
186 6174 1.819903 GACTTGCCTCGGAGTCTTACT 59.180 52.381 4.02 0.00 39.30 2.24
204 6192 6.425114 GTCTTACTCACCAGCACCAATATATG 59.575 42.308 0.00 0.00 0.00 1.78
233 6221 7.285783 CAAGTTCATTGCACCAAAGATATTG 57.714 36.000 0.00 0.00 30.65 1.90
259 6247 0.397254 ACTACTCCCTCCGTCCCATG 60.397 60.000 0.00 0.00 0.00 3.66
260 6248 1.749334 CTACTCCCTCCGTCCCATGC 61.749 65.000 0.00 0.00 0.00 4.06
261 6249 2.523740 TACTCCCTCCGTCCCATGCA 62.524 60.000 0.00 0.00 0.00 3.96
262 6250 2.366837 TCCCTCCGTCCCATGCAT 60.367 61.111 0.00 0.00 0.00 3.96
272 6260 3.067106 CGTCCCATGCATAATGTAGGAC 58.933 50.000 0.00 8.29 41.08 3.85
273 6261 3.067106 GTCCCATGCATAATGTAGGACG 58.933 50.000 0.00 0.00 37.66 4.79
303 6291 5.599999 ACGCTAGTGTCAGAAAATATCCT 57.400 39.130 2.24 0.00 0.00 3.24
305 6293 7.291411 ACGCTAGTGTCAGAAAATATCCTAT 57.709 36.000 2.24 0.00 0.00 2.57
306 6294 8.405418 ACGCTAGTGTCAGAAAATATCCTATA 57.595 34.615 2.24 0.00 0.00 1.31
307 6295 9.026121 ACGCTAGTGTCAGAAAATATCCTATAT 57.974 33.333 2.24 0.00 0.00 0.86
363 6351 4.401202 AGATGTGCATGCATTCTCAAATCA 59.599 37.500 25.64 13.86 0.00 2.57
365 6353 4.884247 TGTGCATGCATTCTCAAATCAAA 58.116 34.783 25.64 0.00 0.00 2.69
380 6368 9.807921 TCTCAAATCAAATTTTAACTACTCCCT 57.192 29.630 0.00 0.00 0.00 4.20
383 6371 9.341899 CAAATCAAATTTTAACTACTCCCTTCG 57.658 33.333 0.00 0.00 0.00 3.79
384 6372 8.631480 AATCAAATTTTAACTACTCCCTTCGT 57.369 30.769 0.00 0.00 0.00 3.85
385 6373 8.631480 ATCAAATTTTAACTACTCCCTTCGTT 57.369 30.769 0.00 0.00 0.00 3.85
386 6374 8.454570 TCAAATTTTAACTACTCCCTTCGTTT 57.545 30.769 0.00 0.00 0.00 3.60
387 6375 8.562052 TCAAATTTTAACTACTCCCTTCGTTTC 58.438 33.333 0.00 0.00 0.00 2.78
388 6376 8.347035 CAAATTTTAACTACTCCCTTCGTTTCA 58.653 33.333 0.00 0.00 0.00 2.69
389 6377 8.454570 AATTTTAACTACTCCCTTCGTTTCAA 57.545 30.769 0.00 0.00 0.00 2.69
390 6378 7.862512 TTTTAACTACTCCCTTCGTTTCAAA 57.137 32.000 0.00 0.00 0.00 2.69
391 6379 7.862512 TTTAACTACTCCCTTCGTTTCAAAA 57.137 32.000 0.00 0.00 0.00 2.44
392 6380 8.454570 TTTAACTACTCCCTTCGTTTCAAAAT 57.545 30.769 0.00 0.00 0.00 1.82
393 6381 9.558396 TTTAACTACTCCCTTCGTTTCAAAATA 57.442 29.630 0.00 0.00 0.00 1.40
394 6382 9.729281 TTAACTACTCCCTTCGTTTCAAAATAT 57.271 29.630 0.00 0.00 0.00 1.28
396 6384 8.943909 ACTACTCCCTTCGTTTCAAAATATAG 57.056 34.615 0.00 0.00 0.00 1.31
397 6385 8.537858 ACTACTCCCTTCGTTTCAAAATATAGT 58.462 33.333 0.00 0.00 0.00 2.12
399 6387 8.713737 ACTCCCTTCGTTTCAAAATATAGTAC 57.286 34.615 0.00 0.00 0.00 2.73
400 6388 8.316214 ACTCCCTTCGTTTCAAAATATAGTACA 58.684 33.333 0.00 0.00 0.00 2.90
401 6389 8.483307 TCCCTTCGTTTCAAAATATAGTACAC 57.517 34.615 0.00 0.00 0.00 2.90
402 6390 8.316214 TCCCTTCGTTTCAAAATATAGTACACT 58.684 33.333 0.00 0.00 0.00 3.55
403 6391 8.601476 CCCTTCGTTTCAAAATATAGTACACTC 58.399 37.037 0.00 0.00 0.00 3.51
404 6392 8.318876 CCTTCGTTTCAAAATATAGTACACTCG 58.681 37.037 0.00 0.00 0.00 4.18
405 6393 7.213252 TCGTTTCAAAATATAGTACACTCGC 57.787 36.000 0.00 0.00 0.00 5.03
406 6394 6.021232 TCGTTTCAAAATATAGTACACTCGCG 60.021 38.462 0.00 0.00 0.00 5.87
407 6395 6.237384 CGTTTCAAAATATAGTACACTCGCGT 60.237 38.462 5.77 0.00 0.00 6.01
