Multiple sequence alignment - TraesCS3A01G058100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G058100 chr3A 100.000 6128 0 0 1 6128 34519261 34525388 0.000000e+00 11317.0
1 TraesCS3A01G058100 chr3A 100.000 54 0 0 116 169 743570866 743570919 3.910000e-17 100.0
2 TraesCS3A01G058100 chr3A 96.154 52 1 1 6077 6128 749615021 749614971 3.940000e-12 84.2
3 TraesCS3A01G058100 chr3D 90.805 5775 338 107 182 5857 25121766 25127446 0.000000e+00 7544.0
4 TraesCS3A01G058100 chr3D 93.469 245 5 6 5849 6083 25127823 25128066 2.720000e-93 353.0
5 TraesCS3A01G058100 chr3B 89.433 5205 298 128 275 5396 42561223 42566258 0.000000e+00 6333.0
6 TraesCS3A01G058100 chr3B 91.463 82 6 1 6002 6083 42567518 42567598 1.810000e-20 111.0
7 TraesCS3A01G058100 chr3B 100.000 46 0 0 6083 6128 39445639 39445684 1.090000e-12 86.1
8 TraesCS3A01G058100 chr1A 85.246 1586 167 40 3497 5063 20968244 20966707 0.000000e+00 1570.0
9 TraesCS3A01G058100 chr6B 97.633 169 0 1 1 169 462154661 462154825 2.800000e-73 287.0
10 TraesCS3A01G058100 chr6B 97.633 169 1 1 1 169 719679367 719679202 2.800000e-73 287.0
11 TraesCS3A01G058100 chr6B 94.737 57 0 3 6074 6128 666222546 666222601 1.090000e-12 86.1
12 TraesCS3A01G058100 chr5B 86.982 169 16 6 1 169 429305115 429305277 1.050000e-42 185.0
13 TraesCS3A01G058100 chr5A 86.550 171 16 6 1 170 599465580 599465416 1.360000e-41 182.0
14 TraesCS3A01G058100 chr5A 91.935 62 5 0 5689 5750 355160535 355160474 3.040000e-13 87.9
15 TraesCS3A01G058100 chr5A 100.000 46 0 0 6083 6128 276646158 276646203 1.090000e-12 86.1
16 TraesCS3A01G058100 chr2B 86.310 168 13 6 1 167 23717402 23717560 2.270000e-39 174.0
17 TraesCS3A01G058100 chr2B 84.615 169 18 8 2 169 742166864 742166703 1.770000e-35 161.0
18 TraesCS3A01G058100 chr2B 93.750 96 5 1 1 96 138077053 138077147 6.400000e-30 143.0
19 TraesCS3A01G058100 chr2B 95.122 41 2 0 586 626 219256069 219256109 1.430000e-06 65.8
20 TraesCS3A01G058100 chr2B 95.122 41 2 0 586 626 704752142 704752182 1.430000e-06 65.8
21 TraesCS3A01G058100 chr7B 84.746 177 18 4 1 175 678342292 678342461 1.060000e-37 169.0
22 TraesCS3A01G058100 chr7B 93.478 46 3 0 586 631 701305516 701305471 1.100000e-07 69.4
23 TraesCS3A01G058100 chrUn 83.234 167 22 6 1 167 41850394 41850234 1.380000e-31 148.0
24 TraesCS3A01G058100 chr6D 89.216 102 9 2 1 102 363008956 363009055 6.450000e-25 126.0
25 TraesCS3A01G058100 chr2A 81.818 143 21 4 29 169 726570184 726570045 1.400000e-21 115.0
26 TraesCS3A01G058100 chr7D 100.000 46 0 0 6083 6128 264323595 264323550 1.090000e-12 86.1
27 TraesCS3A01G058100 chr6A 100.000 46 0 0 6083 6128 86405586 86405541 1.090000e-12 86.1
28 TraesCS3A01G058100 chr4A 96.154 52 2 0 6077 6128 171633588 171633639 1.090000e-12 86.1
29 TraesCS3A01G058100 chr4A 94.545 55 1 2 6075 6128 38289473 38289526 3.940000e-12 84.2
30 TraesCS3A01G058100 chr4D 94.231 52 3 0 6077 6128 391722676 391722727 5.090000e-11 80.5
31 TraesCS3A01G058100 chr7A 93.478 46 3 0 586 631 701721605 701721560 1.100000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G058100 chr3A 34519261 34525388 6127 False 11317.0 11317 100.000 1 6128 1 chr3A.!!$F1 6127
1 TraesCS3A01G058100 chr3D 25121766 25128066 6300 False 3948.5 7544 92.137 182 6083 2 chr3D.!!$F1 5901
2 TraesCS3A01G058100 chr3B 42561223 42567598 6375 False 3222.0 6333 90.448 275 6083 2 chr3B.!!$F2 5808
3 TraesCS3A01G058100 chr1A 20966707 20968244 1537 True 1570.0 1570 85.246 3497 5063 1 chr1A.!!$R1 1566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.107508 CTATGCTGAGGTGGGGTGTG 60.108 60.0 0.0 0.0 0.00 3.82 F
709 786 0.108472 TGGCTGCTCTGAATCTGACG 60.108 55.0 0.0 0.0 0.00 4.35 F
710 787 0.174389 GGCTGCTCTGAATCTGACGA 59.826 55.0 0.0 0.0 0.00 4.20 F
2366 2506 0.473755 TGGCAAAGGCTGAACTGAGA 59.526 50.0 0.0 0.0 40.87 3.27 F
2498 2638 0.607489 ATGCTGGCTTTCTTGCGAGT 60.607 50.0 0.0 0.0 40.22 4.18 F
2782 2922 0.887933 AAATGGTGCCGTTAAGCCTG 59.112 50.0 0.0 0.0 0.00 4.85 F
3132 3275 1.022735 CGTACCTCATCTACCGCTGT 58.977 55.0 0.0 0.0 0.00 4.40 F
4732 4909 0.790207 CCCAACACACACGATCTTCG 59.210 55.0 0.0 0.0 46.93 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1815 0.175989 TGCGACACACACCAGTACAA 59.824 50.000 0.00 0.0 0.00 2.41 R
2532 2672 0.179089 CTCCTCCATCCTGCTCAACG 60.179 60.000 0.00 0.0 0.00 4.10 R
2538 2678 0.545646 AGCTTTCTCCTCCATCCTGC 59.454 55.000 0.00 0.0 0.00 4.85 R
3423 3566 0.108138 GGTGAGTTGAGGGACGATGG 60.108 60.000 0.00 0.0 0.00 3.51 R
3843 3986 1.306141 TTCCTCTGGGGCTGACGAT 60.306 57.895 0.00 0.0 34.39 3.73 R
4715 4879 0.858583 TGCGAAGATCGTGTGTGTTG 59.141 50.000 1.45 0.0 42.81 3.33 R
4911 5089 0.323816 GAAAAGAAGGGGGAGGCTGG 60.324 60.000 0.00 0.0 0.00 4.85 R
5673 6520 0.250901 ATGGCCCTTCTGTGTCACAC 60.251 55.000 0.00 0.0 34.56 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.103013 GGGGTTTTACAGGACCTTTACA 57.897 45.455 0.00 0.00 36.18 2.41
22 23 4.077108 GGGGTTTTACAGGACCTTTACAG 58.923 47.826 0.00 0.00 36.18 2.74
24 25 3.504906 GGTTTTACAGGACCTTTACAGGC 59.495 47.826 0.00 0.00 45.56 4.85
25 26 4.395625 GTTTTACAGGACCTTTACAGGCT 58.604 43.478 0.00 0.00 45.56 4.58
26 27 5.513614 GGTTTTACAGGACCTTTACAGGCTA 60.514 44.000 0.00 0.00 45.56 3.93
27 28 6.178324 GTTTTACAGGACCTTTACAGGCTAT 58.822 40.000 0.00 0.00 45.56 2.97
28 29 3.914426 ACAGGACCTTTACAGGCTATG 57.086 47.619 0.00 0.00 45.56 2.23
29 30 2.092914 ACAGGACCTTTACAGGCTATGC 60.093 50.000 0.00 0.00 45.56 3.14
30 31 2.171448 CAGGACCTTTACAGGCTATGCT 59.829 50.000 0.00 0.00 45.56 3.79
31 32 2.171448 AGGACCTTTACAGGCTATGCTG 59.829 50.000 0.00 0.00 45.56 4.41
32 33 2.170607 GGACCTTTACAGGCTATGCTGA 59.829 50.000 0.00 0.00 45.56 4.26
33 34 3.462021 GACCTTTACAGGCTATGCTGAG 58.538 50.000 0.00 0.00 45.56 3.35
34 35 2.171448 ACCTTTACAGGCTATGCTGAGG 59.829 50.000 0.00 0.00 45.56 3.86
35 36 2.171448 CCTTTACAGGCTATGCTGAGGT 59.829 50.000 0.00 0.00 31.53 3.85
36 37 2.988010 TTACAGGCTATGCTGAGGTG 57.012 50.000 0.00 0.00 0.00 4.00
37 38 1.123077 TACAGGCTATGCTGAGGTGG 58.877 55.000 0.00 0.00 0.00 4.61
38 39 1.147824 CAGGCTATGCTGAGGTGGG 59.852 63.158 0.00 0.00 0.00 4.61
39 40 2.074948 AGGCTATGCTGAGGTGGGG 61.075 63.158 0.00 0.00 0.00 4.96
40 41 2.378634 GGCTATGCTGAGGTGGGGT 61.379 63.158 0.00 0.00 0.00 4.95
41 42 1.153086 GCTATGCTGAGGTGGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
42 43 1.915078 GCTATGCTGAGGTGGGGTGT 61.915 60.000 0.00 0.00 0.00 4.16
43 44 0.107508 CTATGCTGAGGTGGGGTGTG 60.108 60.000 0.00 0.00 0.00 3.82
44 45 0.840288 TATGCTGAGGTGGGGTGTGT 60.840 55.000 0.00 0.00 0.00 3.72
45 46 1.719063 ATGCTGAGGTGGGGTGTGTT 61.719 55.000 0.00 0.00 0.00 3.32
46 47 1.898574 GCTGAGGTGGGGTGTGTTG 60.899 63.158 0.00 0.00 0.00 3.33
47 48 1.836391 CTGAGGTGGGGTGTGTTGA 59.164 57.895 0.00 0.00 0.00 3.18
48 49 0.401738 CTGAGGTGGGGTGTGTTGAT 59.598 55.000 0.00 0.00 0.00 2.57
49 50 0.850100 TGAGGTGGGGTGTGTTGATT 59.150 50.000 0.00 0.00 0.00 2.57
50 51 1.247567 GAGGTGGGGTGTGTTGATTG 58.752 55.000 0.00 0.00 0.00 2.67
51 52 0.178964 AGGTGGGGTGTGTTGATTGG 60.179 55.000 0.00 0.00 0.00 3.16
52 53 0.469144 GGTGGGGTGTGTTGATTGGT 60.469 55.000 0.00 0.00 0.00 3.67
53 54 1.408969 GTGGGGTGTGTTGATTGGTT 58.591 50.000 0.00 0.00 0.00 3.67
54 55 1.068434 GTGGGGTGTGTTGATTGGTTG 59.932 52.381 0.00 0.00 0.00 3.77
55 56 1.342474 TGGGGTGTGTTGATTGGTTGT 60.342 47.619 0.00 0.00 0.00 3.32
56 57 1.760029 GGGGTGTGTTGATTGGTTGTT 59.240 47.619 0.00 0.00 0.00 2.83
57 58 2.959707 GGGGTGTGTTGATTGGTTGTTA 59.040 45.455 0.00 0.00 0.00 2.41
58 59 3.385111 GGGGTGTGTTGATTGGTTGTTAA 59.615 43.478 0.00 0.00 0.00 2.01
