Multiple sequence alignment - TraesCS3A01G059900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G059900 chr3A 100.000 4968 0 0 696 5663 36233071 36228104 0.000000e+00 9175.0
1 TraesCS3A01G059900 chr3A 100.000 391 0 0 1 391 36233766 36233376 0.000000e+00 723.0
2 TraesCS3A01G059900 chr3A 83.155 843 63 41 705 1505 667987600 667988405 0.000000e+00 697.0
3 TraesCS3A01G059900 chr3A 84.779 565 39 25 4829 5355 36191930 36191375 1.810000e-144 523.0
4 TraesCS3A01G059900 chr3B 87.658 1742 130 47 696 2395 43740182 43738484 0.000000e+00 1947.0
5 TraesCS3A01G059900 chr3B 97.630 633 15 0 2474 3106 43738489 43737857 0.000000e+00 1086.0
6 TraesCS3A01G059900 chr3B 87.169 982 62 36 4087 5035 43737064 43736114 0.000000e+00 1057.0
7 TraesCS3A01G059900 chr3B 85.077 650 70 21 1753 2395 222545390 222546019 6.190000e-179 638.0
8 TraesCS3A01G059900 chr3B 87.114 551 60 5 3391 3931 43737745 43737196 1.040000e-171 614.0
9 TraesCS3A01G059900 chr3B 93.883 376 23 0 2474 2849 238018815 238019190 8.230000e-158 568.0
10 TraesCS3A01G059900 chr3B 84.807 441 45 14 1956 2392 238018394 238018816 1.890000e-114 424.0
11 TraesCS3A01G059900 chr3B 85.357 280 17 3 136 391 43740563 43740284 9.350000e-68 268.0
12 TraesCS3A01G059900 chr3B 92.157 153 12 0 5203 5355 43735803 43735651 3.440000e-52 217.0
13 TraesCS3A01G059900 chr3B 100.000 87 0 0 3929 4015 118309419 118309505 1.630000e-35 161.0
14 TraesCS3A01G059900 chr3B 96.000 100 3 1 3930 4029 232569396 232569298 1.630000e-35 161.0
15 TraesCS3A01G059900 chr3B 82.778 180 18 8 5372 5541 43735663 43735487 1.270000e-31 148.0
16 TraesCS3A01G059900 chr3B 81.618 136 14 3 5539 5663 43735444 43735309 1.000000e-17 102.0
17 TraesCS3A01G059900 chr3D 87.750 1249 85 34 696 1908 26257318 26258534 0.000000e+00 1397.0
18 TraesCS3A01G059900 chr3D 88.451 1143 63 33 4249 5355 26260714 26261823 0.000000e+00 1315.0
19 TraesCS3A01G059900 chr3D 95.918 637 22 2 2476 3112 26259002 26259634 0.000000e+00 1029.0
20 TraesCS3A01G059900 chr3D 89.681 659 25 19 3301 3931 26259734 26260377 0.000000e+00 800.0
21 TraesCS3A01G059900 chr3D 94.819 386 17 2 2474 2859 413346013 413345631 2.920000e-167 599.0
22 TraesCS3A01G059900 chr3D 79.342 760 74 39 4829 5541 26211149 26210426 1.860000e-124 457.0
23 TraesCS3A01G059900 chr3D 88.288 333 20 8 1 322 26256801 26257125 1.150000e-101 381.0
24 TraesCS3A01G059900 chr3D 92.925 212 13 2 4014 4224 26260376 26260586 1.980000e-79 307.0
25 TraesCS3A01G059900 chr3D 86.380 279 24 9 2119 2395 413346274 413346008 5.550000e-75 292.0
26 TraesCS3A01G059900 chr3D 82.320 181 18 8 5372 5541 26261811 26261988 1.640000e-30 145.0
27 TraesCS3A01G059900 chr3D 100.000 65 0 0 327 391 26257164 26257228 2.770000e-23 121.0
28 TraesCS3A01G059900 chr3D 95.918 49 2 0 5614 5662 26210306 26210258 4.700000e-11 80.5
29 TraesCS3A01G059900 chr3D 97.222 36 0 1 3270 3305 26259632 26259666 6.130000e-05 60.2
30 TraesCS3A01G059900 chr1B 88.755 747 70 13 1263 2003 35062207 35062945 0.000000e+00 902.0
31 TraesCS3A01G059900 chr1B 93.850 374 22 1 2474 2846 50640841 50640468 3.830000e-156 562.0
32 TraesCS3A01G059900 chr1B 100.000 88 0 0 3930 4017 428624165 428624078 4.540000e-36 163.0
33 TraesCS3A01G059900 chr1B 82.286 175 21 7 854 1027 19017740 19017905 5.910000e-30 143.0
34 TraesCS3A01G059900 chr7D 86.164 730 70 18 1439 2151 508068452 508067737 0.000000e+00 760.0
35 TraesCS3A01G059900 chr7D 84.615 650 65 24 1753 2395 744933 745554 1.040000e-171 614.0
36 TraesCS3A01G059900 chr7D 93.523 386 24 1 2474 2859 745549 745933 1.770000e-159 573.0
37 TraesCS3A01G059900 chr7D 93.642 173 10 1 3110 3282 141292833 141292662 2.020000e-64 257.0
38 TraesCS3A01G059900 chr7D 93.143 175 11 1 3108 3282 339786933 339786760 7.280000e-64 255.0
39 TraesCS3A01G059900 chr7A 83.573 834 60 38 709 1497 658773497 658774298 0.000000e+00 710.0
40 TraesCS3A01G059900 chr7A 81.143 175 23 7 854 1027 151593886 151593721 1.280000e-26 132.0
41 TraesCS3A01G059900 chr7A 89.362 94 10 0 2383 2476 33885902 33885809 9.970000e-23 119.0
42 TraesCS3A01G059900 chr5B 84.686 653 68 18 1753 2395 702404322 702403692 1.730000e-174 623.0
43 TraesCS3A01G059900 chr5B 93.369 377 21 3 2474 2849 702403697 702403324 6.410000e-154 555.0
44 TraesCS3A01G059900 chr5B 95.050 101 4 1 3930 4029 70441541 70441441 2.110000e-34 158.0
45 TraesCS3A01G059900 chr5B 92.941 85 6 0 2391 2475 217907683 217907767 2.140000e-24 124.0
46 TraesCS3A01G059900 chr4A 84.065 615 65 23 1757 2359 50233048 50233641 3.830000e-156 562.0
47 TraesCS3A01G059900 chr4A 93.351 376 25 0 2474 2849 50233665 50234040 1.780000e-154 556.0
48 TraesCS3A01G059900 chr4A 94.737 171 7 1 3102 3272 637865123 637865291 1.210000e-66 265.0
49 TraesCS3A01G059900 chr4A 95.918 98 4 0 3929 4026 38740531 38740434 5.870000e-35 159.0
50 TraesCS3A01G059900 chr4A 90.698 86 8 0 2390 2475 618462173 618462258 1.290000e-21 115.0
51 TraesCS3A01G059900 chr6B 93.333 375 25 0 2474 2848 284283206 284283580 6.410000e-154 555.0
52 TraesCS3A01G059900 chr6B 86.431 339 35 10 1772 2107 50526087 50526417 1.500000e-95 361.0
53 TraesCS3A01G059900 chr6B 96.939 98 2 1 3923 4019 132894260 132894357 4.540000e-36 163.0
54 TraesCS3A01G059900 chr6B 90.476 84 8 0 2390 2473 707293578 707293661 1.670000e-20 111.0
55 TraesCS3A01G059900 chr4D 87.195 492 41 13 1669 2151 217219680 217219202 1.800000e-149 540.0
56 TraesCS3A01G059900 chr4D 82.955 176 18 9 854 1027 447221306 447221141 1.270000e-31 148.0
57 TraesCS3A01G059900 chr2B 86.136 339 36 10 1772 2107 686243973 686244303 6.980000e-94 355.0
58 TraesCS3A01G059900 chr2B 92.105 114 3 5 3924 4034 751263665 751263555 7.600000e-34 156.0
59 TraesCS3A01G059900 chr2D 93.048 187 10 3 3097 3281 33734735 33734920 2.600000e-68 270.0
60 TraesCS3A01G059900 chr2D 93.048 187 10 3 3097 3281 33735055 33735240 2.600000e-68 270.0
61 TraesCS3A01G059900 chr2D 93.678 174 9 2 3108 3281 81575087 81574916 5.630000e-65 259.0
62 TraesCS3A01G059900 chr2A 95.783 166 7 0 3107 3272 460903999 460904164 9.350000e-68 268.0
