Multiple sequence alignment - TraesCS3A01G059400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G059400 chr3A 100.000 2603 0 0 1 2603 36070665 36068063 0.000000e+00 4807.0
1 TraesCS3A01G059400 chr3B 94.726 2446 108 13 1 2430 43527008 43524568 0.000000e+00 3783.0
2 TraesCS3A01G059400 chr3B 80.432 1620 279 31 28 1632 689006759 689005163 0.000000e+00 1201.0
3 TraesCS3A01G059400 chr3B 79.084 1616 309 25 28 1632 642214863 642213266 0.000000e+00 1085.0
4 TraesCS3A01G059400 chr3B 79.133 1615 299 24 28 1631 690447593 690449180 0.000000e+00 1081.0
5 TraesCS3A01G059400 chr3B 78.700 277 53 4 2262 2532 9168706 9168430 2.060000e-41 180.0
6 TraesCS3A01G059400 chrUn 80.074 1616 283 30 3 1603 330561749 330563340 0.000000e+00 1164.0
7 TraesCS3A01G059400 chrUn 78.545 1636 318 25 13 1632 342677953 342679571 0.000000e+00 1046.0
8 TraesCS3A01G059400 chrUn 79.363 848 156 15 791 1632 405666919 405667753 1.740000e-161 579.0
9 TraesCS3A01G059400 chrUn 80.144 277 49 5 2260 2530 2661922 2662198 4.390000e-48 202.0
10 TraesCS3A01G059400 chrUn 89.855 69 7 0 2449 2517 38971574 38971506 3.570000e-14 89.8
11 TraesCS3A01G059400 chr3D 79.523 1636 298 30 13 1632 523335247 523336861 0.000000e+00 1131.0
12 TraesCS3A01G059400 chr3D 79.149 1621 288 42 29 1632 523408563 523410150 0.000000e+00 1075.0
13 TraesCS3A01G059400 chr3D 78.554 1618 296 37 28 1632 523556016 523557595 0.000000e+00 1018.0
14 TraesCS3A01G059400 chr3D 78.925 1172 206 26 29 1188 523380142 523381284 0.000000e+00 758.0
15 TraesCS3A01G059400 chr3D 80.320 874 147 20 28 893 523560857 523561713 2.830000e-179 638.0
16 TraesCS3A01G059400 chr3D 84.713 628 86 8 952 1575 523562709 523563330 1.020000e-173 619.0
17 TraesCS3A01G059400 chr3D 80.418 383 66 8 1241 1622 523381280 523381654 1.520000e-72 283.0
18 TraesCS3A01G059400 chr3D 82.653 196 34 0 598 793 523598149 523598344 9.580000e-40 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G059400 chr3A 36068063 36070665 2602 True 4807.000000 4807 100.000000 1 2603 1 chr3A.!!$R1 2602
1 TraesCS3A01G059400 chr3B 43524568 43527008 2440 True 3783.000000 3783 94.726000 1 2430 1 chr3B.!!$R2 2429
2 TraesCS3A01G059400 chr3B 689005163 689006759 1596 True 1201.000000 1201 80.432000 28 1632 1 chr3B.!!$R4 1604
3 TraesCS3A01G059400 chr3B 642213266 642214863 1597 True 1085.000000 1085 79.084000 28 1632 1 chr3B.!!$R3 1604
4 TraesCS3A01G059400 chr3B 690447593 690449180 1587 False 1081.000000 1081 79.133000 28 1631 1 chr3B.!!$F1 1603
5 TraesCS3A01G059400 chrUn 330561749 330563340 1591 False 1164.000000 1164 80.074000 3 1603 1 chrUn.!!$F2 1600
6 TraesCS3A01G059400 chrUn 342677953 342679571 1618 False 1046.000000 1046 78.545000 13 1632 1 chrUn.!!$F3 1619
7 TraesCS3A01G059400 chrUn 405666919 405667753 834 False 579.000000 579 79.363000 791 1632 1 chrUn.!!$F4 841
8 TraesCS3A01G059400 chr3D 523335247 523336861 1614 False 1131.000000 1131 79.523000 13 1632 1 chr3D.!!$F1 1619
9 TraesCS3A01G059400 chr3D 523408563 523410150 1587 False 1075.000000 1075 79.149000 29 1632 1 chr3D.!!$F2 1603
10 TraesCS3A01G059400 chr3D 523556016 523563330 7314 False 758.333333 1018 81.195667 28 1632 3 chr3D.!!$F5 1604
11 TraesCS3A01G059400 chr3D 523380142 523381654 1512 False 520.500000 758 79.671500 29 1622 2 chr3D.!!$F4 1593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 324 2.182014 GTTTGTTGACTTCACGGCAAC 58.818 47.619 3.8 3.8 41.57 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 7562 0.165944 CGTCTAGCGCCCAAAAACTG 59.834 55.0 2.29 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.066284 ACAACTAAACATCATGAGCTTATGGTC 59.934 37.037 17.59 1.05 40.79 4.02
89 90 2.224523 TGGTGTCACTCCAGGAATTGTC 60.225 50.000 2.35 0.00 0.00 3.18