59 60 4.500716 GGGGTGTGTTGATTGGTTGTTAAG 60.501 45.833 0.00 0.00 0.00 1.85
60 61 4.339814 GGGTGTGTTGATTGGTTGTTAAGA 59.660 41.667 0.00 0.00 0.00 2.10
61 62 5.010617 GGGTGTGTTGATTGGTTGTTAAGAT 59.989 40.000 0.00 0.00 0.00 2.40
62 63 5.920273 GGTGTGTTGATTGGTTGTTAAGATG 59.080 40.000 0.00 0.00 0.00 2.90
63 64 6.238897 GGTGTGTTGATTGGTTGTTAAGATGA 60.239 38.462 0.00 0.00 0.00 2.92
64 65 7.199766 GTGTGTTGATTGGTTGTTAAGATGAA 58.800 34.615 0.00 0.00 0.00 2.57
65 66 7.379529 GTGTGTTGATTGGTTGTTAAGATGAAG 59.620 37.037 0.00 0.00 0.00 3.02
66 67 6.363357 GTGTTGATTGGTTGTTAAGATGAAGC 59.637 38.462 0.00 0.00 0.00 3.86
67 68 5.295431 TGATTGGTTGTTAAGATGAAGCG 57.705 39.130 0.00 0.00 0.00 4.68
68 69 4.155826 TGATTGGTTGTTAAGATGAAGCGG 59.844 41.667 0.00 0.00 0.00 5.52
69 70 2.432444 TGGTTGTTAAGATGAAGCGGG 58.568 47.619 0.00 0.00 0.00 6.13
70 71 1.132453 GGTTGTTAAGATGAAGCGGGC 59.868 52.381 0.00 0.00 0.00 6.13
71 72 1.132453 GTTGTTAAGATGAAGCGGGCC 59.868 52.381 0.00 0.00 0.00 5.80
72 73 0.393808 TGTTAAGATGAAGCGGGCCC 60.394 55.000 13.57 13.57 0.00 5.80
73 74 1.101635 GTTAAGATGAAGCGGGCCCC 61.102 60.000 18.66 9.47 0.00 5.80
74 75 1.567208 TTAAGATGAAGCGGGCCCCA 61.567 55.000 18.66 8.87 0.00 4.96
75 76 2.265467 TAAGATGAAGCGGGCCCCAC 62.265 60.000 18.66 9.13 0.00 4.61
85 86 4.034246 GGCCCCACCCTGAAAATC 57.966 61.111 0.00 0.00 0.00 2.17
86 87 1.078347 GGCCCCACCCTGAAAATCA 59.922 57.895 0.00 0.00 0.00 2.57
87 88 0.972471 GGCCCCACCCTGAAAATCAG 60.972 60.000 0.00 0.32 43.91 2.90
92 93 4.614726 CCCACCCTGAAAATCAGAGGGG 62.615 59.091 17.50 12.00 44.51 4.79
93 94 4.614726 CCACCCTGAAAATCAGAGGGGG 62.615 59.091 16.64 16.64 41.57 5.40
112 113 3.375499 GGGGGAGGGGAGAGAGAT 58.625 66.667 0.00 0.00 0.00 2.75
113 114 1.635051 GGGGGAGGGGAGAGAGATT 59.365 63.158 0.00 0.00 0.00 2.40
114 115 0.868186 GGGGGAGGGGAGAGAGATTA 59.132 60.000 0.00 0.00 0.00 1.75
115 116 1.203250 GGGGGAGGGGAGAGAGATTAG 60.203 61.905 0.00 0.00 0.00 1.73
116 117 1.505977 GGGGAGGGGAGAGAGATTAGT 59.494 57.143 0.00 0.00 0.00 2.24
117 118 2.604139 GGGAGGGGAGAGAGATTAGTG 58.396 57.143 0.00 0.00 0.00 2.74
118 119 2.178106 GGGAGGGGAGAGAGATTAGTGA 59.822 54.545 0.00 0.00 0.00 3.41
119 120 3.496331 GGAGGGGAGAGAGATTAGTGAG 58.504 54.545 0.00 0.00 0.00 3.51
120 121 3.496331 GAGGGGAGAGAGATTAGTGAGG 58.504 54.545 0.00 0.00 0.00 3.86
121 122 2.178984 AGGGGAGAGAGATTAGTGAGGG 59.821 54.545 0.00 0.00 0.00 4.30
122 123 2.604139 GGGAGAGAGATTAGTGAGGGG 58.396 57.143 0.00 0.00 0.00 4.79
123 124 2.178106 GGGAGAGAGATTAGTGAGGGGA 59.822 54.545 0.00 0.00 0.00 4.81
124 125 3.496331 GGAGAGAGATTAGTGAGGGGAG 58.504 54.545 0.00 0.00 0.00 4.30
125 126 3.117284 GGAGAGAGATTAGTGAGGGGAGT 60.117 52.174 0.00 0.00 0.00 3.85
126 127 4.142038 GAGAGAGATTAGTGAGGGGAGTC 58.858 52.174 0.00 0.00 0.00 3.36
127 128 3.117284 AGAGAGATTAGTGAGGGGAGTCC 60.117 52.174 0.00 0.00 0.00 3.85
128 129 1.957877 GAGATTAGTGAGGGGAGTCCG 59.042 57.143 2.26 0.00 41.52 4.79
129 130 1.288335 AGATTAGTGAGGGGAGTCCGT 59.712 52.381 2.26 0.00 41.52 4.69
130 131 2.108970 GATTAGTGAGGGGAGTCCGTT 58.891 52.381 2.26 0.00 41.52 4.44
131 132 2.905415 TTAGTGAGGGGAGTCCGTTA 57.095 50.000 2.26 0.00 41.52 3.18
132 133 2.905415 TAGTGAGGGGAGTCCGTTAA 57.095 50.000 2.26 0.00 41.52 2.01
133 134 1.264295 AGTGAGGGGAGTCCGTTAAC 58.736 55.000 2.26 0.00 41.52 2.01
134 135 1.203149 AGTGAGGGGAGTCCGTTAACT 60.203 52.381 2.26 1.79 41.52 2.24
135 136 1.204231 GTGAGGGGAGTCCGTTAACTC 59.796 57.143 2.26 6.33 44.08 3.01
136 137 1.076677 TGAGGGGAGTCCGTTAACTCT 59.923 52.381 2.26 0.00 44.21 3.24
137 138 2.177734 GAGGGGAGTCCGTTAACTCTT 58.822 52.381 2.26 0.00 44.21 2.85
138 139 1.900486 AGGGGAGTCCGTTAACTCTTG 59.100 52.381 2.26 0.00 44.21 3.02
139 140 1.622312 GGGGAGTCCGTTAACTCTTGT 59.378 52.381 2.26 0.00 44.21 3.16
140 141 2.827921 GGGGAGTCCGTTAACTCTTGTA 59.172 50.000 2.26 0.00 44.21 2.41
141 142 3.259123 GGGGAGTCCGTTAACTCTTGTAA 59.741 47.826 2.26 0.00 44.21 2.41
142 143 4.262592 GGGGAGTCCGTTAACTCTTGTAAA 60.263 45.833 2.26 0.00 44.21 2.01
143 144 5.299949 GGGAGTCCGTTAACTCTTGTAAAA 58.700 41.667 2.26 0.00 44.21 1.52
144 145 5.407691 GGGAGTCCGTTAACTCTTGTAAAAG 59.592 44.000 2.26 0.00 44.21 2.27
145 146 5.107182 GGAGTCCGTTAACTCTTGTAAAAGC 60.107 44.000 3.71 0.00 44.21 3.51
146 147 5.608449 AGTCCGTTAACTCTTGTAAAAGCT 58.392 37.500 3.71 0.00 0.00 3.74
147 148 6.053650 AGTCCGTTAACTCTTGTAAAAGCTT 58.946 36.000 3.71 0.00 0.00 3.74
148 149 6.202379 AGTCCGTTAACTCTTGTAAAAGCTTC 59.798 38.462 0.00 0.00 0.00 3.86
149 150 5.467735 TCCGTTAACTCTTGTAAAAGCTTCC 59.532 40.000 0.00 0.00 0.00 3.46
150 151 5.334646 CCGTTAACTCTTGTAAAAGCTTCCC 60.335 44.000 0.00 0.00 0.00 3.97
151 152 5.614013 CGTTAACTCTTGTAAAAGCTTCCCG 60.614 44.000 0.00 0.00 0.00 5.14
152 153 3.487120 ACTCTTGTAAAAGCTTCCCGT 57.513 42.857 0.00 0.00 0.00 5.28
153 154 4.612264 ACTCTTGTAAAAGCTTCCCGTA 57.388 40.909 0.00 0.00 0.00 4.02
154 155 4.313282 ACTCTTGTAAAAGCTTCCCGTAC 58.687 43.478 0.00 1.17 0.00 3.67
155 156 3.319755 TCTTGTAAAAGCTTCCCGTACG 58.680 45.455 8.69 8.69 0.00 3.67
156 157 2.818130 TGTAAAAGCTTCCCGTACGT 57.182 45.000 15.21 0.00 0.00 3.57
157 158 2.676076 TGTAAAAGCTTCCCGTACGTC 58.324 47.619 15.21 0.00 0.00 4.34
158 159 2.297033 TGTAAAAGCTTCCCGTACGTCT 59.703 45.455 15.21 0.24 0.00 4.18
159 160 3.505680 TGTAAAAGCTTCCCGTACGTCTA 59.494 43.478 15.21 0.00 0.00 2.59
160 161 2.935481 AAAGCTTCCCGTACGTCTAG 57.065 50.000 15.21 8.75 0.00 2.43
161 162 0.455005 AAGCTTCCCGTACGTCTAGC 59.545 55.000 15.21 17.55 0.00 3.42
162 163 0.679002 AGCTTCCCGTACGTCTAGCA 60.679 55.000 24.79 1.24 0.00 3.49
163 164 0.384669 GCTTCCCGTACGTCTAGCAT 59.615 55.000 20.73 0.00 0.00 3.79
164 165 1.202382 GCTTCCCGTACGTCTAGCATT 60.202 52.381 20.73 0.00 0.00 3.56
165 166 2.737679 GCTTCCCGTACGTCTAGCATTT 60.738 50.000 20.73 0.00 0.00 2.32
166 167 3.518590 CTTCCCGTACGTCTAGCATTTT 58.481 45.455 15.21 0.00 0.00 1.82
167 168 3.598019 TCCCGTACGTCTAGCATTTTT 57.402 42.857 15.21 0.00 0.00 1.94
168 169 3.255725 TCCCGTACGTCTAGCATTTTTG 58.744 45.455 15.21 0.00 0.00 2.44
169 170 2.222953 CCCGTACGTCTAGCATTTTTGC 60.223 50.000 15.21 0.00 0.00 3.68
170 171 2.534150 CCGTACGTCTAGCATTTTTGCG 60.534 50.000 15.21 0.00 40.27 4.85
171 172 2.343246 CGTACGTCTAGCATTTTTGCGA 59.657 45.455 7.22 0.00 40.27 5.10
172 173 3.539592 CGTACGTCTAGCATTTTTGCGAG 60.540 47.826 7.22 2.18 40.27 5.03
173 174 1.732259 ACGTCTAGCATTTTTGCGAGG 59.268 47.619 7.98 2.30 37.96 4.63
174 175 1.529826 CGTCTAGCATTTTTGCGAGGC 60.530 52.381 7.98 5.59 38.48 4.70
175 176 1.094785 TCTAGCATTTTTGCGAGGCC 58.905 50.000 0.00 0.00 37.96 5.19
176 177 0.810648 CTAGCATTTTTGCGAGGCCA 59.189 50.000 5.01 0.00 40.27 5.36
177 178 0.810648 TAGCATTTTTGCGAGGCCAG 59.189 50.000 5.01 0.00 40.27 4.85
178 179 1.181098 AGCATTTTTGCGAGGCCAGT 61.181 50.000 5.01 0.00 40.27 4.00
179 180 1.010419 GCATTTTTGCGAGGCCAGTG 61.010 55.000 5.01 0.00 0.00 3.66
180 181 0.597568 CATTTTTGCGAGGCCAGTGA 59.402 50.000 5.01 0.00 0.00 3.41
212 213 2.612721 GGATGCCGAAACTTTGCCAAAT 60.613 45.455 0.00 0.00 0.00 2.32
214 215 2.478831 TGCCGAAACTTTGCCAAATTC 58.521 42.857 0.00 0.00 0.00 2.17
217 218 3.305744 GCCGAAACTTTGCCAAATTCCTA 60.306 43.478 0.00 0.00 0.00 2.94
218 219 4.234574 CCGAAACTTTGCCAAATTCCTAC 58.765 43.478 0.00 0.00 0.00 3.18
237 238 4.403432 CCTACCCTACGTATGGTTCTTTGA 59.597 45.833 24.83 7.63 36.04 2.69
239 240 3.197116 ACCCTACGTATGGTTCTTTGAGG 59.803 47.826 15.93 1.30 0.00 3.86
247 248 3.297134 TGGTTCTTTGAGGCAAGAAGT 57.703 42.857 0.00 0.00 0.00 3.01
248 249 3.214328 TGGTTCTTTGAGGCAAGAAGTC 58.786 45.455 0.00 0.00 0.00 3.01