63 TraesCS3A01G059900 chr5A 95.210 167 8 0 3108 3274 376346765 376346931 1.210000e-66 265.0
64 TraesCS3A01G059900 chr5A 90.476 84 8 0 2391 2474 427829078 427829161 1.670000e-20 111.0
65 TraesCS3A01G059900 chr1D 94.186 172 9 1 3102 3272 37884075 37883904 1.560000e-65 261.0
66 TraesCS3A01G059900 chr1D 94.253 87 5 0 2389 2475 245893785 245893699 3.560000e-27 134.0
67 TraesCS3A01G059900 chr1A 98.901 91 1 0 3925 4015 547849178 547849088 4.540000e-36 163.0
68 TraesCS3A01G059900 chr1A 91.111 90 4 4 2389 2476 58290340 58290427 9.970000e-23 119.0
69 TraesCS3A01G059900 chr1A 89.773 88 8 1 2389 2475 45583297 45583210 1.670000e-20 111.0
70 TraesCS3A01G059900 chr4B 96.809 94 3 0 3930 4023 6009933 6010026 2.110000e-34 158.0
71 TraesCS3A01G059900 chr5D 81.714 175 22 9 854 1027 16575011 16574846 2.750000e-28 137.0
72 TraesCS3A01G059900 chr5D 81.250 176 21 7 854 1027 398035164 398035329 1.280000e-26 132.0
73 TraesCS3A01G059900 chr5D 94.118 85 5 0 2391 2475 188826535 188826619 4.600000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G059900 chr3A 36228104 36233766 5662 True 4949.000000 9175 100.000000 1 5663 2 chr3A.!!$R2 5662
1 TraesCS3A01G059900 chr3A 667987600 667988405 805 False 697.000000 697 83.155000 705 1505 1 chr3A.!!$F1 800
2 TraesCS3A01G059900 chr3A 36191375 36191930 555 True 523.000000 523 84.779000 4829 5355 1 chr3A.!!$R1 526
3 TraesCS3A01G059900 chr3B 43735309 43740563 5254 True 679.875000 1947 87.685125 136 5663 8 chr3B.!!$R2 5527
4 TraesCS3A01G059900 chr3B 222545390 222546019 629 False 638.000000 638 85.077000 1753 2395 1 chr3B.!!$F2 642
5 TraesCS3A01G059900 chr3B 238018394 238019190 796 False 496.000000 568 89.345000 1956 2849 2 chr3B.!!$F3 893
6 TraesCS3A01G059900 chr3D 26256801 26261988 5187 False 617.244444 1397 91.395000 1 5541 9 chr3D.!!$F1 5540
7 TraesCS3A01G059900 chr3D 413345631 413346274 643 True 445.500000 599 90.599500 2119 2859 2 chr3D.!!$R2 740
8 TraesCS3A01G059900 chr3D 26210258 26211149 891 True 268.750000 457 87.630000 4829 5662 2 chr3D.!!$R1 833
9 TraesCS3A01G059900 chr1B 35062207 35062945 738 False 902.000000 902 88.755000 1263 2003 1 chr1B.!!$F2 740
10 TraesCS3A01G059900 chr7D 508067737 508068452 715 True 760.000000 760 86.164000 1439 2151 1 chr7D.!!$R3 712
11 TraesCS3A01G059900 chr7D 744933 745933 1000 False 593.500000 614 89.069000 1753 2859 2 chr7D.!!$F1 1106
12 TraesCS3A01G059900 chr7A 658773497 658774298 801 False 710.000000 710 83.573000 709 1497 1 chr7A.!!$F1 788
13 TraesCS3A01G059900 chr5B 702403324 702404322 998 True 589.000000 623 89.027500 1753 2849 2 chr5B.!!$R2 1096
14 TraesCS3A01G059900 chr4A 50233048 50234040 992 False 559.000000 562 88.708000 1757 2849 2 chr4A.!!$F3 1092
15 TraesCS3A01G059900 chr2D 33734735 33735240 505 False 270.000000 270 93.048000 3097 3281 2 chr2D.!!$F1 184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 950 0.169009 GGGCTGTTTCAATCTGACGC 59.831 55.0 0.00 0.00 0.00 5.19 F
1195 1269 0.035317 TGGCTGAATGCTCAAGACGT 59.965 50.0 0.00 0.00 42.39 4.34 F
2409 2659 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.0 0.00 0.00 0.00 2.71 F
3909 4263 0.102481 CTTCTCATTGCTGGCATGGC 59.898 55.0 13.29 13.29 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1822 0.039618 AGTTACACCTGGCCATTGGG 59.960 55.000 15.16 11.71 37.18 4.12 R
2459 2709 0.635009 AAGATACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37 R
4078 4510 1.613437 CCTTTTTGGGTCACGAGCATT 59.387 47.619 0.00 0.00 0.00 3.56 R
5611 6492 0.384669 GCAGCAAGCCTTCCATGATC 59.615 55.000 0.00 0.00 37.23 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.669760 TTGACCGGGTCAACGCATC 60.670 57.895 33.05 4.94 45.88 3.91
116 128 4.514577 CCAGCGAGCCGACGGAAT 62.515 66.667 20.50 4.61 0.00 3.01
117 129 3.257561 CAGCGAGCCGACGGAATG 61.258 66.667 20.50 6.70 0.00 2.67
118 130 4.514577 AGCGAGCCGACGGAATGG 62.515 66.667 20.50 7.64 0.00 3.16
119 131 4.508128 GCGAGCCGACGGAATGGA 62.508 66.667 20.50 0.00 0.00 3.41
120 132 2.183300 CGAGCCGACGGAATGGAA 59.817 61.111 20.50 0.00 0.00 3.53
246 258 4.169696 CCGCCCCGCACTAATCCA 62.170 66.667 0.00 0.00 0.00 3.41
295 308 3.422655 GGCACGATAACAAAACCGATTC 58.577 45.455 0.00 0.00 0.00 2.52
714 761 4.377263 GGTACCCACCCTCTCCTC 57.623 66.667 0.00 0.00 39.11 3.71
814 863 2.419198 GCCGATCGATCTGCCTGT 59.581 61.111 26.04 0.00 31.84 4.00
876 925 6.863275 AGTTGGTTTCTCTTAGGTTTTTGTG 58.137 36.000 0.00 0.00 0.00 3.33
900 949 0.443869 CGGGCTGTTTCAATCTGACG 59.556 55.000 0.00 0.00 0.00 4.35
901 950 0.169009 GGGCTGTTTCAATCTGACGC 59.831 55.000 0.00 0.00 0.00 5.19
949 1002 0.759060 GAGGGAGAGGGGAGAAGCTC 60.759 65.000 0.00 0.00 0.00 4.09
1136 1189 0.111639 GCCCTGGTAACCACCTTTCA 59.888 55.000 0.00 0.00 45.98 2.69
1145 1198 0.701310 ACCACCTTTCACCCCCTCTT 60.701 55.000 0.00 0.00 0.00 2.85
1155 1208 2.042435 CCCCTCTTCTCCCTCGCT 60.042 66.667 0.00 0.00 0.00 4.93
1156 1209 1.230497 CCCCTCTTCTCCCTCGCTA 59.770 63.158 0.00 0.00 0.00 4.26
1166 1219 1.032657 TCCCTCGCTAGAGTGCTGAC 61.033 60.000 0.00 0.00 42.86 3.51
1169 1222 1.987704 CTCGCTAGAGTGCTGACGCT 61.988 60.000 0.00 0.00 39.60 5.07
1188 1262 2.669364 CTGTTGTTTGGCTGAATGCTC 58.331 47.619 0.00 0.00 42.39 4.26
1190 1264 2.429971 TGTTGTTTGGCTGAATGCTCAA 59.570 40.909 0.00 0.00 42.39 3.02
1195 1269 0.035317 TGGCTGAATGCTCAAGACGT 59.965 50.000 0.00 0.00 42.39 4.34
1207 1281 0.236711 CAAGACGTTTCTGCTGCTGG 59.763 55.000 6.69 0.00 29.98 4.85
1291 1378 1.072173 GGGTTGCAAATTCCCAGCTTT 59.928 47.619 16.75 0.00 40.79 3.51
1303 1390 0.110373 CCAGCTTTGGTACGCGTTTC 60.110 55.000 20.78 11.57 0.00 2.78
1358 1446 2.584236 TGCAAAATGGCTGGCAAAATT 58.416 38.095 8.35 1.15 32.54 1.82
1359 1447 2.957006 TGCAAAATGGCTGGCAAAATTT 59.043 36.364 8.35 7.51 32.54 1.82
1388 1477 1.796459 GCCATGAAAGCAGCTTTGTTG 59.204 47.619 25.40 19.39 33.49 3.33
1418 1517 3.136763 TCTGCTCTGCTTTCAACTGAAG 58.863 45.455 0.00 0.00 35.21 3.02
1451 1554 3.448686 AGCGAGTCGATACTGAATTTGG 58.551 45.455 18.61 0.00 35.56 3.28
1459 1562 6.098409 AGTCGATACTGAATTTGGGAGTATGT 59.902 38.462 0.00 0.00 33.89 2.29
