Multiple sequence alignment - TraesCS3A01G060300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G060300 chr3A 100.000 3509 0 0 1 3509 36306131 36302623 0.000000e+00 6481.0
1 TraesCS3A01G060300 chr3A 86.174 311 37 5 3200 3505 36291777 36291468 7.260000e-87 331.0
2 TraesCS3A01G060300 chr3A 84.000 150 19 2 1751 1900 36298133 36297989 4.720000e-29 139.0
3 TraesCS3A01G060300 chr3A 73.333 330 60 21 1529 1843 36288161 36287845 2.880000e-16 97.1
4 TraesCS3A01G060300 chr3D 82.885 1040 104 40 856 1835 26306296 26305271 0.000000e+00 867.0
5 TraesCS3A01G060300 chr3D 96.865 319 4 1 3191 3509 26303542 26303230 2.400000e-146 529.0
6 TraesCS3A01G060300 chr3D 84.052 464 51 17 2744 3193 26304112 26303658 3.240000e-115 425.0
7 TraesCS3A01G060300 chr3D 82.851 484 59 14 2715 3194 26227912 26228375 2.520000e-111 412.0
8 TraesCS3A01G060300 chr3D 90.000 270 24 3 3237 3505 26215717 26215984 2.590000e-91 346.0
9 TraesCS3A01G060300 chr3D 86.262 313 38 4 3200 3509 26219820 26220130 5.610000e-88 335.0
10 TraesCS3A01G060300 chr3D 93.377 151 9 1 1997 2146 26305042 26304892 4.560000e-54 222.0
11 TraesCS3A01G060300 chr3D 81.298 262 46 3 2934 3194 26293857 26293598 3.550000e-50 209.0
12 TraesCS3A01G060300 chr3D 74.462 325 46 26 1744 2064 26268514 26268223 4.790000e-19 106.0
13 TraesCS3A01G060300 chr3D 91.026 78 6 1 2001 2077 26285746 26285669 1.720000e-18 104.0
14 TraesCS3A01G060300 chr3D 86.667 75 9 1 2002 2075 26294309 26294235 8.070000e-12 82.4
15 TraesCS3A01G060300 chr3B 81.220 1033 103 47 856 1835 43940054 43939060 0.000000e+00 749.0
16 TraesCS3A01G060300 chr3B 81.220 1033 103 47 856 1835 44045534 44044540 0.000000e+00 749.0
17 TraesCS3A01G060300 chr3B 89.575 518 45 8 1 513 764480071 764480584 0.000000e+00 649.0
18 TraesCS3A01G060300 chr3B 88.679 477 35 8 976 1438 607415416 607414945 6.580000e-157 564.0
19 TraesCS3A01G060300 chr3B 87.500 312 32 5 3200 3505 43833043 43832733 1.550000e-93 353.0
20 TraesCS3A01G060300 chr3B 85.429 350 35 7 1526 1861 801045042 801044695 2.000000e-92 350.0
21 TraesCS3A01G060300 chr3B 86.495 311 34 8 3200 3505 43837997 43837690 5.610000e-88 335.0
22 TraesCS3A01G060300 chr3B 93.269 208 10 2 2892 3099 43937749 43937546 1.580000e-78 303.0
23 TraesCS3A01G060300 chr3B 93.269 208 10 2 2892 3099 44043229 44043026 1.580000e-78 303.0
24 TraesCS3A01G060300 chr3B 84.615 299 20 8 1117 1389 801052988 801052690 1.240000e-69 274.0
25 TraesCS3A01G060300 chr3B 95.349 172 7 1 1490 1661 607414937 607414767 4.460000e-69 272.0
26 TraesCS3A01G060300 chr3B 92.715 151 10 1 1997 2146 43938834 43938684 2.120000e-52 217.0
27 TraesCS3A01G060300 chr3B 92.715 151 10 1 1997 2146 44044314 44044164 2.120000e-52 217.0
28 TraesCS3A01G060300 chr3B 88.000 75 8 1 2002 2075 43852545 43852471 1.740000e-13 87.9
29 TraesCS3A01G060300 chr7B 89.768 518 45 7 1 513 407606915 407606401 0.000000e+00 656.0
30 TraesCS3A01G060300 chr7B 87.091 519 58 8 1 513 637645869 637646384 2.350000e-161 579.0
31 TraesCS3A01G060300 chr7B 91.167 317 25 2 432 745 637646377 637646693 9.000000e-116 427.0
32 TraesCS3A01G060300 chr4B 89.163 526 45 11 1 519 74358259 74358779 0.000000e+00 645.0
33 TraesCS3A01G060300 chr4B 87.332 521 53 10 1 513 7164128 7164643 5.050000e-163 584.0
34 TraesCS3A01G060300 chr4B 88.858 359 35 3 389 743 7261677 7262034 1.500000e-118 436.0
35 TraesCS3A01G060300 chr4B 88.056 360 37 3 389 743 7211553 7211911 4.190000e-114 422.0
36 TraesCS3A01G060300 chr4B 87.778 360 37 4 389 743 7164591 7164948 7.010000e-112 414.0
37 TraesCS3A01G060300 chr4B 87.500 360 39 3 389 743 7302853 7303211 9.070000e-111 411.0
38 TraesCS3A01G060300 chr4B 87.187 359 41 3 389 743 7352123 7352480 1.520000e-108 403.0
39 TraesCS3A01G060300 chr4B 87.032 347 28 5 389 728 74358720 74359056 3.310000e-100 375.0
40 TraesCS3A01G060300 chr6D 88.417 518 52 7 1 513 37666154 37666668 4.980000e-173 617.0
41 TraesCS3A01G060300 chr4A 88.462 520 46 11 1 513 709211239 709211751 1.790000e-172 616.0
42 TraesCS3A01G060300 chr4A 85.256 312 41 5 3200 3507 603383303 603383613 2.030000e-82 316.0
43 TraesCS3A01G060300 chr5A 87.908 521 53 9 1 514 523017336 523017853 3.870000e-169 604.0
44 TraesCS3A01G060300 chr5A 87.597 516 56 7 1 511 37635489 37634977 3.020000e-165 592.0
45 TraesCS3A01G060300 chr5A 89.130 368 34 4 389 751 523017800 523018166 1.490000e-123 453.0
46 TraesCS3A01G060300 chr5A 91.358 324 25 1 389 709 37635065 37634742 1.160000e-119 440.0
47 TraesCS3A01G060300 chr5A 86.429 280 35 2 3225 3502 650282243 650281965 1.580000e-78 303.0
48 TraesCS3A01G060300 chr4D 84.345 313 43 6 3200 3507 1400877 1400566 5.690000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G060300 chr3A 36302623 36306131 3508 True 6481.00 6481 100.00000 1 3509 1 chr3A.!!$R2 3508
1 TraesCS3A01G060300 chr3A 36287845 36291777 3932 True 214.05 331 79.75350 1529 3505 2 chr3A.!!$R3 1976
2 TraesCS3A01G060300 chr3D 26303230 26306296 3066 True 510.75 867 89.29475 856 3509 4 chr3D.!!$R4 2653
3 TraesCS3A01G060300 chr3D 26215717 26220130 4413 False 340.50 346 88.13100 3200 3509 2 chr3D.!!$F2 309
4 TraesCS3A01G060300 chr3B 764480071 764480584 513 False 649.00 649 89.57500 1 513 1 chr3B.!!$F1 512
5 TraesCS3A01G060300 chr3B 43937546 43940054 2508 True 423.00 749 89.06800 856 3099 3 chr3B.!!$R6 2243
6 TraesCS3A01G060300 chr3B 44043026 44045534 2508 True 423.00 749 89.06800 856 3099 3 chr3B.!!$R7 2243
7 TraesCS3A01G060300 chr3B 607414767 607415416 649 True 418.00 564 92.01400 976 1661 2 chr3B.!!$R8 685
8 TraesCS3A01G060300 chr7B 407606401 407606915 514 True 656.00 656 89.76800 1 513 1 chr7B.!!$R1 512
9 TraesCS3A01G060300 chr7B 637645869 637646693 824 False 503.00 579 89.12900 1 745 2 chr7B.!!$F1 744
10 TraesCS3A01G060300 chr4B 74358259 74359056 797 False 510.00 645 88.09750 1 728 2 chr4B.!!$F6 727
11 TraesCS3A01G060300 chr4B 7164128 7164948 820 False 499.00 584 87.55500 1 743 2 chr4B.!!$F5 742
12 TraesCS3A01G060300 chr6D 37666154 37666668 514 False 617.00 617 88.41700 1 513 1 chr6D.!!$F1 512
13 TraesCS3A01G060300 chr4A 709211239 709211751 512 False 616.00 616 88.46200 1 513 1 chr4A.!!$F2 512
14 TraesCS3A01G060300 chr5A 523017336 523018166 830 False 528.50 604 88.51900 1 751 2 chr5A.!!$F1 750
15 TraesCS3A01G060300 chr5A 37634742 37635489 747 True 516.00 592 89.47750 1 709 2 chr5A.!!$R2 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 1022 0.249405 AAGCAAACATGGTGGCAACG 60.249 50.0 13.89 0.0 42.51 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2680 5072 0.10576 TTCCCAAACACACCTGGCAT 60.106 50.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
713 820 0.883370 GAGTGACCGGCCGAACTTTT 60.883 55.000 30.73 7.28 0.00 2.27