260 267 2.419324 GCAAGAAGTCTCTGCTTCCATG 59.581 50.000 2.63 4.24 44.27 3.66
261 268 3.672808 CAAGAAGTCTCTGCTTCCATGT 58.327 45.455 2.63 0.00 44.27 3.21
262 269 4.825422 CAAGAAGTCTCTGCTTCCATGTA 58.175 43.478 2.63 0.00 44.27 2.29
263 270 4.464069 AGAAGTCTCTGCTTCCATGTAC 57.536 45.455 2.63 0.00 44.27 2.90
300 307 6.949352 AATAATCAGAATGTGGATTTCGCT 57.051 33.333 0.00 0.00 37.40 4.93
305 312 1.999735 GAATGTGGATTTCGCTGTCGA 59.000 47.619 0.00 0.00 43.89 4.20
321 328 2.661866 GACGCGCACCACTCAAGT 60.662 61.111 5.73 0.00 0.00 3.16
339 357 0.463474 GTCTGAAGCTCTCCCATGGC 60.463 60.000 6.09 0.00 0.00 4.40
374 392 4.284234 CCATGACATTTTCTTCACCCCTTT 59.716 41.667 0.00 0.00 0.00 3.11
375 393 5.221702 CCATGACATTTTCTTCACCCCTTTT 60.222 40.000 0.00 0.00 0.00 2.27
376 394 5.529581 TGACATTTTCTTCACCCCTTTTC 57.470 39.130 0.00 0.00 0.00 2.29
377 395 5.208121 TGACATTTTCTTCACCCCTTTTCT 58.792 37.500 0.00 0.00 0.00 2.52
379 397 4.588951 ACATTTTCTTCACCCCTTTTCTCC 59.411 41.667 0.00 0.00 0.00 3.71
380 398 2.971901 TTCTTCACCCCTTTTCTCCC 57.028 50.000 0.00 0.00 0.00 4.30
385 403 2.428901 TCACCCCTTTTCTCCCTTTCT 58.571 47.619 0.00 0.00 0.00 2.52
386 404 2.375509 TCACCCCTTTTCTCCCTTTCTC 59.624 50.000 0.00 0.00 0.00 2.87
389 407 3.074687 ACCCCTTTTCTCCCTTTCTCTTC 59.925 47.826 0.00 0.00 0.00 2.87
390 408 3.562393 CCCCTTTTCTCCCTTTCTCTTCC 60.562 52.174 0.00 0.00 0.00 3.46
391 409 3.332187 CCCTTTTCTCCCTTTCTCTTCCT 59.668 47.826 0.00 0.00 0.00 3.36
392 410 4.202620 CCCTTTTCTCCCTTTCTCTTCCTT 60.203 45.833 0.00 0.00 0.00 3.36
393 411 4.764308 CCTTTTCTCCCTTTCTCTTCCTTG 59.236 45.833 0.00 0.00 0.00 3.61
394 412 5.380900 CTTTTCTCCCTTTCTCTTCCTTGT 58.619 41.667 0.00 0.00 0.00 3.16
395 413 6.465894 CCTTTTCTCCCTTTCTCTTCCTTGTA 60.466 42.308 0.00 0.00 0.00 2.41
403 421 8.390921 TCCCTTTCTCTTCCTTGTAAATAATGT 58.609 33.333 0.00 0.00 0.00 2.71
408 426 8.792830 TCTCTTCCTTGTAAATAATGTTCTGG 57.207 34.615 0.00 0.00 0.00 3.86
419 437 2.017668 ATGTTCTGGGGTGGTTGCCA 62.018 55.000 0.00 0.00 0.00 4.92
428 446 3.225798 TGGTTGCCACTTGCCAGC 61.226 61.111 0.00 0.00 40.16 4.85
429 447 3.225798 GGTTGCCACTTGCCAGCA 61.226 61.111 0.00 0.00 40.16 4.41
431 449 2.813901 TTGCCACTTGCCAGCAAC 59.186 55.556 0.00 0.00 41.35 4.17
433 451 1.401318 TTGCCACTTGCCAGCAACAT 61.401 50.000 0.00 0.00 41.35 2.71
438 456 0.963962 ACTTGCCAGCAACATTCCTG 59.036 50.000 0.00 0.00 0.00 3.86
446 464 1.136147 CAACATTCCTGCGCTGCTC 59.864 57.895 9.73 0.00 0.00 4.26
449 467 2.178890 CATTCCTGCGCTGCTCCTC 61.179 63.158 9.73 0.00 0.00 3.71
454 472 3.070576 TGCGCTGCTCCTCTGCTA 61.071 61.111 9.73 0.00 37.48 3.49
455 473 2.279385 GCGCTGCTCCTCTGCTAG 60.279 66.667 0.00 0.00 37.48 3.42
458 476 1.521616 GCTGCTCCTCTGCTAGCTT 59.478 57.895 17.23 0.00 39.53 3.74
459 477 0.810823 GCTGCTCCTCTGCTAGCTTG 60.811 60.000 17.23 9.05 39.53 4.01
463 481 0.463620 CTCCTCTGCTAGCTTGTCCC 59.536 60.000 17.23 0.00 0.00 4.46
465 483 1.142748 CTCTGCTAGCTTGTCCCCG 59.857 63.158 17.23 0.00 0.00 5.73
466 484 1.304962 TCTGCTAGCTTGTCCCCGA 60.305 57.895 17.23 0.00 0.00 5.14
492 531 4.716003 GGTCAACCCACTAGTGCC 57.284 61.111 17.86 8.21 0.00 5.01
493 532 2.067197 GGTCAACCCACTAGTGCCT 58.933 57.895 17.86 0.86 0.00 4.75
495 534 0.977395 GTCAACCCACTAGTGCCTCT 59.023 55.000 17.86 0.00 0.00 3.69
496 535 1.066787 GTCAACCCACTAGTGCCTCTC 60.067 57.143 17.86 2.37 0.00 3.20
497 536 0.250513 CAACCCACTAGTGCCTCTCC 59.749 60.000 17.86 0.00 0.00 3.71
499 538 2.427245 CCCACTAGTGCCTCTCCCG 61.427 68.421 17.86 1.00 0.00 5.14
501 540 1.388065 CCACTAGTGCCTCTCCCGAG 61.388 65.000 17.86 0.00 37.01 4.63
503 542 1.454847 CTAGTGCCTCTCCCGAGCT 60.455 63.158 0.00 0.00 35.90 4.09
504 543 1.733402 CTAGTGCCTCTCCCGAGCTG 61.733 65.000 0.00 0.00 35.90 4.24
537 581 4.803426 CGACCTGCGACTGCTCCC 62.803 72.222 0.00 0.00 44.57 4.30
635 679 3.151710 CCCTGACGTCCGCCCATA 61.152 66.667 14.12 0.00 0.00 2.74
649 719 4.227134 CATAGCCGCTGAGCCCGT 62.227 66.667 2.16 0.00 0.00 5.28
674 744 0.997363 TCTTCCGAGAGAGGTACCCA 59.003 55.000 8.74 0.00 0.00 4.51
675 745 1.569548 TCTTCCGAGAGAGGTACCCAT 59.430 52.381 8.74 0.00 0.00 4.00
678 748 0.828343 CCGAGAGAGGTACCCATCCC 60.828 65.000 8.74 0.00 0.00 3.85
680 750 0.563672 GAGAGAGGTACCCATCCCCT 59.436 60.000 8.74 0.99 0.00 4.79
681 751 0.266152 AGAGAGGTACCCATCCCCTG 59.734 60.000 8.74 0.00 0.00 4.45
682 752 0.264955 GAGAGGTACCCATCCCCTGA 59.735 60.000 8.74 0.00 0.00 3.86
683 753 0.952659 AGAGGTACCCATCCCCTGAT 59.047 55.000 8.74 0.00 0.00 2.90
686 763 1.134438 GGTACCCATCCCCTGATCCC 61.134 65.000 0.00 0.00 0.00 3.85
701 778 3.414193 CCCCCATGGCTGCTCTGA 61.414 66.667 6.09 0.00 0.00 3.27
706 783 1.309950 CCATGGCTGCTCTGAATCTG 58.690 55.000 0.00 0.00 0.00 2.90
707 784 1.134189 CCATGGCTGCTCTGAATCTGA 60.134 52.381 0.00 0.00 0.00 3.27
708 785 1.941294 CATGGCTGCTCTGAATCTGAC 59.059 52.381 0.00 0.00 0.00 3.51
709 786 0.108472 TGGCTGCTCTGAATCTGACG 60.108 55.000 0.00 0.00 0.00 4.35
710 787 0.174389 GGCTGCTCTGAATCTGACGA 59.826 55.000 0.00 0.00 0.00 4.20
711 788 1.404717 GGCTGCTCTGAATCTGACGAA 60.405 52.381 0.00 0.00 0.00 3.85
713 790 2.539274 GCTGCTCTGAATCTGACGAATC 59.461 50.000 0.00 0.00 0.00 2.52
714 791 3.737663 GCTGCTCTGAATCTGACGAATCT 60.738 47.826 0.00 0.00 0.00 2.40
716 793 5.582689 TGCTCTGAATCTGACGAATCTAA 57.417 39.130 0.00 0.00 0.00 2.10
717 794 5.965922 TGCTCTGAATCTGACGAATCTAAA 58.034 37.500 0.00 0.00 0.00 1.85
718 795 6.577103 TGCTCTGAATCTGACGAATCTAAAT 58.423 36.000 0.00 0.00 0.00 1.40
719 796 6.699204 TGCTCTGAATCTGACGAATCTAAATC 59.301 38.462 0.00 0.00 0.00 2.17
720 797 6.129221 GCTCTGAATCTGACGAATCTAAATCG 60.129 42.308 0.00 0.00 45.47 3.34
721 798 7.027778 TCTGAATCTGACGAATCTAAATCGA 57.972 36.000 2.65 0.00 42.76 3.59
722 799 7.480810 TCTGAATCTGACGAATCTAAATCGAA 58.519 34.615 2.65 0.00 42.76 3.71
726 808 7.687005 ATCTGACGAATCTAAATCGAAGAAC 57.313 36.000 2.65 0.00 43.58 3.01
769 851 3.874383 TTCTGAATTTGTCCAGACCCA 57.126 42.857 0.00 0.00 38.95 4.51
800 882 2.119611 TCCCTGACGCTCCTTGGA 59.880 61.111 0.00 0.00 0.00 3.53
847 943 4.867086 TGCCCCTTTCTCCCTTAATAAAG 58.133 43.478 0.00 0.00 0.00 1.85
880 976 2.080693 GTGGCACGTCATTGTTCCATA 58.919 47.619 0.00 0.00 37.49 2.74
883 979 3.055747 TGGCACGTCATTGTTCCATAGTA 60.056 43.478 0.00 0.00 29.91 1.82
884 980 3.936453 GGCACGTCATTGTTCCATAGTAA 59.064 43.478 0.00 0.00 0.00 2.24
885 981 4.393680 GGCACGTCATTGTTCCATAGTAAA 59.606 41.667 0.00 0.00 0.00 2.01
912 1008 2.360475 GTCAGGGTCAGGGCAAGC 60.360 66.667 0.00 0.00 0.00 4.01
921 1021 2.042831 CAGGGCAAGCGAAGGGAAG 61.043 63.158 0.00 0.00 0.00 3.46
923 1023 2.751837 GGCAAGCGAAGGGAAGGG 60.752 66.667 0.00 0.00 0.00 3.95
925 1025 1.303317 GCAAGCGAAGGGAAGGGAA 60.303 57.895 0.00 0.00 0.00 3.97
926 1026 0.893727 GCAAGCGAAGGGAAGGGAAA 60.894 55.000 0.00 0.00 0.00 3.13
927 1027 1.168714 CAAGCGAAGGGAAGGGAAAG 58.831 55.000 0.00 0.00 0.00 2.62
928 1028 0.771755 AAGCGAAGGGAAGGGAAAGT 59.228 50.000 0.00 0.00 0.00 2.66
929 1029 1.652947 AGCGAAGGGAAGGGAAAGTA 58.347 50.000 0.00 0.00 0.00 2.24
930 1030 1.555533 AGCGAAGGGAAGGGAAAGTAG 59.444 52.381 0.00 0.00 0.00 2.57
931 1031 2.012554 GCGAAGGGAAGGGAAAGTAGC 61.013 57.143 0.00 0.00 0.00 3.58
932 1032 1.407025 CGAAGGGAAGGGAAAGTAGCC 60.407 57.143 0.00 0.00 0.00 3.93
933 1033 1.633945 GAAGGGAAGGGAAAGTAGCCA 59.366 52.381 0.00 0.00 0.00 4.75
934 1034 1.987080 AGGGAAGGGAAAGTAGCCAT 58.013 50.000 0.00 0.00 0.00 4.40
938 1038 3.046374 GGAAGGGAAAGTAGCCATCCTA 58.954 50.000 0.00 0.00 32.91 2.94
962 1062 2.068821 GGAGAGGCTGGCAGGATGA 61.069 63.158 17.64 0.00 39.69 2.92
