Multiple sequence alignment - TraesCS3A01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G057800 chr3A 100.000 4209 0 0 1 4209 33887497 33883289 0.000000e+00 7773.0
1 TraesCS3A01G057800 chr3A 94.995 979 45 4 3233 4209 109190704 109189728 0.000000e+00 1533.0
2 TraesCS3A01G057800 chr3A 74.826 1152 254 25 1066 2193 33200229 33201368 4.890000e-134 488.0
3 TraesCS3A01G057800 chr3A 85.135 74 11 0 61 134 33887242 33887169 4.510000e-10 76.8
4 TraesCS3A01G057800 chr3A 85.135 74 11 0 256 329 33887437 33887364 4.510000e-10 76.8
5 TraesCS3A01G057800 chr3D 96.382 2239 75 3 987 3222 24873493 24871258 0.000000e+00 3681.0
6 TraesCS3A01G057800 chr3D 75.179 697 140 20 1068 1743 23889978 23889294 8.850000e-77 298.0
7 TraesCS3A01G057800 chr3D 91.765 170 7 2 761 923 24873663 24873494 3.270000e-56 230.0
8 TraesCS3A01G057800 chr3D 77.580 281 57 4 1073 1348 24103702 24103423 9.360000e-37 165.0
9 TraesCS3A01G057800 chr3B 94.484 2266 75 11 997 3222 42475698 42473443 0.000000e+00 3446.0
10 TraesCS3A01G057800 chr3B 90.849 601 30 17 367 953 42476288 42475699 0.000000e+00 782.0
11 TraesCS3A01G057800 chr3B 91.209 364 31 1 1 363 42484224 42483861 1.050000e-135 494.0
12 TraesCS3A01G057800 chr3B 74.359 702 146 21 1066 1744 41510830 41510140 6.940000e-68 268.0
13 TraesCS3A01G057800 chr3B 82.667 225 30 5 130 354 28613944 28614159 1.540000e-44 191.0
14 TraesCS3A01G057800 chr3B 82.530 166 29 0 1077 1242 480427160 480426995 3.390000e-31 147.0
15 TraesCS3A01G057800 chr3B 90.909 88 6 2 366 453 262186907 262186992 2.660000e-22 117.0
16 TraesCS3A01G057800 chr3B 89.062 64 7 0 257 320 262186547 262186610 3.490000e-11 80.5
17 TraesCS3A01G057800 chr2A 94.990 978 47 2 3233 4209 246882699 246883675 0.000000e+00 1533.0
18 TraesCS3A01G057800 chr2A 86.405 331 38 4 37 365 755276814 755277139 5.180000e-94 355.0
19 TraesCS3A01G057800 chr2A 91.549 71 4 2 2432 2500 194713137 194713207 3.460000e-16 97.1
20 TraesCS3A01G057800 chr5A 94.796 980 49 2 3232 4209 706315640 706314661 0.000000e+00 1526.0
21 TraesCS3A01G057800 chr5A 94.581 978 52 1 3233 4209 612579500 612578523 0.000000e+00 1511.0
22 TraesCS3A01G057800 chr5A 94.106 984 56 2 3227 4209 321739444 321740426 0.000000e+00 1495.0
23 TraesCS3A01G057800 chr4A 94.882 977 49 1 3234 4209 590394079 590395055 0.000000e+00 1526.0
24 TraesCS3A01G057800 chr4A 94.022 987 53 6 3227 4209 636165316 636166300 0.000000e+00 1491.0
25 TraesCS3A01G057800 chr6A 94.705 982 46 6 3233 4209 39999369 39998389 0.000000e+00 1520.0
26 TraesCS3A01G057800 chr1A 94.201 983 50 6 3232 4209 549801378 549802358 0.000000e+00 1493.0
27 TraesCS3A01G057800 chr1A 79.221 231 19 15 366 594 531706252 531706455 2.640000e-27 134.0
28 TraesCS3A01G057800 chr1A 84.337 83 11 2 1653 1734 548531624 548531705 3.490000e-11 80.5
29 TraesCS3A01G057800 chr1A 100.000 29 0 0 3068 3096 138904298 138904270 2.000000e-03 54.7
30 TraesCS3A01G057800 chr2B 89.474 285 29 1 37 320 765787191 765787475 4.000000e-95 359.0
31 TraesCS3A01G057800 chr2B 83.523 176 29 0 1064 1239 42177663 42177838 9.360000e-37 165.0
32 TraesCS3A01G057800 chr6D 86.121 281 24 10 1 280 3828123 3827857 5.320000e-74 289.0
33 TraesCS3A01G057800 chr6D 90.141 71 5 2 2432 2500 411402240 411402310 1.610000e-14 91.6
34 TraesCS3A01G057800 chr2D 85.590 229 26 3 130 356 624028361 624028584 2.530000e-57 233.0
35 TraesCS3A01G057800 chr2D 91.919 99 8 0 37 135 624019357 624019455 5.670000e-29 139.0
36 TraesCS3A01G057800 chr1B 85.253 217 22 6 130 346 452766707 452766913 9.170000e-52 215.0
37 TraesCS3A01G057800 chr1B 71.429 462 105 19 1817 2260 624087965 624088417 3.460000e-16 97.1
38 TraesCS3A01G057800 chr1D 81.301 246 35 7 130 374 337962998 337963233 5.560000e-44 189.0
39 TraesCS3A01G057800 chr1D 82.609 92 16 0 1653 1744 453822410 453822501 9.700000e-12 82.4
40 TraesCS3A01G057800 chr6B 79.654 231 17 16 366 594 704704184 704704386 5.670000e-29 139.0
41 TraesCS3A01G057800 chr7D 96.875 64 2 0 2427 2490 143995741 143995678 1.600000e-19 108.0
42 TraesCS3A01G057800 chr7D 89.333 75 5 3 2428 2499 199607140 199607066 1.610000e-14 91.6