1480 1583 6.875948 TGTGTGCTTGTAGTGATGTTATTT 57.124 33.333 0.00 0.00 0.00 1.40
1527 1633 9.326413 GAGTTGTATTGTACCTGCTGTTTATAT 57.674 33.333 0.00 0.00 0.00 0.86
1565 1671 9.840427 ATCCACACTTTATTCGAAAATAAACTG 57.160 29.630 0.00 5.79 40.65 3.16
1581 1689 9.612066 AAAATAAACTGGTTGTCACATTCAAAT 57.388 25.926 0.00 0.00 0.00 2.32
1609 1717 5.945144 TGGGGTTTCTAGGACTGTTATAC 57.055 43.478 0.00 0.00 0.00 1.47
1627 1735 9.784680 CTGTTATACGGTGTTATGGATATACTC 57.215 37.037 0.00 0.00 0.00 2.59
1658 1766 2.234908 AGTTACTGATCTGTGGTCTGGC 59.765 50.000 14.91 0.00 0.00 4.85
1713 1822 9.490379 TCTAATACTTCTTGTTTGACTCTTTCC 57.510 33.333 0.00 0.00 0.00 3.13
1813 1922 0.670546 CCGTGTGTCAAGCCGAATCT 60.671 55.000 0.00 0.00 0.00 2.40
1871 1987 4.922206 TGAATTATGCCTCCTGAACTTGT 58.078 39.130 0.00 0.00 0.00 3.16
1882 1998 4.894784 TCCTGAACTTGTGAGTTGGATAC 58.105 43.478 0.00 0.00 45.88 2.24
1888 2013 3.807622 ACTTGTGAGTTGGATACGTTGTG 59.192 43.478 0.00 0.00 42.51 3.33
1891 2016 3.805422 TGTGAGTTGGATACGTTGTGAAC 59.195 43.478 0.00 0.00 42.51 3.18
1929 2055 3.875134 TCGAAACTGTTCCCTTTTCTGTC 59.125 43.478 0.00 0.00 0.00 3.51
1932 2058 3.933861 ACTGTTCCCTTTTCTGTCTGT 57.066 42.857 0.00 0.00 0.00 3.41
1983 2113 5.053145 TGTGCAGTTGTTTGTTTCAAACTT 58.947 33.333 20.66 8.48 0.00 2.66
2132 2277 2.137692 GGAGTGTCCTGGGCCTATC 58.862 63.158 4.53 0.00 32.53 2.08
2148 2293 3.950395 GCCTATCCTGCATTTTGACTCTT 59.050 43.478 0.00 0.00 0.00 2.85
2149 2294 5.126067 GCCTATCCTGCATTTTGACTCTTA 58.874 41.667 0.00 0.00 0.00 2.10
2150 2295 5.767168 GCCTATCCTGCATTTTGACTCTTAT 59.233 40.000 0.00 0.00 0.00 1.73
2180 2325 3.244561 TGTTCTTCCAGCCTCCTAGTTTG 60.245 47.826 0.00 0.00 0.00 2.93
2188 2333 5.010282 CCAGCCTCCTAGTTTGTTTGTTAT 58.990 41.667 0.00 0.00 0.00 1.89
2189 2334 6.013206 TCCAGCCTCCTAGTTTGTTTGTTATA 60.013 38.462 0.00 0.00 0.00 0.98
2227 2477 9.331282 AGTTTTCATTAGGAGATGTAATAGTGC 57.669 33.333 0.00 0.00 0.00 4.40
2260 2510 9.520204 AATTATTAATATGCTCACACAACAAGC 57.480 29.630 0.00 0.00 36.56 4.01
2297 2547 4.915085 CCAACATAATTTTGTCGTGTGGTC 59.085 41.667 1.83 0.00 0.00 4.02
2298 2548 5.278266 CCAACATAATTTTGTCGTGTGGTCT 60.278 40.000 1.83 0.00 0.00 3.85
2299 2549 5.356882 ACATAATTTTGTCGTGTGGTCTG 57.643 39.130 0.00 0.00 0.00 3.51
2348 2598 9.529325 TCCTTGTTTACTCTGTTATCATAATCG 57.471 33.333 0.00 0.00 0.00 3.34
2396 2646 8.496916 TCCCCAAAGTTATAATAAACTACTCCC 58.503 37.037 0.00 0.00 38.76 4.30
2397 2647 8.500238 CCCCAAAGTTATAATAAACTACTCCCT 58.500 37.037 0.00 0.00 38.76 4.20
2398 2648 9.557061 CCCAAAGTTATAATAAACTACTCCCTC 57.443 37.037 0.00 0.00 38.76 4.30
2399 2649 9.557061 CCAAAGTTATAATAAACTACTCCCTCC 57.443 37.037 0.00 0.00 38.76 4.30
2400 2650 9.257651 CAAAGTTATAATAAACTACTCCCTCCG 57.742 37.037 0.00 0.00 38.76 4.63
2401 2651 8.544687 AAGTTATAATAAACTACTCCCTCCGT 57.455 34.615 0.00 0.00 38.76 4.69
2402 2652 8.175925 AGTTATAATAAACTACTCCCTCCGTC 57.824 38.462 0.00 0.00 37.93 4.79
2403 2653 7.232330 AGTTATAATAAACTACTCCCTCCGTCC 59.768 40.741 0.00 0.00 37.93 4.79
2404 2654 2.149973 TAAACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
2405 2655 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2406 2656 0.614134 AACTACTCCCTCCGTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
2407 2657 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
2408 2658 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
2409 2659 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
2410 2660 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
2411 2661 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
2412 2662 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
2413 2663 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
2414 2664 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
2415 2665 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2416 2666 3.244112 CCCTCCGTCCCACAATATAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2417 2667 3.386726 CCTCCGTCCCACAATATAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
2418 2668 4.369182 CTCCGTCCCACAATATAAGACAC 58.631 47.826 0.00 0.00 0.00 3.67
2419 2669 4.028131 TCCGTCCCACAATATAAGACACT 58.972 43.478 0.00 0.00 0.00 3.55
2420 2670 4.468510 TCCGTCCCACAATATAAGACACTT 59.531 41.667 0.00 0.00 0.00 3.16
2421 2671 5.046159 TCCGTCCCACAATATAAGACACTTT 60.046 40.000 0.00 0.00 0.00 2.66
2422 2672 5.646360 CCGTCCCACAATATAAGACACTTTT 59.354 40.000 0.00 0.00 0.00 2.27
2423 2673 6.819649 CCGTCCCACAATATAAGACACTTTTA 59.180 38.462 0.00 0.00 0.00 1.52
2424 2674 7.497909 CCGTCCCACAATATAAGACACTTTTAT 59.502 37.037 0.00 0.00 0.00 1.40
2425 2675 9.537192 CGTCCCACAATATAAGACACTTTTATA 57.463 33.333 0.00 0.00 0.00 0.98
2448 2698 6.747659 AAGTTATGTTAGCTTGCAAAAACG 57.252 33.333 0.00 0.00 0.00 3.60
2449 2699 5.827666 AGTTATGTTAGCTTGCAAAAACGT 58.172 33.333 14.52 14.52 0.00 3.99
2450 2700 5.912955 AGTTATGTTAGCTTGCAAAAACGTC 59.087 36.000 13.85 5.12 0.00 4.34
2451 2701 4.568152 ATGTTAGCTTGCAAAAACGTCT 57.432 36.364 0.00 0.00 0.00 4.18
2452 2702 4.364415 TGTTAGCTTGCAAAAACGTCTT 57.636 36.364 0.00 0.00 0.00 3.01
2453 2703 5.487153 TGTTAGCTTGCAAAAACGTCTTA 57.513 34.783 0.00 0.00 0.00 2.10
2454 2704 6.067263 TGTTAGCTTGCAAAAACGTCTTAT 57.933 33.333 0.00 0.00 0.00 1.73
2455 2705 7.192148 TGTTAGCTTGCAAAAACGTCTTATA 57.808 32.000 0.00 0.00 0.00 0.98
2456 2706 7.073265 TGTTAGCTTGCAAAAACGTCTTATAC 58.927 34.615 0.00 0.00 0.00 1.47
2457 2707 5.941948 AGCTTGCAAAAACGTCTTATACT 57.058 34.783 0.00 0.00 0.00 2.12
2458 2708 8.437742 GTTAGCTTGCAAAAACGTCTTATACTA 58.562 33.333 0.00 0.00 0.00 1.82
2459 2709 7.611213 AGCTTGCAAAAACGTCTTATACTAT 57.389 32.000 0.00 0.00 0.00 2.12
2460 2710 7.464358 AGCTTGCAAAAACGTCTTATACTATG 58.536 34.615 0.00 0.00 0.00 2.23
2461 2711 6.687105 GCTTGCAAAAACGTCTTATACTATGG 59.313 38.462 0.00 0.00 0.00 2.74
2462 2712 6.671614 TGCAAAAACGTCTTATACTATGGG 57.328 37.500 0.00 0.00 0.00 4.00
2463 2713 6.408035 TGCAAAAACGTCTTATACTATGGGA 58.592 36.000 0.00 0.00 0.00 4.37
2464 2714 6.314400 TGCAAAAACGTCTTATACTATGGGAC 59.686 38.462 0.00 0.00 0.00 4.46