747 854 1.337447 GCGCCTATCGTTGCCCTATTA 60.337 52.381 0.00 0.00 41.07 0.98
750 857 4.751060 CGCCTATCGTTGCCCTATTATTA 58.249 43.478 0.00 0.00 0.00 0.98
751 858 5.357257 CGCCTATCGTTGCCCTATTATTAT 58.643 41.667 0.00 0.00 0.00 1.28
753 860 6.018994 CGCCTATCGTTGCCCTATTATTATTC 60.019 42.308 0.00 0.00 0.00 1.75
754 861 6.821665 GCCTATCGTTGCCCTATTATTATTCA 59.178 38.462 0.00 0.00 0.00 2.57
759 866 8.246908 TCGTTGCCCTATTATTATTCAATACG 57.753 34.615 0.00 0.00 0.00 3.06
760 867 7.874016 TCGTTGCCCTATTATTATTCAATACGT 59.126 33.333 0.00 0.00 0.00 3.57
761 868 9.142515 CGTTGCCCTATTATTATTCAATACGTA 57.857 33.333 0.00 0.00 0.00 3.57
777 884 8.487313 TCAATACGTATGTGCTAAAAGAACAT 57.513 30.769 9.24 5.85 46.08 2.71
778 885 8.941977 TCAATACGTATGTGCTAAAAGAACATT 58.058 29.630 9.24 0.00 41.71 2.71
779 886 9.554724 CAATACGTATGTGCTAAAAGAACATTT 57.445 29.630 9.24 0.00 41.71 2.32
814 921 6.959639 AAAAATGCTTCTGAGGTTCAGTAA 57.040 33.333 6.03 0.10 44.58 2.24
815 922 7.530426 AAAAATGCTTCTGAGGTTCAGTAAT 57.470 32.000 6.03 0.00 44.58 1.89
816 923 6.506500 AAATGCTTCTGAGGTTCAGTAATG 57.493 37.500 6.03 0.00 44.58 1.90
817 924 4.890158 TGCTTCTGAGGTTCAGTAATGA 57.110 40.909 6.03 0.00 44.58 2.57
819 926 4.284490 TGCTTCTGAGGTTCAGTAATGAGT 59.716 41.667 6.03 0.00 44.58 3.41
821 928 4.808414 TCTGAGGTTCAGTAATGAGTGG 57.192 45.455 6.03 0.00 44.58 4.00
823 930 4.464244 TCTGAGGTTCAGTAATGAGTGGAG 59.536 45.833 6.03 0.00 44.58 3.86
826 933 4.160329 AGGTTCAGTAATGAGTGGAGTCA 58.840 43.478 0.00 0.00 0.00 3.41
828 935 5.105146 AGGTTCAGTAATGAGTGGAGTCATC 60.105 44.000 0.00 0.00 36.07 2.92
829 936 5.112686 GTTCAGTAATGAGTGGAGTCATCC 58.887 45.833 0.00 0.00 46.87 3.51
841 948 2.874701 GGAGTCATCCATCGACATTTGG 59.125 50.000 0.00 0.00 45.87 3.28
842 949 3.432186 GGAGTCATCCATCGACATTTGGA 60.432 47.826 7.89 7.89 45.87 3.53
843 950 4.191544 GAGTCATCCATCGACATTTGGAA 58.808 43.478 9.44 0.00 44.83 3.53
845 952 4.637534 AGTCATCCATCGACATTTGGAAAG 59.362 41.667 9.44 6.04 44.83 2.62
846 953 4.635765 GTCATCCATCGACATTTGGAAAGA 59.364 41.667 9.44 8.04 44.83 2.52
851 958 5.767665 TCCATCGACATTTGGAAAGAAAGAA 59.232 36.000 2.94 0.00 39.05 2.52
852 959 6.434028 TCCATCGACATTTGGAAAGAAAGAAT 59.566 34.615 2.94 0.00 39.05 2.40
854 961 7.698130 CCATCGACATTTGGAAAGAAAGAATAC 59.302 37.037 0.00 0.00 34.81 1.89
915 1022 0.249405 AAGCAAACATGGTGGCAACG 60.249 50.000 13.89 0.00 42.51 4.10
920 1027 1.167851 AACATGGTGGCAACGAGATG 58.832 50.000 0.00 0.00 42.51 2.90
1026 1140 3.531207 TCCATCCTCGGCGCTCTG 61.531 66.667 7.64 0.00 0.00 3.35
1043 1157 3.717294 GAAGCTCGCCCCTTCCCA 61.717 66.667 0.00 0.00 34.12 4.37
1184 1298 4.174762 CTCGCTTTCAGGGTTAGTTCTAC 58.825 47.826 0.00 0.00 0.00 2.59
1193 1313 6.403878 TCAGGGTTAGTTCTACTGTATTTGC 58.596 40.000 0.00 0.00 0.00 3.68
1458 1608 3.478509 ACGGAGTACATAGTAGGCTCTG 58.521 50.000 0.00 0.00 41.94 3.35
1459 1609 3.136077 ACGGAGTACATAGTAGGCTCTGA 59.864 47.826 0.00 0.00 41.94 3.27
1461 1611 3.822167 GGAGTACATAGTAGGCTCTGACC 59.178 52.174 0.00 0.00 0.00 4.02
1655 3752 4.505922 CCTACTGATTCGCATCTGTTCTTC 59.494 45.833 12.26 0.00 40.85 2.87
1666 3763 2.808919 TCTGTTCTTCATCTCCTCGGT 58.191 47.619 0.00 0.00 0.00 4.69
1667 3764 2.493675 TCTGTTCTTCATCTCCTCGGTG 59.506 50.000 0.00 0.00 0.00 4.94
1674 3778 0.176680 CATCTCCTCGGTGGTTCCAG 59.823 60.000 0.00 0.00 37.07 3.86
1697 3804 3.493350 CCAGCAGACAGACACTAGTTGTT 60.493 47.826 0.00 0.00 39.17 2.83
1698 3805 3.492383 CAGCAGACAGACACTAGTTGTTG 59.508 47.826 0.00 0.00 39.17 3.33
1712 3828 4.946784 AGTTGTTGTCTGTCAAGTGTTC 57.053 40.909 0.00 0.00 36.66 3.18
1717 3833 4.154015 TGTTGTCTGTCAAGTGTTCAGTTG 59.846 41.667 12.51 12.51 36.66 3.16
1721 3837 3.932710 TCTGTCAAGTGTTCAGTTGTGAC 59.067 43.478 16.59 11.07 36.71 3.67
1722 3838 3.669536 TGTCAAGTGTTCAGTTGTGACA 58.330 40.909 16.59 12.99 42.14 3.58
1727 3843 6.033831 GTCAAGTGTTCAGTTGTGACAAAATG 59.966 38.462 16.59 2.37 36.30 2.32
1729 3845 4.111916 GTGTTCAGTTGTGACAAAATGGG 58.888 43.478 0.00 0.00 30.10 4.00
1730 3846 3.766591 TGTTCAGTTGTGACAAAATGGGT 59.233 39.130 0.00 0.00 30.10 4.51
1731 3847 4.111916 GTTCAGTTGTGACAAAATGGGTG 58.888 43.478 0.00 0.00 30.10 4.61
1734 3850 5.380900 TCAGTTGTGACAAAATGGGTGATA 58.619 37.500 0.00 0.00 0.00 2.15
1737 3853 7.667635 TCAGTTGTGACAAAATGGGTGATATTA 59.332 33.333 0.00 0.00 0.00 0.98
1738 3854 8.469200 CAGTTGTGACAAAATGGGTGATATTAT 58.531 33.333 0.00 0.00 0.00 1.28
1739 3855 9.034800 AGTTGTGACAAAATGGGTGATATTATT 57.965 29.630 0.00 0.00 0.00 1.40
1781 3897 3.773667 TGAATTCAGGTGCTGATCTCTCT 59.226 43.478 3.38 0.00 40.39 3.10
1784 3900 3.029483 TCAGGTGCTGATCTCTCTGAT 57.971 47.619 0.00 0.00 35.39 2.90
1790 3906 2.966516 TGCTGATCTCTCTGATGCTGAT 59.033 45.455 0.00 0.00 35.14 2.90
1823 3942 1.537202 GACTTCTCGCTGGCAAATGTT 59.463 47.619 0.00 0.00 0.00 2.71
1835 3954 5.189659 TGGCAAATGTTACAAAGGTACAC 57.810 39.130 0.00 0.00 0.00 2.90
1850 3969 4.506886 GGTACACCAGTAGCAGCTATAG 57.493 50.000 5.14 1.25 45.64 1.31
1852 3971 4.023021 GGTACACCAGTAGCAGCTATAGAC 60.023 50.000 5.14 0.00 45.64 2.59
1853 3972 3.632333 ACACCAGTAGCAGCTATAGACA 58.368 45.455 5.14 0.00 0.00 3.41
1854 3973 3.634448 ACACCAGTAGCAGCTATAGACAG 59.366 47.826 5.14 0.00 0.00 3.51
1856 3975 4.822350 CACCAGTAGCAGCTATAGACAGTA 59.178 45.833 5.14 0.00 0.00 2.74
1857 3976 5.049060 CACCAGTAGCAGCTATAGACAGTAG 60.049 48.000 5.14 0.00 0.00 2.57
1858 3977 5.163184 ACCAGTAGCAGCTATAGACAGTAGA 60.163 44.000 5.14 0.00 0.00 2.59
1859 3978 5.180492 CCAGTAGCAGCTATAGACAGTAGAC 59.820 48.000 5.14 0.00 0.00 2.59
1860 3979 5.760743 CAGTAGCAGCTATAGACAGTAGACA 59.239 44.000 5.14 0.00 0.00 3.41
1861 3980 5.995282 AGTAGCAGCTATAGACAGTAGACAG 59.005 44.000 5.14 0.00 0.00 3.51
1862 3981 3.568007 AGCAGCTATAGACAGTAGACAGC 59.432 47.826 3.21 0.00 0.00 4.40
1863 3982 3.316588 GCAGCTATAGACAGTAGACAGCA 59.683 47.826 3.21 0.00 0.00 4.41
1864 3983 4.202060 GCAGCTATAGACAGTAGACAGCAA 60.202 45.833 3.21 0.00 0.00 3.91
1867 3986 4.742659 GCTATAGACAGTAGACAGCAAAGC 59.257 45.833 3.21 0.00 0.00 3.51
1868 3987 4.808414 ATAGACAGTAGACAGCAAAGCA 57.192 40.909 0.00 0.00 0.00 3.91
1869 3988 3.692257 AGACAGTAGACAGCAAAGCAT 57.308 42.857 0.00 0.00 0.00 3.79
1870 3989 4.808414 AGACAGTAGACAGCAAAGCATA 57.192 40.909 0.00 0.00 0.00 3.14
1873 3992 5.089970 ACAGTAGACAGCAAAGCATATCA 57.910 39.130 0.00 0.00 0.00 2.15
1875 3994 5.526479 ACAGTAGACAGCAAAGCATATCATG 59.474 40.000 0.00 0.00 0.00 3.07
1876 3995 5.756833 CAGTAGACAGCAAAGCATATCATGA 59.243 40.000 0.00 0.00 0.00 3.07
1877 3996 6.427242 CAGTAGACAGCAAAGCATATCATGAT 59.573 38.462 13.81 13.81 0.00 2.45
1878 3997 6.996879 AGTAGACAGCAAAGCATATCATGATT 59.003 34.615 14.65 0.00 41.23 2.57
1879 3998 6.073327 AGACAGCAAAGCATATCATGATTG 57.927 37.500 14.65 12.57 38.02 2.67