317 324 2.182014 GTTTGTTGACTTCACGGCAAC 58.818 47.619 3.80 3.80 41.57 4.17
483 496 8.548877 AGCTTCCTAGACCTATCAAACAATTTA 58.451 33.333 0.00 0.00 0.00 1.40
546 559 6.332976 AGTTTGGGATACATGGATCTTTCT 57.667 37.500 17.56 6.81 39.74 2.52
591 5436 2.693074 TCCCTTTTGGAAGACTTGCAAC 59.307 45.455 20.30 0.00 40.80 4.17
592 5437 2.430332 CCCTTTTGGAAGACTTGCAACA 59.570 45.455 20.30 13.83 40.80 3.33
601 5446 6.680810 TGGAAGACTTGCAACAATAATCTTG 58.319 36.000 6.97 0.00 0.00 3.02
762 5608 6.374053 TGCCAAATCTCATTGTTCTTCGATTA 59.626 34.615 0.00 0.00 0.00 1.75
764 5610 8.559536 GCCAAATCTCATTGTTCTTCGATTATA 58.440 33.333 0.00 0.00 0.00 0.98
874 5720 4.192429 GGACCCATTCCAGACAATTTTG 57.808 45.455 0.00 0.00 45.10 2.44
936 5782 8.648557 TTGTCTCGGACAATAATCTAAGATTG 57.351 34.615 13.34 0.36 45.88 2.67
1334 7126 4.584638 ACAGCAACAATCCAGGGTTATA 57.415 40.909 0.00 0.00 0.00 0.98
1406 7202 0.252479 ATGAGCCAGGCTGAAGACAG 59.748 55.000 22.26 0.00 45.91 3.51
1527 7323 5.605534 AGGTGTGCATTCTATCAGTATGTC 58.394 41.667 0.00 0.00 37.40 3.06
1635 7432 2.032894 CACGTGGTGTTGAAGTAAGCTG 60.033 50.000 7.95 0.00 0.00 4.24
1667 7464 1.401761 TGCGCCCATTATTGAGCATT 58.598 45.000 4.18 0.00 0.00 3.56
1699 7504 8.403236 AGTACTTGTCTTCCATTGTTGTAAAAC 58.597 33.333 0.00 0.00 0.00 2.43
1718 7523 9.485206 TGTAAAACAATACTGACTAGGAAGTTC 57.515 33.333 5.06 0.00 35.56 3.01
1754 7562 7.852945 GCTAGTACTTTGATGTGCATGTTATTC 59.147 37.037 0.00 0.00 0.00 1.75
1793 7601 5.643348 AGACGTGCAAATTACAGATGAATCA 59.357 36.000 0.00 0.00 0.00 2.57
1800 7608 6.034256 GCAAATTACAGATGAATCAGTGCAAC 59.966 38.462 0.00 0.00 0.00 4.17
1810 7618 8.025445 AGATGAATCAGTGCAACATTTACTTTC 58.975 33.333 0.00 0.00 41.43 2.62
1893 7701 7.568199 AAATAGCTGTAAAATGGTTAGCGAT 57.432 32.000 0.00 0.00 39.27 4.58
1914 7722 4.577834 TTTTGGAACGGAAAGGATGTTC 57.422 40.909 0.00 0.00 0.00 3.18
1921 7729 5.880887 GGAACGGAAAGGATGTTCTAAGAAT 59.119 40.000 4.56 0.00 0.00 2.40
1956 7764 2.854777 TGTTTGGTTTCGTGCGAAATTG 59.145 40.909 20.25 0.00 44.52 2.32
1983 7791 4.089361 GGAACTCCCTTGATCCAAACAAT 58.911 43.478 0.00 0.00 32.08 2.71
2049 7858 8.719560 TTATACCATATTTCTGCACAAACGTA 57.280 30.769 0.00 0.00 0.00 3.57
2053 7862 6.205853 ACCATATTTCTGCACAAACGTAGAAA 59.794 34.615 10.45 10.45 46.84 2.52
2123 7932 1.468914 GCCTGGATTCTGAAACCGTTC 59.531 52.381 11.46 0.00 0.00 3.95
2124 7933 2.778299 CCTGGATTCTGAAACCGTTCA 58.222 47.619 11.46 0.00 41.57 3.18
2125 7934 2.484264 CCTGGATTCTGAAACCGTTCAC 59.516 50.000 11.46 0.00 38.88 3.18
2126 7935 3.138304 CTGGATTCTGAAACCGTTCACA 58.862 45.455 11.46 0.00 38.88 3.58
2218 8029 8.160765 TCATTGTTCCCAAGTAAAGATTAGTGA 58.839 33.333 0.00 0.00 33.17 3.41
2247 8059 8.383318 TGTGGTTTTTCAGAAATCAAAACAAA 57.617 26.923 9.41 0.00 40.63 2.83
2274 8086 5.160641 GCTAGTTCTTCACTTCTCAGACAG 58.839 45.833 0.00 0.00 36.88 3.51
2307 8119 5.934781 AGCTTAAGAGGAATCCACCATTAG 58.065 41.667 6.67 0.00 0.00 1.73
2339 8151 4.143094 CCAAGTGTTAGCGAGCTTTTAGAC 60.143 45.833 1.86 0.00 0.00 2.59
2366 8178 1.359459 CTTTAGTCGGCGTGCTTCCC 61.359 60.000 6.85 0.00 0.00 3.97
2374 8186 2.972505 CGTGCTTCCCGCTGTTGT 60.973 61.111 0.00 0.00 40.11 3.32
2378 8190 3.023591 GCTTCCCGCTGTTGTACGC 62.024 63.158 0.00 0.00 35.14 4.42
2407 8219 4.981389 TGTTGCACAACACAAAAGAAAC 57.019 36.364 12.02 0.00 45.42 2.78
2416 8228 7.095816 GCACAACACAAAAGAAACAGTAAAAGT 60.096 33.333 0.00 0.00 0.00 2.66
2422 8234 9.567848 CACAAAAGAAACAGTAAAAGTACATGT 57.432 29.630 2.69 2.69 32.12 3.21
2423 8235 9.783256 ACAAAAGAAACAGTAAAAGTACATGTC 57.217 29.630 0.00 0.00 32.12 3.06
2424 8236 9.781834 CAAAAGAAACAGTAAAAGTACATGTCA 57.218 29.630 0.00 0.00 32.12 3.58
2425 8237 9.783256 AAAAGAAACAGTAAAAGTACATGTCAC 57.217 29.630 0.00 0.00 32.12 3.67