1011 1111 2.228925 TCTCTGCTCATGAGATCGAGG 58.771 52.381 27.04 10.12 35.86 4.63
1012 1112 0.672889 TCTGCTCATGAGATCGAGGC 59.327 55.000 27.04 10.35 0.00 4.70
1020 1120 2.522923 AGATCGAGGCCCGCATCT 60.523 61.111 0.00 10.24 38.37 2.90
1070 1170 1.233285 GGCAGGCATCACCGATCATC 61.233 60.000 0.00 0.00 46.52 2.92
1085 1185 3.003068 CGATCATCTTTTCATGCTCACCC 59.997 47.826 0.00 0.00 0.00 4.61
1092 1197 1.782201 TTCATGCTCACCCACCTGCT 61.782 55.000 0.00 0.00 0.00 4.24
1192 1297 7.441017 TGAGAAGAAGAAGAAGAAGAAGAAGG 58.559 38.462 0.00 0.00 0.00 3.46
1223 1328 3.380954 CGAGATCGATCATGGATGGAGAT 59.619 47.826 26.47 1.56 43.02 2.75
1305 1413 3.677284 CTCATCGCCTGGCTGCAGT 62.677 63.158 17.92 0.00 0.00 4.40
1334 1443 3.567585 TCAGTGAGTCATCATCGATCTCC 59.432 47.826 0.00 0.00 37.87 3.71
1415 1528 1.748403 TCTGTGTTTCGCAGAGGCT 59.252 52.632 8.62 0.00 44.56 4.58
1437 1550 1.279496 TGTTCAGAGGCATAGCTGGT 58.721 50.000 0.00 0.00 33.05 4.00
1491 1604 1.077858 CTGCTCCTCTTGGCCTTCC 60.078 63.158 3.32 0.00 0.00 3.46
1655 1768 0.740868 CAGCCGTGTACATCCAGGTG 60.741 60.000 0.00 0.63 0.00 4.00
1663 1791 4.381612 CGTGTACATCCAGGTGACTAACAT 60.382 45.833 0.00 0.00 40.21 2.71
1677 1808 4.692155 TGACTAACATGATGCAGTCAACTG 59.308 41.667 21.27 5.77 46.40 3.16
1693 1824 2.710096 ACTGCAGTTGTTGTACTGGT 57.290 45.000 15.25 0.00 44.50 4.00
1694 1825 2.288666 ACTGCAGTTGTTGTACTGGTG 58.711 47.619 15.25 0.00 44.50 4.17
1695 1826 2.288666 CTGCAGTTGTTGTACTGGTGT 58.711 47.619 5.25 0.00 44.50 4.16
1696 1827 2.013400 TGCAGTTGTTGTACTGGTGTG 58.987 47.619 5.97 0.00 44.50 3.82
1697 1828 2.014128 GCAGTTGTTGTACTGGTGTGT 58.986 47.619 5.97 0.00 44.50 3.72
1698 1829 2.223249 GCAGTTGTTGTACTGGTGTGTG 60.223 50.000 5.97 0.00 44.50 3.82
1711 1842 0.855349 GTGTGTGTCGCAGTTCTCTG 59.145 55.000 0.00 0.00 43.87 3.35
1858 1989 1.208052 GGCAAGCTCAGACTGGTCATA 59.792 52.381 1.81 0.00 0.00 2.15
1900 2038 1.115930 ACTCCTGTCGCTTGAGTGGT 61.116 55.000 0.00 0.00 37.92 4.16
1957 2095 2.477176 CGTCGAGAGGGAGAGGCTG 61.477 68.421 0.00 0.00 0.00 4.85
2038 2176 2.105128 GTGAGGGTCATCGCCGAG 59.895 66.667 0.00 0.00 0.00 4.63
2098 2236 2.832129 GGTGATCAAGGAGACTGTGGTA 59.168 50.000 0.00 0.00 42.68 3.25
2234 2374 5.638657 GTCATATGAATCTCTGATCTGTGGC 59.361 44.000 7.07 0.00 0.00 5.01
2235 2375 5.543020 TCATATGAATCTCTGATCTGTGGCT 59.457 40.000 1.98 0.00 0.00 4.75
2239 2379 4.713814 TGAATCTCTGATCTGTGGCTAGTT 59.286 41.667 0.00 0.00 0.00 2.24
2249 2389 6.988580 TGATCTGTGGCTAGTTCAGATAAATG 59.011 38.462 18.79 0.00 45.21 2.32
2366 2506 0.473755 TGGCAAAGGCTGAACTGAGA 59.526 50.000 0.00 0.00 40.87 3.27
2465 2605 7.703530 GCAATTTTTGTTTGCATATTTACCG 57.296 32.000 3.68 0.00 46.78 4.02
2468 2608 5.830900 TTTTGTTTGCATATTTACCGTGC 57.169 34.783 0.00 0.00 39.26 5.34
2491 2631 1.067142 CACAATGCATGCTGGCTTTCT 60.067 47.619 20.33 0.00 34.04 2.52
2498 2638 0.607489 ATGCTGGCTTTCTTGCGAGT 60.607 50.000 0.00 0.00 40.22 4.18
2532 2672 3.963383 ATTCGGATATTTTGCACGGTC 57.037 42.857 0.00 0.00 0.00 4.79
2538 2678 3.485216 GGATATTTTGCACGGTCGTTGAG 60.485 47.826 0.00 0.00 0.00 3.02
2596 2736 3.710209 AACAGAATGCTTAGACAGGCT 57.290 42.857 0.00 0.00 42.53 4.58
2605 2745 2.012673 CTTAGACAGGCTGTTGCATCC 58.987 52.381 22.98 7.66 41.91 3.51
2614 2754 1.684248 GCTGTTGCATCCATCCCTTCT 60.684 52.381 0.00 0.00 39.41 2.85
2632 2772 3.876274 TCTGTCAAGTCACCATCTAGC 57.124 47.619 0.00 0.00 0.00 3.42
2668 2808 3.246936 CACATGATCTTCAGGTACGCATG 59.753 47.826 0.00 0.00 39.61 4.06
2683 2823 3.514645 ACGCATGATCAAAAAGCATTCC 58.485 40.909 0.00 0.00 0.00 3.01
2782 2922 0.887933 AAATGGTGCCGTTAAGCCTG 59.112 50.000 0.00 0.00 0.00 4.85
2811 2951 2.548067 GGACAGGAACGGCGATATTCAT 60.548 50.000 16.62 1.12 0.00 2.57
2860 3000 8.293699 AGGTTGATCAATATTTTTAGTGGGAC 57.706 34.615 12.12 0.00 0.00 4.46
2945 3085 4.763279 TCAAATGATGCTGAAGCTGAGAAA 59.237 37.500 3.61 0.00 42.66 2.52
2970 3110 1.840635 AGCAGGTAGGATTCAGGTTCC 59.159 52.381 0.00 0.00 0.00 3.62
3039 3181 3.408150 CTTTGCGACGTTTCTAATGCTC 58.592 45.455 0.00 0.00 0.00 4.26
3093 3236 6.295745 GCATATCTGAAGATCTGGGATTCTCA 60.296 42.308 0.00 0.00 36.05 3.27
3114 3257 2.663188 GGAAGGCCTATCGCTGCG 60.663 66.667 17.25 17.25 37.74 5.18
3132 3275 1.022735 CGTACCTCATCTACCGCTGT 58.977 55.000 0.00 0.00 0.00 4.40
3133 3276 1.404391 CGTACCTCATCTACCGCTGTT 59.596 52.381 0.00 0.00 0.00 3.16
3217 3360 5.688807 AGATAAGTGCTGCAATTGAGGTAT 58.311 37.500 23.80 9.87 0.00 2.73
3226 3369 5.622914 GCTGCAATTGAGGTATGTGACATTT 60.623 40.000 10.34 0.00 0.00 2.32
3317 3460 3.044305 AAGGCGCGAGACAGCAAC 61.044 61.111 12.10 0.00 46.78 4.17
3459 3602 4.218417 ACTCACCAAAGGTAATCATGTTGC 59.782 41.667 0.00 0.00 32.11 4.17
3479 3622 3.244318 TGCAGAACTTCTCAGCTTCATCA 60.244 43.478 3.51 0.00 37.45 3.07
3486 3629 5.743117 ACTTCTCAGCTTCATCATTAGCTT 58.257 37.500 0.00 0.00 45.03 3.74
3519 3662 9.166173 TCAATGAACTTGGAATTATGTACTCAG 57.834 33.333 0.00 0.00 35.43 3.35
3525 3668 7.434492 ACTTGGAATTATGTACTCAGTATCGG 58.566 38.462 0.00 0.00 0.00 4.18
3748 3891 3.685550 GCTTGGGCTGTGTATTCAGGTAT 60.686 47.826 0.00 0.00 36.12 2.73
3800 3943 6.034591 GCATTTGATGGAAGATCAAAGACTG 58.965 40.000 13.58 9.27 46.91 3.51
3843 3986 2.166459 CTCTAGGCACCGAGAACATTCA 59.834 50.000 1.04 0.00 0.00 2.57
3887 4030 1.457346 CTCAAGGAACAGACATGGCC 58.543 55.000 0.00 0.00 0.00 5.36
4031 4182 3.123621 ACACGTCTCATTTCGCATTCTTC 59.876 43.478 0.00 0.00 0.00 2.87
4159 4314 9.703892 ATATGTACTGCTACTCTTCATTCATTC 57.296 33.333 0.00 0.00 0.00 2.67
4164 4319 7.559486 ACTGCTACTCTTCATTCATTCATGTA 58.441 34.615 0.00 0.00 0.00 2.29
4165 4320 8.209584 ACTGCTACTCTTCATTCATTCATGTAT 58.790 33.333 0.00 0.00 0.00 2.29
4166 4321 8.374327 TGCTACTCTTCATTCATTCATGTATG 57.626 34.615 5.99 5.99 37.05 2.39
4167 4322 7.443272 TGCTACTCTTCATTCATTCATGTATGG 59.557 37.037 11.86 0.00 36.56 2.74
4168 4323 7.094890 GCTACTCTTCATTCATTCATGTATGGG 60.095 40.741 11.86 3.57 36.56 4.00
4253 4412 4.731612 CGGCGTGAGTGCTGCTCT 62.732 66.667 3.55 3.55 44.41 4.09
4283 4442 1.383523 GGGAGTATGTCAAAGCAGGC 58.616 55.000 0.00 0.00 0.00 4.85
4284 4443 1.065126 GGGAGTATGTCAAAGCAGGCT 60.065 52.381 0.00 0.00 0.00 4.58
4548 4711 4.684724 TGGACCTTAGTGATCCTTACTGT 58.315 43.478 0.00 0.00 33.34 3.55
4556 4719 9.720769 CCTTAGTGATCCTTACTGTTTTCTTAA 57.279 33.333 0.00 0.00 0.00 1.85
4709 4873 1.612726 GCATCCCATCAGATGTAGGCC 60.613 57.143 9.64 0.00 44.58 5.19
4715 4879 1.071385 CATCAGATGTAGGCCACTCCC 59.929 57.143 5.01 0.00 34.51 4.30
4731 4908 2.069273 CTCCCAACACACACGATCTTC 58.931 52.381 0.00 0.00 0.00 2.87
4732 4909 0.790207 CCCAACACACACGATCTTCG 59.210 55.000 0.00 0.00 46.93 3.79
4735 4912 0.859232 AACACACACGATCTTCGCAC 59.141 50.000 0.00 0.00 45.12 5.34
4765 4943 4.439289 GCAGGTTGCATCTCTTACCATTTC 60.439 45.833 5.81 0.00 44.26 2.17
4801 4979 1.107945 TGATCCGTTGATACCGCAGA 58.892 50.000 0.00 0.00 0.00 4.26
4884 5062 3.008485 ACATCAACTCTTTCCTCCTGGAC 59.992 47.826 0.00 0.00 43.06 4.02
4911 5089 1.032014 TCAGGTTCCAAGCAAAGCAC 58.968 50.000 0.00 0.00 0.00 4.40
4914 5092 0.032540 GGTTCCAAGCAAAGCACCAG 59.967 55.000 0.00 0.00 0.00 4.00
4986 5165 2.699954 TCTGCTTTCCTCATTCGTTCC 58.300 47.619 0.00 0.00 0.00 3.62
5001 5180 1.598894 GTTCCGAAAAATCGCCGTTC 58.401 50.000 0.00 0.00 0.00 3.95
5105 5284 0.388659 CCGCTGATCCAGGAGAAGAG 59.611 60.000 5.50 2.34 31.21 2.85
5167 5346 8.066000 TGTACATACATAGCGCGTGATATATAC 58.934 37.037 20.18 15.85 0.00 1.47
5199 5378 3.373748 CCACAGTTTTGGCTTGGTTTTTC 59.626 43.478 0.00 0.00 0.00 2.29
5215 5395 7.286215 TGGTTTTTCGGGTACATAAAAATCA 57.714 32.000 15.55 15.55 40.05 2.57