43 TraesCS3A01G057800 chr7A 96.875 64 2 0 2427 2490 145489802 145489865 1.600000e-19 108.0
44 TraesCS3A01G057800 chr7A 91.549 71 4 2 2432 2500 20052885 20052955 3.460000e-16 97.1
45 TraesCS3A01G057800 chrUn 91.549 71 4 2 2432 2500 310882404 310882474 3.460000e-16 97.1
46 TraesCS3A01G057800 chr7B 96.774 31 1 0 3071 3101 678830543 678830573 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G057800 chr3A 33883289 33887497 4208 True 2642.2 7773 90.0900 1 4209 3 chr3A.!!$R2 4208
1 TraesCS3A01G057800 chr3A 109189728 109190704 976 True 1533.0 1533 94.9950 3233 4209 1 chr3A.!!$R1 976
2 TraesCS3A01G057800 chr3A 33200229 33201368 1139 False 488.0 488 74.8260 1066 2193 1 chr3A.!!$F1 1127
3 TraesCS3A01G057800 chr3D 24871258 24873663 2405 True 1955.5 3681 94.0735 761 3222 2 chr3D.!!$R3 2461
4 TraesCS3A01G057800 chr3D 23889294 23889978 684 True 298.0 298 75.1790 1068 1743 1 chr3D.!!$R1 675
5 TraesCS3A01G057800 chr3B 42473443 42476288 2845 True 2114.0 3446 92.6665 367 3222 2 chr3B.!!$R4 2855
6 TraesCS3A01G057800 chr3B 41510140 41510830 690 True 268.0 268 74.3590 1066 1744 1 chr3B.!!$R1 678
7 TraesCS3A01G057800 chr2A 246882699 246883675 976 False 1533.0 1533 94.9900 3233 4209 1 chr2A.!!$F2 976
8 TraesCS3A01G057800 chr5A 706314661 706315640 979 True 1526.0 1526 94.7960 3232 4209 1 chr5A.!!$R2 977
9 TraesCS3A01G057800 chr5A 612578523 612579500 977 True 1511.0 1511 94.5810 3233 4209 1 chr5A.!!$R1 976
10 TraesCS3A01G057800 chr5A 321739444 321740426 982 False 1495.0 1495 94.1060 3227 4209 1 chr5A.!!$F1 982
11 TraesCS3A01G057800 chr4A 590394079 590395055 976 False 1526.0 1526 94.8820 3234 4209 1 chr4A.!!$F1 975
12 TraesCS3A01G057800 chr4A 636165316 636166300 984 False 1491.0 1491 94.0220 3227 4209 1 chr4A.!!$F2 982
13 TraesCS3A01G057800 chr6A 39998389 39999369 980 True 1520.0 1520 94.7050 3233 4209 1 chr6A.!!$R1 976
14 TraesCS3A01G057800 chr1A 549801378 549802358 980 False 1493.0 1493 94.2010 3232 4209 1 chr1A.!!$F3 977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 674 0.036388 GAAATCAGACGGCCCACAGA 60.036 55.000 0.00 0.0 0.00 3.41 F
968 983 0.163574 CGCGGCCAAAAGCAAAAATC 59.836 50.000 2.24 0.0 46.50 2.17 F
1028 1043 0.838554 TCCCCAGTTTCCATCCGTCA 60.839 55.000 0.00 0.0 0.00 4.35 F
1050 1065 1.153249 CACCATAATCGGCCCACGT 60.153 57.895 0.00 0.0 44.69 4.49 F
1882 1918 1.410153 CTAATTGCAGGGCCAATGGTC 59.590 52.381 6.18 0.0 35.70 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1788 1.123077 TCCTATCGGTGATGCAAGCT 58.877 50.000 0.00 0.00 0.00 3.74 R
2286 2324 1.473677 TGCTGCTAAATCACATGGCAC 59.526 47.619 0.00 0.00 0.00 5.01 R
2365 2431 2.286294 GCACACACAAGAACTGACAGAG 59.714 50.000 10.08 0.00 0.00 3.35 R
2872 2945 2.568546 TCTTATTGGAGAGGGCCTCA 57.431 50.000 33.86 15.05 43.76 3.86 R
3426 3502 0.603439 TAAAGACCGACCGTTTGCCC 60.603 55.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.717877 TGCTTCTTCCATCAGAAAAGTGA 58.282 39.130 0.00 0.00 32.24 3.41
23 24 5.319453 TGCTTCTTCCATCAGAAAAGTGAT 58.681 37.500 0.00 0.00 37.68 3.06
24 25 6.475504 TGCTTCTTCCATCAGAAAAGTGATA 58.524 36.000 0.00 0.00 35.30 2.15
25 26 7.114754 TGCTTCTTCCATCAGAAAAGTGATAT 58.885 34.615 0.00 0.00 35.30 1.63
26 27 7.613022 TGCTTCTTCCATCAGAAAAGTGATATT 59.387 33.333 0.00 0.00 35.30 1.28
27 28 8.465201 GCTTCTTCCATCAGAAAAGTGATATTT 58.535 33.333 0.00 0.00 35.30 1.40
29 30 9.519191 TTCTTCCATCAGAAAAGTGATATTTCA 57.481 29.630 2.32 0.00 38.86 2.69
30 31 8.950210 TCTTCCATCAGAAAAGTGATATTTCAC 58.050 33.333 8.12 8.12 42.41 3.18
31 32 8.186821 CTTCCATCAGAAAAGTGATATTTCACC 58.813 37.037 12.07 0.00 42.75 4.02
50 51 9.793259 ATTTCACCAATTTCTAAAGTACTCAGA 57.207 29.630 0.00 0.00 0.00 3.27
51 52 9.793259 TTTCACCAATTTCTAAAGTACTCAGAT 57.207 29.630 0.00 0.00 0.00 2.90
52 53 8.777865 TCACCAATTTCTAAAGTACTCAGATG 57.222 34.615 0.00 0.00 0.00 2.90
53 54 7.824289 TCACCAATTTCTAAAGTACTCAGATGG 59.176 37.037 16.69 16.69 0.00 3.51
54 55 7.607991 CACCAATTTCTAAAGTACTCAGATGGT 59.392 37.037 17.53 17.53 32.15 3.55
55 56 7.607991 ACCAATTTCTAAAGTACTCAGATGGTG 59.392 37.037 20.21 12.87 31.27 4.17