2427 8239 8.500753 AGAAACAGTAAAAGTACATGTCACAA 57.499 30.769 0.00 0.00 32.12 3.33
2428 8240 8.395633 AGAAACAGTAAAAGTACATGTCACAAC 58.604 33.333 0.00 0.00 32.12 3.32
2429 8241 7.859325 AACAGTAAAAGTACATGTCACAACT 57.141 32.000 0.00 0.00 32.12 3.16
2430 8242 7.859325 ACAGTAAAAGTACATGTCACAACTT 57.141 32.000 0.00 3.44 33.72 2.66
2431 8243 8.951787 ACAGTAAAAGTACATGTCACAACTTA 57.048 30.769 11.22 0.00 32.09 2.24
2432 8244 9.555727 ACAGTAAAAGTACATGTCACAACTTAT 57.444 29.630 11.22 1.73 32.09 1.73
2433 8245 9.811655 CAGTAAAAGTACATGTCACAACTTATG 57.188 33.333 11.22 5.98 32.09 1.90
2434 8246 8.999431 AGTAAAAGTACATGTCACAACTTATGG 58.001 33.333 11.22 0.00 32.09 2.74
2435 8247 8.995220 GTAAAAGTACATGTCACAACTTATGGA 58.005 33.333 11.22 0.00 32.09 3.41
2436 8248 8.458573 AAAAGTACATGTCACAACTTATGGAA 57.541 30.769 11.22 0.00 32.09 3.53
2437 8249 7.672983 AAGTACATGTCACAACTTATGGAAG 57.327 36.000 0.00 0.00 38.76 3.46
2438 8250 6.173339 AGTACATGTCACAACTTATGGAAGG 58.827 40.000 0.00 0.00 36.95 3.46
2439 8251 3.758554 ACATGTCACAACTTATGGAAGGC 59.241 43.478 0.00 0.00 36.95 4.35
2440 8252 3.788227 TGTCACAACTTATGGAAGGCT 57.212 42.857 0.00 0.00 36.95 4.58
2441 8253 3.674997 TGTCACAACTTATGGAAGGCTC 58.325 45.455 0.00 0.00 36.95 4.70
2442 8254 3.072330 TGTCACAACTTATGGAAGGCTCA 59.928 43.478 0.00 0.00 36.95 4.26
2443 8255 4.072131 GTCACAACTTATGGAAGGCTCAA 58.928 43.478 0.00 0.00 36.95 3.02
2444 8256 4.702131 GTCACAACTTATGGAAGGCTCAAT 59.298 41.667 0.00 0.00 36.95 2.57
2445 8257 4.701651 TCACAACTTATGGAAGGCTCAATG 59.298 41.667 0.00 0.00 36.95 2.82
2446 8258 4.019174 ACAACTTATGGAAGGCTCAATGG 58.981 43.478 0.00 0.00 36.95 3.16
2447 8259 2.659428 ACTTATGGAAGGCTCAATGGC 58.341 47.619 0.00 0.00 36.95 4.40
2448 8260 2.025037 ACTTATGGAAGGCTCAATGGCA 60.025 45.455 0.00 0.00 44.55 4.92
2449 8261 2.824689 TATGGAAGGCTCAATGGCAA 57.175 45.000 0.00 0.00 44.55 4.52
2450 8262 1.188863 ATGGAAGGCTCAATGGCAAC 58.811 50.000 0.00 0.00 44.55 4.17
2451 8263 0.112995 TGGAAGGCTCAATGGCAACT 59.887 50.000 0.00 0.00 44.55 3.16
2452 8264 0.529378 GGAAGGCTCAATGGCAACTG 59.471 55.000 0.00 0.00 44.55 3.16
2453 8265 0.529378 GAAGGCTCAATGGCAACTGG 59.471 55.000 0.00 0.00 44.55 4.00
2454 8266 0.178953 AAGGCTCAATGGCAACTGGT 60.179 50.000 0.00 0.00 44.55 4.00
2455 8267 0.896940 AGGCTCAATGGCAACTGGTG 60.897 55.000 0.00 0.00 44.55 4.17
2456 8268 1.181098 GGCTCAATGGCAACTGGTGT 61.181 55.000 0.00 0.00 41.37 4.16
2457 8269 1.533625 GCTCAATGGCAACTGGTGTA 58.466 50.000 0.00 0.00 37.61 2.90
2458 8270 2.094675 GCTCAATGGCAACTGGTGTAT 58.905 47.619 0.00 0.00 37.61 2.29
2459 8271 2.159338 GCTCAATGGCAACTGGTGTATG 60.159 50.000 0.00 0.00 37.61 2.39
2460 8272 2.424601 CTCAATGGCAACTGGTGTATGG 59.575 50.000 0.00 0.00 37.61 2.74
2461 8273 2.040947 TCAATGGCAACTGGTGTATGGA 59.959 45.455 0.00 0.00 37.61 3.41
2462 8274 3.025978 CAATGGCAACTGGTGTATGGAT 58.974 45.455 0.00 0.00 37.61 3.41
2463 8275 2.897271 TGGCAACTGGTGTATGGATT 57.103 45.000 0.00 0.00 37.61 3.01
2464 8276 2.445427 TGGCAACTGGTGTATGGATTG 58.555 47.619 0.00 0.00 37.61 2.67
2465 8277 2.224992 TGGCAACTGGTGTATGGATTGT 60.225 45.455 0.00 0.00 37.61 2.71
2466 8278 2.825532 GGCAACTGGTGTATGGATTGTT 59.174 45.455 0.00 0.00 0.00 2.83
2467 8279 3.258123 GGCAACTGGTGTATGGATTGTTT 59.742 43.478 0.00 0.00 0.00 2.83
2468 8280 4.485163 GCAACTGGTGTATGGATTGTTTC 58.515 43.478 0.00 0.00 0.00 2.78
2469 8281 4.618227 GCAACTGGTGTATGGATTGTTTCC 60.618 45.833 0.00 0.00 45.69 3.13
2480 8292 4.287766 GGATTGTTTCCACTGGACTAGT 57.712 45.455 0.00 0.00 44.74 2.57
2481 8293 5.416271 GGATTGTTTCCACTGGACTAGTA 57.584 43.478 0.00 0.00 44.74 1.82
2482 8294 5.801380 GGATTGTTTCCACTGGACTAGTAA 58.199 41.667 0.00 0.00 44.74 2.24
2483 8295 6.415573 GGATTGTTTCCACTGGACTAGTAAT 58.584 40.000 0.00 0.00 44.74 1.89