5233 5413 6.806668 AAATCAGTTTCCTTTCCCTTTTCA 57.193 33.333 0.00 0.00 0.00 2.69
5381 5565 5.279156 CCAGGAAAACAAGGGAAGAGATTTG 60.279 44.000 0.00 0.00 0.00 2.32
5406 5590 4.082125 GTTTTGATGATGGTTGAGGAGGT 58.918 43.478 0.00 0.00 0.00 3.85
5476 6314 5.772393 ATACAGTGGTCAGGGTATTGAAA 57.228 39.130 0.00 0.00 0.00 2.69
5502 6340 1.134694 GCTTTTCCATCACGACCGC 59.865 57.895 0.00 0.00 0.00 5.68
5603 6448 5.476752 TCGATGTCTCATCGCATAGATAG 57.523 43.478 22.02 0.00 40.95 2.08
5614 6459 3.895041 TCGCATAGATAGGTGGTCATGAA 59.105 43.478 0.00 0.00 0.00 2.57
5630 6475 3.117322 TCATGAACCCCCACAAAGAAAGA 60.117 43.478 0.00 0.00 0.00 2.52
5631 6476 3.611025 TGAACCCCCACAAAGAAAGAT 57.389 42.857 0.00 0.00 0.00 2.40
5632 6477 4.733077 TGAACCCCCACAAAGAAAGATA 57.267 40.909 0.00 0.00 0.00 1.98
5683 6530 1.209128 GGAACAGACGTGTGACACAG 58.791 55.000 20.80 10.83 36.84 3.66
5709 6556 2.936553 GCCATTGAAAAACATCAGGGCC 60.937 50.000 0.00 0.00 41.77 5.80
5754 6601 7.362056 CGTGTGGAACTTATCATTTTGGAAGAT 60.362 37.037 0.00 0.00 38.04 2.40
5773 6621 6.127703 GGAAGATAAAAAGGTTAAGCAGGACC 60.128 42.308 7.52 0.00 36.15 4.46
5786 6634 2.240667 AGCAGGACCAGTAATCAATGCT 59.759 45.455 0.00 0.00 36.42 3.79
5898 7132 3.068732 CGCAGATAGAATGTCCCTCTTGA 59.931 47.826 0.00 0.00 0.00 3.02
5948 7182 4.202398 ACTGAGCTTCATCAAGTTTCTCCA 60.202 41.667 0.00 0.00 31.45 3.86
5951 7195 5.593909 TGAGCTTCATCAAGTTTCTCCAAAA 59.406 36.000 0.00 0.00 31.45 2.44
6009 7262 4.650754 ATGATGCAAATGCCTCTTCTTC 57.349 40.909 11.15 0.00 41.18 2.87
6083 7336 2.134789 AAGTGAGGCCCTAAATGCTG 57.865 50.000 0.00 0.00 0.00 4.41
6084 7337 1.289160 AGTGAGGCCCTAAATGCTGA 58.711 50.000 0.00 0.00 0.00 4.26
6085 7338 1.849039 AGTGAGGCCCTAAATGCTGAT 59.151 47.619 0.00 0.00 0.00 2.90
6086 7339 2.243221 AGTGAGGCCCTAAATGCTGATT 59.757 45.455 0.00 0.00 0.00 2.57
6087 7340 3.026694 GTGAGGCCCTAAATGCTGATTT 58.973 45.455 0.00 0.00 35.83 2.17
6088 7341 3.448660 GTGAGGCCCTAAATGCTGATTTT 59.551 43.478 0.00 0.00 33.63 1.82
6089 7342 4.081476 GTGAGGCCCTAAATGCTGATTTTT 60.081 41.667 0.00 0.00 33.63 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.077108 CTGTAAAGGTCCTGTAAAACCCC 58.923 47.826 0.00 0.00 36.11 4.95
1 2 4.077108 CCTGTAAAGGTCCTGTAAAACCC 58.923 47.826 0.00 0.00 36.11 4.11
2 3 3.504906 GCCTGTAAAGGTCCTGTAAAACC 59.495 47.826 0.00 0.00 35.69 3.27
3 4 4.395625 AGCCTGTAAAGGTCCTGTAAAAC 58.604 43.478 0.00 0.00 0.00 2.43
4 5 4.717279 AGCCTGTAAAGGTCCTGTAAAA 57.283 40.909 0.00 0.00 0.00 1.52
5 6 5.741011 CATAGCCTGTAAAGGTCCTGTAAA 58.259 41.667 0.00 0.00 0.00 2.01
6 7 4.383770 GCATAGCCTGTAAAGGTCCTGTAA 60.384 45.833 0.00 0.00 0.00 2.41
7 8 3.134081 GCATAGCCTGTAAAGGTCCTGTA 59.866 47.826 0.00 0.00 0.00 2.74
8 9 2.092914 GCATAGCCTGTAAAGGTCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
9 10 2.171448 AGCATAGCCTGTAAAGGTCCTG 59.829 50.000 0.00 0.00 0.00 3.86
10 11 2.171448 CAGCATAGCCTGTAAAGGTCCT 59.829 50.000 0.00 0.00 0.00 3.85
11 12 2.170607 TCAGCATAGCCTGTAAAGGTCC 59.829 50.000 0.00 0.00 34.47 4.46
12 13 3.462021 CTCAGCATAGCCTGTAAAGGTC 58.538 50.000 0.00 0.00 34.47 3.85
13 14 2.171448 CCTCAGCATAGCCTGTAAAGGT 59.829 50.000 0.00 0.00 34.47 3.50
14 15 2.171448 ACCTCAGCATAGCCTGTAAAGG 59.829 50.000 0.00 0.00 33.09 3.11
15 16 3.201290 CACCTCAGCATAGCCTGTAAAG 58.799 50.000 0.00 0.00 34.47 1.85
16 17 2.092968 CCACCTCAGCATAGCCTGTAAA 60.093 50.000 0.00 0.00 34.47 2.01
17 18 1.486310 CCACCTCAGCATAGCCTGTAA 59.514 52.381 0.00 0.00 34.47 2.41
18 19 1.123077 CCACCTCAGCATAGCCTGTA 58.877 55.000 0.00 0.00 34.47 2.74
19 20 1.630126 CCCACCTCAGCATAGCCTGT 61.630 60.000 0.00 0.00 34.47 4.00
20 21 1.147824 CCCACCTCAGCATAGCCTG 59.852 63.158 0.00 0.00 0.00 4.85
21 22 2.074948 CCCCACCTCAGCATAGCCT 61.075 63.158 0.00 0.00 0.00 4.58
22 23 2.378634 ACCCCACCTCAGCATAGCC 61.379 63.158 0.00 0.00 0.00 3.93
23 24 1.153086 CACCCCACCTCAGCATAGC 60.153 63.158 0.00 0.00 0.00 2.97
24 25 0.107508 CACACCCCACCTCAGCATAG 60.108 60.000 0.00 0.00 0.00 2.23
25 26 0.840288 ACACACCCCACCTCAGCATA 60.840 55.000 0.00 0.00 0.00 3.14
26 27 1.719063 AACACACCCCACCTCAGCAT 61.719 55.000 0.00 0.00 0.00 3.79
27 28 2.382770 AACACACCCCACCTCAGCA 61.383 57.895 0.00 0.00 0.00 4.41
28 29 1.898574 CAACACACCCCACCTCAGC 60.899 63.158 0.00 0.00 0.00 4.26
29 30 0.401738 ATCAACACACCCCACCTCAG 59.598 55.000 0.00 0.00 0.00 3.35
30 31 0.850100 AATCAACACACCCCACCTCA 59.150 50.000 0.00 0.00 0.00 3.86
31 32 1.247567 CAATCAACACACCCCACCTC 58.752 55.000 0.00 0.00 0.00 3.85
32 33 0.178964 CCAATCAACACACCCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
33 34 0.469144 ACCAATCAACACACCCCACC 60.469 55.000 0.00 0.00 0.00 4.61
34 35 1.068434 CAACCAATCAACACACCCCAC 59.932 52.381 0.00 0.00 0.00 4.61
35 36 1.342474 ACAACCAATCAACACACCCCA 60.342 47.619 0.00 0.00 0.00 4.96
36 37 1.408969 ACAACCAATCAACACACCCC 58.591 50.000 0.00 0.00 0.00 4.95
37 38 4.339814 TCTTAACAACCAATCAACACACCC 59.660 41.667 0.00 0.00 0.00 4.61
38 39 5.508200 TCTTAACAACCAATCAACACACC 57.492 39.130 0.00 0.00 0.00 4.16
39 40 6.734137 TCATCTTAACAACCAATCAACACAC 58.266 36.000 0.00 0.00 0.00 3.82
40 41 6.951062 TCATCTTAACAACCAATCAACACA 57.049 33.333 0.00 0.00 0.00 3.72
41 42 6.363357 GCTTCATCTTAACAACCAATCAACAC 59.637 38.462 0.00 0.00 0.00 3.32
42 43 6.446318 GCTTCATCTTAACAACCAATCAACA 58.554 36.000 0.00 0.00 0.00 3.33
43 44 5.569059 CGCTTCATCTTAACAACCAATCAAC 59.431 40.000 0.00 0.00 0.00 3.18
44 45 5.335583 CCGCTTCATCTTAACAACCAATCAA 60.336 40.000 0.00 0.00 0.00 2.57
45 46 4.155826 CCGCTTCATCTTAACAACCAATCA 59.844 41.667 0.00 0.00 0.00 2.57
46 47 4.438744 CCCGCTTCATCTTAACAACCAATC 60.439 45.833 0.00 0.00 0.00 2.67
47 48 3.443681 CCCGCTTCATCTTAACAACCAAT 59.556 43.478 0.00 0.00 0.00 3.16
48 49 2.817258 CCCGCTTCATCTTAACAACCAA 59.183 45.455 0.00 0.00 0.00 3.67
49 50 2.432444 CCCGCTTCATCTTAACAACCA 58.568 47.619 0.00 0.00 0.00 3.67
50 51 1.132453 GCCCGCTTCATCTTAACAACC 59.868 52.381 0.00 0.00 0.00 3.77
51 52 1.132453 GGCCCGCTTCATCTTAACAAC 59.868 52.381 0.00 0.00 0.00 3.32
52 53 1.459450 GGCCCGCTTCATCTTAACAA 58.541 50.000 0.00 0.00 0.00 2.83
53 54 0.393808 GGGCCCGCTTCATCTTAACA 60.394 55.000 5.69 0.00 0.00 2.41
54 55 1.101635 GGGGCCCGCTTCATCTTAAC 61.102 60.000 17.79 0.00 0.00 2.01
55 56 1.226262 GGGGCCCGCTTCATCTTAA 59.774 57.895 17.79 0.00 0.00 1.85
56 57 1.998438 TGGGGCCCGCTTCATCTTA 60.998 57.895 19.83 0.00 0.00 2.10
57 58 3.338250 TGGGGCCCGCTTCATCTT 61.338 61.111 19.83 0.00 0.00 2.40
58 59 4.115199 GTGGGGCCCGCTTCATCT 62.115 66.667 28.90 0.00 0.00 2.90
68 69 0.972471 CTGATTTTCAGGGTGGGGCC 60.972 60.000 0.00 0.00 40.71 5.80
69 70 0.039618 TCTGATTTTCAGGGTGGGGC 59.960 55.000 4.78 0.00 44.39 5.80
70 71 1.341383 CCTCTGATTTTCAGGGTGGGG 60.341 57.143 3.85 0.00 43.41 4.96
71 72 1.341383 CCCTCTGATTTTCAGGGTGGG 60.341 57.143 12.89 12.89 43.41 4.61
72 73 1.341383 CCCCTCTGATTTTCAGGGTGG 60.341 57.143 3.85 0.00 43.41 4.61
73 74 1.341383 CCCCCTCTGATTTTCAGGGTG 60.341 57.143 3.85 0.00 43.41 4.61
74 75 1.002857 CCCCCTCTGATTTTCAGGGT 58.997 55.000 3.85 0.00 43.41 4.34
75 76 3.911719 CCCCCTCTGATTTTCAGGG 57.088 57.895 4.78 1.10 44.51 4.45
95 96 0.868186 TAATCTCTCTCCCCTCCCCC 59.132 60.000 0.00 0.00 0.00 5.40
96 97 1.505977 ACTAATCTCTCTCCCCTCCCC 59.494 57.143 0.00 0.00 0.00 4.81
97 98 2.178106 TCACTAATCTCTCTCCCCTCCC 59.822 54.545 0.00 0.00 0.00 4.30
98 99 3.496331 CTCACTAATCTCTCTCCCCTCC 58.504 54.545 0.00 0.00 0.00 4.30
99 100 3.496331 CCTCACTAATCTCTCTCCCCTC 58.504 54.545 0.00 0.00 0.00 4.30
100 101 2.178984 CCCTCACTAATCTCTCTCCCCT 59.821 54.545 0.00 0.00 0.00 4.79