2468 2718 4.681835 CGTCTTATACTATGGGACGGAG 57.318 50.000 13.34 0.00 43.69 4.63
2469 2719 3.439476 CGTCTTATACTATGGGACGGAGG 59.561 52.174 13.34 0.00 43.69 4.30
2470 2720 3.762823 GTCTTATACTATGGGACGGAGGG 59.237 52.174 0.00 0.00 0.00 4.30
2471 2721 3.659195 TCTTATACTATGGGACGGAGGGA 59.341 47.826 0.00 0.00 0.00 4.20
2472 2722 2.606751 ATACTATGGGACGGAGGGAG 57.393 55.000 0.00 0.00 0.00 4.30
2473 2723 1.229131 TACTATGGGACGGAGGGAGT 58.771 55.000 0.00 0.00 0.00 3.85
2474 2724 1.229131 ACTATGGGACGGAGGGAGTA 58.771 55.000 0.00 0.00 0.00 2.59
2478 2728 0.635009 TGGGACGGAGGGAGTATCTT 59.365 55.000 0.00 0.00 33.73 2.40
2555 2805 4.763793 CCTGGTCTTCAGTGAACATTGATT 59.236 41.667 0.08 0.00 41.83 2.57
2700 2950 5.413833 AGGTTCTTGCACATCAGAAGTTATG 59.586 40.000 0.00 0.00 0.00 1.90
3000 3250 5.690865 AGGTATCTGAACAAAACACTTCCA 58.309 37.500 0.00 0.00 0.00 3.53
3054 3304 9.099454 CTTGTTATCTTTACTGGTATGTCCTTC 57.901 37.037 0.00 0.00 37.07 3.46
3141 3391 8.202137 CCTCCGTTCCTAAATATAAGTCTTTGA 58.798 37.037 0.00 0.00 0.00 2.69
3232 3482 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
3237 3487 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
3245 3495 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
3376 3699 9.845740 AATCCTTTTTATTTACTTTTGCCTTGT 57.154 25.926 0.00 0.00 0.00 3.16
3379 3702 8.556194 CCTTTTTATTTACTTTTGCCTTGTTCC 58.444 33.333 0.00 0.00 0.00 3.62
3380 3703 9.325198 CTTTTTATTTACTTTTGCCTTGTTCCT 57.675 29.630 0.00 0.00 0.00 3.36
3381 3704 8.655651 TTTTATTTACTTTTGCCTTGTTCCTG 57.344 30.769 0.00 0.00 0.00 3.86
3382 3705 3.726291 TTACTTTTGCCTTGTTCCTGC 57.274 42.857 0.00 0.00 0.00 4.85
3383 3706 0.752658 ACTTTTGCCTTGTTCCTGCC 59.247 50.000 0.00 0.00 0.00 4.85
3438 3761 8.368668 CCCCTCGAACTTATTTCTGATAATACT 58.631 37.037 0.00 0.00 31.20 2.12
3524 3857 9.509956 GACCACTAGTTGAGTATATCTGTAGAT 57.490 37.037 0.08 0.00 35.64 1.98
3583 3916 9.118236 CAAATCAAATCTTTAGTTCCTTCGTTC 57.882 33.333 0.00 0.00 0.00 3.95
3585 3918 5.407387 TCAAATCTTTAGTTCCTTCGTTCCG 59.593 40.000 0.00 0.00 0.00 4.30
3599 3932 5.686397 CCTTCGTTCCGAGTATAGATGTTTC 59.314 44.000 0.00 0.00 37.14 2.78
3628 3961 4.584327 ATTGGTGCCAAACTGTAGAAAC 57.416 40.909 7.81 0.00 39.55 2.78
3642 3975 3.477224 GAAACTTTGGCCGCGCACA 62.477 57.895 8.75 0.00 0.00 4.57
3654 3987 1.805254 GCGCACATCCTGAAATGCT 59.195 52.632 0.30 0.00 35.88 3.79
3690 4042 4.748277 TGTTGGGGAATAGTAGTACAGC 57.252 45.455 2.52 0.00 0.00 4.40
3909 4263 0.102481 CTTCTCATTGCTGGCATGGC 59.898 55.000 13.29 13.29 0.00 4.40
3944 4298 0.410663 TTCCTACTCCCTCCGTTCCA 59.589 55.000 0.00 0.00 0.00 3.53
3950 4304 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3952 4306 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3954 4308 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3956 4310 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3957 4311 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3958 4312 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3959 4313 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3960 4314 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
3961 4315 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
3962 4316 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
3963 4317 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3965 4319 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3966 4320 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3968 4322 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
3973 4327 9.975218 ATAGATGACCCAACTTTGTATTAAAGT 57.025 29.630 0.00 0.00 41.82 2.66
3975 4329 9.802039 AGATGACCCAACTTTGTATTAAAGTTA 57.198 29.630 15.03 3.25 45.57 2.24
3977 4331 8.983702 TGACCCAACTTTGTATTAAAGTTAGT 57.016 30.769 15.03 14.80 45.57 2.24
4077 4509 9.160496 TCAAGCTAAAACAAATTGAACACATTT 57.840 25.926 0.00 0.00 0.00 2.32
4136 4568 4.163458 ACTGAAGAGTTCTGTGTTTACCCA 59.837 41.667 0.00 0.00 39.86 4.51
4141 4639 5.805728 AGAGTTCTGTGTTTACCCAATAGG 58.194 41.667 0.00 0.00 43.78 2.57
4157 4655 5.132144 CCCAATAGGTTAATAGTCACCCAGT 59.868 44.000 0.00 0.00 32.92 4.00
4179 4677 2.772077 TCCGTGCTTATGCTTTACCA 57.228 45.000 1.96 0.00 40.48 3.25
4184 4682 4.351192 CGTGCTTATGCTTTACCAAATCC 58.649 43.478 1.96 0.00 40.48 3.01
4189 4687 5.734503 GCTTATGCTTTACCAAATCCTGCTC 60.735 44.000 0.00 0.00 36.03 4.26
4202 4701 4.978083 ATCCTGCTCATGTGACATTTTC 57.022 40.909 0.00 0.00 0.00 2.29
4218 4717 9.385902 GTGACATTTTCATGTTTGGATATATCG 57.614 33.333 6.64 0.00 44.22 2.92
4224 4723 7.742556 TTCATGTTTGGATATATCGCATCAA 57.257 32.000 6.64 2.82 0.00 2.57
4225 4724 7.926674 TCATGTTTGGATATATCGCATCAAT 57.073 32.000 6.64 0.00 0.00 2.57
4227 4726 8.882736 TCATGTTTGGATATATCGCATCAATAC 58.117 33.333 6.64 7.03 0.00 1.89
4230 4729 9.230122 TGTTTGGATATATCGCATCAATACATT 57.770 29.630 6.64 0.00 0.00 2.71
4295 4898 2.368548 TCTGACCTACTGTGTTGCACAT 59.631 45.455 2.25 0.00 43.71 3.21
4300 4903 2.481568 CCTACTGTGTTGCACATCAGTG 59.518 50.000 20.10 12.86 43.71 3.66
4359 4962 6.430616 TGTGCTATTGATTGTGAGATTTGTCA 59.569 34.615 0.00 0.00 0.00 3.58
4364 4967 9.376075 CTATTGATTGTGAGATTTGTCAGTAGT 57.624 33.333 0.00 0.00 0.00 2.73
4367 4970 6.813649 TGATTGTGAGATTTGTCAGTAGTAGC 59.186 38.462 0.00 0.00 0.00 3.58
4370 4973 5.476945 TGTGAGATTTGTCAGTAGTAGCTGA 59.523 40.000 0.00 0.00 42.56 4.26
4392 5000 4.944962 TGTAGTGCAAGTATTCACATGC 57.055 40.909 0.00 0.00 46.92 4.06
4412 5020 7.601886 CACATGCTCCAGAACCTATAGAATAAG 59.398 40.741 0.00 0.00 0.00 1.73
4413 5021 6.672266 TGCTCCAGAACCTATAGAATAAGG 57.328 41.667 0.00 0.00 38.93 2.69
4414 5022 6.382087 TGCTCCAGAACCTATAGAATAAGGA 58.618 40.000 0.00 2.54 36.66 3.36
4415 5023 6.844388 TGCTCCAGAACCTATAGAATAAGGAA 59.156 38.462 0.00 0.00 36.66 3.36
4450 5058 6.317140 TGAAGGCTGTGAAATTCTGATGATAC 59.683 38.462 0.00 0.00 0.00 2.24
4456 5064 8.457261 GCTGTGAAATTCTGATGATACTTTTCT 58.543 33.333 0.00 0.00 0.00 2.52
4465 5073 6.385176 TCTGATGATACTTTTCTGATCCAGGT 59.615 38.462 0.00 0.00 31.51 4.00
4470 5078 4.013267 ACTTTTCTGATCCAGGTGACAG 57.987 45.455 0.00 0.00 31.51 3.51