2484 8296 6.316390 GGATTGTTTCCACTGGACTAGTAATG 59.684 42.308 0.00 0.00 44.74 1.90
2485 8297 5.160607 TGTTTCCACTGGACTAGTAATGG 57.839 43.478 0.00 1.50 37.60 3.16
2486 8298 4.595781 TGTTTCCACTGGACTAGTAATGGT 59.404 41.667 0.00 0.00 37.60 3.55
2487 8299 5.781306 TGTTTCCACTGGACTAGTAATGGTA 59.219 40.000 0.00 0.00 37.60 3.25
2488 8300 6.442564 TGTTTCCACTGGACTAGTAATGGTAT 59.557 38.462 0.00 0.00 37.60 2.73
2489 8301 6.479972 TTCCACTGGACTAGTAATGGTATG 57.520 41.667 0.00 0.00 37.60 2.39
2490 8302 5.525484 TCCACTGGACTAGTAATGGTATGT 58.475 41.667 0.00 0.00 37.60 2.29
2491 8303 5.962031 TCCACTGGACTAGTAATGGTATGTT 59.038 40.000 0.00 0.00 37.60 2.71
2492 8304 6.442564 TCCACTGGACTAGTAATGGTATGTTT 59.557 38.462 0.00 0.00 37.60 2.83
2493 8305 6.761714 CCACTGGACTAGTAATGGTATGTTTC 59.238 42.308 0.00 0.00 37.60 2.78
2494 8306 7.364762 CCACTGGACTAGTAATGGTATGTTTCT 60.365 40.741 0.00 0.00 37.60 2.52
2495 8307 7.492669 CACTGGACTAGTAATGGTATGTTTCTG 59.507 40.741 0.00 0.00 37.60 3.02
2496 8308 6.346096 TGGACTAGTAATGGTATGTTTCTGC 58.654 40.000 0.00 0.00 0.00 4.26
2497 8309 6.156256 TGGACTAGTAATGGTATGTTTCTGCT 59.844 38.462 0.00 0.00 0.00 4.24
2498 8310 7.048512 GGACTAGTAATGGTATGTTTCTGCTT 58.951 38.462 0.00 0.00 0.00 3.91
2499 8311 7.224949 GGACTAGTAATGGTATGTTTCTGCTTC 59.775 40.741 0.00 0.00 0.00 3.86
2500 8312 7.620880 ACTAGTAATGGTATGTTTCTGCTTCA 58.379 34.615 0.00 0.00 0.00 3.02
2501 8313 8.100791 ACTAGTAATGGTATGTTTCTGCTTCAA 58.899 33.333 0.00 0.00 0.00 2.69
2502 8314 7.383102 AGTAATGGTATGTTTCTGCTTCAAG 57.617 36.000 0.00 0.00 0.00 3.02
2503 8315 7.168219 AGTAATGGTATGTTTCTGCTTCAAGA 58.832 34.615 0.00 0.00 0.00 3.02
2504 8316 5.886960 ATGGTATGTTTCTGCTTCAAGAC 57.113 39.130 0.00 0.00 0.00 3.01
2505 8317 4.072131 TGGTATGTTTCTGCTTCAAGACC 58.928 43.478 0.00 0.00 0.00 3.85
2506 8318 4.072131 GGTATGTTTCTGCTTCAAGACCA 58.928 43.478 0.00 0.00 0.00 4.02
2507 8319 4.083271 GGTATGTTTCTGCTTCAAGACCAC 60.083 45.833 0.00 0.00 0.00 4.16
2508 8320 3.281727 TGTTTCTGCTTCAAGACCACT 57.718 42.857 0.00 0.00 0.00 4.00
2509 8321 4.415881 TGTTTCTGCTTCAAGACCACTA 57.584 40.909 0.00 0.00 0.00 2.74
2510 8322 4.973168 TGTTTCTGCTTCAAGACCACTAT 58.027 39.130 0.00 0.00 0.00 2.12
2511 8323 6.109156 TGTTTCTGCTTCAAGACCACTATA 57.891 37.500 0.00 0.00 0.00 1.31
2512 8324 6.711277 TGTTTCTGCTTCAAGACCACTATAT 58.289 36.000 0.00 0.00 0.00 0.86
2513 8325 7.168219 TGTTTCTGCTTCAAGACCACTATATT 58.832 34.615 0.00 0.00 0.00 1.28
2514 8326 8.318412 TGTTTCTGCTTCAAGACCACTATATTA 58.682 33.333 0.00 0.00 0.00 0.98
2515 8327 9.331282 GTTTCTGCTTCAAGACCACTATATTAT 57.669 33.333 0.00 0.00 0.00 1.28
2541 8353 8.863872 ATTTTGTTGGAGTATACTAGCAAAGT 57.136 30.769 5.09 6.31 42.62 2.66
2542 8354 7.667043 TTTGTTGGAGTATACTAGCAAAGTG 57.333 36.000 5.09 0.00 39.39 3.16
2543 8355 5.175859 TGTTGGAGTATACTAGCAAAGTGC 58.824 41.667 5.09 0.00 45.46 4.40
2544 8356 4.402056 TGGAGTATACTAGCAAAGTGCC 57.598 45.455 5.09 0.00 46.52 5.01
2545 8357 3.134081 TGGAGTATACTAGCAAAGTGCCC 59.866 47.826 5.09 0.00 46.52 5.36
2546 8358 3.134081 GGAGTATACTAGCAAAGTGCCCA 59.866 47.826 5.09 0.00 46.52 5.36
2547 8359 4.202367 GGAGTATACTAGCAAAGTGCCCAT 60.202 45.833 5.09 0.00 46.52 4.00
2548 8360 4.708177 AGTATACTAGCAAAGTGCCCATG 58.292 43.478 2.75 0.00 46.52 3.66
2549 8361 3.652057 ATACTAGCAAAGTGCCCATGT 57.348 42.857 2.21 0.00 46.52 3.21
2550 8362 1.538047 ACTAGCAAAGTGCCCATGTG 58.462 50.000 0.00 0.00 46.52 3.21
2551 8363 1.202927 ACTAGCAAAGTGCCCATGTGT 60.203 47.619 0.00 0.00 46.52 3.72
2552 8364 1.888512 CTAGCAAAGTGCCCATGTGTT 59.111 47.619 0.00 0.00 46.52 3.32
2553 8365 0.390124 AGCAAAGTGCCCATGTGTTG 59.610 50.000 0.00 0.00 46.52 3.33
2554 8366 1.223417 GCAAAGTGCCCATGTGTTGC 61.223 55.000 0.00 0.00 37.42 4.17