56 57 7.824289 CCAATTTCTAAAGTACTCAGATGGTGA 59.176 37.037 12.98 0.00 0.00 4.02
57 58 9.219603 CAATTTCTAAAGTACTCAGATGGTGAA 57.780 33.333 0.00 0.00 33.60 3.18
58 59 9.793259 AATTTCTAAAGTACTCAGATGGTGAAA 57.207 29.630 0.00 0.37 33.60 2.69
59 60 8.833231 TTTCTAAAGTACTCAGATGGTGAAAG 57.167 34.615 0.00 0.00 33.60 2.62
60 61 7.540474 TCTAAAGTACTCAGATGGTGAAAGT 57.460 36.000 0.00 0.00 33.60 2.66
61 62 7.963532 TCTAAAGTACTCAGATGGTGAAAGTT 58.036 34.615 0.00 0.00 33.60 2.66
62 63 8.088981 TCTAAAGTACTCAGATGGTGAAAGTTC 58.911 37.037 0.00 0.00 33.60 3.01
63 64 5.808366 AGTACTCAGATGGTGAAAGTTCA 57.192 39.130 0.00 0.00 33.60 3.18
64 65 5.788450 AGTACTCAGATGGTGAAAGTTCAG 58.212 41.667 0.00 0.00 37.98 3.02
65 66 4.696479 ACTCAGATGGTGAAAGTTCAGT 57.304 40.909 0.00 0.00 37.98 3.41
66 67 4.384056 ACTCAGATGGTGAAAGTTCAGTG 58.616 43.478 0.00 0.00 37.98 3.66
67 68 4.141620 ACTCAGATGGTGAAAGTTCAGTGT 60.142 41.667 0.00 0.00 37.98 3.55
68 69 4.780815 TCAGATGGTGAAAGTTCAGTGTT 58.219 39.130 0.00 0.00 37.98 3.32
69 70 5.192927 TCAGATGGTGAAAGTTCAGTGTTT 58.807 37.500 0.00 0.00 37.98 2.83
70 71 5.652014 TCAGATGGTGAAAGTTCAGTGTTTT 59.348 36.000 0.00 0.00 37.98 2.43
71 72 6.826231 TCAGATGGTGAAAGTTCAGTGTTTTA 59.174 34.615 0.00 0.00 37.98 1.52
72 73 7.502226 TCAGATGGTGAAAGTTCAGTGTTTTAT 59.498 33.333 0.00 0.00 37.98 1.40
73 74 8.137437 CAGATGGTGAAAGTTCAGTGTTTTATT 58.863 33.333 0.00 0.00 37.98 1.40
74 75 8.352942 AGATGGTGAAAGTTCAGTGTTTTATTC 58.647 33.333 0.00 0.00 37.98 1.75
75 76 7.397892 TGGTGAAAGTTCAGTGTTTTATTCA 57.602 32.000 0.00 0.00 37.98 2.57
76 77 7.254852 TGGTGAAAGTTCAGTGTTTTATTCAC 58.745 34.615 16.12 16.12 42.71 3.18
77 78 7.094162 TGGTGAAAGTTCAGTGTTTTATTCACA 60.094 33.333 21.24 12.02 44.30 3.58
78 79 7.920682 GGTGAAAGTTCAGTGTTTTATTCACAT 59.079 33.333 21.24 0.00 44.30 3.21
79 80 8.745837 GTGAAAGTTCAGTGTTTTATTCACATG 58.254 33.333 17.94 0.00 42.87 3.21
80 81 8.465999 TGAAAGTTCAGTGTTTTATTCACATGT 58.534 29.630 0.00 0.00 38.16 3.21
81 82 9.301153 GAAAGTTCAGTGTTTTATTCACATGTT 57.699 29.630 0.00 0.00 38.16 2.71
83 84 9.950680 AAGTTCAGTGTTTTATTCACATGTTAG 57.049 29.630 0.00 0.00 38.16 2.34
84 85 9.337396 AGTTCAGTGTTTTATTCACATGTTAGA 57.663 29.630 0.00 0.00 38.16 2.10
87 88 9.283768 TCAGTGTTTTATTCACATGTTAGATGT 57.716 29.630 0.00 0.00 38.16 3.06
88 89 9.546909 CAGTGTTTTATTCACATGTTAGATGTC 57.453 33.333 0.00 0.00 38.16 3.06
89 90 9.283768 AGTGTTTTATTCACATGTTAGATGTCA 57.716 29.630 0.00 0.00 38.16 3.58
90 91 9.546909 GTGTTTTATTCACATGTTAGATGTCAG 57.453 33.333 0.00 0.00 36.05 3.51
91 92 9.500785 TGTTTTATTCACATGTTAGATGTCAGA 57.499 29.630 0.00 0.00 0.00 3.27
92 93 9.979270 GTTTTATTCACATGTTAGATGTCAGAG 57.021 33.333 0.00 0.00 0.00 3.35
93 94 9.942850 TTTTATTCACATGTTAGATGTCAGAGA 57.057 29.630 0.00 0.00 0.00 3.10
94 95 9.942850 TTTATTCACATGTTAGATGTCAGAGAA 57.057 29.630 0.00 0.00 0.00 2.87
95 96 9.942850 TTATTCACATGTTAGATGTCAGAGAAA 57.057 29.630 0.00 0.00 0.00 2.52
96 97 8.853077 ATTCACATGTTAGATGTCAGAGAAAA 57.147 30.769 0.00 0.00 0.00 2.29
97 98 7.895975 TCACATGTTAGATGTCAGAGAAAAG 57.104 36.000 0.00 0.00 0.00 2.27
98 99 7.670364 TCACATGTTAGATGTCAGAGAAAAGA 58.330 34.615 0.00 0.00 0.00 2.52
99 100 7.600375 TCACATGTTAGATGTCAGAGAAAAGAC 59.400 37.037 0.00 0.00 35.37 3.01
100 101 7.601886 CACATGTTAGATGTCAGAGAAAAGACT 59.398 37.037 0.00 0.00 35.81 3.24
101 102 8.807118 ACATGTTAGATGTCAGAGAAAAGACTA 58.193 33.333 0.00 0.00 35.81 2.59
102 103 9.814899 CATGTTAGATGTCAGAGAAAAGACTAT 57.185 33.333 0.00 0.00 35.81 2.12
103 104 9.814899 ATGTTAGATGTCAGAGAAAAGACTATG 57.185 33.333 0.00 0.00 35.81 2.23
104 105 8.253810 TGTTAGATGTCAGAGAAAAGACTATGG 58.746 37.037 0.00 0.00 35.81 2.74
105 106 8.470805 GTTAGATGTCAGAGAAAAGACTATGGA 58.529 37.037 0.00 0.00 35.81 3.41
106 107 7.111247 AGATGTCAGAGAAAAGACTATGGAG 57.889 40.000 0.00 0.00 35.81 3.86
107 108 6.894654 AGATGTCAGAGAAAAGACTATGGAGA 59.105 38.462 0.00 0.00 35.81 3.71
108 109 6.274157 TGTCAGAGAAAAGACTATGGAGAC 57.726 41.667 0.00 0.00 35.81 3.36
109 110 6.013379 TGTCAGAGAAAAGACTATGGAGACT 58.987 40.000 0.00 0.00 35.81 3.24
110 111 6.495181 TGTCAGAGAAAAGACTATGGAGACTT 59.505 38.462 0.00 0.00 39.02 3.01