408 6396 7.450627 GTTTCAAAATATAGTACACTCGCGTT 58.549 34.615 5.77 0.00 0.00 4.84
409 6397 7.585286 TTCAAAATATAGTACACTCGCGTTT 57.415 32.000 5.77 0.00 0.00 3.60
410 6398 7.585286 TCAAAATATAGTACACTCGCGTTTT 57.415 32.000 5.77 0.00 0.00 2.43
411 6399 8.020861 TCAAAATATAGTACACTCGCGTTTTT 57.979 30.769 5.77 0.00 0.00 1.94
412 6400 8.164153 TCAAAATATAGTACACTCGCGTTTTTC 58.836 33.333 5.77 0.00 0.00 2.29
413 6401 5.861491 ATATAGTACACTCGCGTTTTTCG 57.139 39.130 5.77 0.00 43.12 3.46
414 6402 2.124011 AGTACACTCGCGTTTTTCGA 57.876 45.000 5.77 0.00 42.86 3.71
422 6410 3.163642 TCGCGTTTTTCGAGATTCAAC 57.836 42.857 5.77 0.00 42.74 3.18
423 6411 2.798283 TCGCGTTTTTCGAGATTCAACT 59.202 40.909 5.77 0.00 42.74 3.16
424 6412 3.246699 TCGCGTTTTTCGAGATTCAACTT 59.753 39.130 5.77 0.00 42.74 2.66
425 6413 3.966218 CGCGTTTTTCGAGATTCAACTTT 59.034 39.130 0.00 0.00 41.61 2.66
426 6414 4.144027 CGCGTTTTTCGAGATTCAACTTTG 60.144 41.667 0.00 0.00 41.61 2.77
427 6415 4.967575 GCGTTTTTCGAGATTCAACTTTGA 59.032 37.500 0.00 0.00 42.86 2.69
428 6416 5.108742 GCGTTTTTCGAGATTCAACTTTGAC 60.109 40.000 0.00 0.00 42.86 3.18
429 6417 5.395486 CGTTTTTCGAGATTCAACTTTGACC 59.605 40.000 0.00 0.00 42.86 4.02
430 6418 6.262601 GTTTTTCGAGATTCAACTTTGACCA 58.737 36.000 0.00 0.00 36.83 4.02
431 6419 6.633500 TTTTCGAGATTCAACTTTGACCAT 57.367 33.333 0.00 0.00 36.83 3.55
432 6420 7.737972 TTTTCGAGATTCAACTTTGACCATA 57.262 32.000 0.00 0.00 36.83 2.74
433 6421 7.737972 TTTCGAGATTCAACTTTGACCATAA 57.262 32.000 0.00 0.00 36.83 1.90
434 6422 7.737972 TTCGAGATTCAACTTTGACCATAAA 57.262 32.000 0.00 0.00 36.83 1.40
435 6423 7.921786 TCGAGATTCAACTTTGACCATAAAT 57.078 32.000 0.00 0.00 36.83 1.40
436 6424 9.443323 TTCGAGATTCAACTTTGACCATAAATA 57.557 29.630 0.00 0.00 36.83 1.40
437 6425 9.443323 TCGAGATTCAACTTTGACCATAAATAA 57.557 29.630 0.00 0.00 36.83 1.40
447 6435 9.435688 ACTTTGACCATAAATAATTTTTGCTCC 57.564 29.630 0.00 0.00 0.00 4.70
448 6436 8.472683 TTTGACCATAAATAATTTTTGCTCCG 57.527 30.769 0.00 0.00 0.00 4.63
449 6437 6.039616 TGACCATAAATAATTTTTGCTCCGC 58.960 36.000 0.00 0.00 0.00 5.54
450 6438 5.356426 ACCATAAATAATTTTTGCTCCGCC 58.644 37.500 0.00 0.00 0.00 6.13
451 6439 4.444056 CCATAAATAATTTTTGCTCCGCCG 59.556 41.667 0.00 0.00 0.00 6.46
452 6440 1.921243 AATAATTTTTGCTCCGCCGC 58.079 45.000 0.00 0.00 0.00 6.53
453 6441 0.814457 ATAATTTTTGCTCCGCCGCA 59.186 45.000 0.00 0.00 38.31 5.69
454 6442 0.170116 TAATTTTTGCTCCGCCGCAG 59.830 50.000 0.00 0.00 41.55 5.18
455 6443 1.805428 AATTTTTGCTCCGCCGCAGT 61.805 50.000 0.00 0.00 41.55 4.40
456 6444 2.200170 ATTTTTGCTCCGCCGCAGTC 62.200 55.000 0.00 0.00 41.55 3.51
467 6455 2.254350 CGCAGTCGGTCTCGTTGA 59.746 61.111 0.00 0.00 37.69 3.18
468 6456 1.154016 CGCAGTCGGTCTCGTTGAT 60.154 57.895 0.00 0.00 37.69 2.57
469 6457 0.732880 CGCAGTCGGTCTCGTTGATT 60.733 55.000 0.00 0.00 37.69 2.57
470 6458 1.466866 CGCAGTCGGTCTCGTTGATTA 60.467 52.381 0.00 0.00 37.69 1.75
471 6459 2.602878 GCAGTCGGTCTCGTTGATTAA 58.397 47.619 0.00 0.00 37.69 1.40
472 6460 2.991190 GCAGTCGGTCTCGTTGATTAAA 59.009 45.455 0.00 0.00 37.69 1.52