4488 5104 2.435805 ACAGAGAGCCTTGACTGACAAA 59.564 45.455 0.00 0.00 38.08 2.83
4578 5194 2.027377 CCAGACAGGCTTGACAGAGAAT 60.027 50.000 1.40 0.00 0.00 2.40
4608 5224 2.645838 TGAAGAAGTTTGAGCAGGCT 57.354 45.000 0.00 0.00 0.00 4.58
4746 5376 1.678970 GCAATATCATCCCCCGCCC 60.679 63.158 0.00 0.00 0.00 6.13
4763 5393 1.079543 CCACTCTGTGCGGAGGAAG 60.080 63.158 12.12 2.66 37.63 3.46
4888 5522 6.318648 TGTGTTATTATTAAGCAAGGCCAGAG 59.681 38.462 5.01 0.00 0.00 3.35
4928 5562 6.085979 CGAGAACTTTACTACACTGTTGTACG 59.914 42.308 3.31 1.78 37.15 3.67
4996 5632 3.320626 CTGATTGTCATGTGTCGTGTCT 58.679 45.455 0.00 0.00 0.00 3.41
5000 5640 3.452755 TGTCATGTGTCGTGTCTCTTT 57.547 42.857 0.00 0.00 0.00 2.52
5001 5641 3.381045 TGTCATGTGTCGTGTCTCTTTC 58.619 45.455 0.00 0.00 0.00 2.62
5002 5642 3.068165 TGTCATGTGTCGTGTCTCTTTCT 59.932 43.478 0.00 0.00 0.00 2.52
5003 5643 4.051922 GTCATGTGTCGTGTCTCTTTCTT 58.948 43.478 0.00 0.00 0.00 2.52
5091 5874 9.391006 GTCTACCAGACATAGGATTAGAGATAG 57.609 40.741 1.46 0.00 44.45 2.08
5092 5875 9.118367 TCTACCAGACATAGGATTAGAGATAGT 57.882 37.037 0.00 0.00 0.00 2.12
5149 5941 7.814587 GTCCTAATTTGAAGCTTTGCTAACAAT 59.185 33.333 0.00 0.00 38.25 2.71
5150 5942 8.367156 TCCTAATTTGAAGCTTTGCTAACAATT 58.633 29.630 0.00 1.31 38.25 2.32
5152 5944 5.655893 TTTGAAGCTTTGCTAACAATTGC 57.344 34.783 5.05 0.00 38.25 3.56
5154 5946 3.243367 TGAAGCTTTGCTAACAATTGCGT 60.243 39.130 5.05 0.00 38.25 5.24
5158 5950 6.189677 AGCTTTGCTAACAATTGCGTATAA 57.810 33.333 5.05 0.00 39.26 0.98
5166 5959 6.687105 GCTAACAATTGCGTATAAGAAACAGG 59.313 38.462 5.05 0.00 0.00 4.00
5167 5960 6.811253 AACAATTGCGTATAAGAAACAGGA 57.189 33.333 5.05 0.00 0.00 3.86
5177 5970 6.537301 CGTATAAGAAACAGGAAGGCATAACA 59.463 38.462 0.00 0.00 0.00 2.41
5223 6031 3.930229 GGTCCTTTGTTTTCAAACCACAC 59.070 43.478 0.00 0.00 43.72 3.82
5238 6050 8.958119 TCAAACCACACCTCTGTATTATATTC 57.042 34.615 0.00 0.00 0.00 1.75
5289 6101 6.070824 ACCAGAACCAACAGATTTGTTCTTTT 60.071 34.615 0.00 0.00 44.40 2.27
5342 6158 5.738619 TTCCATACCTGTCGCATACATAT 57.261 39.130 0.00 0.00 37.50 1.78
5343 6159 5.072040 TCCATACCTGTCGCATACATATG 57.928 43.478 0.00 0.00 37.50 1.78
5344 6160 4.770010 TCCATACCTGTCGCATACATATGA 59.230 41.667 10.38 0.00 34.82 2.15
5345 6161 5.245075 TCCATACCTGTCGCATACATATGAA 59.755 40.000 10.38 0.00 34.82 2.57
5346 6162 5.931724 CCATACCTGTCGCATACATATGAAA 59.068 40.000 10.38 0.00 34.82 2.69
5347 6163 6.595326 CCATACCTGTCGCATACATATGAAAT 59.405 38.462 10.38 0.00 34.82 2.17
5348 6164 7.119699 CCATACCTGTCGCATACATATGAAATT 59.880 37.037 10.38 0.00 34.82 1.82
5349 6165 6.304356 ACCTGTCGCATACATATGAAATTG 57.696 37.500 10.38 2.51 37.50 2.32
5350 6166 5.149273 CCTGTCGCATACATATGAAATTGC 58.851 41.667 10.38 10.98 37.50 3.56
5351 6167 5.277925 CCTGTCGCATACATATGAAATTGCA 60.278 40.000 10.38 0.00 37.50 4.08
5352 6168 6.316440 TGTCGCATACATATGAAATTGCAT 57.684 33.333 10.38 3.88 35.75 3.96
5353 6169 6.372981 TGTCGCATACATATGAAATTGCATC 58.627 36.000 10.38 8.41 35.75 3.91
5354 6170 6.205270 TGTCGCATACATATGAAATTGCATCT 59.795 34.615 10.38 0.00 35.75 2.90
5355 6171 6.522165 GTCGCATACATATGAAATTGCATCTG 59.478 38.462 10.38 6.21 35.75 2.90
5356 6172 6.427547 TCGCATACATATGAAATTGCATCTGA 59.572 34.615 16.63 3.48 35.75 3.27
5357 6173 7.120138 TCGCATACATATGAAATTGCATCTGAT 59.880 33.333 16.63 5.30 35.75 2.90
5358 6174 7.753580 CGCATACATATGAAATTGCATCTGATT 59.246 33.333 16.63 3.07 35.75 2.57
5416 6232 2.267174 AGTGCAGACATCAACTTGCT 57.733 45.000 0.00 0.00 0.00 3.91
5434 6255 5.916883 ACTTGCTCTCACAAAATTCATTTCG 59.083 36.000 0.00 0.00 0.00 3.46
5437 6258 5.008514 TGCTCTCACAAAATTCATTTCGTCA 59.991 36.000 0.00 0.00 0.00 4.35
5439 6260 6.129352 GCTCTCACAAAATTCATTTCGTCAAC 60.129 38.462 0.00 0.00 0.00 3.18
5442 6263 6.790282 TCACAAAATTCATTTCGTCAACAGA 58.210 32.000 0.00 0.00 0.00 3.41
5466 6290 0.683828 TGCAACCCATCGCCATCATT 60.684 50.000 0.00 0.00 0.00 2.57
5471 6295 3.726557 ACCCATCGCCATCATTATCAT 57.273 42.857 0.00 0.00 0.00 2.45
5473 6297 3.009363 ACCCATCGCCATCATTATCATCA 59.991 43.478 0.00 0.00 0.00 3.07
5474 6298 3.376234 CCCATCGCCATCATTATCATCAC 59.624 47.826 0.00 0.00 0.00 3.06
5475 6299 3.063045 CCATCGCCATCATTATCATCACG 59.937 47.826 0.00 0.00 0.00 4.35
5476 6300 3.658757 TCGCCATCATTATCATCACGA 57.341 42.857 0.00 0.00 0.00 4.35
5477 6301 3.578688 TCGCCATCATTATCATCACGAG 58.421 45.455 0.00 0.00 0.00 4.18
5478 6302 3.005791 TCGCCATCATTATCATCACGAGT 59.994 43.478 0.00 0.00 0.00 4.18
5479 6303 3.122445 CGCCATCATTATCATCACGAGTG 59.878 47.826 0.00 0.00 0.00 3.51
5480 6304 4.060900 GCCATCATTATCATCACGAGTGT 58.939 43.478 2.97 0.00 0.00 3.55
5499 6326 4.082679 AGTGTGTCCTCTCGTTGACTAATC 60.083 45.833 0.00 0.00 32.67 1.75
5505 6332 4.158025 TCCTCTCGTTGACTAATCCAGTTC 59.842 45.833 0.00 0.00 37.72 3.01
5512 6339 1.666189 GACTAATCCAGTTCGCAAGCC 59.334 52.381 0.00 0.00 37.72 4.35
5513 6340 0.652592 CTAATCCAGTTCGCAAGCCG 59.347 55.000 0.00 0.00 38.61 5.52
5555 6436 5.516945 CCACTAACCTGTTTATAAACCCCCA 60.517 44.000 22.47 6.07 38.11 4.96
5558 6439 7.835181 CACTAACCTGTTTATAAACCCCCATAA 59.165 37.037 22.47 4.39 38.11 1.90
5566 6447 9.327731 TGTTTATAAACCCCCATAAAACAATCT 57.672 29.630 22.47 0.00 38.11 2.40
5567 6448 9.594478 GTTTATAAACCCCCATAAAACAATCTG 57.406 33.333 16.14 0.00 30.56 2.90
5575 6456 4.381932 CCCATAAAACAATCTGTTGCCTCC 60.382 45.833 0.00 0.00 40.14 4.30
5588 6469 0.625849 TGCCTCCATCCTTTCCTTCC 59.374 55.000 0.00 0.00 0.00 3.46
5590 6471 0.912486 CCTCCATCCTTTCCTTCCGT 59.088 55.000 0.00 0.00 0.00 4.69
5595 6476 2.211468 ATCCTTTCCTTCCGTGCCCC 62.211 60.000 0.00 0.00 0.00 5.80
5603 6484 1.420138 CCTTCCGTGCCCCTATACAAT 59.580 52.381 0.00 0.00 0.00 2.71
5605 6486 3.556423 CCTTCCGTGCCCCTATACAATAC 60.556 52.174 0.00 0.00 0.00 1.89
5606 6487 2.680251 TCCGTGCCCCTATACAATACA 58.320 47.619 0.00 0.00 0.00 2.29
5607 6488 2.366266 TCCGTGCCCCTATACAATACAC 59.634 50.000 0.00 0.00 0.00 2.90
5610 6491 3.807622 CGTGCCCCTATACAATACACAAG 59.192 47.826 0.00 0.00 0.00 3.16
5611 6492 4.134563 GTGCCCCTATACAATACACAAGG 58.865 47.826 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.188786 CAGCTAGGCCGCGTCAAC 61.189 66.667 4.92 0.00 34.40 3.18