111 112 7.670140 TGTCAGAGAAAAGACTATGGAGACTTA 59.330 37.037 0.00 0.00 36.79 2.24
112 113 7.971722 GTCAGAGAAAAGACTATGGAGACTTAC 59.028 40.741 0.00 0.00 36.79 2.34
113 114 7.891183 TCAGAGAAAAGACTATGGAGACTTACT 59.109 37.037 0.00 0.00 36.79 2.24
114 115 7.973388 CAGAGAAAAGACTATGGAGACTTACTG 59.027 40.741 0.00 0.00 36.79 2.74
115 116 7.891183 AGAGAAAAGACTATGGAGACTTACTGA 59.109 37.037 0.00 0.00 36.79 3.41
116 117 8.062065 AGAAAAGACTATGGAGACTTACTGAG 57.938 38.462 0.00 0.00 36.79 3.35
117 118 7.891183 AGAAAAGACTATGGAGACTTACTGAGA 59.109 37.037 0.00 0.00 36.79 3.27
118 119 8.602472 AAAAGACTATGGAGACTTACTGAGAT 57.398 34.615 0.00 0.00 36.79 2.75
119 120 8.602472 AAAGACTATGGAGACTTACTGAGATT 57.398 34.615 0.00 0.00 36.79 2.40
120 121 7.581213 AGACTATGGAGACTTACTGAGATTG 57.419 40.000 0.00 0.00 0.00 2.67
121 122 7.350382 AGACTATGGAGACTTACTGAGATTGA 58.650 38.462 0.00 0.00 0.00 2.57
122 123 8.004215 AGACTATGGAGACTTACTGAGATTGAT 58.996 37.037 0.00 0.00 0.00 2.57
123 124 7.950512 ACTATGGAGACTTACTGAGATTGATG 58.049 38.462 0.00 0.00 0.00 3.07
124 125 7.782168 ACTATGGAGACTTACTGAGATTGATGA 59.218 37.037 0.00 0.00 0.00 2.92
125 126 6.462552 TGGAGACTTACTGAGATTGATGAG 57.537 41.667 0.00 0.00 0.00 2.90
126 127 5.163468 TGGAGACTTACTGAGATTGATGAGC 60.163 44.000 0.00 0.00 0.00 4.26
127 128 5.163468 GGAGACTTACTGAGATTGATGAGCA 60.163 44.000 0.00 0.00 0.00 4.26
128 129 5.904941 AGACTTACTGAGATTGATGAGCAG 58.095 41.667 0.00 0.00 0.00 4.24
129 130 5.655974 AGACTTACTGAGATTGATGAGCAGA 59.344 40.000 0.00 0.00 0.00 4.26
130 131 5.904941 ACTTACTGAGATTGATGAGCAGAG 58.095 41.667 0.00 0.00 0.00 3.35
131 132 3.182341 ACTGAGATTGATGAGCAGAGC 57.818 47.619 0.00 0.00 0.00 4.09
132 133 2.500504 ACTGAGATTGATGAGCAGAGCA 59.499 45.455 0.00 0.00 0.00 4.26
133 134 3.127589 CTGAGATTGATGAGCAGAGCAG 58.872 50.000 0.00 0.00 0.00 4.24
134 135 1.868498 GAGATTGATGAGCAGAGCAGC 59.132 52.381 0.00 0.00 0.00 5.25
135 136 0.945813 GATTGATGAGCAGAGCAGCC 59.054 55.000 0.00 0.00 34.23 4.85
136 137 0.814410 ATTGATGAGCAGAGCAGCCG 60.814 55.000 0.00 0.00 34.23 5.52
137 138 2.176314 TTGATGAGCAGAGCAGCCGT 62.176 55.000 0.00 0.00 34.23 5.68
138 139 1.882167 GATGAGCAGAGCAGCCGTC 60.882 63.158 0.00 0.00 34.23 4.79
139 140 3.382803 ATGAGCAGAGCAGCCGTCC 62.383 63.158 0.00 0.00 34.23 4.79
140 141 4.828925 GAGCAGAGCAGCCGTCCC 62.829 72.222 0.00 0.00 34.23 4.46
173 174 3.103080 AGGTACTCCTTCCGATCAACT 57.897 47.619 0.00 0.00 42.12 3.16
174 175 4.246712 AGGTACTCCTTCCGATCAACTA 57.753 45.455 0.00 0.00 42.12 2.24
175 176 4.208746 AGGTACTCCTTCCGATCAACTAG 58.791 47.826 0.00 0.00 42.12 2.57
176 177 3.243468 GGTACTCCTTCCGATCAACTAGC 60.243 52.174 0.00 0.00 0.00 3.42
177 178 2.457598 ACTCCTTCCGATCAACTAGCA 58.542 47.619 0.00 0.00 0.00 3.49
178 179 2.428890 ACTCCTTCCGATCAACTAGCAG 59.571 50.000 0.00 0.00 0.00 4.24
179 180 1.757118 TCCTTCCGATCAACTAGCAGG 59.243 52.381 0.00 0.00 0.00 4.85
180 181 1.482593 CCTTCCGATCAACTAGCAGGT 59.517 52.381 0.00 0.00 0.00 4.00
181 182 2.093447 CCTTCCGATCAACTAGCAGGTT 60.093 50.000 0.00 0.00 0.00 3.50
182 183 2.672961 TCCGATCAACTAGCAGGTTG 57.327 50.000 13.34 13.34 45.42 3.77
183 184 1.009829 CCGATCAACTAGCAGGTTGC 58.990 55.000 14.33 0.00 44.19 4.17
192 193 4.379174 GCAGGTTGCTTCTTCCGA 57.621 55.556 0.00 0.00 40.96 4.55
193 194 2.859992 GCAGGTTGCTTCTTCCGAT 58.140 52.632 0.00 0.00 40.96 4.18
194 195 0.729690 GCAGGTTGCTTCTTCCGATC 59.270 55.000 0.00 0.00 40.96 3.69
195 196 1.945819 GCAGGTTGCTTCTTCCGATCA 60.946 52.381 0.00 0.00 40.96 2.92
196 197 2.426522 CAGGTTGCTTCTTCCGATCAA 58.573 47.619 0.00 0.00 0.00 2.57
197 198 3.012518 CAGGTTGCTTCTTCCGATCAAT 58.987 45.455 0.00 0.00 0.00 2.57
198 199 3.441572 CAGGTTGCTTCTTCCGATCAATT 59.558 43.478 0.00 0.00 0.00 2.32
199 200 4.635765 CAGGTTGCTTCTTCCGATCAATTA 59.364 41.667 0.00 0.00 0.00 1.40
200 201 4.878397 AGGTTGCTTCTTCCGATCAATTAG 59.122 41.667 0.00 0.00 0.00 1.73
201 202 4.496507 GGTTGCTTCTTCCGATCAATTAGC 60.497 45.833 0.00 0.00 0.00 3.09
202 203 3.872696 TGCTTCTTCCGATCAATTAGCA 58.127 40.909 0.00 0.00 35.26 3.49
203 204 4.260985 TGCTTCTTCCGATCAATTAGCAA 58.739 39.130 0.00 0.00 34.76 3.91