1880 3999 5.593095 AGACAGCAAAGCATATCATGATTGT 59.407 36.000 14.65 8.51 38.02 2.71
1891 4010 6.183360 GCATATCATGATTGTTTGGGTTCAGA 60.183 38.462 14.65 0.00 0.00 3.27
1925 4044 6.336842 ACATAGCTGTTCTGAATTTTGCTT 57.663 33.333 0.00 2.62 28.70 3.91
1930 4049 6.285990 AGCTGTTCTGAATTTTGCTTGAAAT 58.714 32.000 0.00 0.00 0.00 2.17
1931 4050 6.423001 AGCTGTTCTGAATTTTGCTTGAAATC 59.577 34.615 0.00 0.00 0.00 2.17
1934 4053 6.198778 TGTTCTGAATTTTGCTTGAAATCGTG 59.801 34.615 0.00 0.00 0.00 4.35
1937 4056 6.855914 TCTGAATTTTGCTTGAAATCGTGTAC 59.144 34.615 0.00 0.00 0.00 2.90
1959 4078 1.805945 GTCGAGTGGTCACCGCATC 60.806 63.158 10.81 3.55 36.32 3.91
1961 4080 1.807165 CGAGTGGTCACCGCATCTG 60.807 63.158 10.81 0.00 36.32 2.90
1963 4082 0.176680 GAGTGGTCACCGCATCTGAT 59.823 55.000 10.81 0.00 36.32 2.90
1964 4083 0.176680 AGTGGTCACCGCATCTGATC 59.823 55.000 10.81 0.00 36.32 2.92
1965 4084 1.141665 TGGTCACCGCATCTGATCG 59.858 57.895 0.00 0.00 0.00 3.69
1966 4085 1.141881 GGTCACCGCATCTGATCGT 59.858 57.895 8.09 0.00 0.00 3.73
1967 4086 0.872021 GGTCACCGCATCTGATCGTC 60.872 60.000 8.09 0.00 0.00 4.20
1988 4186 3.126831 CAGAGCATCGGACTATGGTTTC 58.873 50.000 0.00 0.00 42.67 2.78
1994 4192 1.621317 TCGGACTATGGTTTCACAGCA 59.379 47.619 0.00 0.00 37.28 4.41
1999 4197 4.095483 GGACTATGGTTTCACAGCAATCTG 59.905 45.833 0.00 0.00 45.71 2.90
2002 4200 2.665165 TGGTTTCACAGCAATCTGGTT 58.335 42.857 0.00 0.00 44.54 3.67
2021 4237 5.782047 TGGTTCATTCTGCAGGTAAATTTG 58.218 37.500 15.13 0.00 0.00 2.32
2106 4322 2.048603 GGGGCAGGCAAGTGCTAAG 61.049 63.158 2.85 0.00 43.45 2.18
2130 4346 5.409826 GTGTTTATCTCCAAGTTCTGTCTGG 59.590 44.000 0.00 0.00 0.00 3.86
2133 4349 6.627087 TTATCTCCAAGTTCTGTCTGGAAT 57.373 37.500 0.00 0.00 0.00 3.01
2134 4350 4.543590 TCTCCAAGTTCTGTCTGGAATC 57.456 45.455 0.00 0.00 0.00 2.52
2135 4351 4.163427 TCTCCAAGTTCTGTCTGGAATCT 58.837 43.478 0.00 0.00 0.00 2.40
2136 4352 4.594920 TCTCCAAGTTCTGTCTGGAATCTT 59.405 41.667 0.00 0.00 0.00 2.40
2137 4353 5.780282 TCTCCAAGTTCTGTCTGGAATCTTA 59.220 40.000 0.00 0.00 0.00 2.10
2138 4354 6.270000 TCTCCAAGTTCTGTCTGGAATCTTAA 59.730 38.462 0.00 0.00 0.00 1.85
2139 4355 6.231211 TCCAAGTTCTGTCTGGAATCTTAAC 58.769 40.000 0.00 0.00 0.00 2.01
2140 4356 5.997746 CCAAGTTCTGTCTGGAATCTTAACA 59.002 40.000 0.00 0.00 0.00 2.41
2141 4357 6.656693 CCAAGTTCTGTCTGGAATCTTAACAT 59.343 38.462 0.00 0.00 0.00 2.71
2142 4358 7.824289 CCAAGTTCTGTCTGGAATCTTAACATA 59.176 37.037 0.00 0.00 0.00 2.29
2143 4359 9.388506 CAAGTTCTGTCTGGAATCTTAACATAT 57.611 33.333 0.00 0.00 0.00 1.78
2144 4360 9.965902 AAGTTCTGTCTGGAATCTTAACATATT 57.034 29.630 0.00 0.00 0.00 1.28
2145 4361 9.965902 AGTTCTGTCTGGAATCTTAACATATTT 57.034 29.630 0.00 0.00 0.00 1.40
2205 4421 3.333029 TCACCATGTGATCAATGTCGT 57.667 42.857 0.00 0.00 37.67 4.34
2207 4423 4.180817 TCACCATGTGATCAATGTCGTAC 58.819 43.478 0.00 0.00 37.67 3.67
2210 4426 4.081697 ACCATGTGATCAATGTCGTACTGA 60.082 41.667 0.00 0.00 0.00 3.41
2211 4427 4.869861 CCATGTGATCAATGTCGTACTGAA 59.130 41.667 0.00 0.00 0.00 3.02
2214 4430 7.414429 CCATGTGATCAATGTCGTACTGAAATT 60.414 37.037 0.00 0.00 34.71 1.82
2220 4436 9.855361 GATCAATGTCGTACTGAAATTATCTTG 57.145 33.333 3.75 0.00 32.50 3.02
2221 4437 7.684670 TCAATGTCGTACTGAAATTATCTTGC 58.315 34.615 3.75 0.00 32.50 4.01
2224 4576 6.163476 TGTCGTACTGAAATTATCTTGCTGT 58.837 36.000 0.00 0.00 0.00 4.40
2226 4578 7.274904 TGTCGTACTGAAATTATCTTGCTGTAC 59.725 37.037 0.00 0.00 0.00 2.90
2228 4582 7.488150 TCGTACTGAAATTATCTTGCTGTACTG 59.512 37.037 0.00 0.00 0.00 2.74
2268 4622 3.764434 GGTTTCCCCATTTTTCTCTCCTC 59.236 47.826 0.00 0.00 0.00 3.71
2270 4624 4.576330 TTCCCCATTTTTCTCTCCTCTC 57.424 45.455 0.00 0.00 0.00 3.20
2278 4632 6.318396 CCATTTTTCTCTCCTCTCCAGATTTC 59.682 42.308 0.00 0.00 0.00 2.17
2281 4635 3.020274 TCTCTCCTCTCCAGATTTCACG 58.980 50.000 0.00 0.00 0.00 4.35
2302 4656 2.358267 GGATGTTCCACTACGAGACGAT 59.642 50.000 0.00 0.00 36.28 3.73
2305 4659 2.418976 TGTTCCACTACGAGACGATCAG 59.581 50.000 0.00 0.00 0.00 2.90
2306 4660 2.676839 GTTCCACTACGAGACGATCAGA 59.323 50.000 0.00 0.00 0.00 3.27
2341 4695 2.270352 AAATTGCTGACGGGTGAGAA 57.730 45.000 0.00 0.00 0.00 2.87
2346 4700 1.140052 TGCTGACGGGTGAGAAGAAAA 59.860 47.619 0.00 0.00 0.00 2.29
2347 4701 2.218603 GCTGACGGGTGAGAAGAAAAA 58.781 47.619 0.00 0.00 0.00 1.94
2370 4727 6.515272 AAAAATGTCGATATGCAGGAACTT 57.485 33.333 0.00 0.00 34.60 2.66
2371 4728 5.490139 AAATGTCGATATGCAGGAACTTG 57.510 39.130 0.00 0.00 34.60 3.16
2372 4729 2.279741 TGTCGATATGCAGGAACTTGC 58.720 47.619 2.02 2.02 34.60 4.01
2381 4738 1.135721 GCAGGAACTTGCCATCCATTC 59.864 52.381 0.00 0.00 34.60 2.67
2382 4739 2.731572 CAGGAACTTGCCATCCATTCT 58.268 47.619 0.00 0.00 34.60 2.40
2383 4740 2.686915 CAGGAACTTGCCATCCATTCTC 59.313 50.000 0.00 0.00 34.60 2.87
2385 4742 3.011032 AGGAACTTGCCATCCATTCTCTT 59.989 43.478 0.00 0.00 38.23 2.85
2386 4743 4.228210 AGGAACTTGCCATCCATTCTCTTA 59.772 41.667 0.00 0.00 38.23 2.10
2387 4744 4.949856 GGAACTTGCCATCCATTCTCTTAA 59.050 41.667 0.00 0.00 35.71 1.85
2392 4749 5.901413 TGCCATCCATTCTCTTAATCTCT 57.099 39.130 0.00 0.00 0.00 3.10
2395 4752 6.769822 TGCCATCCATTCTCTTAATCTCTTTC 59.230 38.462 0.00 0.00 0.00 2.62
2401 4758 8.428063 TCCATTCTCTTAATCTCTTTCTCCATC 58.572 37.037 0.00 0.00 0.00 3.51
2403 4760 9.263538 CATTCTCTTAATCTCTTTCTCCATCTG 57.736 37.037 0.00 0.00 0.00 2.90
2405 4762 6.382282 TCTCTTAATCTCTTTCTCCATCTGCA 59.618 38.462 0.00 0.00 0.00 4.41
2406 4763 7.070946 TCTCTTAATCTCTTTCTCCATCTGCAT 59.929 37.037 0.00 0.00 0.00 3.96
2409 4766 6.696441 AATCTCTTTCTCCATCTGCATTTC 57.304 37.500 0.00 0.00 0.00 2.17
2413 4770 6.053632 TCTTTCTCCATCTGCATTTCTGTA 57.946 37.500 0.00 0.00 0.00 2.74
2416 4773 5.619132 TCTCCATCTGCATTTCTGTATGA 57.381 39.130 0.00 0.00 0.00 2.15
2417 4774 6.183810 TCTCCATCTGCATTTCTGTATGAT 57.816 37.500 0.00 0.00 0.00 2.45
2418 4775 5.995897 TCTCCATCTGCATTTCTGTATGATG 59.004 40.000 0.00 0.00 0.00 3.07
2419 4776 5.932455 TCCATCTGCATTTCTGTATGATGA 58.068 37.500 8.01 0.00 31.13 2.92
2420 4777 5.761726 TCCATCTGCATTTCTGTATGATGAC 59.238 40.000 8.01 0.00 31.13 3.06
2431 4798 8.722480 TTTCTGTATGATGACATGGTTCTTAG 57.278 34.615 0.00 0.00 37.87 2.18
2432 4799 6.283694 TCTGTATGATGACATGGTTCTTAGC 58.716 40.000 0.00 0.00 37.87 3.09
2433 4800 5.049828 TGTATGATGACATGGTTCTTAGCG 58.950 41.667 0.00 0.00 37.87 4.26
2443 4811 3.896122 TGGTTCTTAGCGATTTTGCAAC 58.104 40.909 0.00 0.00 37.31 4.17
2446 4814 4.537015 GTTCTTAGCGATTTTGCAACTGT 58.463 39.130 0.00 0.00 37.31 3.55
2466 4834 2.102070 TGTGCACCAGGGTAAATACG 57.898 50.000 15.69 0.00 0.00 3.06
2475 4843 2.951642 CAGGGTAAATACGACTACCGGA 59.048 50.000 9.46 0.00 43.93 5.14