2555 8367 0.104487 CAAAGTGCCCATGTGTTGCA 59.896 50.000 0.00 0.00 0.00 4.08
2556 8368 0.829333 AAAGTGCCCATGTGTTGCAA 59.171 45.000 0.00 0.00 36.65 4.08
2557 8369 0.104671 AAGTGCCCATGTGTTGCAAC 59.895 50.000 22.83 22.83 36.65 4.17
2558 8370 1.661197 GTGCCCATGTGTTGCAACG 60.661 57.895 23.79 9.92 36.65 4.10
2559 8371 2.734346 GCCCATGTGTTGCAACGC 60.734 61.111 31.33 31.33 39.77 4.84
2560 8372 2.428902 CCCATGTGTTGCAACGCG 60.429 61.111 31.55 20.88 42.14 6.01
2561 8373 2.636462 CCATGTGTTGCAACGCGA 59.364 55.556 31.55 22.73 42.14 5.87
2562 8374 1.440850 CCATGTGTTGCAACGCGAG 60.441 57.895 31.55 25.97 42.14 5.03
2563 8375 1.569003 CATGTGTTGCAACGCGAGA 59.431 52.632 31.55 18.90 42.14 4.04
2564 8376 0.041400 CATGTGTTGCAACGCGAGAA 60.041 50.000 31.55 18.58 42.14 2.87
2565 8377 0.660488 ATGTGTTGCAACGCGAGAAA 59.340 45.000 31.55 18.24 42.14 2.52
2566 8378 0.448197 TGTGTTGCAACGCGAGAAAA 59.552 45.000 31.55 15.09 42.14 2.29
2567 8379 1.135660 TGTGTTGCAACGCGAGAAAAA 60.136 42.857 31.55 14.43 42.14 1.94
2586 8398 4.789012 AAAAATGACATGTTGCGGAGAT 57.211 36.364 0.00 0.00 0.00 2.75
2587 8399 3.770263 AAATGACATGTTGCGGAGATG 57.230 42.857 0.00 0.00 35.26 2.90
2588 8400 2.696989 ATGACATGTTGCGGAGATGA 57.303 45.000 0.00 0.00 33.44 2.92
2589 8401 2.014335 TGACATGTTGCGGAGATGAG 57.986 50.000 0.00 0.00 33.44 2.90
2590 8402 1.293924 GACATGTTGCGGAGATGAGG 58.706 55.000 0.00 0.00 33.44 3.86
2591 8403 0.615331 ACATGTTGCGGAGATGAGGT 59.385 50.000 0.00 0.00 33.44 3.85
2592 8404 1.003580 ACATGTTGCGGAGATGAGGTT 59.996 47.619 0.00 0.00 33.44 3.50
2593 8405 1.399440 CATGTTGCGGAGATGAGGTTG 59.601 52.381 0.00 0.00 30.82 3.77
2594 8406 0.396435 TGTTGCGGAGATGAGGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
2595 8407 0.798776 GTTGCGGAGATGAGGTTGTG 59.201 55.000 0.00 0.00 0.00 3.33
2596 8408 0.955428 TTGCGGAGATGAGGTTGTGC 60.955 55.000 0.00 0.00 0.00 4.57
2597 8409 1.375908 GCGGAGATGAGGTTGTGCA 60.376 57.895 0.00 0.00 0.00 4.57
2598 8410 0.955428 GCGGAGATGAGGTTGTGCAA 60.955 55.000 0.00 0.00 0.00 4.08
2599 8411 1.081892 CGGAGATGAGGTTGTGCAAG 58.918 55.000 0.00 0.00 0.00 4.01
2600 8412 1.457346 GGAGATGAGGTTGTGCAAGG 58.543 55.000 0.00 0.00 0.00 3.61
2601 8413 1.271597 GGAGATGAGGTTGTGCAAGGT 60.272 52.381 0.00 0.00 0.00 3.50
2602 8414 1.808945 GAGATGAGGTTGTGCAAGGTG 59.191 52.381 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.211629 CCCTTGTAAATAGTTAGACCATAAGCT 58.788 37.037 0.00 0.00 0.00 3.74
26 27 5.758784 GGTAGCTGCCCTTGTAAATAGTTAG 59.241 44.000 10.19 0.00 0.00 2.34
89 90 2.064762 CGAGCTGGTTTTCTGACAGAG 58.935 52.381 5.10 0.00 34.21 3.35
299 306 0.736053 GGTTGCCGTGAAGTCAACAA 59.264 50.000 6.66 0.00 41.17 2.83
317 324 6.974622 GTCCTTTATATCTGCAACAATGTTGG 59.025 38.462 25.19 11.44 0.00 3.77
546 559 5.865085 ACTACACCACTGAAAGAATTGCTA 58.135 37.500 0.00 0.00 37.43 3.49
591 5436 8.009974 GCTAGGCGTAAACATACAAGATTATTG 58.990 37.037 0.00 0.00 0.00 1.90
592 5437 7.172703 GGCTAGGCGTAAACATACAAGATTATT 59.827 37.037 0.00 0.00 0.00 1.40
601 5446 5.049886 GGTTATTGGCTAGGCGTAAACATAC 60.050 44.000 21.06 9.34 0.00 2.39
936 5782 5.869579 TGAATCTGCCCACTAATTATCTCC 58.130 41.667 0.00 0.00 0.00 3.71
1406 7202 3.455469 GCCACAATGCCTCCCTGC 61.455 66.667 0.00 0.00 0.00 4.85
1527 7323 0.523072 CCTTCCCTTGCATGTTGTCG 59.477 55.000 0.00 0.00 0.00 4.35
1635 7432 2.025156 GCGCATATGCCTGCACAC 59.975 61.111 21.77 0.00 42.40 3.82
1667 7464 7.062749 ACAATGGAAGACAAGTACTACAGAA 57.937 36.000 0.00 0.00 0.00 3.02
1699 7504 6.692486 ACACAGAACTTCCTAGTCAGTATTG 58.308 40.000 0.00 0.00 31.99 1.90
1711 7516 7.097834 AGTACTAGCAAATACACAGAACTTCC 58.902 38.462 0.00 0.00 0.00 3.46
1718 7523 8.171196 CACATCAAAGTACTAGCAAATACACAG 58.829 37.037 0.00 0.00 0.00 3.66