204 205 4.333649 TGCTTCTTCCGATCAATTAGCAAG 59.666 41.667 0.00 0.00 34.76 4.01
205 206 4.260948 GCTTCTTCCGATCAATTAGCAAGG 60.261 45.833 0.00 0.00 0.00 3.61
206 207 4.753516 TCTTCCGATCAATTAGCAAGGA 57.246 40.909 0.00 0.00 0.00 3.36
207 208 5.097742 TCTTCCGATCAATTAGCAAGGAA 57.902 39.130 0.00 0.00 35.34 3.36
208 209 5.496556 TCTTCCGATCAATTAGCAAGGAAA 58.503 37.500 0.00 0.00 36.08 3.13
209 210 5.943416 TCTTCCGATCAATTAGCAAGGAAAA 59.057 36.000 0.00 0.00 36.08 2.29
210 211 5.560966 TCCGATCAATTAGCAAGGAAAAC 57.439 39.130 0.00 0.00 0.00 2.43
211 212 5.253330 TCCGATCAATTAGCAAGGAAAACT 58.747 37.500 0.00 0.00 0.00 2.66
212 213 5.710099 TCCGATCAATTAGCAAGGAAAACTT 59.290 36.000 0.00 0.00 41.00 2.66
213 214 6.882140 TCCGATCAATTAGCAAGGAAAACTTA 59.118 34.615 0.00 0.00 37.29 2.24
214 215 7.392113 TCCGATCAATTAGCAAGGAAAACTTAA 59.608 33.333 0.00 0.00 37.29 1.85
215 216 8.190784 CCGATCAATTAGCAAGGAAAACTTAAT 58.809 33.333 0.00 0.00 37.29 1.40
216 217 9.226345 CGATCAATTAGCAAGGAAAACTTAATC 57.774 33.333 0.00 0.00 37.29 1.75
224 225 8.822652 AGCAAGGAAAACTTAATCAATTTCTG 57.177 30.769 0.00 0.00 37.29 3.02
225 226 8.424133 AGCAAGGAAAACTTAATCAATTTCTGT 58.576 29.630 0.00 0.00 37.29 3.41
226 227 9.691362 GCAAGGAAAACTTAATCAATTTCTGTA 57.309 29.630 0.00 0.00 37.29 2.74
238 239 8.425577 AATCAATTTCTGTAGTAATCTGACGG 57.574 34.615 0.00 0.00 0.00 4.79
239 240 6.931838 TCAATTTCTGTAGTAATCTGACGGT 58.068 36.000 0.00 0.00 0.00 4.83
240 241 6.811665 TCAATTTCTGTAGTAATCTGACGGTG 59.188 38.462 0.00 0.00 0.00 4.94
241 242 5.970317 TTTCTGTAGTAATCTGACGGTGA 57.030 39.130 0.00 0.00 0.00 4.02
242 243 5.970317 TTCTGTAGTAATCTGACGGTGAA 57.030 39.130 0.00 0.00 0.00 3.18
243 244 5.970317 TCTGTAGTAATCTGACGGTGAAA 57.030 39.130 0.00 0.00 0.00 2.69
244 245 5.950883 TCTGTAGTAATCTGACGGTGAAAG 58.049 41.667 0.00 0.00 0.00 2.62
245 246 5.475909 TCTGTAGTAATCTGACGGTGAAAGT 59.524 40.000 0.00 0.00 0.00 2.66
246 247 6.015688 TCTGTAGTAATCTGACGGTGAAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
247 248 6.154445 TGTAGTAATCTGACGGTGAAAGTTC 58.846 40.000 0.00 0.00 0.00 3.01
248 249 5.209818 AGTAATCTGACGGTGAAAGTTCA 57.790 39.130 0.00 0.00 34.20 3.18
249 250 5.607477 AGTAATCTGACGGTGAAAGTTCAA 58.393 37.500 0.00 0.00 39.21 2.69
250 251 6.231211 AGTAATCTGACGGTGAAAGTTCAAT 58.769 36.000 0.00 0.00 39.21 2.57
251 252 5.613358 AATCTGACGGTGAAAGTTCAATC 57.387 39.130 0.00 0.00 39.21 2.67
252 253 4.066646 TCTGACGGTGAAAGTTCAATCA 57.933 40.909 0.00 0.49 39.21 2.57
253 254 4.447290 TCTGACGGTGAAAGTTCAATCAA 58.553 39.130 0.00 0.00 39.21 2.57
254 255 5.063204 TCTGACGGTGAAAGTTCAATCAAT 58.937 37.500 0.00 0.00 39.21 2.57
255 256 5.530915 TCTGACGGTGAAAGTTCAATCAATT 59.469 36.000 0.00 0.00 39.21 2.32
256 257 6.039270 TCTGACGGTGAAAGTTCAATCAATTT 59.961 34.615 0.00 0.00 39.21 1.82
257 258 6.205784 TGACGGTGAAAGTTCAATCAATTTC 58.794 36.000 0.00 0.00 39.21 2.17
258 259 6.142818 ACGGTGAAAGTTCAATCAATTTCA 57.857 33.333 0.00 0.00 39.21 2.69
259 260 6.208644 ACGGTGAAAGTTCAATCAATTTCAG 58.791 36.000 0.00 0.00 41.05 3.02
260 261 6.039270 ACGGTGAAAGTTCAATCAATTTCAGA 59.961 34.615 0.00 0.00 41.05 3.27
261 262 6.580041 CGGTGAAAGTTCAATCAATTTCAGAG 59.420 38.462 0.00 0.00 41.05 3.35
262 263 7.428826 GGTGAAAGTTCAATCAATTTCAGAGT 58.571 34.615 0.00 0.00 41.05 3.24
263 264 7.922811 GGTGAAAGTTCAATCAATTTCAGAGTT 59.077 33.333 0.00 0.00 41.05 3.01
264 265 9.305925 GTGAAAGTTCAATCAATTTCAGAGTTT 57.694 29.630 0.00 0.00 41.05 2.66
265 266 9.520204 TGAAAGTTCAATCAATTTCAGAGTTTC 57.480 29.630 0.00 0.00 36.89 2.78
266 267 9.520204 GAAAGTTCAATCAATTTCAGAGTTTCA 57.480 29.630 0.00 0.00 33.01 2.69
269 270 9.688592 AGTTCAATCAATTTCAGAGTTTCATTC 57.311 29.630 0.00 0.00 0.00 2.67
270 271 9.467258 GTTCAATCAATTTCAGAGTTTCATTCA 57.533 29.630 0.00 0.00 0.00 2.57
275 276 9.991906 ATCAATTTCAGAGTTTCATTCATTTGT 57.008 25.926 0.00 0.00 0.00 2.83
276 277 9.820725 TCAATTTCAGAGTTTCATTCATTTGTT 57.179 25.926 0.00 0.00 0.00 2.83
310 311 8.423906 AAGAAAAGACTATGGAGACTTACTGA 57.576 34.615 0.00 0.00 36.79 3.41
311 312 8.062065 AGAAAAGACTATGGAGACTTACTGAG 57.938 38.462 0.00 0.00 36.79 3.35