2478 4846 4.651045 AGGGTAAATACGACTACCGGAAAT 59.349 41.667 9.46 0.00 43.93 2.17
2481 4849 2.521105 ATACGACTACCGGAAATGCC 57.479 50.000 9.46 0.00 43.93 4.40
2484 4852 0.390603 CGACTACCGGAAATGCCACA 60.391 55.000 9.46 0.00 35.94 4.17
2496 4864 3.515602 AATGCCACAAAGGAGACTCTT 57.484 42.857 1.74 0.00 42.68 2.85
2509 4877 7.823745 AAGGAGACTCTTTTCTGCAAATAAA 57.176 32.000 1.74 0.00 42.68 1.40
2510 4878 8.414629 AAGGAGACTCTTTTCTGCAAATAAAT 57.585 30.769 1.74 0.00 42.68 1.40
2511 4879 7.824672 AGGAGACTCTTTTCTGCAAATAAATG 58.175 34.615 1.74 0.00 36.45 2.32
2512 4880 7.449704 AGGAGACTCTTTTCTGCAAATAAATGT 59.550 33.333 1.74 0.00 36.45 2.71
2513 4881 8.730680 GGAGACTCTTTTCTGCAAATAAATGTA 58.269 33.333 1.74 0.00 34.24 2.29
2514 4882 9.548208 GAGACTCTTTTCTGCAAATAAATGTAC 57.452 33.333 0.00 0.00 0.00 2.90
2515 4883 9.066892 AGACTCTTTTCTGCAAATAAATGTACA 57.933 29.630 0.00 0.00 0.00 2.90
2517 4885 9.683069 ACTCTTTTCTGCAAATAAATGTACAAG 57.317 29.630 0.00 0.00 0.00 3.16
2518 4886 9.132521 CTCTTTTCTGCAAATAAATGTACAAGG 57.867 33.333 0.00 0.00 0.00 3.61
2519 4887 8.087750 TCTTTTCTGCAAATAAATGTACAAGGG 58.912 33.333 0.00 0.00 0.00 3.95
2525 4893 6.491745 TGCAAATAAATGTACAAGGGTGAAGA 59.508 34.615 0.00 0.00 0.00 2.87
2532 4900 5.560722 TGTACAAGGGTGAAGAAGAATGA 57.439 39.130 0.00 0.00 0.00 2.57
2533 4901 5.935945 TGTACAAGGGTGAAGAAGAATGAA 58.064 37.500 0.00 0.00 0.00 2.57
2541 4909 6.498651 AGGGTGAAGAAGAATGAAGAGACTAA 59.501 38.462 0.00 0.00 0.00 2.24
2545 4913 9.139174 GTGAAGAAGAATGAAGAGACTAAAGAG 57.861 37.037 0.00 0.00 0.00 2.85
2549 4917 8.026607 AGAAGAATGAAGAGACTAAAGAGTTCG 58.973 37.037 0.00 0.00 35.45 3.95
2554 4922 2.756207 AGAGACTAAAGAGTTCGGAGGC 59.244 50.000 0.00 0.00 35.45 4.70
2567 4935 4.020128 AGTTCGGAGGCTGATTTAGTTCTT 60.020 41.667 0.00 0.00 0.00 2.52
2577 4945 7.707035 AGGCTGATTTAGTTCTTGAATAGTACG 59.293 37.037 0.00 0.00 30.16 3.67
2578 4946 7.338462 GCTGATTTAGTTCTTGAATAGTACGC 58.662 38.462 0.00 0.00 30.16 4.42
2580 4948 7.324935 TGATTTAGTTCTTGAATAGTACGCCA 58.675 34.615 0.00 0.00 30.16 5.69
2583 4951 8.556213 TTTAGTTCTTGAATAGTACGCCAATT 57.444 30.769 0.00 0.00 30.16 2.32
2607 4975 6.911250 TTTTTCTTCAACTTCCTTATCCCC 57.089 37.500 0.00 0.00 0.00 4.81
2628 4997 1.197430 CCAGGGGTGCAGAGAGTTCT 61.197 60.000 0.00 0.00 0.00 3.01
2629 4998 0.689623 CAGGGGTGCAGAGAGTTCTT 59.310 55.000 0.00 0.00 0.00 2.52
2630 4999 0.689623 AGGGGTGCAGAGAGTTCTTG 59.310 55.000 0.00 0.00 0.00 3.02
2631 5000 0.687354 GGGGTGCAGAGAGTTCTTGA 59.313 55.000 0.00 0.00 0.00 3.02
2633 5002 2.147150 GGGTGCAGAGAGTTCTTGAAC 58.853 52.381 5.44 5.44 0.00 3.18
2634 5003 2.485479 GGGTGCAGAGAGTTCTTGAACA 60.485 50.000 14.80 0.00 0.00 3.18
2635 5004 2.545946 GGTGCAGAGAGTTCTTGAACAC 59.454 50.000 14.80 9.12 0.00 3.32
2636 5005 3.198068 GTGCAGAGAGTTCTTGAACACA 58.802 45.455 14.80 2.11 0.00 3.72
2638 5007 3.873361 TGCAGAGAGTTCTTGAACACAAG 59.127 43.478 14.80 0.00 41.38 3.16
2640 5009 4.210955 GCAGAGAGTTCTTGAACACAAGAG 59.789 45.833 14.80 2.96 46.62 2.85
2641 5010 5.355596 CAGAGAGTTCTTGAACACAAGAGT 58.644 41.667 14.80 5.14 46.62 3.24
2656 5039 3.118408 ACAAGAGTGTGAAGTGGTTGCTA 60.118 43.478 0.00 0.00 36.31 3.49
2666 5049 5.183904 GTGAAGTGGTTGCTAGGAAATCAAT 59.816 40.000 0.00 0.00 0.00 2.57
2669 5061 3.131046 GTGGTTGCTAGGAAATCAATGGG 59.869 47.826 0.00 0.00 0.00 4.00
2676 5068 2.807676 AGGAAATCAATGGGTGGTGTC 58.192 47.619 0.00 0.00 0.00 3.67
2680 5072 0.405198 ATCAATGGGTGGTGTCAGCA 59.595 50.000 0.00 0.00 42.72 4.41
2683 5075 1.252904 AATGGGTGGTGTCAGCATGC 61.253 55.000 10.51 10.51 42.72 4.06
2688 5080 2.034687 GGTGTCAGCATGCCAGGT 59.965 61.111 15.66 0.00 34.76 4.00
2689 5081 2.338015 GGTGTCAGCATGCCAGGTG 61.338 63.158 15.66 6.16 38.31 4.00
2691 5083 1.601477 TGTCAGCATGCCAGGTGTG 60.601 57.895 15.66 4.91 38.15 3.82
2695 5087 0.319211 CAGCATGCCAGGTGTGTTTG 60.319 55.000 15.66 0.00 32.59 2.93
2697 5089 1.667151 CATGCCAGGTGTGTTTGGG 59.333 57.895 0.00 0.00 34.96 4.12
2698 5090 0.827089 CATGCCAGGTGTGTTTGGGA 60.827 55.000 0.00 0.00 39.23 4.37
2699 5091 0.105760 ATGCCAGGTGTGTTTGGGAA 60.106 50.000 0.00 0.00 38.35 3.97
2700 5092 0.754957 TGCCAGGTGTGTTTGGGAAG 60.755 55.000 0.00 0.00 34.96 3.46
2703 5095 1.152546 AGGTGTGTTTGGGAAGGGC 60.153 57.895 0.00 0.00 0.00 5.19
2704 5096 1.456705 GGTGTGTTTGGGAAGGGCA 60.457 57.895 0.00 0.00 0.00 5.36
2705 5097 1.045911 GGTGTGTTTGGGAAGGGCAA 61.046 55.000 0.00 0.00 0.00 4.52
2707 5099 1.208293 GTGTGTTTGGGAAGGGCAAAA 59.792 47.619 0.00 0.00 0.00 2.44
2712 5137 3.133183 TGTTTGGGAAGGGCAAAAGTTAC 59.867 43.478 0.00 0.00 0.00 2.50
2713 5138 3.322191 TTGGGAAGGGCAAAAGTTACT 57.678 42.857 0.00 0.00 0.00 2.24
2714 5139 4.456662 TTGGGAAGGGCAAAAGTTACTA 57.543 40.909 0.00 0.00 0.00 1.82
2717 5142 4.598373 TGGGAAGGGCAAAAGTTACTAGTA 59.402 41.667 0.00 0.00 0.00 1.82
2719 5144 5.280368 GGGAAGGGCAAAAGTTACTAGTAGT 60.280 44.000 8.14 8.14 0.00 2.73
2723 5148 9.445878 GAAGGGCAAAAGTTACTAGTAGTAAAT 57.554 33.333 21.57 18.52 41.80 1.40
2781 5218 6.168389 GGAAATGCCATTCATCTCAGTTTTT 58.832 36.000 0.00 0.00 33.40 1.94
2784 5221 5.787953 TGCCATTCATCTCAGTTTTTCAA 57.212 34.783 0.00 0.00 0.00 2.69
2785 5222 6.349243 TGCCATTCATCTCAGTTTTTCAAT 57.651 33.333 0.00 0.00 0.00 2.57
2795 5232 4.858935 TCAGTTTTTCAATGTGCACTAGC 58.141 39.130 19.41 0.00 42.57 3.42
2805 5242 2.985456 GCACTAGCTGGGCTGACT 59.015 61.111 0.85 0.00 43.01 3.41
2807 5244 1.892819 GCACTAGCTGGGCTGACTCA 61.893 60.000 0.85 0.00 43.01 3.41
2808 5245 0.610174 CACTAGCTGGGCTGACTCAA 59.390 55.000 0.85 0.00 40.10 3.02
2809 5246 1.002430 CACTAGCTGGGCTGACTCAAA 59.998 52.381 0.85 0.00 40.10 2.69
2810 5247 1.277557 ACTAGCTGGGCTGACTCAAAG 59.722 52.381 0.85 0.00 40.10 2.77
2815 5252 0.249868 TGGGCTGACTCAAAGACACG 60.250 55.000 0.00 0.00 0.00 4.49
2816 5253 1.569479 GGGCTGACTCAAAGACACGC 61.569 60.000 0.00 0.00 0.00 5.34
2817 5254 0.880278 GGCTGACTCAAAGACACGCA 60.880 55.000 0.00 0.00 0.00 5.24
2818 5255 0.510359 GCTGACTCAAAGACACGCAG 59.490 55.000 0.00 0.00 0.00 5.18
2819 5256 1.869754 GCTGACTCAAAGACACGCAGA 60.870 52.381 0.00 0.00 0.00 4.26
2821 5258 3.062763 CTGACTCAAAGACACGCAGAAT 58.937 45.455 0.00 0.00 0.00 2.40
2823 5260 2.802816 GACTCAAAGACACGCAGAATGT 59.197 45.455 0.00 0.00 39.31 2.71
2824 5261 3.206150 ACTCAAAGACACGCAGAATGTT 58.794 40.909 0.00 0.00 39.31 2.71
2825 5262 3.627577 ACTCAAAGACACGCAGAATGTTT 59.372 39.130 0.00 0.00 39.31 2.83
2826 5263 3.951306 TCAAAGACACGCAGAATGTTTG 58.049 40.909 0.00 0.00 39.31 2.93
2827 5264 3.044986 CAAAGACACGCAGAATGTTTGG 58.955 45.455 0.00 0.00 39.31 3.28
2828 5265 2.254546 AGACACGCAGAATGTTTGGA 57.745 45.000 0.00 0.00 39.31 3.53
2831 5268 3.058016 AGACACGCAGAATGTTTGGATTG 60.058 43.478 0.00 0.00 39.31 2.67
2833 5270 3.818210 ACACGCAGAATGTTTGGATTGTA 59.182 39.130 0.00 0.00 39.31 2.41