473 6461 3.617263 GCAGTCGGTCTCGTTGATTAAAT 59.383 43.478 0.00 0.00 37.69 1.40
474 6462 4.802039 GCAGTCGGTCTCGTTGATTAAATA 59.198 41.667 0.00 0.00 37.69 1.40
475 6463 5.462398 GCAGTCGGTCTCGTTGATTAAATAT 59.538 40.000 0.00 0.00 37.69 1.28
476 6464 6.639686 GCAGTCGGTCTCGTTGATTAAATATA 59.360 38.462 0.00 0.00 37.69 0.86
477 6465 7.328737 GCAGTCGGTCTCGTTGATTAAATATAT 59.671 37.037 0.00 0.00 37.69 0.86
478 6466 8.639428 CAGTCGGTCTCGTTGATTAAATATATG 58.361 37.037 0.00 0.00 37.69 1.78
479 6467 7.813148 AGTCGGTCTCGTTGATTAAATATATGG 59.187 37.037 0.00 0.00 37.69 2.74
480 6468 7.597743 GTCGGTCTCGTTGATTAAATATATGGT 59.402 37.037 0.00 0.00 37.69 3.55
481 6469 7.811236 TCGGTCTCGTTGATTAAATATATGGTC 59.189 37.037 0.00 0.00 37.69 4.02
482 6470 7.597369 CGGTCTCGTTGATTAAATATATGGTCA 59.403 37.037 0.00 0.00 0.00 4.02
483 6471 9.268268 GGTCTCGTTGATTAAATATATGGTCAA 57.732 33.333 0.00 0.00 0.00 3.18
488 6476 9.580916 CGTTGATTAAATATATGGTCAAAGTCG 57.419 33.333 0.00 0.00 0.00 4.18
492 6480 9.813080 GATTAAATATATGGTCAAAGTCGAAGC 57.187 33.333 0.00 0.00 0.00 3.86
493 6481 8.725405 TTAAATATATGGTCAAAGTCGAAGCA 57.275 30.769 0.00 0.00 0.00 3.91
494 6482 6.604735 AATATATGGTCAAAGTCGAAGCAC 57.395 37.500 0.00 0.00 0.00 4.40
495 6483 2.254546 ATGGTCAAAGTCGAAGCACA 57.745 45.000 0.00 0.00 0.00 4.57
496 6484 2.031258 TGGTCAAAGTCGAAGCACAA 57.969 45.000 0.00 0.00 0.00 3.33
497 6485 2.360844 TGGTCAAAGTCGAAGCACAAA 58.639 42.857 0.00 0.00 0.00 2.83
498 6486 2.750166 TGGTCAAAGTCGAAGCACAAAA 59.250 40.909 0.00 0.00 0.00 2.44
499 6487 3.191581 TGGTCAAAGTCGAAGCACAAAAA 59.808 39.130 0.00 0.00 0.00 1.94
500 6488 3.546271 GGTCAAAGTCGAAGCACAAAAAC 59.454 43.478 0.00 0.00 0.00 2.43
501 6489 3.546271 GTCAAAGTCGAAGCACAAAAACC 59.454 43.478 0.00 0.00 0.00 3.27
502 6490 2.468532 AAGTCGAAGCACAAAAACCG 57.531 45.000 0.00 0.00 0.00 4.44
503 6491 1.658994 AGTCGAAGCACAAAAACCGA 58.341 45.000 0.00 0.00 0.00 4.69
504 6492 1.597663 AGTCGAAGCACAAAAACCGAG 59.402 47.619 0.00 0.00 0.00 4.63
505 6493 0.941542 TCGAAGCACAAAAACCGAGG 59.058 50.000 0.00 0.00 0.00 4.63
506 6494 0.941542 CGAAGCACAAAAACCGAGGA 59.058 50.000 0.00 0.00 0.00 3.71
507 6495 1.333791 CGAAGCACAAAAACCGAGGAC 60.334 52.381 0.00 0.00 0.00 3.85
508 6496 0.661020 AAGCACAAAAACCGAGGACG 59.339 50.000 0.00 0.00 39.43 4.79
509 6497 1.370051 GCACAAAAACCGAGGACGC 60.370 57.895 0.00 0.00 38.29 5.19
510 6498 1.083015 CACAAAAACCGAGGACGCG 60.083 57.895 3.53 3.53 38.29 6.01
511 6499 1.522130 ACAAAAACCGAGGACGCGT 60.522 52.632 13.85 13.85 38.29 6.01
512 6500 1.091197 ACAAAAACCGAGGACGCGTT 61.091 50.000 15.53 0.00 38.29 4.84
513 6501 0.860533 CAAAAACCGAGGACGCGTTA 59.139 50.000 15.53 0.00 38.29 3.18
514 6502 1.461897 CAAAAACCGAGGACGCGTTAT 59.538 47.619 15.53 4.69 38.29 1.89
515 6503 2.652941 AAAACCGAGGACGCGTTATA 57.347 45.000 15.53 0.00 38.29 0.98
516 6504 2.877043 AAACCGAGGACGCGTTATAT 57.123 45.000 15.53 0.00 38.29 0.86
517 6505 2.877043 AACCGAGGACGCGTTATATT 57.123 45.000 15.53 0.47 38.29 1.28
518 6506 2.877043 ACCGAGGACGCGTTATATTT 57.123 45.000 15.53 0.00 38.29 1.40
519 6507 3.988379 ACCGAGGACGCGTTATATTTA 57.012 42.857 15.53 0.00 38.29 1.40