312 313 7.891183 AGAAAAGACTATGGAGACTTACTGAGA 59.109 37.037 0.00 0.00 36.79 3.27
313 314 8.602472 AAAAGACTATGGAGACTTACTGAGAT 57.398 34.615 0.00 0.00 36.79 2.75
314 315 8.602472 AAAGACTATGGAGACTTACTGAGATT 57.398 34.615 0.00 0.00 36.79 2.40
315 316 7.581213 AGACTATGGAGACTTACTGAGATTG 57.419 40.000 0.00 0.00 0.00 2.67
316 317 7.350382 AGACTATGGAGACTTACTGAGATTGA 58.650 38.462 0.00 0.00 0.00 2.57
317 318 7.284489 AGACTATGGAGACTTACTGAGATTGAC 59.716 40.741 0.00 0.00 0.00 3.18
318 319 4.703645 TGGAGACTTACTGAGATTGACG 57.296 45.455 0.00 0.00 0.00 4.35
319 320 4.332828 TGGAGACTTACTGAGATTGACGA 58.667 43.478 0.00 0.00 0.00 4.20
320 321 4.765339 TGGAGACTTACTGAGATTGACGAA 59.235 41.667 0.00 0.00 0.00 3.85
321 322 5.243060 TGGAGACTTACTGAGATTGACGAAA 59.757 40.000 0.00 0.00 0.00 3.46
322 323 5.573669 GGAGACTTACTGAGATTGACGAAAC 59.426 44.000 0.00 0.00 0.00 2.78
323 324 5.154932 AGACTTACTGAGATTGACGAAACG 58.845 41.667 0.00 0.00 0.00 3.60
324 325 5.048921 AGACTTACTGAGATTGACGAAACGA 60.049 40.000 0.00 0.00 0.00 3.85
325 326 5.154932 ACTTACTGAGATTGACGAAACGAG 58.845 41.667 0.00 0.00 0.00 4.18
326 327 2.329379 ACTGAGATTGACGAAACGAGC 58.671 47.619 0.00 0.00 0.00 5.03
327 328 2.288213 ACTGAGATTGACGAAACGAGCA 60.288 45.455 0.00 0.00 0.00 4.26
328 329 2.328473 TGAGATTGACGAAACGAGCAG 58.672 47.619 0.00 0.00 0.00 4.24
329 330 2.030274 TGAGATTGACGAAACGAGCAGA 60.030 45.455 0.00 0.00 0.00 4.26
330 331 2.596419 GAGATTGACGAAACGAGCAGAG 59.404 50.000 0.00 0.00 0.00 3.35
331 332 2.029828 AGATTGACGAAACGAGCAGAGT 60.030 45.455 0.00 0.00 0.00 3.24
332 333 3.190744 AGATTGACGAAACGAGCAGAGTA 59.809 43.478 0.00 0.00 0.00 2.59
333 334 2.327081 TGACGAAACGAGCAGAGTAC 57.673 50.000 0.00 0.00 0.00 2.73
334 335 1.068748 TGACGAAACGAGCAGAGTACC 60.069 52.381 0.00 0.00 0.00 3.34
335 336 0.956633 ACGAAACGAGCAGAGTACCA 59.043 50.000 0.00 0.00 0.00 3.25
336 337 1.068472 ACGAAACGAGCAGAGTACCAG 60.068 52.381 0.00 0.00 0.00 4.00
337 338 1.068472 CGAAACGAGCAGAGTACCAGT 60.068 52.381 0.00 0.00 0.00 4.00
338 339 2.597520 GAAACGAGCAGAGTACCAGTC 58.402 52.381 0.00 0.00 0.00 3.51
339 340 0.889306 AACGAGCAGAGTACCAGTCC 59.111 55.000 0.00 0.00 0.00 3.85
340 341 0.966370 ACGAGCAGAGTACCAGTCCC 60.966 60.000 0.00 0.00 0.00 4.46
341 342 0.965866 CGAGCAGAGTACCAGTCCCA 60.966 60.000 0.00 0.00 0.00 4.37
342 343 0.820871 GAGCAGAGTACCAGTCCCAG 59.179 60.000 0.00 0.00 0.00 4.45
343 344 1.219393 GCAGAGTACCAGTCCCAGC 59.781 63.158 0.00 0.00 0.00 4.85
344 345 1.901085 CAGAGTACCAGTCCCAGCC 59.099 63.158 0.00 0.00 0.00 4.85
345 346 1.682684 AGAGTACCAGTCCCAGCCG 60.683 63.158 0.00 0.00 0.00 5.52
346 347 2.683933 AGTACCAGTCCCAGCCGG 60.684 66.667 0.00 0.00 0.00 6.13
347 348 4.468689 GTACCAGTCCCAGCCGGC 62.469 72.222 21.89 21.89 0.00 6.13
396 397 2.026879 CTCGCTTCCCTCGCTAGC 59.973 66.667 4.06 4.06 0.00 3.42
415 416 4.100084 TCGGACTGGGCTGCATGG 62.100 66.667 0.50 0.00 0.00 3.66
442 443 5.627367 CGTTATTTCTGAGCGAGAAGGATAG 59.373 44.000 0.00 0.00 41.86 2.08
461 462 1.517361 CGCAGGCTGTAGTCCATGA 59.483 57.895 17.16 0.00 0.00 3.07
463 464 0.250234 GCAGGCTGTAGTCCATGACA 59.750 55.000 17.16 0.00 34.60 3.58
471 472 3.990092 TGTAGTCCATGACACTTGTGTC 58.010 45.455 22.60 22.60 39.15 3.67
478 479 2.760634 TGACACTTGTGTCTGTGTGT 57.239 45.000 27.23 0.00 45.94 3.72
481 482 3.056465 TGACACTTGTGTCTGTGTGTACA 60.056 43.478 27.23 8.28 45.94 2.90
490 491 4.546637 GTGTGTACACGACGGGAG 57.453 61.111 20.61 0.00 37.10 4.30
491 492 1.951510 GTGTGTACACGACGGGAGA 59.048 57.895 20.61 0.00 37.10 3.71
492 493 0.109873 GTGTGTACACGACGGGAGAG 60.110 60.000 20.61 0.00 37.10 3.20
510 517 0.322975 AGAAGAGCGCACCTCACAAT 59.677 50.000 11.47 0.00 43.31 2.71
516 523 0.110056 GCGCACCTCACAATGAGTTG 60.110 55.000 0.30 2.30 42.80 3.16
518 525 1.195448 CGCACCTCACAATGAGTTGTC 59.805 52.381 5.43 0.00 45.14 3.18
519 526 2.221169 GCACCTCACAATGAGTTGTCA 58.779 47.619 5.43 0.00 45.14 3.58
520 527 2.225019 GCACCTCACAATGAGTTGTCAG 59.775 50.000 5.43 0.00 45.14 3.51
521 528 3.732212 CACCTCACAATGAGTTGTCAGA 58.268 45.455 5.18 0.00 45.14 3.27
522 529 4.321718 CACCTCACAATGAGTTGTCAGAT 58.678 43.478 5.18 0.00 45.14 2.90