2834 5271 4.277174 ACACGCAGAATGTTTGGATTGTAA 59.723 37.500 0.00 0.00 39.31 2.41
2836 5273 5.863397 CACGCAGAATGTTTGGATTGTAAAT 59.137 36.000 0.00 0.00 39.31 1.40
2837 5274 6.033831 CACGCAGAATGTTTGGATTGTAAATC 59.966 38.462 0.00 0.00 39.31 2.17
2838 5275 6.071952 ACGCAGAATGTTTGGATTGTAAATCT 60.072 34.615 0.40 0.00 39.31 2.40
2839 5276 6.252015 CGCAGAATGTTTGGATTGTAAATCTG 59.748 38.462 0.00 0.00 39.31 2.90
2842 5289 4.799564 TGTTTGGATTGTAAATCTGGGC 57.200 40.909 0.40 0.00 0.00 5.36
2847 5294 3.529734 TGGATTGTAAATCTGGGCCCTTA 59.470 43.478 25.70 10.49 0.00 2.69
2849 5296 4.532834 GATTGTAAATCTGGGCCCTTACA 58.467 43.478 23.72 23.72 33.57 2.41
2851 5298 5.718801 TTGTAAATCTGGGCCCTTACATA 57.281 39.130 26.50 17.63 34.98 2.29
2855 5302 4.814224 AATCTGGGCCCTTACATACATT 57.186 40.909 25.70 6.32 0.00 2.71
2856 5303 3.857157 TCTGGGCCCTTACATACATTC 57.143 47.619 25.70 0.00 0.00 2.67
2858 5305 4.562767 TCTGGGCCCTTACATACATTCTA 58.437 43.478 25.70 0.00 0.00 2.10
2877 5327 8.946085 ACATTCTATGTGATAAACGTCAATTGT 58.054 29.630 5.13 0.00 43.01 2.71
2882 5332 9.689075 CTATGTGATAAACGTCAATTGTACAAG 57.311 33.333 14.65 1.35 0.00 3.16
2883 5333 7.485418 TGTGATAAACGTCAATTGTACAAGT 57.515 32.000 14.65 8.79 0.00 3.16
2886 5336 9.866936 GTGATAAACGTCAATTGTACAAGTAAA 57.133 29.630 14.65 0.42 0.00 2.01
2887 5337 9.866936 TGATAAACGTCAATTGTACAAGTAAAC 57.133 29.630 14.65 11.60 0.00 2.01
2888 5338 9.866936 GATAAACGTCAATTGTACAAGTAAACA 57.133 29.630 14.65 0.00 0.00 2.83
3041 5491 4.599041 AGGCCAACATTTAGCACAGATAA 58.401 39.130 5.01 0.00 0.00 1.75
3052 5502 6.726258 TTAGCACAGATAACAGACAATGTG 57.274 37.500 0.00 0.00 43.00 3.21
3053 5503 4.898320 AGCACAGATAACAGACAATGTGA 58.102 39.130 7.27 0.00 43.00 3.58
3054 5504 4.934001 AGCACAGATAACAGACAATGTGAG 59.066 41.667 7.27 0.00 43.00 3.51
3113 5563 2.180159 TTTAGCAGCTGGGGGTCGAC 62.180 60.000 17.12 7.13 0.00 4.20
3118 5568 1.613630 AGCTGGGGGTCGACAATCT 60.614 57.895 18.91 2.22 0.00 2.40
3120 5570 1.899437 GCTGGGGGTCGACAATCTCA 61.899 60.000 18.91 11.15 0.00 3.27
3121 5571 0.613260 CTGGGGGTCGACAATCTCAA 59.387 55.000 18.91 0.00 0.00 3.02
3129 5579 3.871594 GGTCGACAATCTCAAATACCCTG 59.128 47.826 18.91 0.00 0.00 4.45
3145 5595 0.895559 CCTGTCAGGGAAACTTGGCC 60.896 60.000 11.46 0.00 42.18 5.36
3146 5596 0.111253 CTGTCAGGGAAACTTGGCCT 59.889 55.000 3.32 0.00 42.18 5.19
3147 5597 0.110486 TGTCAGGGAAACTTGGCCTC 59.890 55.000 3.32 0.00 42.18 4.70
3148 5598 0.609406 GTCAGGGAAACTTGGCCTCC 60.609 60.000 3.32 0.88 35.74 4.30
3153 5603 1.450025 GGAAACTTGGCCTCCGTAAG 58.550 55.000 3.32 0.39 0.00 2.34
3188 5638 3.270877 AGTCCATCCTTAAACATGTCGC 58.729 45.455 0.00 0.00 0.00 5.19
3248 5817 9.552114 CAAAATGTAGAAGCACAAGATAAAGAG 57.448 33.333 0.00 0.00 30.84 2.85
3307 5876 4.458295 CCATCACTGCAATTGAAGAAGAGT 59.542 41.667 20.85 3.07 0.00 3.24
3308 5877 5.048224 CCATCACTGCAATTGAAGAAGAGTT 60.048 40.000 20.85 1.35 0.00 3.01
3309 5878 6.444633 CATCACTGCAATTGAAGAAGAGTTT 58.555 36.000 20.85 0.69 0.00 2.66
3310 5879 5.824429 TCACTGCAATTGAAGAAGAGTTTG 58.176 37.500 20.85 6.06 0.00 2.93
3311 5880 5.589855 TCACTGCAATTGAAGAAGAGTTTGA 59.410 36.000 20.85 8.37 0.00 2.69
3312 5881 5.913514 CACTGCAATTGAAGAAGAGTTTGAG 59.086 40.000 20.85 0.00 0.00 3.02
3353 5928 4.952957 TGTGGAACCAACTTTGAATCTTGA 59.047 37.500 0.00 0.00 34.36 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 191 8.825667 AAATCTATTACGGTTGCAACAAAAAT 57.174 26.923 29.55 23.70 0.00 1.82
261 265 0.736636 TCTCGCCATTGTATCGTCGT 59.263 50.000 0.00 0.00 0.00 4.34
336 341 0.966179 GGCCGGTTCCAACTTTTGAT 59.034 50.000 1.90 0.00 0.00 2.57
553 636 0.605319 ACACGATGGCCATGTTCGTT 60.605 50.000 26.12 16.28 42.99 3.85
750 857 8.941977 TGTTCTTTTAGCACATACGTATTGAAT 58.058 29.630 5.03 3.93 0.00 2.57
751 858 8.312896 TGTTCTTTTAGCACATACGTATTGAA 57.687 30.769 5.03 0.00 0.00 2.69
753 860 9.554724 AAATGTTCTTTTAGCACATACGTATTG 57.445 29.630 5.03 9.02 31.00 1.90
802 909 4.160329 ACTCCACTCATTACTGAACCTCA 58.840 43.478 0.00 0.00 0.00 3.86
804 911 4.160329 TGACTCCACTCATTACTGAACCT 58.840 43.478 0.00 0.00 0.00 3.50
805 912 4.537135 TGACTCCACTCATTACTGAACC 57.463 45.455 0.00 0.00 0.00 3.62
809 916 4.743057 TGGATGACTCCACTCATTACTG 57.257 45.455 0.00 0.00 46.95 2.74
821 928 3.797039 TCCAAATGTCGATGGATGACTC 58.203 45.455 1.24 0.00 40.74 3.36
823 930 4.635765 TCTTTCCAAATGTCGATGGATGAC 59.364 41.667 6.32 0.00 44.83 3.06
826 933 5.945784 TCTTTCTTTCCAAATGTCGATGGAT 59.054 36.000 6.32 0.00 44.83 3.41
828 935 5.627499 TCTTTCTTTCCAAATGTCGATGG 57.373 39.130 0.00 0.00 38.09 3.51
829 936 7.426456 CGTATTCTTTCTTTCCAAATGTCGATG 59.574 37.037 0.00 0.00 0.00 3.84
830 937 7.333423 TCGTATTCTTTCTTTCCAAATGTCGAT 59.667 33.333 0.00 0.00 0.00 3.59
834 941 6.940298 TCCTCGTATTCTTTCTTTCCAAATGT 59.060 34.615 0.00 0.00 0.00 2.71
835 942 7.377766 TCCTCGTATTCTTTCTTTCCAAATG 57.622 36.000 0.00 0.00 0.00 2.32
837 944 7.811117 TTTCCTCGTATTCTTTCTTTCCAAA 57.189 32.000 0.00 0.00 0.00 3.28
838 945 7.811117 TTTTCCTCGTATTCTTTCTTTCCAA 57.189 32.000 0.00 0.00 0.00 3.53
841 948 7.273598 GCCATTTTTCCTCGTATTCTTTCTTTC 59.726 37.037 0.00 0.00 0.00 2.62
842 949 7.090808 GCCATTTTTCCTCGTATTCTTTCTTT 58.909 34.615 0.00 0.00 0.00 2.52
843 950 6.350194 GGCCATTTTTCCTCGTATTCTTTCTT 60.350 38.462 0.00 0.00 0.00 2.52
845 952 5.105917 TGGCCATTTTTCCTCGTATTCTTTC 60.106 40.000 0.00 0.00 0.00 2.62
846 953 4.770010 TGGCCATTTTTCCTCGTATTCTTT 59.230 37.500 0.00 0.00 0.00 2.52
851 958 2.878406 CGATGGCCATTTTTCCTCGTAT 59.122 45.455 21.84 0.00 0.00 3.06
852 959 2.285083 CGATGGCCATTTTTCCTCGTA 58.715 47.619 21.84 0.00 0.00 3.43
854 961 1.094785 ACGATGGCCATTTTTCCTCG 58.905 50.000 21.84 19.87 32.90 4.63
915 1022 7.535940 CGAGTTTATCCGTCTTATCTTCATCTC 59.464 40.741 0.00 0.00 0.00 2.75
1026 1140 3.689002 CTGGGAAGGGGCGAGCTTC 62.689 68.421 0.00 0.00 0.00 3.86
1167 1281 7.389607 GCAAATACAGTAGAACTAACCCTGAAA 59.610 37.037 0.00 0.00 0.00 2.69
1184 1298 1.732259 GGTCGACAGGTGCAAATACAG 59.268 52.381 18.91 0.00 0.00 2.74
1193 1313 1.371758 CACACTCGGTCGACAGGTG 60.372 63.158 24.35 24.35 0.00 4.00
1270 1398 2.584608 GTCACCTGCTGCCCGTAT 59.415 61.111 0.00 0.00 0.00 3.06
1436 1586 4.346127 TCAGAGCCTACTATGTACTCCGTA 59.654 45.833 0.00 0.00 36.48 4.02
1437 1587 3.136077 TCAGAGCCTACTATGTACTCCGT 59.864 47.826 0.00 0.00 36.48 4.69
1438 1588 3.499157 GTCAGAGCCTACTATGTACTCCG 59.501 52.174 0.00 0.00 36.48 4.63
1444 1594 3.203263 TCAGAGGTCAGAGCCTACTATGT 59.797 47.826 0.00 0.00 39.34 2.29
1447 1597 2.847449 AGTCAGAGGTCAGAGCCTACTA 59.153 50.000 0.00 0.00 39.34 1.82
1448 1598 1.638589 AGTCAGAGGTCAGAGCCTACT 59.361 52.381 0.00 0.00 39.34 2.57
1449 1599 1.748493 CAGTCAGAGGTCAGAGCCTAC 59.252 57.143 0.00 0.00 39.34 3.18