520 6508 3.893720 ACCGAGGACGCGTTATATTTAG 58.106 45.455 15.53 0.25 38.29 1.85
521 6509 3.240069 CCGAGGACGCGTTATATTTAGG 58.760 50.000 15.53 5.69 38.29 2.69
522 6510 3.240069 CGAGGACGCGTTATATTTAGGG 58.760 50.000 15.53 0.00 0.00 3.53
523 6511 3.058016 CGAGGACGCGTTATATTTAGGGA 60.058 47.826 15.53 0.00 0.00 4.20
524 6512 4.233005 GAGGACGCGTTATATTTAGGGAC 58.767 47.826 15.53 0.00 0.00 4.46
525 6513 2.982470 GGACGCGTTATATTTAGGGACG 59.018 50.000 15.53 0.00 36.85 4.79
526 6514 3.304659 GGACGCGTTATATTTAGGGACGA 60.305 47.826 15.53 0.00 35.90 4.20
527 6515 4.290155 GACGCGTTATATTTAGGGACGAA 58.710 43.478 15.53 0.00 35.90 3.85
528 6516 4.293415 ACGCGTTATATTTAGGGACGAAG 58.707 43.478 5.58 0.00 35.90 3.79
529 6517 3.671928 CGCGTTATATTTAGGGACGAAGG 59.328 47.826 0.00 0.00 35.90 3.46
530 6518 3.992427 GCGTTATATTTAGGGACGAAGGG 59.008 47.826 0.00 0.00 35.90 3.95
531 6519 4.262164 GCGTTATATTTAGGGACGAAGGGA 60.262 45.833 0.00 0.00 35.90 4.20
532 6520 5.467705 CGTTATATTTAGGGACGAAGGGAG 58.532 45.833 0.00 0.00 35.90 4.30
661 6746 2.034066 CCACGGACATTGCACCCT 59.966 61.111 0.00 0.00 0.00 4.34
673 6758 3.031417 GCACCCTCGCTACACCCAT 62.031 63.158 0.00 0.00 0.00 4.00
693 6778 4.679654 CCATGACCGAAAACTTAGCAAAAC 59.320 41.667 0.00 0.00 0.00 2.43
810 6895 3.381949 GTGACTTGGACACAGTACAGTC 58.618 50.000 0.00 0.00 38.05 3.51
812 6897 3.181479 TGACTTGGACACAGTACAGTCAC 60.181 47.826 12.98 5.56 33.26 3.67
814 6899 1.045407 TGGACACAGTACAGTCACCC 58.955 55.000 12.98 4.94 36.50 4.61
816 6901 0.672342 GACACAGTACAGTCACCCGT 59.328 55.000 0.00 0.00 34.93 5.28
1070 7172 6.445139 TCATGGTTATTTCTCTTCCTCTTCCT 59.555 38.462 0.00 0.00 0.00 3.36
1118 7220 3.279434 GGTTCACCAGAAAGTTCAGTGT 58.721 45.455 11.64 0.00 36.05 3.55
1377 7486 0.901827 ACACCATCATGTACGGCTCA 59.098 50.000 0.00 0.00 0.00 4.26
1394 7507 2.625737 CTCATCTGACATCGGCTTTGT 58.374 47.619 0.00 0.00 0.00 2.83
1477 9400 1.578206 GAAGGTGCAGTCTTTCCGCC 61.578 60.000 4.04 0.00 0.00 6.13
1630 9567 1.081892 CTTTCATGTGGTCCTCTGCG 58.918 55.000 0.00 0.00 0.00 5.18
1754 9705 6.656693 AGAAGAAATGATACCACCTGAAACTG 59.343 38.462 0.00 0.00 0.00 3.16
1830 9801 5.719563 ACCCAAAATACCAGGGAAACTTATG 59.280 40.000 3.32 0.00 45.80 1.90
1855 9828 1.264295 ACCTGGACCGAGAAAGTACC 58.736 55.000 0.00 0.00 0.00 3.34
2038 10025 4.263506 GGGGAAGTTCTTCCTGAAAGATGA 60.264 45.833 24.77 0.00 43.50 2.92
2197 10184 2.639065 GAACAGATGGGCCGATTTGTA 58.361 47.619 21.74 0.00 0.00 2.41
2295 10282 2.622064 GTTGTCTGTCCAACAGGAGT 57.378 50.000 7.21 0.00 45.94 3.85
2296 10283 3.746045 GTTGTCTGTCCAACAGGAGTA 57.254 47.619 7.21 0.00 45.94 2.59
2297 10284 3.391049 GTTGTCTGTCCAACAGGAGTAC 58.609 50.000 7.21 0.00 45.94 2.73
2345 10332 3.300239 AGCTCTCCTTACCGTGAGTAT 57.700 47.619 0.00 0.00 0.00 2.12
2377 10364 9.912634 ATACCTTTCAAACTAAACATGTTGATG 57.087 29.630 12.82 7.92 35.49 3.07
2454 10445 4.321601 GGTGCGATAGACAGATCAGCTAAT 60.322 45.833 0.00 0.00 39.76 1.73
2457 10448 4.617995 GCGATAGACAGATCAGCTAATGCT 60.618 45.833 0.00 0.00 46.59 3.79
2496 10488 0.694771 AGCTCATGAGGAAGCCACAA 59.305 50.000 23.89 0.00 0.00 3.33