1754 7562 0.165944 CGTCTAGCGCCCAAAAACTG 59.834 55.000 2.29 0.00 0.00 3.16
1773 7581 5.514204 GCACTGATTCATCTGTAATTTGCAC 59.486 40.000 0.00 0.00 37.23 4.57
1793 7601 6.919662 CACAATCAGAAAGTAAATGTTGCACT 59.080 34.615 0.00 0.00 0.00 4.40
1800 7608 8.567948 ACTTACCACACAATCAGAAAGTAAATG 58.432 33.333 0.00 0.00 0.00 2.32
1810 7618 8.731275 TCCAAATATACTTACCACACAATCAG 57.269 34.615 0.00 0.00 0.00 2.90
1870 7678 7.568199 AATCGCTAACCATTTTACAGCTATT 57.432 32.000 0.00 0.00 0.00 1.73
1871 7679 7.568199 AAATCGCTAACCATTTTACAGCTAT 57.432 32.000 0.00 0.00 0.00 2.97
1872 7680 6.995511 AAATCGCTAACCATTTTACAGCTA 57.004 33.333 0.00 0.00 0.00 3.32
1873 7681 5.897377 AAATCGCTAACCATTTTACAGCT 57.103 34.783 0.00 0.00 0.00 4.24
1874 7682 5.288472 CCAAAATCGCTAACCATTTTACAGC 59.712 40.000 0.00 0.00 32.18 4.40
1875 7683 6.616947 TCCAAAATCGCTAACCATTTTACAG 58.383 36.000 0.00 0.00 32.18 2.74
1876 7684 6.576662 TCCAAAATCGCTAACCATTTTACA 57.423 33.333 0.00 0.00 32.18 2.41
1877 7685 6.033091 CGTTCCAAAATCGCTAACCATTTTAC 59.967 38.462 0.00 0.00 32.18 2.01
1878 7686 6.087522 CGTTCCAAAATCGCTAACCATTTTA 58.912 36.000 0.00 0.00 32.18 1.52
1879 7687 4.920927 CGTTCCAAAATCGCTAACCATTTT 59.079 37.500 0.00 0.00 33.37 1.82
1884 7692 2.078392 TCCGTTCCAAAATCGCTAACC 58.922 47.619 0.00 0.00 0.00 2.85
1888 7696 1.539827 CCTTTCCGTTCCAAAATCGCT 59.460 47.619 0.00 0.00 0.00 4.93
1893 7701 4.211920 AGAACATCCTTTCCGTTCCAAAA 58.788 39.130 0.00 0.00 39.89 2.44
1921 7729 7.549488 ACGAAACCAAACAATAATCCACAAAAA 59.451 29.630 0.00 0.00 0.00 1.94
1956 7764 2.224769 TGGATCAAGGGAGTTCCACAAC 60.225 50.000 0.00 0.00 38.24 3.32
2090 7899 3.899052 ATCCAGGCATTTTCACCAATG 57.101 42.857 0.00 0.00 37.23 2.82
2140 7951 2.783135 AGCATCGTCCAGAACACAAAT 58.217 42.857 0.00 0.00 0.00 2.32
2218 8029 8.503196 GTTTTGATTTCTGAAAAACCACAAAGT 58.497 29.630 6.95 0.00 37.67 2.66
2247 8059 7.123397 TGTCTGAGAAGTGAAGAACTAGCATAT 59.877 37.037 0.00 0.00 38.56 1.78
2255 8067 5.195001 AGTCTGTCTGAGAAGTGAAGAAC 57.805 43.478 0.00 0.00 30.26 3.01
2274 8086 6.315144 GGATTCCTCTTAAGCTTCTTCAAGTC 59.685 42.308 0.00 0.00 31.45 3.01
2307 8119 2.979813 CGCTAACACTTGGCATTTTCAC 59.020 45.455 0.00 0.00 36.91 3.18
2311 8123 1.200020 GCTCGCTAACACTTGGCATTT 59.800 47.619 0.00 0.00 36.91 2.32
2339 8151 1.135083 ACGCCGACTAAAGGATGAGTG 60.135 52.381 0.00 0.00 0.00 3.51
2374 8186 1.595655 TGCAACAAAGGAGCGCGTA 60.596 52.632 8.43 0.00 0.00 4.42
2407 8219 9.811655 CATAAGTTGTGACATGTACTTTTACTG 57.188 33.333 15.08 6.69 33.28 2.74
2416 8228 4.941263 GCCTTCCATAAGTTGTGACATGTA 59.059 41.667 0.00 0.00 0.00 2.29
2422 8234 4.365514 TTGAGCCTTCCATAAGTTGTGA 57.634 40.909 0.47 0.00 0.00 3.58
2423 8235 4.142315 CCATTGAGCCTTCCATAAGTTGTG 60.142 45.833 0.00 0.00 0.00 3.33
2424 8236 4.019174 CCATTGAGCCTTCCATAAGTTGT 58.981 43.478 0.00 0.00 0.00 3.32
2425 8237 3.181483 GCCATTGAGCCTTCCATAAGTTG 60.181 47.826 0.00 0.00 0.00 3.16
2427 8239 2.025037 TGCCATTGAGCCTTCCATAAGT 60.025 45.455 0.00 0.00 0.00 2.24
2428 8240 2.658285 TGCCATTGAGCCTTCCATAAG 58.342 47.619 0.00 0.00 0.00 1.73
2429 8241 2.760092 GTTGCCATTGAGCCTTCCATAA 59.240 45.455 0.00 0.00 0.00 1.90
2430 8242 2.025037 AGTTGCCATTGAGCCTTCCATA 60.025 45.455 0.00 0.00 0.00 2.74
2431 8243 1.188863 GTTGCCATTGAGCCTTCCAT 58.811 50.000 0.00 0.00 0.00 3.41
2432 8244 0.112995 AGTTGCCATTGAGCCTTCCA 59.887 50.000 0.00 0.00 0.00 3.53
2433 8245 0.529378 CAGTTGCCATTGAGCCTTCC 59.471 55.000 0.00 0.00 0.00 3.46
2434 8246 0.529378 CCAGTTGCCATTGAGCCTTC 59.471 55.000 0.00 0.00 0.00 3.46
2435 8247 0.178953 ACCAGTTGCCATTGAGCCTT 60.179 50.000 0.00 0.00 0.00 4.35
2436 8248 0.896940 CACCAGTTGCCATTGAGCCT 60.897 55.000 0.00 0.00 0.00 4.58
2437 8249 1.181098 ACACCAGTTGCCATTGAGCC 61.181 55.000 0.00 0.00 0.00 4.70