523 530 4.391216 CACCTCACAATGAGTTGTCAGATC 59.609 45.833 5.18 0.00 45.14 2.75
524 531 3.615937 CCTCACAATGAGTTGTCAGATCG 59.384 47.826 5.18 0.00 45.14 3.69
525 532 2.995939 TCACAATGAGTTGTCAGATCGC 59.004 45.455 0.00 0.00 45.14 4.58
526 533 2.094894 CACAATGAGTTGTCAGATCGCC 59.905 50.000 0.00 0.00 45.14 5.54
527 534 2.289631 ACAATGAGTTGTCAGATCGCCA 60.290 45.455 0.00 0.00 45.14 5.69
528 535 2.743664 CAATGAGTTGTCAGATCGCCAA 59.256 45.455 0.00 0.00 35.66 4.52
529 536 1.795768 TGAGTTGTCAGATCGCCAAC 58.204 50.000 13.82 13.82 38.94 3.77
530 537 0.716108 GAGTTGTCAGATCGCCAACG 59.284 55.000 15.00 0.00 42.45 4.10
531 538 5.476047 ATGAGTTGTCAGATCGCCAACGA 62.476 47.826 15.00 9.36 44.55 3.85
588 595 6.201591 AGATTGGTCTAAGTCAGAGGATCTT 58.798 40.000 0.00 0.00 36.53 2.40
621 628 2.508751 GGATCCCGACCAGGTAGCC 61.509 68.421 0.00 0.00 38.74 3.93
654 661 1.520564 CGACGCGGGATGGAAATCA 60.521 57.895 12.47 0.00 0.00 2.57
663 670 0.107214 GATGGAAATCAGACGGCCCA 60.107 55.000 0.00 0.00 0.00 5.36
664 671 0.394352 ATGGAAATCAGACGGCCCAC 60.394 55.000 0.00 0.00 0.00 4.61
667 674 0.036388 GAAATCAGACGGCCCACAGA 60.036 55.000 0.00 0.00 0.00 3.41
670 677 2.805313 ATCAGACGGCCCACAGAGGA 62.805 60.000 0.00 0.00 41.22 3.71
677 684 2.047844 CCCACAGAGGAGTGTGCG 60.048 66.667 0.00 0.00 45.55 5.34
679 686 2.341543 CACAGAGGAGTGTGCGCT 59.658 61.111 9.73 0.00 41.39 5.92
680 687 1.735920 CACAGAGGAGTGTGCGCTC 60.736 63.158 9.73 5.51 41.39 5.03
694 701 3.064324 GCTCGGGGCTGCAAACAT 61.064 61.111 0.50 0.00 38.06 2.71
705 712 0.238025 TGCAAACATGTACAGCTGCG 59.762 50.000 15.27 0.00 32.45 5.18
720 727 4.142600 ACAGCTGCGCTTTTTAGGATTTAG 60.143 41.667 15.27 0.00 36.40 1.85
820 827 1.689273 AGATTCATGGTCCGAGTAGGC 59.311 52.381 0.00 0.00 40.77 3.93
913 928 3.503748 AGAAGGGAAACAGAGCAAATTCG 59.496 43.478 0.00 0.00 0.00 3.34
935 950 1.413382 GCATCAATCGCTCCTCGTAG 58.587 55.000 0.00 0.00 39.67 3.51
951 966 0.938008 GTAGTGCAAATCTAGGCCGC 59.062 55.000 0.00 0.00 0.00 6.53
952 967 0.529773 TAGTGCAAATCTAGGCCGCG 60.530 55.000 0.00 0.00 0.00 6.46
953 968 2.513666 TGCAAATCTAGGCCGCGG 60.514 61.111 24.05 24.05 0.00 6.46
954 969 3.953887 GCAAATCTAGGCCGCGGC 61.954 66.667 41.63 41.63 41.06 6.53
964 979 4.959596 GCCGCGGCCAAAAGCAAA 62.960 61.111 39.89 0.00 46.50 3.68
965 980 2.279784 CCGCGGCCAAAAGCAAAA 60.280 55.556 14.67 0.00 46.50 2.44
966 981 1.884926 CCGCGGCCAAAAGCAAAAA 60.885 52.632 14.67 0.00 46.50 1.94
967 982 1.227342 CCGCGGCCAAAAGCAAAAAT 61.227 50.000 14.67 0.00 46.50 1.82
968 983 0.163574 CGCGGCCAAAAGCAAAAATC 59.836 50.000 2.24 0.00 46.50 2.17
969 984 1.511850 GCGGCCAAAAGCAAAAATCT 58.488 45.000 2.24 0.00 46.50 2.40
970 985 1.195222 GCGGCCAAAAGCAAAAATCTG 59.805 47.619 2.24 0.00 46.50 2.90
971 986 1.195222 CGGCCAAAAGCAAAAATCTGC 59.805 47.619 2.24 0.00 46.50 4.26
972 987 1.536766 GGCCAAAAGCAAAAATCTGCC 59.463 47.619 0.00 0.00 46.50 4.85
973 988 1.195222 GCCAAAAGCAAAAATCTGCCG 59.805 47.619 0.00 0.00 43.73 5.69
974 989 2.753296 CCAAAAGCAAAAATCTGCCGA 58.247 42.857 0.00 0.00 43.73 5.54
975 990 3.129871 CCAAAAGCAAAAATCTGCCGAA 58.870 40.909 0.00 0.00 43.73 4.30
976 991 3.747529 CCAAAAGCAAAAATCTGCCGAAT 59.252 39.130 0.00 0.00 43.73 3.34
977 992 4.213906 CCAAAAGCAAAAATCTGCCGAATT 59.786 37.500 0.00 0.00 43.73 2.17
978 993 5.376537 CAAAAGCAAAAATCTGCCGAATTC 58.623 37.500 0.00 0.00 43.73 2.17
979 994 3.236632 AGCAAAAATCTGCCGAATTCC 57.763 42.857 0.00 0.00 43.73 3.01
980 995 2.094026 AGCAAAAATCTGCCGAATTCCC 60.094 45.455 0.00 0.00 43.73 3.97
981 996 2.892374 CAAAAATCTGCCGAATTCCCC 58.108 47.619 0.00 0.00 0.00 4.81
982 997 2.230130 AAAATCTGCCGAATTCCCCA 57.770 45.000 0.00 0.00 0.00 4.96
983 998 2.230130 AAATCTGCCGAATTCCCCAA 57.770 45.000 0.00 0.00 0.00 4.12
984 999 2.230130 AATCTGCCGAATTCCCCAAA 57.770 45.000 0.00 0.00 0.00 3.28
985 1000 2.459555 ATCTGCCGAATTCCCCAAAT 57.540 45.000 0.00 0.00 0.00 2.32
995 1010 4.344104 GAATTCCCCAAATCCTCTTGTCA 58.656 43.478 0.00 0.00 0.00 3.58
1012 1027 4.916041 TGTCAATCCATGGATATCTCCC 57.084 45.455 27.54 12.50 41.29 4.30
1028 1043 0.838554 TCCCCAGTTTCCATCCGTCA 60.839 55.000 0.00 0.00 0.00 4.35