1450 1600 1.636003 TCAGTCAGAGGTCAGAGCCTA 59.364 52.381 0.00 0.00 39.34 3.93
1452 1602 1.261480 TTCAGTCAGAGGTCAGAGCC 58.739 55.000 0.00 0.00 0.00 4.70
1453 1603 3.608316 ATTTCAGTCAGAGGTCAGAGC 57.392 47.619 0.00 0.00 0.00 4.09
1454 1604 5.792741 AGAAATTTCAGTCAGAGGTCAGAG 58.207 41.667 19.99 0.00 0.00 3.35
1456 1606 5.872070 GGTAGAAATTTCAGTCAGAGGTCAG 59.128 44.000 19.99 0.00 0.00 3.51
1458 1608 4.865365 CGGTAGAAATTTCAGTCAGAGGTC 59.135 45.833 19.99 0.00 0.00 3.85
1459 1609 4.283722 ACGGTAGAAATTTCAGTCAGAGGT 59.716 41.667 19.99 4.39 0.00 3.85
1461 1611 5.230942 ACACGGTAGAAATTTCAGTCAGAG 58.769 41.667 19.99 10.67 0.00 3.35
1655 3752 0.176680 CTGGAACCACCGAGGAGATG 59.823 60.000 0.00 0.00 42.61 2.90
1666 3763 2.401699 CTGTCTGCTGGCTGGAACCA 62.402 60.000 0.00 0.00 38.29 3.67
1667 3764 1.673665 CTGTCTGCTGGCTGGAACC 60.674 63.158 0.00 0.00 0.00 3.62
1674 3778 0.605589 ACTAGTGTCTGTCTGCTGGC 59.394 55.000 0.00 0.00 0.00 4.85
1679 3783 4.938080 AGACAACAACTAGTGTCTGTCTG 58.062 43.478 23.22 14.82 45.96 3.51
1697 3804 3.684305 CACAACTGAACACTTGACAGACA 59.316 43.478 0.00 0.00 35.85 3.41
1698 3805 3.932710 TCACAACTGAACACTTGACAGAC 59.067 43.478 0.00 0.00 35.85 3.51
1712 3828 4.589216 ATCACCCATTTTGTCACAACTG 57.411 40.909 0.00 0.00 0.00 3.16
1740 3856 8.926374 TGAATTCACCATCAAATAGCCAAATAT 58.074 29.630 3.38 0.00 0.00 1.28
1742 3858 7.185318 TGAATTCACCATCAAATAGCCAAAT 57.815 32.000 3.38 0.00 0.00 2.32
1747 3863 5.585390 CACCTGAATTCACCATCAAATAGC 58.415 41.667 3.38 0.00 0.00 2.97
1750 3866 4.081862 CAGCACCTGAATTCACCATCAAAT 60.082 41.667 3.38 0.00 32.44 2.32
1781 3897 3.198068 GGCGTTTCTAAGATCAGCATCA 58.802 45.455 0.00 0.00 0.00 3.07
1784 3900 1.203758 TCGGCGTTTCTAAGATCAGCA 59.796 47.619 6.85 0.00 0.00 4.41
1790 3906 2.413765 CGAGAAGTCGGCGTTTCTAAGA 60.414 50.000 22.25 0.00 42.87 2.10
1823 3942 3.306502 GCTGCTACTGGTGTACCTTTGTA 60.307 47.826 2.32 3.10 36.82 2.41
1835 3954 5.180492 GTCTACTGTCTATAGCTGCTACTGG 59.820 48.000 12.26 5.38 0.00 4.00
1844 3963 4.742659 GCTTTGCTGTCTACTGTCTATAGC 59.257 45.833 0.00 4.71 0.00 2.97
1845 3964 5.895928 TGCTTTGCTGTCTACTGTCTATAG 58.104 41.667 0.00 0.00 0.00 1.31
1849 3968 3.692257 ATGCTTTGCTGTCTACTGTCT 57.308 42.857 0.00 0.00 0.00 3.41
1850 3969 5.111989 TGATATGCTTTGCTGTCTACTGTC 58.888 41.667 0.00 0.00 0.00 3.51
1852 3971 5.756833 TCATGATATGCTTTGCTGTCTACTG 59.243 40.000 0.00 0.00 0.00 2.74
1853 3972 5.922053 TCATGATATGCTTTGCTGTCTACT 58.078 37.500 0.00 0.00 0.00 2.57
1854 3973 6.798315 ATCATGATATGCTTTGCTGTCTAC 57.202 37.500 6.36 0.00 0.00 2.59
1856 3975 5.593095 ACAATCATGATATGCTTTGCTGTCT 59.407 36.000 9.04 0.00 30.88 3.41
1857 3976 5.828747 ACAATCATGATATGCTTTGCTGTC 58.171 37.500 9.04 0.00 30.88 3.51
1858 3977 5.847111 ACAATCATGATATGCTTTGCTGT 57.153 34.783 9.04 3.35 30.88 4.40
1859 3978 6.019075 CCAAACAATCATGATATGCTTTGCTG 60.019 38.462 9.04 2.68 30.88 4.41
1860 3979 6.046593 CCAAACAATCATGATATGCTTTGCT 58.953 36.000 9.04 0.00 30.88 3.91
1861 3980 5.235616 CCCAAACAATCATGATATGCTTTGC 59.764 40.000 9.04 0.00 30.88 3.68
1862 3981 6.342906 ACCCAAACAATCATGATATGCTTTG 58.657 36.000 9.04 17.46 32.73 2.77
1863 3982 6.549433 ACCCAAACAATCATGATATGCTTT 57.451 33.333 9.04 9.47 0.00 3.51
1864 3983 6.154877 TGAACCCAAACAATCATGATATGCTT 59.845 34.615 9.04 4.92 0.00 3.91
1867 3986 7.337480 TCTGAACCCAAACAATCATGATATG 57.663 36.000 9.04 11.68 0.00 1.78
1868 3987 7.959658 TTCTGAACCCAAACAATCATGATAT 57.040 32.000 9.04 0.00 0.00 1.63
1869 3988 7.959658 ATTCTGAACCCAAACAATCATGATA 57.040 32.000 9.04 0.00 0.00 2.15
1870 3989 6.862469 ATTCTGAACCCAAACAATCATGAT 57.138 33.333 1.18 1.18 0.00 2.45
1873 3992 6.211184 TGCTTATTCTGAACCCAAACAATCAT 59.789 34.615 0.00 0.00 0.00 2.45
1875 3994 6.024552 TGCTTATTCTGAACCCAAACAATC 57.975 37.500 0.00 0.00 0.00 2.67
1876 3995 5.539955 ACTGCTTATTCTGAACCCAAACAAT 59.460 36.000 0.00 0.00 0.00 2.71
1877 3996 4.892934 ACTGCTTATTCTGAACCCAAACAA 59.107 37.500 0.00 0.00 0.00 2.83
1878 3997 4.469657 ACTGCTTATTCTGAACCCAAACA 58.530 39.130 0.00 0.00 0.00 2.83
1879 3998 6.016610 TGTTACTGCTTATTCTGAACCCAAAC 60.017 38.462 0.00 0.00 0.00 2.93
1880 3999 6.065374 TGTTACTGCTTATTCTGAACCCAAA 58.935 36.000 0.00 0.00 0.00 3.28
1912 4031 5.830912 ACACGATTTCAAGCAAAATTCAGA 58.169 33.333 0.00 0.00 0.00 3.27
1925 4044 1.805943 TCGACCGAGTACACGATTTCA 59.194 47.619 14.54 0.00 35.09 2.69
1937 4056 2.567049 GGTGACCACTCGACCGAG 59.433 66.667 16.81 16.81 46.91 4.63
1949 4068 0.179137 TGACGATCAGATGCGGTGAC 60.179 55.000 0.00 0.00 0.00 3.67
1950 4069 2.188912 TGACGATCAGATGCGGTGA 58.811 52.632 0.00 0.00 0.00 4.02
1959 4078 0.665298 TCCGATGCTCTGACGATCAG 59.335 55.000 8.24 8.24 45.59 2.90
1961 4080 0.665835 AGTCCGATGCTCTGACGATC 59.334 55.000 0.00 0.00 36.03 3.69
1963 4082 1.604278 CATAGTCCGATGCTCTGACGA 59.396 52.381 0.00 0.00 36.03 4.20
1964 4083 1.335415 CCATAGTCCGATGCTCTGACG 60.335 57.143 0.00 0.00 36.03 4.35
1965 4084 1.683917 ACCATAGTCCGATGCTCTGAC 59.316 52.381 0.00 0.00 31.83 3.51
1966 4085 2.073252 ACCATAGTCCGATGCTCTGA 57.927 50.000 0.00 0.00 0.00 3.27
1967 4086 2.898729 AACCATAGTCCGATGCTCTG 57.101 50.000 0.00 0.00 0.00 3.35
1970 4089 2.236146 TGTGAAACCATAGTCCGATGCT 59.764 45.455 0.00 0.00 34.36 3.79
1972 4091 2.609459 GCTGTGAAACCATAGTCCGATG 59.391 50.000 0.00 0.00 34.36 3.84
1975 4173 2.093306 TGCTGTGAAACCATAGTCCG 57.907 50.000 0.00 0.00 34.36 4.79
1979 4177 4.012374 ACCAGATTGCTGTGAAACCATAG 58.988 43.478 0.00 0.00 40.63 2.23
1980 4178 4.032960 ACCAGATTGCTGTGAAACCATA 57.967 40.909 0.00 0.00 40.63 2.74
1988 4186 3.672511 GCAGAATGAACCAGATTGCTGTG 60.673 47.826 0.00 0.00 39.69 3.66
1994 4192 3.446442 ACCTGCAGAATGAACCAGATT 57.554 42.857 17.39 0.00 39.69 2.40
1999 4197 5.863935 GTCAAATTTACCTGCAGAATGAACC 59.136 40.000 17.39 0.00 39.69 3.62
2002 4200 6.647334 TTGTCAAATTTACCTGCAGAATGA 57.353 33.333 17.39 5.68 39.69 2.57
2021 4237 2.289010 CCCTTCCAAGTTGGCATTTGTC 60.289 50.000 17.68 0.00 37.47 3.18
2106 4322 5.409826 CCAGACAGAACTTGGAGATAAACAC 59.590 44.000 0.00 0.00 0.00 3.32
2186 4402 4.033243 CAGTACGACATTGATCACATGGTG 59.967 45.833 16.89 12.51 34.45 4.17
2197 4413 7.637519 CAGCAAGATAATTTCAGTACGACATTG 59.362 37.037 0.00 0.00 0.00 2.82
2204 4420 8.383619 CACAGTACAGCAAGATAATTTCAGTAC 58.616 37.037 0.00 0.00 0.00 2.73
2205 4421 7.549134 CCACAGTACAGCAAGATAATTTCAGTA 59.451 37.037 0.00 0.00 0.00 2.74
2207 4423 6.676456 GCCACAGTACAGCAAGATAATTTCAG 60.676 42.308 0.00 0.00 0.00 3.02
2210 4426 5.009631 TGCCACAGTACAGCAAGATAATTT 58.990 37.500 0.00 0.00 32.56 1.82
2211 4427 4.588899 TGCCACAGTACAGCAAGATAATT 58.411 39.130 0.00 0.00 32.56 1.40
2214 4430 3.197549 TGATGCCACAGTACAGCAAGATA 59.802 43.478 0.00 0.00 40.46 1.98
2220 4436 0.321564 TGGTGATGCCACAGTACAGC 60.322 55.000 0.00 0.00 43.61 4.40