2438 8250 1.533625 TACACCAGTTGCCATTGAGC 58.466 50.000 0.00 0.00 0.00 4.26
2439 8251 2.424601 CCATACACCAGTTGCCATTGAG 59.575 50.000 0.00 0.00 0.00 3.02
2440 8252 2.040947 TCCATACACCAGTTGCCATTGA 59.959 45.455 0.00 0.00 0.00 2.57
2441 8253 2.445427 TCCATACACCAGTTGCCATTG 58.555 47.619 0.00 0.00 0.00 2.82
2442 8254 2.897271 TCCATACACCAGTTGCCATT 57.103 45.000 0.00 0.00 0.00 3.16
2443 8255 3.025978 CAATCCATACACCAGTTGCCAT 58.974 45.455 0.00 0.00 0.00 4.40
2444 8256 2.224992 ACAATCCATACACCAGTTGCCA 60.225 45.455 0.00 0.00 0.00 4.92
2445 8257 2.446435 ACAATCCATACACCAGTTGCC 58.554 47.619 0.00 0.00 0.00 4.52
2446 8258 4.485163 GAAACAATCCATACACCAGTTGC 58.515 43.478 0.00 0.00 0.00 4.17
2460 8272 6.316390 CCATTACTAGTCCAGTGGAAACAATC 59.684 42.308 15.09 0.00 46.06 2.67
2461 8273 6.180472 CCATTACTAGTCCAGTGGAAACAAT 58.820 40.000 15.09 6.67 46.06 2.71
2462 8274 5.072600 ACCATTACTAGTCCAGTGGAAACAA 59.927 40.000 15.09 4.49 46.06 2.83
2463 8275 4.595781 ACCATTACTAGTCCAGTGGAAACA 59.404 41.667 15.09 0.62 38.24 2.83
2464 8276 5.161943 ACCATTACTAGTCCAGTGGAAAC 57.838 43.478 15.09 2.66 38.24 2.78
2465 8277 6.442564 ACATACCATTACTAGTCCAGTGGAAA 59.557 38.462 15.09 4.35 38.24 3.13
2466 8278 5.962031 ACATACCATTACTAGTCCAGTGGAA 59.038 40.000 15.09 0.00 38.24 3.53
2467 8279 5.525484 ACATACCATTACTAGTCCAGTGGA 58.475 41.667 8.12 8.12 38.24 4.02
2468 8280 5.871396 ACATACCATTACTAGTCCAGTGG 57.129 43.478 1.40 1.40 38.24 4.00
2469 8281 7.492669 CAGAAACATACCATTACTAGTCCAGTG 59.507 40.741 0.00 0.00 38.24 3.66
2470 8282 7.556844 CAGAAACATACCATTACTAGTCCAGT 58.443 38.462 0.00 0.00 41.62 4.00
2471 8283 6.480320 GCAGAAACATACCATTACTAGTCCAG 59.520 42.308 0.00 0.00 0.00 3.86
2472 8284 6.156256 AGCAGAAACATACCATTACTAGTCCA 59.844 38.462 0.00 0.00 0.00 4.02
2473 8285 6.583562 AGCAGAAACATACCATTACTAGTCC 58.416 40.000 0.00 0.00 0.00 3.85
2474 8286 7.764443 TGAAGCAGAAACATACCATTACTAGTC 59.236 37.037 0.00 0.00 0.00 2.59
2475 8287 7.620880 TGAAGCAGAAACATACCATTACTAGT 58.379 34.615 0.00 0.00 0.00 2.57
2476 8288 8.492673 TTGAAGCAGAAACATACCATTACTAG 57.507 34.615 0.00 0.00 0.00 2.57
2477 8289 8.318412 TCTTGAAGCAGAAACATACCATTACTA 58.682 33.333 0.00 0.00 0.00 1.82
2478 8290 7.119846 GTCTTGAAGCAGAAACATACCATTACT 59.880 37.037 0.00 0.00 0.00 2.24
2479 8291 7.244192 GTCTTGAAGCAGAAACATACCATTAC 58.756 38.462 0.00 0.00 0.00 1.89
2480 8292 6.374333 GGTCTTGAAGCAGAAACATACCATTA 59.626 38.462 0.00 0.00 0.00 1.90
2481 8293 5.183904 GGTCTTGAAGCAGAAACATACCATT 59.816 40.000 0.00 0.00 0.00 3.16
2482 8294 4.702131 GGTCTTGAAGCAGAAACATACCAT 59.298 41.667 0.00 0.00 0.00 3.55
2483 8295 4.072131 GGTCTTGAAGCAGAAACATACCA 58.928 43.478 0.00 0.00 0.00 3.25
2484 8296 4.072131 TGGTCTTGAAGCAGAAACATACC 58.928 43.478 0.00 0.00 0.00 2.73
2485 8297 4.757149 AGTGGTCTTGAAGCAGAAACATAC 59.243 41.667 0.00 0.00 35.67 2.39
2486 8298 4.973168 AGTGGTCTTGAAGCAGAAACATA 58.027 39.130 0.00 0.00 35.67 2.29
2487 8299 3.825328 AGTGGTCTTGAAGCAGAAACAT 58.175 40.909 0.00 0.00 35.67 2.71
2488 8300 3.281727 AGTGGTCTTGAAGCAGAAACA 57.718 42.857 0.00 0.00 35.67 2.83
2489 8301 7.617041 AATATAGTGGTCTTGAAGCAGAAAC 57.383 36.000 0.00 0.00 35.67 2.78
2515 8327 9.953565 ACTTTGCTAGTATACTCCAACAAAATA 57.046 29.630 9.12 0.00 34.56 1.40
2516 8328 8.730680 CACTTTGCTAGTATACTCCAACAAAAT 58.269 33.333 9.12 3.71 34.56 1.82
2517 8329 7.308348 GCACTTTGCTAGTATACTCCAACAAAA 60.308 37.037 9.12 2.94 40.96 2.44
2518 8330 6.148811 GCACTTTGCTAGTATACTCCAACAAA 59.851 38.462 9.12 13.61 40.96 2.83
2519 8331 5.642063 GCACTTTGCTAGTATACTCCAACAA 59.358 40.000 9.12 7.12 40.96 2.83
2520 8332 5.175859 GCACTTTGCTAGTATACTCCAACA 58.824 41.667 9.12 0.93 40.96 3.33