101 102 2.604139 CCCTCACTAATCTCTCTCCCC 58.396 57.143 0.00 0.00 0.00 4.81
102 103 2.178106 TCCCCTCACTAATCTCTCTCCC 59.822 54.545 0.00 0.00 0.00 4.30
103 104 3.117284 ACTCCCCTCACTAATCTCTCTCC 60.117 52.174 0.00 0.00 0.00 3.71
104 105 4.142038 GACTCCCCTCACTAATCTCTCTC 58.858 52.174 0.00 0.00 0.00 3.20
105 106 3.117284 GGACTCCCCTCACTAATCTCTCT 60.117 52.174 0.00 0.00 0.00 3.10
106 107 3.227614 GGACTCCCCTCACTAATCTCTC 58.772 54.545 0.00 0.00 0.00 3.20
107 108 2.423660 CGGACTCCCCTCACTAATCTCT 60.424 54.545 0.00 0.00 0.00 3.10
108 109 1.957877 CGGACTCCCCTCACTAATCTC 59.042 57.143 0.00 0.00 0.00 2.75
109 110 1.288335 ACGGACTCCCCTCACTAATCT 59.712 52.381 0.00 0.00 0.00 2.40
110 111 1.777941 ACGGACTCCCCTCACTAATC 58.222 55.000 0.00 0.00 0.00 1.75
111 112 2.249309 AACGGACTCCCCTCACTAAT 57.751 50.000 0.00 0.00 0.00 1.73
112 113 2.827921 GTTAACGGACTCCCCTCACTAA 59.172 50.000 0.00 0.00 0.00 2.24
113 114 2.042162 AGTTAACGGACTCCCCTCACTA 59.958 50.000 0.00 0.00 0.00 2.74
114 115 1.203149 AGTTAACGGACTCCCCTCACT 60.203 52.381 0.00 0.00 0.00 3.41
115 116 1.204231 GAGTTAACGGACTCCCCTCAC 59.796 57.143 0.00 0.00 40.10 3.51
116 117 1.076677 AGAGTTAACGGACTCCCCTCA 59.923 52.381 10.89 0.00 45.69 3.86
117 118 1.849977 AGAGTTAACGGACTCCCCTC 58.150 55.000 10.89 0.00 45.69 4.30
118 119 1.900486 CAAGAGTTAACGGACTCCCCT 59.100 52.381 10.89 0.00 45.69 4.79
119 120 1.622312 ACAAGAGTTAACGGACTCCCC 59.378 52.381 10.89 0.00 45.69 4.81
120 121 4.525912 TTACAAGAGTTAACGGACTCCC 57.474 45.455 10.89 0.00 45.69 4.30
121 122 5.107182 GCTTTTACAAGAGTTAACGGACTCC 60.107 44.000 10.89 0.00 45.69 3.85
122 123 5.695363 AGCTTTTACAAGAGTTAACGGACTC 59.305 40.000 0.00 7.52 45.05 3.36
123 124 5.608449 AGCTTTTACAAGAGTTAACGGACT 58.392 37.500 0.00 0.00 30.57 3.85
124 125 5.919272 AGCTTTTACAAGAGTTAACGGAC 57.081 39.130 0.00 0.00 30.57 4.79
125 126 5.467735 GGAAGCTTTTACAAGAGTTAACGGA 59.532 40.000 0.00 0.00 30.57 4.69
126 127 5.334646 GGGAAGCTTTTACAAGAGTTAACGG 60.335 44.000 0.00 0.00 30.57 4.44
127 128 5.614013 CGGGAAGCTTTTACAAGAGTTAACG 60.614 44.000 0.00 0.00 30.57 3.18
128 129 5.237996 ACGGGAAGCTTTTACAAGAGTTAAC 59.762 40.000 0.00 0.00 30.57 2.01
129 130 5.370679 ACGGGAAGCTTTTACAAGAGTTAA 58.629 37.500 0.00 0.00 30.57 2.01
130 131 4.964593 ACGGGAAGCTTTTACAAGAGTTA 58.035 39.130 0.00 0.00 30.57 2.24
131 132 3.816994 ACGGGAAGCTTTTACAAGAGTT 58.183 40.909 0.00 0.00 30.57 3.01
132 133 3.487120 ACGGGAAGCTTTTACAAGAGT 57.513 42.857 0.00 0.00 30.57 3.24
133 134 3.367025 CGTACGGGAAGCTTTTACAAGAG 59.633 47.826 7.57 0.00 30.57 2.85
134 135 3.243839 ACGTACGGGAAGCTTTTACAAGA 60.244 43.478 21.06 0.00 30.57 3.02
135 136 3.062042 ACGTACGGGAAGCTTTTACAAG 58.938 45.455 21.06 0.00 0.00 3.16
136 137 3.059166 GACGTACGGGAAGCTTTTACAA 58.941 45.455 21.06 0.00 0.00 2.41
137 138 2.297033 AGACGTACGGGAAGCTTTTACA 59.703 45.455 21.06 0.00 0.00 2.41
138 139 2.951726 AGACGTACGGGAAGCTTTTAC 58.048 47.619 21.06 0.00 0.00 2.01
139 140 3.428045 GCTAGACGTACGGGAAGCTTTTA 60.428 47.826 21.06 0.00 0.00 1.52
140 141 2.673326 GCTAGACGTACGGGAAGCTTTT 60.673 50.000 21.06 0.00 0.00 2.27
141 142 1.135170 GCTAGACGTACGGGAAGCTTT 60.135 52.381 21.06 0.00 0.00 3.51
142 143 0.455005 GCTAGACGTACGGGAAGCTT 59.545 55.000 21.06 0.00 0.00 3.74
143 144 0.679002 TGCTAGACGTACGGGAAGCT 60.679 55.000 26.97 16.20 0.00 3.74
144 145 0.384669 ATGCTAGACGTACGGGAAGC 59.615 55.000 21.06 22.25 0.00 3.86
145 146 2.865343 AATGCTAGACGTACGGGAAG 57.135 50.000 21.06 13.65 0.00 3.46
146 147 3.598019 AAAATGCTAGACGTACGGGAA 57.402 42.857 21.06 2.82 0.00 3.97
147 148 3.255725 CAAAAATGCTAGACGTACGGGA 58.744 45.455 21.06 2.78 0.00 5.14
148 149 2.222953 GCAAAAATGCTAGACGTACGGG 60.223 50.000 21.06 7.74 0.00 5.28
149 150 2.534150 CGCAAAAATGCTAGACGTACGG 60.534 50.000 21.06 2.24 0.00 4.02
150 151 2.343246 TCGCAAAAATGCTAGACGTACG 59.657 45.455 15.01 15.01 0.00 3.67
151 152 3.241995 CCTCGCAAAAATGCTAGACGTAC 60.242 47.826 4.15 0.00 30.28 3.67
152 153 2.927477 CCTCGCAAAAATGCTAGACGTA 59.073 45.455 4.15 0.00 30.28 3.57
153 154 1.732259 CCTCGCAAAAATGCTAGACGT 59.268 47.619 4.15 0.00 30.28 4.34
154 155 1.529826 GCCTCGCAAAAATGCTAGACG 60.530 52.381 4.15 0.00 30.28 4.18
155 156 1.202188 GGCCTCGCAAAAATGCTAGAC 60.202 52.381 0.00 0.00 30.28 2.59
156 157 1.094785 GGCCTCGCAAAAATGCTAGA 58.905 50.000 0.00 0.00 30.28 2.43
157 158 0.810648 TGGCCTCGCAAAAATGCTAG 59.189 50.000 3.32 0.00 0.00 3.42
158 159 0.810648 CTGGCCTCGCAAAAATGCTA 59.189 50.000 3.32 0.00 0.00 3.49
159 160 1.181098 ACTGGCCTCGCAAAAATGCT 61.181 50.000 3.32 0.00 0.00 3.79
160 161 1.010419 CACTGGCCTCGCAAAAATGC 61.010 55.000 3.32 0.00 0.00 3.56
161 162 0.597568 TCACTGGCCTCGCAAAAATG 59.402 50.000 3.32 0.00 0.00 2.32
162 163 0.883833 CTCACTGGCCTCGCAAAAAT 59.116 50.000 3.32 0.00 0.00 1.82
163 164 1.795170 GCTCACTGGCCTCGCAAAAA 61.795 55.000 3.32 0.00 0.00 1.94
164 165 2.260869 GCTCACTGGCCTCGCAAAA 61.261 57.895 3.32 0.00 0.00 2.44
165 166 2.669569 GCTCACTGGCCTCGCAAA 60.670 61.111 3.32 0.00 0.00 3.68
195 196 1.798223 GGAATTTGGCAAAGTTTCGGC 59.202 47.619 18.61 3.31 0.00 5.54
198 199 4.283467 AGGGTAGGAATTTGGCAAAGTTTC 59.717 41.667 18.61 16.49 0.00 2.78
207 208 4.102054 ACCATACGTAGGGTAGGAATTTGG 59.898 45.833 29.23 14.99 38.81 3.28
212 213 4.255510 AGAACCATACGTAGGGTAGGAA 57.744 45.455 30.30 0.00 39.84 3.36
214 215 4.403432 TCAAAGAACCATACGTAGGGTAGG 59.597 45.833 30.30 17.73 39.84 3.18
217 218 3.197116 CCTCAAAGAACCATACGTAGGGT 59.803 47.826 25.47 25.47 43.07 4.34
218 219 3.793559 CCTCAAAGAACCATACGTAGGG 58.206 50.000 24.02 24.02 0.00 3.53
237 238 1.003003 GGAAGCAGAGACTTCTTGCCT 59.997 52.381 4.46 0.00 44.51 4.75
239 240 2.175878 TGGAAGCAGAGACTTCTTGC 57.824 50.000 4.46 0.00 44.51 4.01
247 248 3.490933 GCATACGTACATGGAAGCAGAGA 60.491 47.826 0.00 0.00 0.00 3.10
248 249 2.797156 GCATACGTACATGGAAGCAGAG 59.203 50.000 0.00 0.00 0.00 3.35
300 307 4.994201 GAGTGGTGCGCGTCGACA 62.994 66.667 17.16 0.00 0.00 4.35
305 312 2.661866 GACTTGAGTGGTGCGCGT 60.662 61.111 8.43 0.00 0.00 6.01
321 328 0.911045 TGCCATGGGAGAGCTTCAGA 60.911 55.000 15.13 0.00 0.00 3.27
366 384 2.376855 AGAGAAAGGGAGAAAAGGGGTG 59.623 50.000 0.00 0.00 0.00 4.61
367 385 2.719676 AGAGAAAGGGAGAAAAGGGGT 58.280 47.619 0.00 0.00 0.00 4.95
374 392 6.509523 TTTACAAGGAAGAGAAAGGGAGAA 57.490 37.500 0.00 0.00 0.00 2.87
375 393 6.704056 ATTTACAAGGAAGAGAAAGGGAGA 57.296 37.500 0.00 0.00 0.00 3.71
376 394 8.897752 CATTATTTACAAGGAAGAGAAAGGGAG 58.102 37.037 0.00 0.00 0.00 4.30
377 395 8.390921 ACATTATTTACAAGGAAGAGAAAGGGA 58.609 33.333 0.00 0.00 0.00 4.20
385 403 6.889722 CCCCAGAACATTATTTACAAGGAAGA 59.110 38.462 0.00 0.00 0.00 2.87
386 404 6.663523 ACCCCAGAACATTATTTACAAGGAAG 59.336 38.462 0.00 0.00 0.00 3.46
389 407 5.127031 CCACCCCAGAACATTATTTACAAGG 59.873 44.000 0.00 0.00 0.00 3.61
390 408 5.714806 ACCACCCCAGAACATTATTTACAAG 59.285 40.000 0.00 0.00 0.00 3.16
391 409 5.646215 ACCACCCCAGAACATTATTTACAA 58.354 37.500 0.00 0.00 0.00 2.41
392 410 5.263872 ACCACCCCAGAACATTATTTACA 57.736 39.130 0.00 0.00 0.00 2.41
393 411 5.623596 GCAACCACCCCAGAACATTATTTAC 60.624 44.000 0.00 0.00 0.00 2.01
394 412 4.464597 GCAACCACCCCAGAACATTATTTA 59.535 41.667 0.00 0.00 0.00 1.40
395 413 3.260632 GCAACCACCCCAGAACATTATTT 59.739 43.478 0.00 0.00 0.00 1.40
419 437 0.963962 CAGGAATGTTGCTGGCAAGT 59.036 50.000 8.34 0.00 42.16 3.16
420 438 0.389426 GCAGGAATGTTGCTGGCAAG 60.389 55.000 14.72 0.00 45.44 4.01
421 439 1.667151 GCAGGAATGTTGCTGGCAA 59.333 52.632 14.72 3.72 45.44 4.52
423 441 2.180017 CGCAGGAATGTTGCTGGC 59.820 61.111 14.72 7.29 45.44 4.85