2221 4437 3.933879 TGGTGATGCCACAGTACAG 57.066 52.632 0.00 0.00 43.61 2.74
2247 4601 4.667573 AGAGGAGAGAAAAATGGGGAAAC 58.332 43.478 0.00 0.00 0.00 2.78
2249 4603 3.267031 GGAGAGGAGAGAAAAATGGGGAA 59.733 47.826 0.00 0.00 0.00 3.97
2251 4605 2.578021 TGGAGAGGAGAGAAAAATGGGG 59.422 50.000 0.00 0.00 0.00 4.96
2253 4607 4.833478 TCTGGAGAGGAGAGAAAAATGG 57.167 45.455 0.00 0.00 0.00 3.16
2262 4616 2.103373 CCGTGAAATCTGGAGAGGAGA 58.897 52.381 0.00 0.00 0.00 3.71
2263 4617 2.103373 TCCGTGAAATCTGGAGAGGAG 58.897 52.381 0.00 0.00 0.00 3.69
2268 4622 2.939103 GGAACATCCGTGAAATCTGGAG 59.061 50.000 2.37 0.00 34.75 3.86
2270 4624 2.420022 GTGGAACATCCGTGAAATCTGG 59.580 50.000 0.00 0.00 44.52 3.86
2278 4632 1.471287 TCTCGTAGTGGAACATCCGTG 59.529 52.381 0.00 0.00 44.52 4.94
2281 4635 1.741706 TCGTCTCGTAGTGGAACATCC 59.258 52.381 0.00 0.00 44.52 3.51
2302 4656 2.024176 TGCAAAGGTAGTCCCTCTGA 57.976 50.000 0.00 0.00 45.47 3.27
2305 4659 4.809673 CAATTTTGCAAAGGTAGTCCCTC 58.190 43.478 12.41 0.00 45.47 4.30
2347 4701 6.324819 CAAGTTCCTGCATATCGACATTTTT 58.675 36.000 0.00 0.00 0.00 1.94
2348 4702 5.677091 GCAAGTTCCTGCATATCGACATTTT 60.677 40.000 0.00 0.00 42.17 1.82
2349 4703 4.201950 GCAAGTTCCTGCATATCGACATTT 60.202 41.667 0.00 0.00 42.17 2.32
2361 4718 1.135721 GAATGGATGGCAAGTTCCTGC 59.864 52.381 7.12 0.00 41.85 4.85
2364 4721 3.010200 AGAGAATGGATGGCAAGTTCC 57.990 47.619 0.00 0.00 0.00 3.62
2368 4725 6.297582 AGAGATTAAGAGAATGGATGGCAAG 58.702 40.000 0.00 0.00 0.00 4.01
2370 4727 5.901413 AGAGATTAAGAGAATGGATGGCA 57.099 39.130 0.00 0.00 0.00 4.92
2371 4728 6.997476 AGAAAGAGATTAAGAGAATGGATGGC 59.003 38.462 0.00 0.00 0.00 4.40
2372 4729 7.661027 GGAGAAAGAGATTAAGAGAATGGATGG 59.339 40.741 0.00 0.00 0.00 3.51
2381 4738 6.580788 TGCAGATGGAGAAAGAGATTAAGAG 58.419 40.000 0.00 0.00 0.00 2.85
2382 4739 6.550938 TGCAGATGGAGAAAGAGATTAAGA 57.449 37.500 0.00 0.00 0.00 2.10
2383 4740 7.804843 AATGCAGATGGAGAAAGAGATTAAG 57.195 36.000 0.00 0.00 0.00 1.85
2385 4742 7.498239 CAGAAATGCAGATGGAGAAAGAGATTA 59.502 37.037 0.00 0.00 0.00 1.75
2386 4743 6.319152 CAGAAATGCAGATGGAGAAAGAGATT 59.681 38.462 0.00 0.00 0.00 2.40
2387 4744 5.823570 CAGAAATGCAGATGGAGAAAGAGAT 59.176 40.000 0.00 0.00 0.00 2.75
2392 4749 6.417258 TCATACAGAAATGCAGATGGAGAAA 58.583 36.000 0.00 0.00 0.00 2.52
2395 4752 5.995897 TCATCATACAGAAATGCAGATGGAG 59.004 40.000 6.87 0.00 33.92 3.86
2401 4758 5.298527 ACCATGTCATCATACAGAAATGCAG 59.701 40.000 0.00 0.00 31.70 4.41
2403 4760 5.762825 ACCATGTCATCATACAGAAATGC 57.237 39.130 0.00 0.00 31.70 3.56
2405 4762 9.334947 CTAAGAACCATGTCATCATACAGAAAT 57.665 33.333 0.00 0.00 31.70 2.17
2406 4763 7.280876 GCTAAGAACCATGTCATCATACAGAAA 59.719 37.037 0.00 0.00 31.70 2.52
2409 4766 5.176406 CGCTAAGAACCATGTCATCATACAG 59.824 44.000 0.00 0.00 31.70 2.74
2413 4770 4.406648 TCGCTAAGAACCATGTCATCAT 57.593 40.909 0.00 0.00 34.21 2.45
2416 4773 5.677091 GCAAAATCGCTAAGAACCATGTCAT 60.677 40.000 0.00 0.00 0.00 3.06
2417 4774 4.379394 GCAAAATCGCTAAGAACCATGTCA 60.379 41.667 0.00 0.00 0.00 3.58
2418 4775 4.098416 GCAAAATCGCTAAGAACCATGTC 58.902 43.478 0.00 0.00 0.00 3.06
2419 4776 3.505680 TGCAAAATCGCTAAGAACCATGT 59.494 39.130 0.00 0.00 0.00 3.21
2420 4777 4.095410 TGCAAAATCGCTAAGAACCATG 57.905 40.909 0.00 0.00 0.00 3.66
2431 4798 1.071305 GCACAACAGTTGCAAAATCGC 60.071 47.619 13.56 1.66 0.00 4.58
2432 4799 2.034675 GTGCACAACAGTTGCAAAATCG 60.035 45.455 13.17 0.00 40.45 3.34
2433 4800 2.284952 GGTGCACAACAGTTGCAAAATC 59.715 45.455 20.43 0.00 40.45 2.17
2443 4811 1.686355 TTTACCCTGGTGCACAACAG 58.314 50.000 20.43 16.84 45.48 3.16
2446 4814 2.038689 TCGTATTTACCCTGGTGCACAA 59.961 45.455 20.43 6.43 0.00 3.33
2466 4834 1.816074 TTGTGGCATTTCCGGTAGTC 58.184 50.000 0.00 0.00 37.80 2.59
2475 4843 3.515602 AGAGTCTCCTTTGTGGCATTT 57.484 42.857 0.00 0.00 35.26 2.32
2478 4846 3.117888 AGAAAAGAGTCTCCTTTGTGGCA 60.118 43.478 1.02 0.00 36.57 4.92
2481 4849 3.879295 TGCAGAAAAGAGTCTCCTTTGTG 59.121 43.478 14.04 14.04 36.57 3.33
2484 4852 7.823745 TTATTTGCAGAAAAGAGTCTCCTTT 57.176 32.000 0.00 0.00 37.94 3.11
2496 4864 7.014711 TCACCCTTGTACATTTATTTGCAGAAA 59.985 33.333 0.00 0.00 0.00 2.52
2509 4877 6.126863 TCATTCTTCTTCACCCTTGTACAT 57.873 37.500 0.00 0.00 0.00 2.29
2510 4878 5.560722 TCATTCTTCTTCACCCTTGTACA 57.439 39.130 0.00 0.00 0.00 2.90
2511 4879 6.231211 TCTTCATTCTTCTTCACCCTTGTAC 58.769 40.000 0.00 0.00 0.00 2.90
2512 4880 6.270000 TCTCTTCATTCTTCTTCACCCTTGTA 59.730 38.462 0.00 0.00 0.00 2.41
2513 4881 5.072329 TCTCTTCATTCTTCTTCACCCTTGT 59.928 40.000 0.00 0.00 0.00 3.16
2514 4882 5.411053 GTCTCTTCATTCTTCTTCACCCTTG 59.589 44.000 0.00 0.00 0.00 3.61
2515 4883 5.309282 AGTCTCTTCATTCTTCTTCACCCTT 59.691 40.000 0.00 0.00 0.00 3.95
2517 4885 5.159273 AGTCTCTTCATTCTTCTTCACCC 57.841 43.478 0.00 0.00 0.00 4.61
2518 4886 8.091449 TCTTTAGTCTCTTCATTCTTCTTCACC 58.909 37.037 0.00 0.00 0.00 4.02
2519 4887 9.139174 CTCTTTAGTCTCTTCATTCTTCTTCAC 57.861 37.037 0.00 0.00 0.00 3.18
2525 4893 7.039644 TCCGAACTCTTTAGTCTCTTCATTCTT 60.040 37.037 0.00 0.00 33.75 2.52
2532 4900 3.193903 GCCTCCGAACTCTTTAGTCTCTT 59.806 47.826 0.00 0.00 33.75 2.85
2533 4901 2.756207 GCCTCCGAACTCTTTAGTCTCT 59.244 50.000 0.00 0.00 33.75 3.10
2541 4909 3.515901 ACTAAATCAGCCTCCGAACTCTT 59.484 43.478 0.00 0.00 0.00 2.85
2545 4913 3.863041 AGAACTAAATCAGCCTCCGAAC 58.137 45.455 0.00 0.00 0.00 3.95
2549 4917 7.051000 ACTATTCAAGAACTAAATCAGCCTCC 58.949 38.462 0.00 0.00 0.00 4.30
2554 4922 7.491372 TGGCGTACTATTCAAGAACTAAATCAG 59.509 37.037 0.00 0.00 0.00 2.90
2609 4977 1.197430 AGAACTCTCTGCACCCCTGG 61.197 60.000 0.00 0.00 0.00 4.45
2610 4978 0.689623 AAGAACTCTCTGCACCCCTG 59.310 55.000 0.00 0.00 30.03 4.45
2611 4979 0.689623 CAAGAACTCTCTGCACCCCT 59.310 55.000 0.00 0.00 30.03 4.79
2612 4980 0.687354 TCAAGAACTCTCTGCACCCC 59.313 55.000 0.00 0.00 30.03 4.95
2634 5003 2.017049 GCAACCACTTCACACTCTTGT 58.983 47.619 0.00 0.00 35.84 3.16
2635 5004 2.292267 AGCAACCACTTCACACTCTTG 58.708 47.619 0.00 0.00 0.00 3.02
2636 5005 2.717639 AGCAACCACTTCACACTCTT 57.282 45.000 0.00 0.00 0.00 2.85
2638 5007 2.037251 TCCTAGCAACCACTTCACACTC 59.963 50.000 0.00 0.00 0.00 3.51
2640 5009 2.543777 TCCTAGCAACCACTTCACAC 57.456 50.000 0.00 0.00 0.00 3.82
2641 5010 3.569194 TTTCCTAGCAACCACTTCACA 57.431 42.857 0.00 0.00 0.00 3.58
2643 5012 4.365514 TGATTTCCTAGCAACCACTTCA 57.634 40.909 0.00 0.00 0.00 3.02
2644 5013 5.393461 CCATTGATTTCCTAGCAACCACTTC 60.393 44.000 0.00 0.00 0.00 3.01
2645 5014 4.463891 CCATTGATTTCCTAGCAACCACTT 59.536 41.667 0.00 0.00 0.00 3.16
2647 5016 3.131046 CCCATTGATTTCCTAGCAACCAC 59.869 47.826 0.00 0.00 0.00 4.16