2521 8333 4.571176 GGCACTTTGCTAGTATACTCCAAC 59.429 45.833 9.12 3.05 44.28 3.77
2522 8334 4.383770 GGGCACTTTGCTAGTATACTCCAA 60.384 45.833 9.12 11.21 44.28 3.53
2523 8335 3.134081 GGGCACTTTGCTAGTATACTCCA 59.866 47.826 9.12 5.38 44.28 3.86
2524 8336 3.134081 TGGGCACTTTGCTAGTATACTCC 59.866 47.826 9.12 2.61 44.28 3.85
2525 8337 4.402056 TGGGCACTTTGCTAGTATACTC 57.598 45.455 9.12 0.00 44.28 2.59
2526 8338 4.164221 ACATGGGCACTTTGCTAGTATACT 59.836 41.667 10.87 10.87 44.28 2.12
2527 8339 4.273480 CACATGGGCACTTTGCTAGTATAC 59.727 45.833 0.00 0.00 44.28 1.47
2528 8340 4.080582 ACACATGGGCACTTTGCTAGTATA 60.081 41.667 0.00 0.00 44.28 1.47
2529 8341 3.282021 CACATGGGCACTTTGCTAGTAT 58.718 45.455 0.00 0.00 44.28 2.12
2530 8342 2.039746 ACACATGGGCACTTTGCTAGTA 59.960 45.455 0.00 0.00 44.28 1.82
2531 8343 1.202927 ACACATGGGCACTTTGCTAGT 60.203 47.619 0.00 0.00 44.28 2.57
2532 8344 1.538047 ACACATGGGCACTTTGCTAG 58.462 50.000 0.00 0.00 44.28 3.42
2533 8345 1.612950 CAACACATGGGCACTTTGCTA 59.387 47.619 0.00 0.00 44.28 3.49
2534 8346 0.390124 CAACACATGGGCACTTTGCT 59.610 50.000 0.00 0.00 44.28 3.91
2535 8347 1.223417 GCAACACATGGGCACTTTGC 61.223 55.000 5.38 5.38 44.08 3.68
2536 8348 0.104487 TGCAACACATGGGCACTTTG 59.896 50.000 0.00 0.00 31.58 2.77
2537 8349 0.829333 TTGCAACACATGGGCACTTT 59.171 45.000 0.00 0.00 37.26 2.66
2538 8350 0.104671 GTTGCAACACATGGGCACTT 59.895 50.000 24.52 0.00 37.26 3.16
2539 8351 1.741525 GTTGCAACACATGGGCACT 59.258 52.632 24.52 0.00 37.26 4.40
2540 8352 1.661197 CGTTGCAACACATGGGCAC 60.661 57.895 28.01 0.00 37.26 5.01
2541 8353 2.726909 CGTTGCAACACATGGGCA 59.273 55.556 28.01 0.00 35.41 5.36
2542 8354 2.734346 GCGTTGCAACACATGGGC 60.734 61.111 28.01 18.07 0.00 5.36
2543 8355 2.428902 CGCGTTGCAACACATGGG 60.429 61.111 28.01 16.01 0.00 4.00
2544 8356 1.440850 CTCGCGTTGCAACACATGG 60.441 57.895 28.01 13.09 0.00 3.66
2545 8357 0.041400 TTCTCGCGTTGCAACACATG 60.041 50.000 28.01 13.45 0.00 3.21
2546 8358 0.660488 TTTCTCGCGTTGCAACACAT 59.340 45.000 28.01 0.00 0.00 3.21
2547 8359 0.448197 TTTTCTCGCGTTGCAACACA 59.552 45.000 28.01 10.71 0.00 3.72
2548 8360 1.540407 TTTTTCTCGCGTTGCAACAC 58.460 45.000 28.01 18.43 0.00 3.32
2549 8361 3.998924 TTTTTCTCGCGTTGCAACA 57.001 42.105 28.01 9.07 0.00 3.33
2565 8377 4.218200 TCATCTCCGCAACATGTCATTTTT 59.782 37.500 0.00 0.00 0.00 1.94
2566 8378 3.758023 TCATCTCCGCAACATGTCATTTT 59.242 39.130 0.00 0.00 0.00 1.82
2567 8379 3.346315 TCATCTCCGCAACATGTCATTT 58.654 40.909 0.00 0.00 0.00 2.32
2568 8380 2.941064 CTCATCTCCGCAACATGTCATT 59.059 45.455 0.00 0.00 0.00 2.57
2569 8381 2.558378 CTCATCTCCGCAACATGTCAT 58.442 47.619 0.00 0.00 0.00 3.06
2570 8382 1.405933 CCTCATCTCCGCAACATGTCA 60.406 52.381 0.00 0.00 0.00 3.58
2571 8383 1.293924 CCTCATCTCCGCAACATGTC 58.706 55.000 0.00 0.00 0.00 3.06
2572 8384 0.615331 ACCTCATCTCCGCAACATGT 59.385 50.000 0.00 0.00 0.00 3.21
2573 8385 1.399440 CAACCTCATCTCCGCAACATG 59.601 52.381 0.00 0.00 0.00 3.21
2574 8386 1.003580 ACAACCTCATCTCCGCAACAT 59.996 47.619 0.00 0.00 0.00 2.71
2575 8387 0.396435 ACAACCTCATCTCCGCAACA 59.604 50.000 0.00 0.00 0.00 3.33
2576 8388 0.798776 CACAACCTCATCTCCGCAAC 59.201 55.000 0.00 0.00 0.00 4.17
2577 8389 0.955428 GCACAACCTCATCTCCGCAA 60.955 55.000 0.00 0.00 0.00 4.85
2578 8390 1.375908 GCACAACCTCATCTCCGCA 60.376 57.895 0.00 0.00 0.00 5.69
2579 8391 0.955428 TTGCACAACCTCATCTCCGC 60.955 55.000 0.00 0.00 0.00 5.54
2580 8392 1.081892 CTTGCACAACCTCATCTCCG 58.918 55.000 0.00 0.00 0.00 4.63
2581 8393 1.271597 ACCTTGCACAACCTCATCTCC 60.272 52.381 0.00 0.00 0.00 3.71
2582 8394 1.808945 CACCTTGCACAACCTCATCTC 59.191 52.381 0.00 0.00 0.00 2.75
2583 8395 1.901591 CACCTTGCACAACCTCATCT 58.098 50.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.