424 442 2.180017 GCGCAGGAATGTTGCTGG 59.820 61.111 14.72 7.21 45.44 4.85
426 444 2.986306 GCAGCGCAGGAATGTTGCT 61.986 57.895 11.47 0.00 39.38 3.91
427 445 2.505557 GCAGCGCAGGAATGTTGC 60.506 61.111 11.47 3.79 38.18 4.17
428 446 1.136147 GAGCAGCGCAGGAATGTTG 59.864 57.895 11.47 0.00 0.00 3.33
429 447 2.042831 GGAGCAGCGCAGGAATGTT 61.043 57.895 11.47 0.00 0.00 2.71
431 449 2.124819 AGGAGCAGCGCAGGAATG 60.125 61.111 11.47 0.00 0.00 2.67
433 451 2.999648 AGAGGAGCAGCGCAGGAA 61.000 61.111 11.47 0.00 0.00 3.36
438 456 2.279385 CTAGCAGAGGAGCAGCGC 60.279 66.667 0.00 0.00 36.85 5.92
446 464 1.524482 GGGGACAAGCTAGCAGAGG 59.476 63.158 18.83 5.46 0.00 3.69
449 467 1.153549 GTCGGGGACAAGCTAGCAG 60.154 63.158 18.83 11.61 32.09 4.24
454 472 4.681978 GTGCGTCGGGGACAAGCT 62.682 66.667 0.00 0.00 36.89 3.74
455 473 4.980805 TGTGCGTCGGGGACAAGC 62.981 66.667 0.00 0.00 44.63 4.01
463 481 4.308458 TTGACCCCTGTGCGTCGG 62.308 66.667 0.00 0.00 0.00 4.79
465 483 2.668550 GGTTGACCCCTGTGCGTC 60.669 66.667 0.00 0.00 0.00 5.19
521 560 3.695606 TGGGAGCAGTCGCAGGTC 61.696 66.667 0.00 0.00 40.54 3.85
537 581 2.885676 CTGGCGGCGGATCGAAATG 61.886 63.158 13.52 0.00 0.00 2.32
631 675 4.976925 CGGGCTCAGCGGCTATGG 62.977 72.222 0.26 0.00 38.46 2.74
632 676 4.227134 ACGGGCTCAGCGGCTATG 62.227 66.667 0.26 0.00 38.46 2.23
633 677 3.917760 GACGGGCTCAGCGGCTAT 61.918 66.667 0.26 0.00 38.46 2.97
649 719 1.032657 CCTCTCTCGGAAGAAGGCGA 61.033 60.000 0.00 0.00 41.32 5.54
651 721 1.406180 GTACCTCTCTCGGAAGAAGGC 59.594 57.143 0.00 0.00 41.32 4.35
674 744 1.466788 CCATGGGGGATCAGGGGAT 60.467 63.158 2.85 0.00 40.01 3.85
675 745 2.038438 CCATGGGGGATCAGGGGA 60.038 66.667 2.85 0.00 40.01 4.81
678 748 2.519441 CAGCCATGGGGGATCAGG 59.481 66.667 15.13 0.00 40.01 3.86
680 750 2.697263 AGCAGCCATGGGGGATCA 60.697 61.111 15.13 0.00 40.01 2.92
681 751 2.114838 GAGCAGCCATGGGGGATC 59.885 66.667 15.13 0.00 40.01 3.36
682 752 2.369291 AGAGCAGCCATGGGGGAT 60.369 61.111 15.13 0.00 40.01 3.85
683 753 3.414193 CAGAGCAGCCATGGGGGA 61.414 66.667 15.13 0.00 40.01 4.81
686 763 0.183014 AGATTCAGAGCAGCCATGGG 59.817 55.000 15.13 0.00 0.00 4.00
701 778 7.976734 AGTTCTTCGATTTAGATTCGTCAGATT 59.023 33.333 0.00 0.00 37.82 2.40
706 783 7.273815 AGTCAAGTTCTTCGATTTAGATTCGTC 59.726 37.037 0.00 0.00 37.82 4.20
707 784 7.091443 AGTCAAGTTCTTCGATTTAGATTCGT 58.909 34.615 0.00 0.00 37.82 3.85
708 785 7.513190 AGTCAAGTTCTTCGATTTAGATTCG 57.487 36.000 0.00 0.00 37.94 3.34
709 786 9.790389 TCTAGTCAAGTTCTTCGATTTAGATTC 57.210 33.333 0.00 0.00 0.00 2.52
716 793 7.063544 CCGAAAATCTAGTCAAGTTCTTCGATT 59.936 37.037 0.00 0.00 0.00 3.34
717 794 6.531948 CCGAAAATCTAGTCAAGTTCTTCGAT 59.468 38.462 0.00 0.00 0.00 3.59
718 795 5.862323 CCGAAAATCTAGTCAAGTTCTTCGA 59.138 40.000 0.00 0.00 0.00 3.71
719 796 5.634020 ACCGAAAATCTAGTCAAGTTCTTCG 59.366 40.000 0.00 0.00 0.00 3.79
720 797 7.201333 CGTACCGAAAATCTAGTCAAGTTCTTC 60.201 40.741 0.00 0.00 0.00 2.87
721 798 6.585322 CGTACCGAAAATCTAGTCAAGTTCTT 59.415 38.462 0.00 0.00 0.00 2.52
722 799 6.072286 TCGTACCGAAAATCTAGTCAAGTTCT 60.072 38.462 0.00 0.00 31.06 3.01
746 828 4.766891 TGGGTCTGGACAAATTCAGAATTC 59.233 41.667 8.90 0.00 41.07 2.17
800 882 3.182887 AGATCTCTGGTTCCAGACTGT 57.817 47.619 16.47 6.54 38.06 3.55
819 908 0.254462 GGGAGAAAGGGGCAGAGAAG 59.746 60.000 0.00 0.00 0.00 2.85
847 943 2.223711 ACGTGCCACCTCAAAACATTTC 60.224 45.455 0.00 0.00 0.00 2.17
880 976 4.494591 ACCCTGACTTCCTCTTCTTTACT 58.505 43.478 0.00 0.00 0.00 2.24
883 979 3.318313 TGACCCTGACTTCCTCTTCTTT 58.682 45.455 0.00 0.00 0.00 2.52
884 980 2.903135 CTGACCCTGACTTCCTCTTCTT 59.097 50.000 0.00 0.00 0.00 2.52
885 981 2.534990 CTGACCCTGACTTCCTCTTCT 58.465 52.381 0.00 0.00 0.00 2.85
912 1008 1.407025 GGCTACTTTCCCTTCCCTTCG 60.407 57.143 0.00 0.00 0.00 3.79
921 1021 2.439880 AGCTTAGGATGGCTACTTTCCC 59.560 50.000 0.00 0.00 37.00 3.97
923 1023 3.471680 CCAGCTTAGGATGGCTACTTTC 58.528 50.000 0.00 0.00 42.33 2.62
925 1025 1.771255 CCCAGCTTAGGATGGCTACTT 59.229 52.381 3.09 0.00 46.71 2.24
926 1026 1.062121 TCCCAGCTTAGGATGGCTACT 60.062 52.381 3.09 0.00 46.71 2.57
927 1027 1.346068 CTCCCAGCTTAGGATGGCTAC 59.654 57.143 3.09 0.00 46.71 3.58
928 1028 1.220493 TCTCCCAGCTTAGGATGGCTA 59.780 52.381 3.09 0.00 46.71 3.93
929 1029 0.030705 TCTCCCAGCTTAGGATGGCT 60.031 55.000 3.09 0.00 46.71 4.75
930 1030 0.396060 CTCTCCCAGCTTAGGATGGC 59.604 60.000 3.09 0.00 46.71 4.40
932 1032 0.396060 GCCTCTCCCAGCTTAGGATG 59.604 60.000 2.67 0.43 31.48 3.51
933 1033 0.267356 AGCCTCTCCCAGCTTAGGAT 59.733 55.000 2.67 0.00 35.22 3.24
934 1034 0.689080 CAGCCTCTCCCAGCTTAGGA 60.689 60.000 2.29 2.29 37.18 2.94
938 1038 3.726144 GCCAGCCTCTCCCAGCTT 61.726 66.667 0.00 0.00 37.18 3.74
970 1070 3.730761 CACCGTCTTGCAGCAGCC 61.731 66.667 0.00 0.00 41.13 4.85
1011 1111 0.321021 AGATGAGATGAGATGCGGGC 59.679 55.000 0.00 0.00 0.00 6.13
1012 1112 1.617357 TGAGATGAGATGAGATGCGGG 59.383 52.381 0.00 0.00 0.00 6.13
1020 1120 1.135721 CCAGCGTGTGAGATGAGATGA 59.864 52.381 0.00 0.00 0.00 2.92
1051 1151 1.228063 ATGATCGGTGATGCCTGCC 60.228 57.895 0.00 0.00 34.25 4.85
1070 1170 1.542915 CAGGTGGGTGAGCATGAAAAG 59.457 52.381 0.00 0.00 0.00 2.27
1085 1185 1.869574 CACGATCGACGAGCAGGTG 60.870 63.158 24.34 10.04 45.77 4.00
1092 1197 2.071540 ACAGAGTTACACGATCGACGA 58.928 47.619 24.34 0.00 45.77 4.20
1153 1258 0.179032 TTCTCAAGAAGTTGCGGGCA 60.179 50.000 0.00 0.00 33.23 5.36
1173 1278 6.530120 AGGTTCCTTCTTCTTCTTCTTCTTC 58.470 40.000 0.00 0.00 0.00 2.87
1174 1279 6.100424 TGAGGTTCCTTCTTCTTCTTCTTCTT 59.900 38.462 0.00 0.00 0.00 2.52
1175 1280 5.604650 TGAGGTTCCTTCTTCTTCTTCTTCT 59.395 40.000 0.00 0.00 0.00 2.85
1176 1281 5.859495 TGAGGTTCCTTCTTCTTCTTCTTC 58.141 41.667 0.00 0.00 0.00 2.87
1177 1282 5.896073 TGAGGTTCCTTCTTCTTCTTCTT 57.104 39.130 0.00 0.00 0.00 2.52
1178 1283 5.337169 CGATGAGGTTCCTTCTTCTTCTTCT 60.337 44.000 0.00 0.00 0.00 2.85
1179 1284 4.867608 CGATGAGGTTCCTTCTTCTTCTTC 59.132 45.833 0.00 0.00 0.00 2.87
1180 1285 4.528596 TCGATGAGGTTCCTTCTTCTTCTT 59.471 41.667 0.00 0.00 0.00 2.52
1181 1286 4.090090 TCGATGAGGTTCCTTCTTCTTCT 58.910 43.478 0.00 0.00 0.00 2.85
1217 1322 1.539165 CTCCCTCCTCCGATCTCCA 59.461 63.158 0.00 0.00 0.00 3.86
1305 1413 5.183904 TCGATGATGACTCACTGAAGAGAAA 59.816 40.000 8.43 0.00 38.98 2.52
1350 1459 4.170062 TCGATCGACGGCGGACAC 62.170 66.667 15.15 0.00 42.82 3.67
1415 1528 3.084039 CCAGCTATGCCTCTGAACAAAA 58.916 45.455 0.00 0.00 32.26 2.44
1437 1550 2.521465 CACCTGCCACCTTGCCAA 60.521 61.111 0.00 0.00 0.00 4.52
1491 1604 0.671781 CGCAGGTTCTTCTGGACCAG 60.672 60.000 15.99 15.99 35.43 4.00
1655 1768 5.213913 CAGTTGACTGCATCATGTTAGTC 57.786 43.478 14.02 14.02 37.11 2.59
1677 1808 2.014128 ACACACCAGTACAACAACTGC 58.986 47.619 0.00 0.00 44.56 4.40
1678 1809 3.006940 ACACACACCAGTACAACAACTG 58.993 45.455 0.00 0.00 45.33 3.16
1679 1810 3.267483 GACACACACCAGTACAACAACT 58.733 45.455 0.00 0.00 0.00 3.16
1680 1811 2.029970 CGACACACACCAGTACAACAAC 59.970 50.000 0.00 0.00 0.00 3.32
1681 1812 2.272678 CGACACACACCAGTACAACAA 58.727 47.619 0.00 0.00 0.00 2.83
1682 1813 1.929230 CGACACACACCAGTACAACA 58.071 50.000 0.00 0.00 0.00 3.33
1683 1814 0.580104 GCGACACACACCAGTACAAC 59.420 55.000 0.00 0.00 0.00 3.32
1684 1815 0.175989 TGCGACACACACCAGTACAA 59.824 50.000 0.00 0.00 0.00 2.41
1685 1816 0.249280 CTGCGACACACACCAGTACA 60.249 55.000 0.00 0.00 0.00 2.90
1686 1817 0.249322 ACTGCGACACACACCAGTAC 60.249 55.000 0.00 0.00 36.82 2.73
1687 1818 0.462375 AACTGCGACACACACCAGTA 59.538 50.000 0.00 0.00 37.55 2.74