2656 5039 2.109834 TGACACCACCCATTGATTTCCT 59.890 45.455 0.00 0.00 0.00 3.36
2666 5049 2.282391 GCATGCTGACACCACCCA 60.282 61.111 11.37 0.00 0.00 4.51
2669 5061 2.338015 CCTGGCATGCTGACACCAC 61.338 63.158 18.92 0.00 28.59 4.16
2676 5068 0.319211 CAAACACACCTGGCATGCTG 60.319 55.000 18.92 10.48 0.00 4.41
2680 5072 0.105760 TTCCCAAACACACCTGGCAT 60.106 50.000 0.00 0.00 0.00 4.40
2683 5075 0.827507 CCCTTCCCAAACACACCTGG 60.828 60.000 0.00 0.00 0.00 4.45
2688 5080 1.484240 CTTTTGCCCTTCCCAAACACA 59.516 47.619 0.00 0.00 32.40 3.72
2689 5081 1.484653 ACTTTTGCCCTTCCCAAACAC 59.515 47.619 0.00 0.00 32.40 3.32
2691 5083 3.386726 AGTAACTTTTGCCCTTCCCAAAC 59.613 43.478 0.00 0.00 32.40 2.93
2695 5087 4.030314 ACTAGTAACTTTTGCCCTTCCC 57.970 45.455 0.00 0.00 0.00 3.97
2697 5089 8.837788 TTTACTACTAGTAACTTTTGCCCTTC 57.162 34.615 8.00 0.00 40.12 3.46
2730 5155 8.675705 TGTATCAATATTACCAGACCAACATG 57.324 34.615 0.00 0.00 0.00 3.21
2731 5156 9.288576 CATGTATCAATATTACCAGACCAACAT 57.711 33.333 0.00 0.00 0.00 2.71
2735 5160 7.625498 TCCATGTATCAATATTACCAGACCA 57.375 36.000 0.00 0.00 0.00 4.02
2736 5161 8.918202 TTTCCATGTATCAATATTACCAGACC 57.082 34.615 0.00 0.00 0.00 3.85
2738 5163 9.013229 GCATTTCCATGTATCAATATTACCAGA 57.987 33.333 0.00 0.00 32.28 3.86
2739 5164 8.246180 GGCATTTCCATGTATCAATATTACCAG 58.754 37.037 0.00 0.00 32.28 4.00
2740 5165 7.727634 TGGCATTTCCATGTATCAATATTACCA 59.272 33.333 0.00 0.00 40.72 3.25
2741 5166 8.121305 TGGCATTTCCATGTATCAATATTACC 57.879 34.615 0.00 0.00 40.72 2.85
2763 5200 6.090358 CACATTGAAAAACTGAGATGAATGGC 59.910 38.462 0.00 0.00 0.00 4.40
2774 5211 4.678287 CAGCTAGTGCACATTGAAAAACTG 59.322 41.667 21.04 8.84 42.74 3.16
2775 5212 4.261741 CCAGCTAGTGCACATTGAAAAACT 60.262 41.667 21.04 0.00 42.74 2.66
2776 5213 3.983344 CCAGCTAGTGCACATTGAAAAAC 59.017 43.478 21.04 0.00 42.74 2.43
2781 5218 0.677731 GCCCAGCTAGTGCACATTGA 60.678 55.000 21.04 0.00 42.74 2.57
2784 5221 1.077930 CAGCCCAGCTAGTGCACAT 60.078 57.895 21.04 6.83 42.74 3.21
2785 5222 2.216331 TCAGCCCAGCTAGTGCACA 61.216 57.895 21.04 4.13 42.74 4.57
2795 5232 1.517242 GTGTCTTTGAGTCAGCCCAG 58.483 55.000 0.00 0.00 0.00 4.45
2801 5238 2.595124 TTCTGCGTGTCTTTGAGTCA 57.405 45.000 0.00 0.00 0.00 3.41
2804 5241 3.885484 AACATTCTGCGTGTCTTTGAG 57.115 42.857 0.00 0.00 0.00 3.02
2805 5242 3.243035 CCAAACATTCTGCGTGTCTTTGA 60.243 43.478 0.00 0.00 0.00 2.69
2807 5244 2.948979 TCCAAACATTCTGCGTGTCTTT 59.051 40.909 0.00 0.00 0.00 2.52
2808 5245 2.571212 TCCAAACATTCTGCGTGTCTT 58.429 42.857 0.00 0.00 0.00 3.01
2809 5246 2.254546 TCCAAACATTCTGCGTGTCT 57.745 45.000 0.00 0.00 0.00 3.41
2810 5247 3.236816 CAATCCAAACATTCTGCGTGTC 58.763 45.455 0.00 0.00 0.00 3.67
2815 5252 6.532657 CCAGATTTACAATCCAAACATTCTGC 59.467 38.462 0.00 0.00 0.00 4.26
2816 5253 7.037438 CCCAGATTTACAATCCAAACATTCTG 58.963 38.462 0.00 0.00 0.00 3.02
2817 5254 6.351286 GCCCAGATTTACAATCCAAACATTCT 60.351 38.462 0.00 0.00 0.00 2.40
2818 5255 5.812127 GCCCAGATTTACAATCCAAACATTC 59.188 40.000 0.00 0.00 0.00 2.67
2819 5256 5.338300 GGCCCAGATTTACAATCCAAACATT 60.338 40.000 0.00 0.00 0.00 2.71
2821 5258 3.513515 GGCCCAGATTTACAATCCAAACA 59.486 43.478 0.00 0.00 0.00 2.83
2823 5260 3.103742 GGGCCCAGATTTACAATCCAAA 58.896 45.455 19.95 0.00 0.00 3.28
2824 5261 2.314549 AGGGCCCAGATTTACAATCCAA 59.685 45.455 27.56 0.00 0.00 3.53
2825 5262 1.929494 AGGGCCCAGATTTACAATCCA 59.071 47.619 27.56 0.00 0.00 3.41
2826 5263 2.755952 AGGGCCCAGATTTACAATCC 57.244 50.000 27.56 0.00 0.00 3.01
2827 5264 4.532834 TGTAAGGGCCCAGATTTACAATC 58.467 43.478 27.56 2.34 34.21 2.67
2828 5265 4.601406 TGTAAGGGCCCAGATTTACAAT 57.399 40.909 27.56 0.00 34.21 2.71
2831 5268 5.043737 TGTATGTAAGGGCCCAGATTTAC 57.956 43.478 27.56 22.88 0.00 2.01
2833 5270 4.814224 ATGTATGTAAGGGCCCAGATTT 57.186 40.909 27.56 12.39 0.00 2.17
2834 5271 4.416848 AGAATGTATGTAAGGGCCCAGATT 59.583 41.667 27.56 12.33 0.00 2.40
2836 5273 3.393687 AGAATGTATGTAAGGGCCCAGA 58.606 45.455 27.56 8.34 0.00 3.86
2837 5274 3.864789 AGAATGTATGTAAGGGCCCAG 57.135 47.619 27.56 0.00 0.00 4.45
2838 5275 4.663120 ACATAGAATGTATGTAAGGGCCCA 59.337 41.667 27.56 2.25 42.78 5.36
2839 5276 5.003804 CACATAGAATGTATGTAAGGGCCC 58.996 45.833 16.46 16.46 42.70 5.80
2847 5294 9.594478 TTGACGTTTATCACATAGAATGTATGT 57.406 29.630 0.00 0.00 42.70 2.29
2851 5298 8.946085 ACAATTGACGTTTATCACATAGAATGT 58.054 29.630 13.59 0.00 46.22 2.71
2855 5302 8.989653 TGTACAATTGACGTTTATCACATAGA 57.010 30.769 13.59 0.00 0.00 1.98
2856 5303 9.689075 CTTGTACAATTGACGTTTATCACATAG 57.311 33.333 13.59 0.00 0.00 2.23
2858 5305 8.094798 ACTTGTACAATTGACGTTTATCACAT 57.905 30.769 13.59 0.00 0.00 3.21
2877 5327 9.211485 GCTACCTGAATAAGTTGTTTACTTGTA 57.789 33.333 0.00 0.00 46.46 2.41
2902 5352 4.766969 CCGTTGTTTCGGTAGTATTAGC 57.233 45.455 0.00 0.00 44.77 3.09
2913 5363 0.657368 GAAGCAGTGCCGTTGTTTCG 60.657 55.000 12.58 0.00 0.00 3.46
2917 5367 0.882042 CTCAGAAGCAGTGCCGTTGT 60.882 55.000 12.58 0.00 0.00 3.32
3041 5491 4.949856 AGGAAAAACACTCACATTGTCTGT 59.050 37.500 0.00 0.00 39.20 3.41
3052 5502 5.966742 ATAGCCTTCAAGGAAAAACACTC 57.033 39.130 7.98 0.00 37.67 3.51
3053 5503 5.011023 CCAATAGCCTTCAAGGAAAAACACT 59.989 40.000 7.98 0.00 37.67 3.55
3054 5504 5.010617 TCCAATAGCCTTCAAGGAAAAACAC 59.989 40.000 7.98 0.00 37.67 3.32
3129 5579 0.609406 GGAGGCCAAGTTTCCCTGAC 60.609 60.000 5.01 0.00 0.00 3.51
3138 5588 0.036294 GAAGCTTACGGAGGCCAAGT 60.036 55.000 5.01 3.99 0.00 3.16
3141 5591 1.295423 GTGAAGCTTACGGAGGCCA 59.705 57.895 5.01 0.00 0.00 5.36
3143 5593 1.398390 CATTGTGAAGCTTACGGAGGC 59.602 52.381 0.00 0.00 0.00 4.70
3145 5595 2.094894 CAGCATTGTGAAGCTTACGGAG 59.905 50.000 0.00 0.00 39.50 4.63
3146 5596 2.076100 CAGCATTGTGAAGCTTACGGA 58.924 47.619 0.00 0.00 39.50 4.69
3147 5597 2.076100 TCAGCATTGTGAAGCTTACGG 58.924 47.619 0.00 0.00 39.50 4.02
3148 5598 2.738846 ACTCAGCATTGTGAAGCTTACG 59.261 45.455 0.00 0.00 39.50 3.18
3153 5603 1.527034 TGGACTCAGCATTGTGAAGC 58.473 50.000 0.00 0.00 0.00 3.86
3188 5638 5.239306 TGTTAAGCAGTGAAGATGAAACTGG 59.761 40.000 0.00 0.00 41.31 4.00
3248 5817 0.539986 TGCTCCGGGTAATGGTCTTC 59.460 55.000 0.00 0.00 0.00 2.87
3307 5876 3.005050 ACGTCATCTCACGGTAACTCAAA 59.995 43.478 0.00 0.00 44.41 2.69
3308 5877 2.555325 ACGTCATCTCACGGTAACTCAA 59.445 45.455 0.00 0.00 44.41 3.02
3309 5878 2.156917 ACGTCATCTCACGGTAACTCA 58.843 47.619 0.00 0.00 44.41 3.41
3310 5879 2.915463 CAACGTCATCTCACGGTAACTC 59.085 50.000 0.00 0.00 44.41 3.01
3311 5880 2.295349 ACAACGTCATCTCACGGTAACT 59.705 45.455 0.00 0.00 44.41 2.24
3312 5881 2.407361 CACAACGTCATCTCACGGTAAC 59.593 50.000 0.00 0.00 44.41 2.50
3353 5928 2.435372 TGTTGGAGACTTTGGCTTGT 57.565 45.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.