2499 10491 2.787994 CTCATGAGGAAGCCACAACTT 58.212 47.619 15.38 0.00 0.00 2.66
2534 10529 3.567478 AGATGAAGTGAGGGGTATTGC 57.433 47.619 0.00 0.00 0.00 3.56
2546 10541 1.520787 GTATTGCACCCCGAGGACG 60.521 63.158 0.00 0.00 36.73 4.79
2556 10551 2.770232 ACCCCGAGGACGAGAAATTATT 59.230 45.455 0.00 0.00 42.66 1.40
2597 10592 2.159226 ACATGACGTACCTAAGAGCAGC 60.159 50.000 0.00 0.00 0.00 5.25
2624 10619 2.353607 GTCGCTCCGGCTACATCG 60.354 66.667 0.00 0.00 34.77 3.84
2721 10716 2.173382 GTGGTCGTCAATGCGTGC 59.827 61.111 0.00 0.00 0.00 5.34
2843 10839 3.745799 TGATTTCCAGTTCTTGCCGTTA 58.254 40.909 0.00 0.00 0.00 3.18
2887 10883 2.100916 CTGGTATGAACCTCGGAATCGT 59.899 50.000 0.00 0.00 46.91 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 2896 0.252103 TCTAGCCCAGGTCGTCCTTT 60.252 55.000 0.00 0.00 43.07 3.11
126 2951 2.159170 AGCTCCTTCGTACTCAATCAGC 60.159 50.000 0.00 0.00 0.00 4.26
161 6147 2.641305 GACTCCGAGGCAAGTCTAGTA 58.359 52.381 0.00 0.00 39.06 1.82
233 6221 3.210227 GACGGAGGGAGTAGTTAGTACC 58.790 54.545 0.00 0.00 31.06 3.34
298 6286 8.633724 ACTTCCTCAGTCCCATTATATAGGATA 58.366 37.037 0.00 0.00 32.21 2.59
299 6287 7.491681 ACTTCCTCAGTCCCATTATATAGGAT 58.508 38.462 0.00 0.00 32.21 3.24
303 6291 9.615660 AATGTACTTCCTCAGTCCCATTATATA 57.384 33.333 0.00 0.00 36.28 0.86
305 6293 7.931015 AATGTACTTCCTCAGTCCCATTATA 57.069 36.000 0.00 0.00 36.28 0.98
306 6294 6.831664 AATGTACTTCCTCAGTCCCATTAT 57.168 37.500 0.00 0.00 36.28 1.28
307 6295 6.214615 TGAAATGTACTTCCTCAGTCCCATTA 59.785 38.462 0.00 0.00 36.70 1.90
316 6304 9.958180 TCTTATTCATTGAAATGTACTTCCTCA 57.042 29.630 2.68 0.00 37.65 3.86
321 6309 9.793252 GCACATCTTATTCATTGAAATGTACTT 57.207 29.630 11.99 0.00 37.65 2.24
363 6351 8.454570 TGAAACGAAGGGAGTAGTTAAAATTT 57.545 30.769 0.00 0.00 0.00 1.82
365 6353 8.454570 TTTGAAACGAAGGGAGTAGTTAAAAT 57.545 30.769 0.00 0.00 0.00 1.82
373 6361 9.807649 GTACTATATTTTGAAACGAAGGGAGTA 57.192 33.333 0.00 0.00 0.00 2.59
374 6362 8.316214 TGTACTATATTTTGAAACGAAGGGAGT 58.684 33.333 0.00 0.00 0.00 3.85
375 6363 8.601476 GTGTACTATATTTTGAAACGAAGGGAG 58.399 37.037 0.00 0.00 0.00 4.30
376 6364 8.316214 AGTGTACTATATTTTGAAACGAAGGGA 58.684 33.333 0.00 0.00 0.00 4.20
377 6365 8.488651 AGTGTACTATATTTTGAAACGAAGGG 57.511 34.615 0.00 0.00 0.00 3.95
378 6366 8.318876 CGAGTGTACTATATTTTGAAACGAAGG 58.681 37.037 0.00 0.00 0.00 3.46
379 6367 7.839837 GCGAGTGTACTATATTTTGAAACGAAG 59.160 37.037 0.00 0.00 0.00 3.79
380 6368 7.461807 CGCGAGTGTACTATATTTTGAAACGAA 60.462 37.037 0.00 0.00 0.00 3.85
381 6369 6.021232 CGCGAGTGTACTATATTTTGAAACGA 60.021 38.462 0.00 0.00 0.00 3.85
382 6370 6.111696 CGCGAGTGTACTATATTTTGAAACG 58.888 40.000 0.00 0.00 0.00 3.60
383 6371 6.986118 ACGCGAGTGTACTATATTTTGAAAC 58.014 36.000 15.93 0.00 46.97 2.78
402 6390 2.798283 AGTTGAATCTCGAAAAACGCGA 59.202 40.909 15.93 0.00 42.26 5.87
403 6391 3.169207 AGTTGAATCTCGAAAAACGCG 57.831 42.857 3.53 3.53 42.26 6.01
404 6392 4.967575 TCAAAGTTGAATCTCGAAAAACGC 59.032 37.500 0.00 0.00 36.72 4.84
405 6393 5.395486 GGTCAAAGTTGAATCTCGAAAAACG 59.605 40.000 0.00 0.00 39.21 3.60