1688 1819 0.810031 GAACTGCGACACACACCAGT 60.810 55.000 0.00 0.00 40.02 4.00
1689 1820 0.530650 AGAACTGCGACACACACCAG 60.531 55.000 0.00 0.00 0.00 4.00
1690 1821 0.529773 GAGAACTGCGACACACACCA 60.530 55.000 0.00 0.00 0.00 4.17
1691 1822 0.249489 AGAGAACTGCGACACACACC 60.249 55.000 0.00 0.00 0.00 4.16
1692 1823 0.855349 CAGAGAACTGCGACACACAC 59.145 55.000 0.00 0.00 37.33 3.82
1693 1824 0.744281 TCAGAGAACTGCGACACACA 59.256 50.000 0.00 0.00 43.17 3.72
1694 1825 1.132588 GTCAGAGAACTGCGACACAC 58.867 55.000 0.00 0.00 43.17 3.82
1695 1826 0.744281 TGTCAGAGAACTGCGACACA 59.256 50.000 0.00 0.00 43.17 3.72
1696 1827 1.852942 TTGTCAGAGAACTGCGACAC 58.147 50.000 0.00 0.00 43.17 3.67
1697 1828 2.035832 TCATTGTCAGAGAACTGCGACA 59.964 45.455 0.00 0.00 43.17 4.35
1698 1829 2.677199 TCATTGTCAGAGAACTGCGAC 58.323 47.619 0.00 0.00 43.17 5.19
1711 1842 6.580476 CGCCTTTTACAAAATGTTCATTGTC 58.420 36.000 0.00 0.00 40.14 3.18
1858 1989 0.419459 AGATGAAGAGGGGTCAGGGT 59.581 55.000 0.00 0.00 0.00 4.34
1866 2002 2.170187 CAGGAGTGGAAGATGAAGAGGG 59.830 54.545 0.00 0.00 0.00 4.30
1871 2007 1.066858 GCGACAGGAGTGGAAGATGAA 60.067 52.381 0.00 0.00 0.00 2.57
1900 2038 3.896888 AGCAAATTCAGATGACCAACCAA 59.103 39.130 0.00 0.00 0.00 3.67
1957 2095 0.885596 GCAGCCTGCAGATCTCATCC 60.886 60.000 17.39 0.00 44.26 3.51
2098 2236 0.915872 TGTCAGCATCCTCCACCCAT 60.916 55.000 0.00 0.00 0.00 4.00
2143 2281 1.819288 GAGATCACCTTGAGTCGGTCA 59.181 52.381 0.00 0.00 30.82 4.02
2234 2374 9.243637 GTTAGTCTCTGCATTTATCTGAACTAG 57.756 37.037 0.00 0.00 0.00 2.57
2235 2375 7.915923 CGTTAGTCTCTGCATTTATCTGAACTA 59.084 37.037 0.00 0.00 0.00 2.24
2239 2379 6.036470 CACGTTAGTCTCTGCATTTATCTGA 58.964 40.000 0.00 0.00 0.00 3.27
2249 2389 1.989165 CAAGAGCACGTTAGTCTCTGC 59.011 52.381 7.03 0.00 36.08 4.26
2284 2424 0.608856 CAACCCCTGCAGCACACATA 60.609 55.000 8.66 0.00 0.00 2.29
2285 2425 1.904865 CAACCCCTGCAGCACACAT 60.905 57.895 8.66 0.00 0.00 3.21
2366 2506 4.344968 AGCAACCTAGCCAGTTTTTCATTT 59.655 37.500 0.00 0.00 34.23 2.32
2491 2631 5.794687 ATTCATGATCGTTAAACTCGCAA 57.205 34.783 0.00 0.00 0.00 4.85
2532 2672 0.179089 CTCCTCCATCCTGCTCAACG 60.179 60.000 0.00 0.00 0.00 4.10
2538 2678 0.545646 AGCTTTCTCCTCCATCCTGC 59.454 55.000 0.00 0.00 0.00 4.85
2596 2736 1.355381 ACAGAAGGGATGGATGCAACA 59.645 47.619 0.00 0.00 0.00 3.33
2605 2745 2.038952 TGGTGACTTGACAGAAGGGATG 59.961 50.000 0.00 0.00 0.00 3.51
2614 2754 2.167662 TCGCTAGATGGTGACTTGACA 58.832 47.619 0.00 0.00 0.00 3.58
2632 2772 1.872952 TCATGTGCTCTGTGGTTTTCG 59.127 47.619 0.00 0.00 0.00 3.46
2722 2862 3.963676 TTGCCTGTCAACATGCAAC 57.036 47.368 18.04 0.00 46.99 4.17
2782 2922 1.739371 GCCGTTCCTGTCCACTATCAC 60.739 57.143 0.00 0.00 0.00 3.06
2811 2951 4.529897 ACTGTAGGACCATACATACGTCA 58.470 43.478 0.00 0.00 35.21 4.35
2860 3000 1.003545 CAGGGTCAAATTAGCATCGCG 60.004 52.381 0.00 0.00 0.00 5.87
2864 3004 2.311542 TCCCACAGGGTCAAATTAGCAT 59.688 45.455 1.36 0.00 44.74 3.79
2945 3085 1.209019 CTGAATCCTACCTGCTGCTGT 59.791 52.381 0.00 0.66 0.00 4.40
2970 3110 3.861840 TCCAAGCTTATCCAAGAGTTCG 58.138 45.455 0.00 0.00 33.20 3.95
3027 3168 7.770897 TCCTAGATTTTCAGGAGCATTAGAAAC 59.229 37.037 0.00 0.00 35.99 2.78
3039 3181 3.118482 TCAGCAGCTCCTAGATTTTCAGG 60.118 47.826 0.00 0.00 0.00 3.86
3093 3236 2.064581 AGCGATAGGCCTTCCGGTT 61.065 57.895 12.58 0.00 45.17 4.44
3114 3257 3.187700 CAAACAGCGGTAGATGAGGTAC 58.812 50.000 0.00 0.00 37.19 3.34
3132 3275 4.081406 CAAATGATCTCCAGTGGACCAAA 58.919 43.478 8.12 0.00 0.00 3.28
3133 3276 3.330405 TCAAATGATCTCCAGTGGACCAA 59.670 43.478 8.12 0.00 0.00 3.67
3217 3360 8.508062 GTTATGTGTACCATTGTAAATGTCACA 58.492 33.333 16.88 16.88 37.61 3.58
3226 3369 4.938832 GTGCCAGTTATGTGTACCATTGTA 59.061 41.667 2.73 0.00 34.86 2.41
3317 3460 7.592938 TGGATAGCCAATATGCTAATTTTTCG 58.407 34.615 0.00 0.00 46.23 3.46
3423 3566 0.108138 GGTGAGTTGAGGGACGATGG 60.108 60.000 0.00 0.00 0.00 3.51
3431 3574 4.651778 TGATTACCTTTGGTGAGTTGAGG 58.348 43.478 0.00 0.00 36.19 3.86
3459 3602 6.238157 GCTAATGATGAAGCTGAGAAGTTCTG 60.238 42.308 10.90 0.00 35.80 3.02
3519 3662 4.703093 TCCTGGAATTTTTCAACCCGATAC 59.297 41.667 0.00 0.00 0.00 2.24
3525 3668 5.432645 TGGTTTTCCTGGAATTTTTCAACC 58.567 37.500 22.77 22.77 41.38 3.77
3843 3986 1.306141 TTCCTCTGGGGCTGACGAT 60.306 57.895 0.00 0.00 34.39 3.73
4159 4314 4.032703 GCACTAGTTTTGCCCATACATG 57.967 45.455 0.00 0.00 33.58 3.21
4168 4323 1.885887 TGTCCATGGCACTAGTTTTGC 59.114 47.619 6.96 0.00 39.41 3.68
4253 4412 6.381498 TTGACATACTCCCCATTACTGAAA 57.619 37.500 0.00 0.00 0.00 2.69
4283 4442 1.676529 CAATGCTCCAGCTCATCCAAG 59.323 52.381 0.00 0.00 42.66 3.61
4284 4443 1.683938 CCAATGCTCCAGCTCATCCAA 60.684 52.381 0.00 0.00 42.66 3.53
4556 4719 8.215736 TGACATGAGAAGGATGATTATGATTGT 58.784 33.333 0.00 0.00 0.00 2.71
4557 4720 8.617290 TGACATGAGAAGGATGATTATGATTG 57.383 34.615 0.00 0.00 0.00 2.67
4558 4721 9.809395 AATGACATGAGAAGGATGATTATGATT 57.191 29.630 0.00 0.00 0.00 2.57
4579 4743 8.699283 ACGTAGTATCCAAGAAAGTTAATGAC 57.301 34.615 0.00 0.00 41.94 3.06
4709 4873 1.148310 GATCGTGTGTGTTGGGAGTG 58.852 55.000 0.00 0.00 0.00 3.51
4715 4879 0.858583 TGCGAAGATCGTGTGTGTTG 59.141 50.000 1.45 0.00 42.81 3.33
4732 4909 3.240684 GCAACCTGCATATTCGTGC 57.759 52.632 0.00 0.00 44.26 5.34
4765 4943 4.680708 CGGATCATTATTATCCACTCCGGG 60.681 50.000 0.00 0.00 42.69 5.73
4801 4979 2.509111 TCGCATGCTCGCAACGAT 60.509 55.556 17.13 0.00 34.99 3.73
4884 5062 2.749076 TGCTTGGAACCTGAAATCATCG 59.251 45.455 0.00 0.00 0.00 3.84
4911 5089 0.323816 GAAAAGAAGGGGGAGGCTGG 60.324 60.000 0.00 0.00 0.00 4.85
4914 5092 0.405973 ACAGAAAAGAAGGGGGAGGC 59.594 55.000 0.00 0.00 0.00 4.70
4956 5135 4.701765 TGAGGAAAGCAGATTCTAGCATC 58.298 43.478 9.67 0.00 0.00 3.91
4986 5165 2.348666 AGAGATGAACGGCGATTTTTCG 59.651 45.455 16.62 0.00 0.00 3.46
5105 5284 2.434359 CTTCGAACGGGGAGCCAC 60.434 66.667 0.00 0.00 0.00 5.01
5167 5346 4.458989 AGCCAAAACTGTGGTATGTATGTG 59.541 41.667 0.00 0.00 41.12 3.21
5199 5378 6.753107 AGGAAACTGATTTTTATGTACCCG 57.247 37.500 0.00 0.00 41.13 5.28
5233 5413 2.307392 ACAAAAACCCAAAAACCAGCCT 59.693 40.909 0.00 0.00 0.00 4.58
5304 5488 3.311596 GCTCACTTTTGTACAAGTCGGTT 59.688 43.478 8.56 0.00 34.60 4.44
5349 5533 4.044065 TCCCTTGTTTTCCTGGATGTACAT 59.956 41.667 8.43 8.43 0.00 2.29
5350 5534 3.396276 TCCCTTGTTTTCCTGGATGTACA 59.604 43.478 0.00 0.00 0.00 2.90
5381 5565 2.497273 CCTCAACCATCATCAAAACCCC 59.503 50.000 0.00 0.00 0.00 4.95
5510 6348 2.391389 GCTCAAACGGCGAGGGAAG 61.391 63.158 16.62 5.28 0.00 3.46
5512 6350 2.954684 ATGCTCAAACGGCGAGGGA 61.955 57.895 16.62 6.43 0.00 4.20
5648 6495 6.566564 CGTCTGTTCCATGTTATCATTATGGC 60.567 42.308 0.00 0.00 40.87 4.40
5653 6500 5.122239 CACACGTCTGTTCCATGTTATCATT 59.878 40.000 0.00 0.00 31.15 2.57
5673 6520 0.250901 ATGGCCCTTCTGTGTCACAC 60.251 55.000 0.00 0.00 34.56 3.82
5683 6530 4.248058 CTGATGTTTTTCAATGGCCCTTC 58.752 43.478 0.00 0.00 0.00 3.46
5725 6572 6.370442 TCCAAAATGATAAGTTCCACACGTAG 59.630 38.462 0.00 0.00 0.00 3.51
5726 6573 6.231951 TCCAAAATGATAAGTTCCACACGTA 58.768 36.000 0.00 0.00 0.00 3.57
5754 6601 5.056553 ACTGGTCCTGCTTAACCTTTTTA 57.943 39.130 0.00 0.00 0.00 1.52
5786 6634 2.242196 CTCTTTTCCATCCAAGCCCCTA 59.758 50.000 0.00 0.00 0.00 3.53
5857 6705 2.231478 GCGGCAGCAGTAATATCCTCTA 59.769 50.000 3.18 0.00 44.35 2.43
5922 7156 5.128919 AGAAACTTGATGAAGCTCAGTTGT 58.871 37.500 0.00 0.00 31.68 3.32
5954 7198 5.566230 GCCATGAACTTGATGAAGCTCTTTT 60.566 40.000 0.00 0.00 31.68 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.