57 69 4.603535 GCCCAACCCACACCAGCT 62.604 66.667 0.00 0.00 0.00 4.24
104 116 1.161843 TTTTTCCATTCCGTCGGCTC 58.838 50.000 6.34 0.00 0.00 4.70
105 117 3.332706 TTTTTCCATTCCGTCGGCT 57.667 47.368 6.34 0.00 0.00 5.52
232 244 2.203015 CCGTGGATTAGTGCGGGG 60.203 66.667 0.00 0.00 40.45 5.73
270 282 1.323791 GTTTTGTTATCGTGCCGCAC 58.676 50.000 13.81 13.81 0.00 5.34
284 296 1.165270 AAGAGCCCGAATCGGTTTTG 58.835 50.000 21.12 6.11 46.80 2.44
295 308 0.458025 GTCACGGAGTTAAGAGCCCG 60.458 60.000 0.00 0.00 41.61 6.13
299 312 2.416162 GGAGCTGTCACGGAGTTAAGAG 60.416 54.545 0.00 0.00 41.61 2.85
876 925 2.212900 GATTGAAACAGCCCGCACCC 62.213 60.000 0.00 0.00 0.00 4.61
974 1027 4.366684 CCTTGGTCCCCACCCTGC 62.367 72.222 0.00 0.00 42.99 4.85
1136 1189 2.364961 CGAGGGAGAAGAGGGGGT 59.635 66.667 0.00 0.00 0.00 4.95
1145 1198 0.749818 CAGCACTCTAGCGAGGGAGA 60.750 60.000 0.00 0.00 43.64 3.71
1166 1219 1.411394 CATTCAGCCAAACAACAGCG 58.589 50.000 0.00 0.00 0.00 5.18
1188 1262 0.236711 CCAGCAGCAGAAACGTCTTG 59.763 55.000 0.00 0.00 28.78 3.02
1190 1264 0.179045 AACCAGCAGCAGAAACGTCT 60.179 50.000 0.00 0.00 32.85 4.18
1195 1269 1.824230 ACAAACAACCAGCAGCAGAAA 59.176 42.857 0.00 0.00 0.00 2.52
1207 1281 4.462307 CCTGCAACAAACAAACAAACAAC 58.538 39.130 0.00 0.00 0.00 3.32
1291 1378 1.962306 GCAAGGGAAACGCGTACCA 60.962 57.895 27.83 0.00 0.00 3.25
1303 1390 2.111043 ACAGACACACGGCAAGGG 59.889 61.111 0.00 0.00 0.00 3.95
1383 1472 2.103771 AGAGCAGAGAACAGAGCAACAA 59.896 45.455 0.00 0.00 0.00 2.83
1388 1477 0.247185 AGCAGAGCAGAGAACAGAGC 59.753 55.000 0.00 0.00 0.00 4.09
1418 1517 3.047796 TCGACTCGCTAACTGAAACAAC 58.952 45.455 0.00 0.00 0.00 3.32
1433 1532 5.012328 ACTCCCAAATTCAGTATCGACTC 57.988 43.478 0.00 0.00 31.73 3.36
1435 1534 6.201044 CACATACTCCCAAATTCAGTATCGAC 59.799 42.308 0.00 0.00 32.11 4.20
1451 1554 4.188247 TCACTACAAGCACACATACTCC 57.812 45.455 0.00 0.00 0.00 3.85
1459 1562 6.484977 TCACAAATAACATCACTACAAGCACA 59.515 34.615 0.00 0.00 0.00 4.57
1541 1647 8.079809 ACCAGTTTATTTTCGAATAAAGTGTGG 58.920 33.333 24.17 20.32 45.56 4.17
1549 1655 8.155821 TGTGACAACCAGTTTATTTTCGAATA 57.844 30.769 0.00 0.00 0.00 1.75
1565 1671 7.257722 CCCAATACTATTTGAATGTGACAACC 58.742 38.462 0.00 0.00 0.00 3.77
1581 1689 5.596763 ACAGTCCTAGAAACCCCAATACTA 58.403 41.667 0.00 0.00 0.00 1.82
1609 1717 6.327279 TCACAGAGTATATCCATAACACCG 57.673 41.667 0.00 0.00 0.00 4.94
1627 1735 6.091849 CCACAGATCAGTAACTTCAATCACAG 59.908 42.308 0.00 0.00 0.00 3.66
1658 1766 9.388506 ACAATATTTACATCTTTCTCACTGAGG 57.611 33.333 6.20 0.00 0.00 3.86
1713 1822 0.039618 AGTTACACCTGGCCATTGGG 59.960 55.000 15.16 11.71 37.18 4.12
1787 1896 1.583054 GCTTGACACACGGAAGAAGT 58.417 50.000 0.00 0.00 0.00 3.01
1832 1948 4.778534 ATTCAGAAACTTGCATCAGGTG 57.221 40.909 0.00 0.00 0.00 4.00
1888 2013 7.899841 AGTTTCGAGTTACAAGTAAAAACGTTC 59.100 33.333 0.00 0.00 32.02 3.95
1891 2016 7.175410 ACAGTTTCGAGTTACAAGTAAAAACG 58.825 34.615 10.13 8.95 32.02 3.60
1892 2017 8.885302 AACAGTTTCGAGTTACAAGTAAAAAC 57.115 30.769 8.74 8.74 0.00 2.43
1894 2019 7.201635 GGGAACAGTTTCGAGTTACAAGTAAAA 60.202 37.037 0.54 0.00 30.01 1.52
1897 2022 5.069516 AGGGAACAGTTTCGAGTTACAAGTA 59.930 40.000 0.54 0.00 30.01 2.24
2148 2293 7.514127 AGGAGGCTGGAAGAACAAATATAGATA 59.486 37.037 0.00 0.00 34.07 1.98
2149 2294 6.331307 AGGAGGCTGGAAGAACAAATATAGAT 59.669 38.462 0.00 0.00 34.07 1.98
2150 2295 5.667626 AGGAGGCTGGAAGAACAAATATAGA 59.332 40.000 0.00 0.00 34.07 1.98
2155 2300 3.589288 ACTAGGAGGCTGGAAGAACAAAT 59.411 43.478 0.00 0.00 34.07 2.32
2166 2311 7.148239 CCTTATAACAAACAAACTAGGAGGCTG 60.148 40.741 0.00 0.00 0.00 4.85
2189 2334 8.990163 TCCTAATGAAAACTAAAGACAACCTT 57.010 30.769 0.00 0.00 36.47 3.50
2234 2484 9.520204 GCTTGTTGTGTGAGCATATTAATAATT 57.480 29.630 0.00 0.00 36.45 1.40
2235 2485 8.685427 TGCTTGTTGTGTGAGCATATTAATAAT 58.315 29.630 0.00 0.00 41.15 1.28
2236 2486 8.049655 TGCTTGTTGTGTGAGCATATTAATAA 57.950 30.769 0.00 0.00 41.15 1.40
2237 2487 7.622893 TGCTTGTTGTGTGAGCATATTAATA 57.377 32.000 0.00 0.00 41.15 0.98
2238 2488 6.513806 TGCTTGTTGTGTGAGCATATTAAT 57.486 33.333 0.00 0.00 41.15 1.40
2246 2496 2.187707 CAGTTTGCTTGTTGTGTGAGC 58.812 47.619 0.00 0.00 36.95 4.26
2289 2539 1.002366 GCATTAGAGCAGACCACACG 58.998 55.000 0.00 0.00 0.00 4.49
2298 2548 5.726980 AACAAATTTCCTGCATTAGAGCA 57.273 34.783 0.00 0.00 43.35 4.26
2299 2549 6.920210 GGATAACAAATTTCCTGCATTAGAGC 59.080 38.462 0.00 0.00 0.00 4.09
2348 2598 6.706716 GGGATTTACTACTTGGCTATTCTGAC 59.293 42.308 0.00 0.00 0.00 3.51
2392 2642 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2393 2643 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2394 2644 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2395 2645 3.386726 TGTCTTATATTGTGGGACGGAGG 59.613 47.826 0.00 0.00 0.00 4.30
2396 2646 4.099573 AGTGTCTTATATTGTGGGACGGAG 59.900 45.833 0.00 0.00 0.00 4.63
2397 2647 4.028131 AGTGTCTTATATTGTGGGACGGA 58.972 43.478 0.00 0.00 0.00 4.69
2398 2648 4.402056 AGTGTCTTATATTGTGGGACGG 57.598 45.455 0.00 0.00 0.00 4.79
2399 2649 6.737254 AAAAGTGTCTTATATTGTGGGACG 57.263 37.500 0.00 0.00 0.00 4.79
2422 2672 9.549509 CGTTTTTGCAAGCTAACATAACTTATA 57.450 29.630 16.37 0.00 0.00 0.98
2423 2673 8.079809 ACGTTTTTGCAAGCTAACATAACTTAT 58.920 29.630 16.37 0.00 0.00 1.73
2424 2674 7.419204 ACGTTTTTGCAAGCTAACATAACTTA 58.581 30.769 16.37 0.00 0.00 2.24
2425 2675 6.270064 ACGTTTTTGCAAGCTAACATAACTT 58.730 32.000 16.37 0.00 0.00 2.66
2426 2676 5.827666 ACGTTTTTGCAAGCTAACATAACT 58.172 33.333 16.37 0.00 0.00 2.24
2427 2677 5.912955 AGACGTTTTTGCAAGCTAACATAAC 59.087 36.000 16.37 0.00 0.00 1.89
2428 2678 6.067263 AGACGTTTTTGCAAGCTAACATAA 57.933 33.333 16.37 0.00 0.00 1.90
2429 2679 5.682943 AGACGTTTTTGCAAGCTAACATA 57.317 34.783 16.37 0.00 0.00 2.29
2430 2680 4.568152 AGACGTTTTTGCAAGCTAACAT 57.432 36.364 16.37 5.95 0.00 2.71
2431 2681 4.364415 AAGACGTTTTTGCAAGCTAACA 57.636 36.364 16.37 0.00 0.00 2.41
2432 2682 7.295930 AGTATAAGACGTTTTTGCAAGCTAAC 58.704 34.615 0.00 5.28 0.00 2.34