406 6394 6.262601 TGGTCAAAGTTGAATCTCGAAAAAC 58.737 36.000 0.00 0.00 39.21 2.43
407 6395 6.443934 TGGTCAAAGTTGAATCTCGAAAAA 57.556 33.333 0.00 0.00 39.21 1.94
408 6396 6.633500 ATGGTCAAAGTTGAATCTCGAAAA 57.367 33.333 0.00 0.00 39.21 2.29
409 6397 7.737972 TTATGGTCAAAGTTGAATCTCGAAA 57.262 32.000 0.00 0.00 39.21 3.46
410 6398 7.737972 TTTATGGTCAAAGTTGAATCTCGAA 57.262 32.000 0.00 0.00 39.21 3.71
411 6399 7.921786 ATTTATGGTCAAAGTTGAATCTCGA 57.078 32.000 0.00 0.00 39.21 4.04
421 6409 9.435688 GGAGCAAAAATTATTTATGGTCAAAGT 57.564 29.630 13.01 0.00 36.67 2.66
422 6410 8.594687 CGGAGCAAAAATTATTTATGGTCAAAG 58.405 33.333 13.01 5.09 36.67 2.77
423 6411 8.472683 CGGAGCAAAAATTATTTATGGTCAAA 57.527 30.769 13.01 0.00 36.67 2.69
450 6438 0.732880 AATCAACGAGACCGACTGCG 60.733 55.000 0.00 0.00 39.50 5.18
451 6439 2.273370 TAATCAACGAGACCGACTGC 57.727 50.000 0.00 0.00 39.50 4.40
452 6440 8.639428 CATATATTTAATCAACGAGACCGACTG 58.361 37.037 0.00 0.00 39.50 3.51
453 6441 7.813148 CCATATATTTAATCAACGAGACCGACT 59.187 37.037 0.00 0.00 39.50 4.18
454 6442 7.597743 ACCATATATTTAATCAACGAGACCGAC 59.402 37.037 0.00 0.00 39.50 4.79
455 6443 7.663827 ACCATATATTTAATCAACGAGACCGA 58.336 34.615 0.00 0.00 39.50 4.69
456 6444 7.597369 TGACCATATATTTAATCAACGAGACCG 59.403 37.037 0.00 0.00 42.50 4.79
457 6445 8.827177 TGACCATATATTTAATCAACGAGACC 57.173 34.615 0.00 0.00 0.00 3.85
462 6450 9.580916 CGACTTTGACCATATATTTAATCAACG 57.419 33.333 0.00 0.00 0.00 4.10
466 6454 9.813080 GCTTCGACTTTGACCATATATTTAATC 57.187 33.333 0.00 0.00 0.00 1.75
467 6455 9.337396 TGCTTCGACTTTGACCATATATTTAAT 57.663 29.630 0.00 0.00 0.00 1.40
468 6456 8.609176 GTGCTTCGACTTTGACCATATATTTAA 58.391 33.333 0.00 0.00 0.00 1.52
469 6457 7.766738 TGTGCTTCGACTTTGACCATATATTTA 59.233 33.333 0.00 0.00 0.00 1.40
470 6458 6.597672 TGTGCTTCGACTTTGACCATATATTT 59.402 34.615 0.00 0.00 0.00 1.40
471 6459 6.112734 TGTGCTTCGACTTTGACCATATATT 58.887 36.000 0.00 0.00 0.00 1.28
472 6460 5.670485 TGTGCTTCGACTTTGACCATATAT 58.330 37.500 0.00 0.00 0.00 0.86
473 6461 5.079689 TGTGCTTCGACTTTGACCATATA 57.920 39.130 0.00 0.00 0.00 0.86
474 6462 3.937814 TGTGCTTCGACTTTGACCATAT 58.062 40.909 0.00 0.00 0.00 1.78
475 6463 3.394674 TGTGCTTCGACTTTGACCATA 57.605 42.857 0.00 0.00 0.00 2.74
476 6464 2.254546 TGTGCTTCGACTTTGACCAT 57.745 45.000 0.00 0.00 0.00 3.55
477 6465 2.031258 TTGTGCTTCGACTTTGACCA 57.969 45.000 0.00 0.00 0.00 4.02
478 6466 3.414549 TTTTGTGCTTCGACTTTGACC 57.585 42.857 0.00 0.00 0.00 4.02
479 6467 3.546271 GGTTTTTGTGCTTCGACTTTGAC 59.454 43.478 0.00 0.00 0.00 3.18
480 6468 3.729462 CGGTTTTTGTGCTTCGACTTTGA 60.729 43.478 0.00 0.00 0.00 2.69
481 6469 2.529894 CGGTTTTTGTGCTTCGACTTTG 59.470 45.455 0.00 0.00 0.00 2.77
482 6470 2.420722 TCGGTTTTTGTGCTTCGACTTT 59.579 40.909 0.00 0.00 0.00 2.66
483 6471 2.011222 TCGGTTTTTGTGCTTCGACTT 58.989 42.857 0.00 0.00 0.00 3.01
484 6472 1.597663 CTCGGTTTTTGTGCTTCGACT 59.402 47.619 0.00 0.00 0.00 4.18
485 6473 1.333791 CCTCGGTTTTTGTGCTTCGAC 60.334 52.381 0.00 0.00 0.00 4.20
486 6474 0.941542 CCTCGGTTTTTGTGCTTCGA 59.058 50.000 0.00 0.00 0.00 3.71
487 6475 0.941542 TCCTCGGTTTTTGTGCTTCG 59.058 50.000 0.00 0.00 0.00 3.79
488 6476 1.333791 CGTCCTCGGTTTTTGTGCTTC 60.334 52.381 0.00 0.00 0.00 3.86
489 6477 0.661020 CGTCCTCGGTTTTTGTGCTT 59.339 50.000 0.00 0.00 0.00 3.91
490 6478 1.782028 GCGTCCTCGGTTTTTGTGCT 61.782 55.000 0.00 0.00 37.56 4.40
491 6479 1.370051 GCGTCCTCGGTTTTTGTGC 60.370 57.895 0.00 0.00 37.56 4.57
492 6480 1.083015 CGCGTCCTCGGTTTTTGTG 60.083 57.895 0.00 0.00 37.56 3.33
493 6481 1.091197 AACGCGTCCTCGGTTTTTGT 61.091 50.000 14.44 0.00 37.56 2.83
494 6482 0.860533 TAACGCGTCCTCGGTTTTTG 59.139 50.000 14.44 0.00 37.56 2.44
495 6483 1.799544 ATAACGCGTCCTCGGTTTTT 58.200 45.000 14.44 0.00 37.56 1.94
496 6484 2.652941 TATAACGCGTCCTCGGTTTT 57.347 45.000 14.44 0.00 37.56 2.43
497 6485 2.877043 ATATAACGCGTCCTCGGTTT 57.123 45.000 14.44 0.00 37.56 3.27
498 6486 2.877043 AATATAACGCGTCCTCGGTT 57.123 45.000 14.44 0.00 37.56 4.44
499 6487 2.877043 AAATATAACGCGTCCTCGGT 57.123 45.000 14.44 0.00 37.56 4.69
500 6488 3.240069 CCTAAATATAACGCGTCCTCGG 58.760 50.000 14.44 1.43 37.56 4.63
501 6489 3.058016 TCCCTAAATATAACGCGTCCTCG 60.058 47.826 14.44 0.00 40.37 4.63
502 6490 4.233005 GTCCCTAAATATAACGCGTCCTC 58.767 47.826 14.44 0.00 0.00 3.71
503 6491 3.304928 CGTCCCTAAATATAACGCGTCCT 60.305 47.826 14.44 5.33 0.00 3.85
504 6492 2.982470 CGTCCCTAAATATAACGCGTCC 59.018 50.000 14.44 0.00 0.00 4.79
505 6493 3.888934 TCGTCCCTAAATATAACGCGTC 58.111 45.455 14.44 0.00 33.58 5.19
506 6494 3.988379 TCGTCCCTAAATATAACGCGT 57.012 42.857 5.58 5.58 33.58 6.01
507 6495 3.671928 CCTTCGTCCCTAAATATAACGCG 59.328 47.826 3.53 3.53 33.58 6.01
508 6496 3.992427 CCCTTCGTCCCTAAATATAACGC 59.008 47.826 0.00 0.00 33.58 4.84
509 6497 5.010415 ACTCCCTTCGTCCCTAAATATAACG 59.990 44.000 0.00 0.00 34.80 3.18
510 6498 6.416631 ACTCCCTTCGTCCCTAAATATAAC 57.583 41.667 0.00 0.00 0.00 1.89
511 6499 7.951806 TGATACTCCCTTCGTCCCTAAATATAA 59.048 37.037 0.00 0.00 0.00 0.98
512 6500 7.472741 TGATACTCCCTTCGTCCCTAAATATA 58.527 38.462 0.00 0.00 0.00 0.86
513 6501 6.320518 TGATACTCCCTTCGTCCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
514 6502 5.708544 TGATACTCCCTTCGTCCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
515 6503 4.553678 TGATACTCCCTTCGTCCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
516 6504 3.985127 TGATACTCCCTTCGTCCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
517 6505 3.675348 TGATACTCCCTTCGTCCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
518 6506 3.897657 ATGATACTCCCTTCGTCCCTA 57.102 47.619 0.00 0.00 0.00 3.53
519 6507 2.777459 ATGATACTCCCTTCGTCCCT 57.223 50.000 0.00 0.00 0.00 4.20
520 6508 3.467803 CAAATGATACTCCCTTCGTCCC 58.532 50.000 0.00 0.00 0.00 4.46
521 6509 3.118371 ACCAAATGATACTCCCTTCGTCC 60.118 47.826 0.00 0.00 0.00 4.79
522 6510 4.120589 GACCAAATGATACTCCCTTCGTC 58.879 47.826 0.00 0.00 0.00 4.20
523 6511 3.517901 TGACCAAATGATACTCCCTTCGT 59.482 43.478 0.00 0.00 0.00 3.85
524 6512 4.137116 TGACCAAATGATACTCCCTTCG 57.863 45.455 0.00 0.00 0.00 3.79
525 6513 8.697507 ATTATTGACCAAATGATACTCCCTTC 57.302 34.615 0.00 0.00 0.00 3.46