2433 2683 7.429636 AGTATAAGACGTTTTTGCAAGCTAA 57.570 32.000 0.00 0.00 0.00 3.09
2434 2684 8.600625 CATAGTATAAGACGTTTTTGCAAGCTA 58.399 33.333 0.00 0.00 0.00 3.32
2435 2685 5.941948 AGTATAAGACGTTTTTGCAAGCT 57.058 34.783 0.00 0.00 0.00 3.74
2436 2686 6.687105 CCATAGTATAAGACGTTTTTGCAAGC 59.313 38.462 0.00 0.00 0.00 4.01
2437 2687 7.065324 TCCCATAGTATAAGACGTTTTTGCAAG 59.935 37.037 0.00 0.00 0.00 4.01
2438 2688 6.879993 TCCCATAGTATAAGACGTTTTTGCAA 59.120 34.615 0.00 0.00 0.00 4.08
2439 2689 6.314400 GTCCCATAGTATAAGACGTTTTTGCA 59.686 38.462 0.00 0.00 0.00 4.08
2440 2690 6.509039 CGTCCCATAGTATAAGACGTTTTTGC 60.509 42.308 18.97 0.00 43.89 3.68
2441 2691 6.019318 CCGTCCCATAGTATAAGACGTTTTTG 60.019 42.308 22.61 10.67 46.62 2.44
2442 2692 6.044682 CCGTCCCATAGTATAAGACGTTTTT 58.955 40.000 22.61 0.00 46.62 1.94
2443 2693 5.360714 TCCGTCCCATAGTATAAGACGTTTT 59.639 40.000 22.61 0.00 46.62 2.43
2444 2694 4.889409 TCCGTCCCATAGTATAAGACGTTT 59.111 41.667 22.61 0.00 46.62 3.60
2445 2695 4.464008 TCCGTCCCATAGTATAAGACGTT 58.536 43.478 22.61 0.00 46.62 3.99
2446 2696 4.070716 CTCCGTCCCATAGTATAAGACGT 58.929 47.826 22.61 0.00 46.62 4.34
2448 2698 3.762823 CCCTCCGTCCCATAGTATAAGAC 59.237 52.174 2.86 2.86 0.00 3.01
2449 2699 3.659195 TCCCTCCGTCCCATAGTATAAGA 59.341 47.826 0.00 0.00 0.00 2.10
2450 2700 4.017808 CTCCCTCCGTCCCATAGTATAAG 58.982 52.174 0.00 0.00 0.00 1.73
2451 2701 3.400322 ACTCCCTCCGTCCCATAGTATAA 59.600 47.826 0.00 0.00 0.00 0.98
2452 2702 2.991713 ACTCCCTCCGTCCCATAGTATA 59.008 50.000 0.00 0.00 0.00 1.47
2453 2703 1.787676 ACTCCCTCCGTCCCATAGTAT 59.212 52.381 0.00 0.00 0.00 2.12
2454 2704 1.229131 ACTCCCTCCGTCCCATAGTA 58.771 55.000 0.00 0.00 0.00 1.82
2455 2705 1.229131 TACTCCCTCCGTCCCATAGT 58.771 55.000 0.00 0.00 0.00 2.12
2456 2706 2.041891 AGATACTCCCTCCGTCCCATAG 59.958 54.545 0.00 0.00 0.00 2.23
2457 2707 2.071372 AGATACTCCCTCCGTCCCATA 58.929 52.381 0.00 0.00 0.00 2.74
2458 2708 0.861155 AGATACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
2459 2709 0.635009 AAGATACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
2460 2710 2.107901 TCTAAGATACTCCCTCCGTCCC 59.892 54.545 0.00 0.00 0.00 4.46
2461 2711 3.505480 TCTAAGATACTCCCTCCGTCC 57.495 52.381 0.00 0.00 0.00 4.79
2462 2712 5.279056 CCATTTCTAAGATACTCCCTCCGTC 60.279 48.000 0.00 0.00 0.00 4.79
2463 2713 4.589374 CCATTTCTAAGATACTCCCTCCGT 59.411 45.833 0.00 0.00 0.00 4.69
2464 2714 4.589374 ACCATTTCTAAGATACTCCCTCCG 59.411 45.833 0.00 0.00 0.00 4.63
2465 2715 6.502074 AACCATTTCTAAGATACTCCCTCC 57.498 41.667 0.00 0.00 0.00 4.30
2507 2757 5.415701 CCACTGTAAAATATCTGTGTTGGCT 59.584 40.000 0.00 0.00 33.70 4.75
2555 2805 6.041511 CACAACACAATCAGATCAACCAAAA 58.958 36.000 0.00 0.00 0.00 2.44
2880 3130 6.655003 ACTTGATATCAGACAAACGGACAAAT 59.345 34.615 5.39 0.00 0.00 2.32
3000 3250 2.239907 GGTGGAGACCCTTGCTAAATCT 59.760 50.000 0.00 0.00 36.03 2.40
3054 3304 9.196552 GAAGTAAATGTCCCAAAATGAAAAGAG 57.803 33.333 0.00 0.00 0.00 2.85
3245 3495 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3261 3511 2.104792 GCATGCAACTATACTCCCTCCA 59.895 50.000 14.21 0.00 0.00 3.86
3376 3699 2.657297 GGCAGAACATTGGCAGGAA 58.343 52.632 0.00 0.00 42.68 3.36
3381 3704 3.193267 TCAACTATTGGCAGAACATTGGC 59.807 43.478 0.00 0.00 43.38 4.52
3382 3705 4.142315 CCTCAACTATTGGCAGAACATTGG 60.142 45.833 0.00 0.00 0.00 3.16
3383 3706 4.701651 TCCTCAACTATTGGCAGAACATTG 59.298 41.667 0.00 0.00 0.00 2.82
3524 3857 6.508030 TCCATGCTACTATAATTGTTGGGA 57.492 37.500 0.00 0.00 0.00 4.37
3558 3891 8.297426 GGAACGAAGGAACTAAAGATTTGATTT 58.703 33.333 0.00 0.00 38.49 2.17
3599 3932 6.024552 ACAGTTTGGCACCAATATGTTTAG 57.975 37.500 2.31 0.00 33.87 1.85
3628 3961 4.481112 GGATGTGCGCGGCCAAAG 62.481 66.667 8.83 0.00 0.00 2.77
3642 3975 4.465305 CAGAAAAGGGAAGCATTTCAGGAT 59.535 41.667 0.00 0.00 35.91 3.24
3654 3987 3.295973 CCCAACAAGTCAGAAAAGGGAA 58.704 45.455 0.00 0.00 37.22 3.97
3909 4263 4.941873 AGTAGGAAACATTTCTTAAGGCCG 59.058 41.667 1.85 0.00 37.35 6.13
3952 4306 8.983702 ACTAACTTTAATACAAAGTTGGGTCA 57.016 30.769 21.95 6.46 46.38 4.02
3979 4333 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
3981 4335 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3983 4337 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3984 4338 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3985 4339 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3987 4341 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3988 4342 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3989 4343 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3990 4344 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3992 4346 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3993 4347 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3999 4429 3.228453 GTCATATACTCCCTCCGTTCCA 58.772 50.000 0.00 0.00 0.00 3.53
4077 4509 2.817258 CCTTTTTGGGTCACGAGCATTA 59.183 45.455 0.00 0.00 0.00 1.90
4078 4510 1.613437 CCTTTTTGGGTCACGAGCATT 59.387 47.619 0.00 0.00 0.00 3.56
4136 4568 7.202102 GGATCACTGGGTGACTATTAACCTATT 60.202 40.741 2.34 0.00 45.65 1.73
4141 4639 4.142004 ACGGATCACTGGGTGACTATTAAC 60.142 45.833 2.34 0.00 45.65 2.01
4148 4646 1.741770 GCACGGATCACTGGGTGAC 60.742 63.158 2.34 0.00 45.65 3.67
4157 4655 3.202906 GGTAAAGCATAAGCACGGATCA 58.797 45.455 0.00 0.00 45.49 2.92
4179 4677 5.244402 TGAAAATGTCACATGAGCAGGATTT 59.756 36.000 0.00 0.00 0.00 2.17
4184 4682 5.055642 ACATGAAAATGTCACATGAGCAG 57.944 39.130 12.24 0.00 42.41 4.24
4189 4687 8.936070 ATATCCAAACATGAAAATGTCACATG 57.064 30.769 0.00 0.00 44.42 3.21
4202 4701 8.667463 TGTATTGATGCGATATATCCAAACATG 58.333 33.333 7.15 0.00 0.00 3.21
4359 4962 4.707448 ACTTGCACTACATCAGCTACTACT 59.293 41.667 0.00 0.00 0.00 2.57
4364 4967 6.042777 GTGAATACTTGCACTACATCAGCTA 58.957 40.000 0.00 0.00 32.44 3.32
4365 4968 4.872691 GTGAATACTTGCACTACATCAGCT 59.127 41.667 0.00 0.00 32.44 4.24
4367 4970 6.712549 CATGTGAATACTTGCACTACATCAG 58.287 40.000 0.00 0.00 36.05 2.90