590 6674 9.417561 ACCATGTCTTGATTCAATATTCAGAAT 57.582 29.630 0.20 0.20 37.19 2.40
591 6675 8.812513 ACCATGTCTTGATTCAATATTCAGAA 57.187 30.769 0.00 0.00 0.00 3.02
661 6746 1.252215 TTCGGTCATGGGTGTAGCGA 61.252 55.000 1.98 1.98 40.90 4.93
673 6758 4.966965 TGTTTTGCTAAGTTTTCGGTCA 57.033 36.364 0.00 0.00 0.00 4.02
693 6778 8.605746 TGCAAAGTTTCAGATTTTTCTGATTTG 58.394 29.630 17.81 17.81 45.03 2.32
706 6791 4.380531 AGTCGAATCTGCAAAGTTTCAGA 58.619 39.130 15.49 15.49 42.72 3.27
810 6895 1.079127 GGTGATGGTGAGACGGGTG 60.079 63.158 0.00 0.00 0.00 4.61
812 6897 0.253044 ATTGGTGATGGTGAGACGGG 59.747 55.000 0.00 0.00 0.00 5.28
814 6899 4.302455 GAGATATTGGTGATGGTGAGACG 58.698 47.826 0.00 0.00 0.00 4.18
816 6901 3.243873 GCGAGATATTGGTGATGGTGAGA 60.244 47.826 0.00 0.00 0.00 3.27
1070 7172 1.000163 GCACAGACACGAGGAAGAGAA 60.000 52.381 0.00 0.00 0.00 2.87
1176 7281 0.326618 GGGGGAGGGAACTGATGAGA 60.327 60.000 0.00 0.00 44.43 3.27
1265 7374 3.368116 CGAGGAGGATACAACGAGGTTTT 60.368 47.826 0.00 0.00 41.41 2.43
1377 7486 1.089920 GCACAAAGCCGATGTCAGAT 58.910 50.000 0.00 0.00 37.23 2.90
1394 7507 0.821517 CCAGTACTCACCGTATGGCA 59.178 55.000 0.00 0.00 39.70 4.92
1431 7544 1.073025 GAGCATGTGGGTGGTGACA 59.927 57.895 0.00 0.00 38.70 3.58
1477 9400 0.460311 AAATCAGTACCTCCTCCGCG 59.540 55.000 0.00 0.00 0.00 6.46
1630 9567 1.337917 GGACGGAGGGAGAAACAGTTC 60.338 57.143 0.00 0.00 0.00 3.01
1730 9681 6.623767 GCAGTTTCAGGTGGTATCATTTCTTC 60.624 42.308 0.00 0.00 0.00 2.87
1754 9705 4.095610 CCGTTGGATTCGTATTCAAAAGC 58.904 43.478 0.00 0.00 31.04 3.51
1830 9801 5.082251 ACTTTCTCGGTCCAGGTTAATAC 57.918 43.478 0.00 0.00 0.00 1.89
2038 10025 3.037549 TCCCCAAACAACTTGCTTTGAT 58.962 40.909 13.80 0.00 33.27 2.57
2118 10105 1.090833 ACTCCTACCCTACCCACTGT 58.909 55.000 0.00 0.00 0.00 3.55
2197 10184 1.405821 GATCGTCGATCACCTTGTCCT 59.594 52.381 26.51 0.00 38.77 3.85
2294 10281 5.209240 GCTCTCTTGTGAGATCATACGTAC 58.791 45.833 0.00 0.00 46.93 3.67
2295 10282 4.881850 TGCTCTCTTGTGAGATCATACGTA 59.118 41.667 0.00 0.00 46.93 3.57
2296 10283 3.696548 TGCTCTCTTGTGAGATCATACGT 59.303 43.478 0.00 0.00 46.93 3.57
2297 10284 4.041049 GTGCTCTCTTGTGAGATCATACG 58.959 47.826 0.00 0.00 46.93 3.06
2454 10445 2.027192 AGCCAAGGTAAATTCGAGAGCA 60.027 45.455 0.00 0.00 0.00 4.26
2457 10448 3.861840 CTCAGCCAAGGTAAATTCGAGA 58.138 45.455 0.00 0.00 0.00 4.04
2496 10488 6.299805 TCATCTTGTAGCTTCACCATAAGT 57.700 37.500 0.00 0.00 0.00 2.24
2499 10491 6.070824 TCACTTCATCTTGTAGCTTCACCATA 60.071 38.462 0.00 0.00 0.00 2.74
2534 10529 0.249398 AATTTCTCGTCCTCGGGGTG 59.751 55.000 0.00 0.00 38.21 4.61
2546 10541 8.879759 TCATGTCGGTTTCACTAATAATTTCTC 58.120 33.333 0.00 0.00 0.00 2.87
2556 10551 4.443621 TGTTGTTCATGTCGGTTTCACTA 58.556 39.130 0.00 0.00 0.00 2.74
2597 10592 1.571919 CCGGAGCGACTCTTTTATGG 58.428 55.000 0.00 0.00 0.00 2.74
2624 10619 0.612744 AGCAAGGAGAGGAGCAAGAC 59.387 55.000 0.00 0.00 0.00 3.01
2843 10839 1.760086 CATCCTCCGTCCTGCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
2887 10883 2.677836 GCCAACATAAGCTCGACATTCA 59.322 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.