4392 5000 7.382898 GCTTCCTTATTCTATAGGTTCTGGAG 58.617 42.308 0.00 0.51 33.15 3.86
4412 5020 1.743252 CCTTCAGTCAGGCGCTTCC 60.743 63.158 7.64 0.00 0.00 3.46
4413 5021 3.882025 CCTTCAGTCAGGCGCTTC 58.118 61.111 7.64 0.00 0.00 3.86
4450 5058 4.020751 TCTCTGTCACCTGGATCAGAAAAG 60.021 45.833 0.00 0.82 35.06 2.27
4456 5064 1.189752 GCTCTCTGTCACCTGGATCA 58.810 55.000 0.00 0.00 0.00 2.92
4465 5073 1.615883 GTCAGTCAAGGCTCTCTGTCA 59.384 52.381 11.33 0.00 0.00 3.58
4470 5078 2.550180 GGTTTTGTCAGTCAAGGCTCTC 59.450 50.000 0.00 0.00 37.35 3.20
4488 5104 2.298729 ACAACACAAAACACAGCAGGTT 59.701 40.909 0.00 0.00 0.00 3.50
4578 5194 2.978156 ACTTCTTCAATGGCCCTTCA 57.022 45.000 0.00 0.00 0.00 3.02
4608 5224 0.605319 CGTAGTTGCCCTTGGAAGCA 60.605 55.000 0.00 0.00 37.18 3.91
4746 5376 0.668706 CACTTCCTCCGCACAGAGTG 60.669 60.000 0.00 0.00 36.51 3.51
4763 5393 1.132588 GCTCTCTTCGTGTGACACAC 58.867 55.000 25.76 25.76 45.26 3.82
4888 5522 9.291664 GTAAAGTTCTCGCATATATATCTGTCC 57.708 37.037 0.00 0.00 0.00 4.02
4928 5562 6.751514 TGACACCCAATAATGTAACACATC 57.248 37.500 0.00 0.00 37.97 3.06
4996 5632 5.070001 CACCCATCCAAGTAACAAGAAAGA 58.930 41.667 0.00 0.00 0.00 2.52
5000 5640 3.392947 TGACACCCATCCAAGTAACAAGA 59.607 43.478 0.00 0.00 0.00 3.02
5001 5641 3.750371 TGACACCCATCCAAGTAACAAG 58.250 45.455 0.00 0.00 0.00 3.16
5002 5642 3.866703 TGACACCCATCCAAGTAACAA 57.133 42.857 0.00 0.00 0.00 2.83
5003 5643 4.078537 CAATGACACCCATCCAAGTAACA 58.921 43.478 0.00 0.00 33.53 2.41
5108 5895 9.878667 TCAAATTAGGACATCAACTTATCGTTA 57.121 29.630 0.00 0.00 33.63 3.18
5111 5898 7.852945 GCTTCAAATTAGGACATCAACTTATCG 59.147 37.037 0.00 0.00 0.00 2.92
5149 5941 3.687698 GCCTTCCTGTTTCTTATACGCAA 59.312 43.478 0.00 0.00 0.00 4.85
5150 5942 3.267483 GCCTTCCTGTTTCTTATACGCA 58.733 45.455 0.00 0.00 0.00 5.24
5152 5944 6.537301 TGTTATGCCTTCCTGTTTCTTATACG 59.463 38.462 0.00 0.00 0.00 3.06
5154 5946 8.736244 GTTTGTTATGCCTTCCTGTTTCTTATA 58.264 33.333 0.00 0.00 0.00 0.98
5158 5950 4.280929 GGTTTGTTATGCCTTCCTGTTTCT 59.719 41.667 0.00 0.00 0.00 2.52
5166 5959 4.953579 TCTAATGGGGTTTGTTATGCCTTC 59.046 41.667 0.00 0.00 0.00 3.46
5167 5960 4.941713 TCTAATGGGGTTTGTTATGCCTT 58.058 39.130 0.00 0.00 0.00 4.35
5177 5970 7.006509 CCTCATGACATAATCTAATGGGGTTT 58.993 38.462 0.00 0.00 0.00 3.27
5238 6050 6.486657 TCAAGGAAGACCAATACAAAGAACAG 59.513 38.462 0.00 0.00 38.94 3.16
5362 6178 7.254863 GGACAAGATGCAATTTCATGTGTTTTT 60.255 33.333 1.66 0.00 0.00 1.94
5363 6179 6.203338 GGACAAGATGCAATTTCATGTGTTTT 59.797 34.615 1.66 0.00 0.00 2.43
5364 6180 5.697633 GGACAAGATGCAATTTCATGTGTTT 59.302 36.000 1.66 0.00 0.00 2.83
5365 6181 5.011329 AGGACAAGATGCAATTTCATGTGTT 59.989 36.000 1.66 0.00 0.00 3.32
5366 6182 4.525487 AGGACAAGATGCAATTTCATGTGT 59.475 37.500 1.66 0.00 0.00 3.72
5367 6183 5.068234 AGGACAAGATGCAATTTCATGTG 57.932 39.130 1.66 0.00 0.00 3.21
5368 6184 5.014858 AGAGGACAAGATGCAATTTCATGT 58.985 37.500 0.00 0.00 0.00 3.21
5369 6185 5.357314 AGAGAGGACAAGATGCAATTTCATG 59.643 40.000 0.00 0.00 0.00 3.07
5370 6186 5.507637 AGAGAGGACAAGATGCAATTTCAT 58.492 37.500 0.00 0.00 0.00 2.57
5416 6232 6.790282 TGTTGACGAAATGAATTTTGTGAGA 58.210 32.000 12.37 0.00 42.76 3.27
5434 6255 0.385974 GGTTGCATGCGTCTGTTGAC 60.386 55.000 14.09 1.48 39.70 3.18
5437 6258 0.895100 ATGGGTTGCATGCGTCTGTT 60.895 50.000 14.09 0.00 0.00 3.16
5439 6260 1.430632 GATGGGTTGCATGCGTCTG 59.569 57.895 14.09 0.00 0.00 3.51
5442 6263 3.814268 GCGATGGGTTGCATGCGT 61.814 61.111 14.09 0.00 34.69 5.24
5444 6265 2.688526 GATGGCGATGGGTTGCATGC 62.689 60.000 11.82 11.82 36.39 4.06
5445 6266 1.361271 GATGGCGATGGGTTGCATG 59.639 57.895 0.00 0.00 36.39 4.06
5446 6267 0.468585 ATGATGGCGATGGGTTGCAT 60.469 50.000 0.00 0.00 36.39 3.96
5447 6268 0.683828 AATGATGGCGATGGGTTGCA 60.684 50.000 0.00 0.00 36.39 4.08
5448 6269 1.317613 TAATGATGGCGATGGGTTGC 58.682 50.000 0.00 0.00 0.00 4.17
5466 6290 3.621558 AGAGGACACACTCGTGATGATA 58.378 45.455 3.74 0.00 46.80 2.15
5475 6299 1.609555 AGTCAACGAGAGGACACACTC 59.390 52.381 0.00 0.00 36.50 3.51
5476 6300 1.693627 AGTCAACGAGAGGACACACT 58.306 50.000 0.00 0.00 36.50 3.55
5477 6301 3.637998 TTAGTCAACGAGAGGACACAC 57.362 47.619 0.00 0.00 36.50 3.82
5478 6302 3.192844 GGATTAGTCAACGAGAGGACACA 59.807 47.826 0.00 0.00 36.50 3.72
5479 6303 3.192844 TGGATTAGTCAACGAGAGGACAC 59.807 47.826 0.00 0.00 36.50 3.67
5480 6304 3.427573 TGGATTAGTCAACGAGAGGACA 58.572 45.455 0.00 0.00 36.50 4.02
5481 6305 3.444388 ACTGGATTAGTCAACGAGAGGAC 59.556 47.826 0.00 0.00 33.17 3.85
5489 6316 3.424962 GCTTGCGAACTGGATTAGTCAAC 60.425 47.826 0.00 0.00 39.18 3.18
5499 6326 3.793144 GCTCGGCTTGCGAACTGG 61.793 66.667 0.00 0.00 0.00 4.00
5512 6339 0.861837 GATGATTACGGCCTTGCTCG 59.138 55.000 0.00 0.00 0.00 5.03
5513 6340 1.230324 GGATGATTACGGCCTTGCTC 58.770 55.000 0.00 0.00 0.00 4.26
5550 6431 3.369366 GGCAACAGATTGTTTTATGGGGG 60.369 47.826 0.00 0.00 38.77 5.40
5555 6436 5.127682 GGATGGAGGCAACAGATTGTTTTAT 59.872 40.000 0.00 0.00 38.77 1.40
5558 6439 2.827921 GGATGGAGGCAACAGATTGTTT 59.172 45.455 0.00 0.00 38.77 2.83
5566 6447 1.075601 AGGAAAGGATGGAGGCAACA 58.924 50.000 0.00 0.00 41.41 3.33
5567 6448 2.095461 GAAGGAAAGGATGGAGGCAAC 58.905 52.381 0.00 0.00 0.00 4.17
5575 6456 1.032114 GGGCACGGAAGGAAAGGATG 61.032 60.000 0.00 0.00 0.00 3.51
5588 6469 3.462483 TGTGTATTGTATAGGGGCACG 57.538 47.619 0.00 0.00 0.00 5.34
5590 6471 4.041464 TCCTTGTGTATTGTATAGGGGCA 58.959 43.478 0.00 0.00 0.00 5.36
5595 6476 9.212641 CTTCCATGATCCTTGTGTATTGTATAG 57.787 37.037 0.00 0.00 0.00 1.31
5603 6484 2.846206 AGCCTTCCATGATCCTTGTGTA 59.154 45.455 0.00 0.00 0.00 2.90
5605 6486 2.426024 CAAGCCTTCCATGATCCTTGTG 59.574 50.000 0.00 0.00 0.00 3.33
5606 6487 2.731572 CAAGCCTTCCATGATCCTTGT 58.268 47.619 0.00 0.00 0.00 3.16
5607 6488 1.407979 GCAAGCCTTCCATGATCCTTG 59.592 52.381 0.00 1.07 34.40 3.61
5610 6491 1.030457 CAGCAAGCCTTCCATGATCC 58.970 55.000 0.00 0.00 0.00 3.36
5611 6492 0.384669 GCAGCAAGCCTTCCATGATC 59.615 55.000 0.00 0.00 37.23 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.