1050 1065 1.153249 CACCATAATCGGCCCACGT 60.153 57.895 0.00 0.00 44.69 4.49
1479 1512 2.226437 CGAGCACTATGTTGTTGCCTTT 59.774 45.455 0.00 0.00 0.00 3.11
1488 1521 3.499338 TGTTGTTGCCTTTCTCCATCAT 58.501 40.909 0.00 0.00 0.00 2.45
1541 1574 7.412346 GCATTATTATGCGTACATCTTCTCCTG 60.412 40.741 0.20 0.00 46.89 3.86
1845 1881 5.276114 CGATGATCTGATCAAGTTTGTCGAC 60.276 44.000 24.07 9.11 43.50 4.20
1882 1918 1.410153 CTAATTGCAGGGCCAATGGTC 59.590 52.381 6.18 0.00 35.70 4.02
2200 2236 2.925563 GTTTCTACCCAACCGTCATACG 59.074 50.000 0.00 0.00 42.11 3.06
2365 2431 5.469084 ACCGGAACTTTTGTACTCTTGATTC 59.531 40.000 9.46 0.00 0.00 2.52
2407 2473 6.049149 GTGCTTGCTTAGGAGAATGTATGTA 58.951 40.000 0.00 0.00 0.00 2.29
2427 2493 9.850628 GTATGTATCAGTACTAACACTGTTGAA 57.149 33.333 4.57 0.00 45.11 2.69
2440 2506 7.581213 AACACTGTTGAAATTTACTCCATCA 57.419 32.000 0.00 0.00 0.00 3.07
2838 2911 6.828273 CCTGTATCCATCTGTTTTGTCCATTA 59.172 38.462 0.00 0.00 0.00 1.90
2912 2985 4.400567 AGAATTAAGAAGTGCTCCATTGCC 59.599 41.667 0.00 0.00 0.00 4.52
2917 2990 0.963962 AAGTGCTCCATTGCCAAGTG 59.036 50.000 0.00 0.00 0.00 3.16
3072 3147 1.554160 CTCTGGAGGAAGTGTGCAGAT 59.446 52.381 0.00 0.00 41.04 2.90
3095 3170 4.202727 TGAAGAGGAGGAGGAAGAAGAAGA 60.203 45.833 0.00 0.00 0.00 2.87
3098 3173 2.837591 AGGAGGAGGAAGAAGAAGAAGC 59.162 50.000 0.00 0.00 0.00 3.86
3099 3174 2.569404 GGAGGAGGAAGAAGAAGAAGCA 59.431 50.000 0.00 0.00 0.00 3.91
3100 3175 3.369366 GGAGGAGGAAGAAGAAGAAGCAG 60.369 52.174 0.00 0.00 0.00 4.24
3101 3176 2.571202 AGGAGGAAGAAGAAGAAGCAGG 59.429 50.000 0.00 0.00 0.00 4.85
3102 3177 2.304470 GGAGGAAGAAGAAGAAGCAGGT 59.696 50.000 0.00 0.00 0.00 4.00
3105 3180 3.904339 AGGAAGAAGAAGAAGCAGGTACA 59.096 43.478 0.00 0.00 0.00 2.90
3130 3205 3.024050 GCGGATTGCTGGTTGGAACAA 62.024 52.381 0.00 0.00 42.74 2.83
3197 3272 9.173021 TCTTTGTAAAAGTGTTCTTTCATCTGA 57.827 29.630 0.05 0.00 42.26 3.27
3222 3297 9.250624 GACTGGAATGTAATAGTCAGTATGTTC 57.749 37.037 0.00 0.00 39.39 3.18
3223 3298 8.758829 ACTGGAATGTAATAGTCAGTATGTTCA 58.241 33.333 0.00 0.00 37.40 3.18
3224 3299 9.254133 CTGGAATGTAATAGTCAGTATGTTCAG 57.746 37.037 0.00 0.00 37.40 3.02
3225 3300 8.204160 TGGAATGTAATAGTCAGTATGTTCAGG 58.796 37.037 0.00 0.00 37.40 3.86
3226 3301 7.657761 GGAATGTAATAGTCAGTATGTTCAGGG 59.342 40.741 0.00 0.00 37.40 4.45
3227 3302 5.914033 TGTAATAGTCAGTATGTTCAGGGC 58.086 41.667 0.00 0.00 37.40 5.19
3228 3303 4.423625 AATAGTCAGTATGTTCAGGGCC 57.576 45.455 0.00 0.00 37.40 5.80
3229 3304 0.537188 AGTCAGTATGTTCAGGGCCG 59.463 55.000 0.00 0.00 37.40 6.13
3230 3305 0.249398 GTCAGTATGTTCAGGGCCGT 59.751 55.000 0.00 0.00 37.40 5.68
3400 3476 0.031721 ACGAAGACAACCACTCGACC 59.968 55.000 0.00 0.00 0.00 4.79
3426 3502 1.536284 GGGATCTAAAGTCACTCCGCG 60.536 57.143 0.00 0.00 0.00 6.46
3496 3572 1.935799 TAGGGGCGTTACCAGTAACA 58.064 50.000 18.14 0.00 44.12 2.41
3510 3586 4.105057 ACCAGTAACACCCAACCTTAATGA 59.895 41.667 0.00 0.00 0.00 2.57
3535 3612 4.324254 CCTTAAACCCTGCATTACTGAGGA 60.324 45.833 0.00 0.00 0.00 3.71
3579 3658 0.253630 ATAAGCCACCCCCTCCTCAA 60.254 55.000 0.00 0.00 0.00 3.02
3670 3750 1.295423 GGCTGTTACTTCCTCCGCA 59.705 57.895 0.00 0.00 0.00 5.69
3764 3847 1.137872 CCCCTACATCACTGTCAGAGC 59.862 57.143 6.91 0.00 36.79 4.09
3810 3893 1.998438 TGGGGCCGGAATCTTAGCA 60.998 57.895 5.05 0.00 0.00 3.49
3844 3928 2.161609 AGTTGCGATTTTTCCGATCACC 59.838 45.455 0.00 0.00 0.00 4.02
3925 4009 0.248661 CGTTCATCGCCGATGACTCT 60.249 55.000 27.99 0.00 46.87 3.24
3936 4020 1.005340 GATGACTCTGCTTGGCTTCG 58.995 55.000 0.00 0.00 0.00 3.79
3965 4049 4.863539 TCGACATCGACGCGCTCG 62.864 66.667 20.09 20.09 44.22 5.03
4183 4267 1.030488 TCGAGCCCGACGAATCTCTT 61.030 55.000 0.00 0.00 40.30 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.717877 TCACTTTTCTGATGGAAGAAGCA 58.282 39.130 0.00 0.00 37.48 3.91
1 2 5.893897 ATCACTTTTCTGATGGAAGAAGC 57.106 39.130 3.84 0.00 37.48 3.86
24 25 9.793259 TCTGAGTACTTTAGAAATTGGTGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
25 26 9.793259 ATCTGAGTACTTTAGAAATTGGTGAAA 57.207 29.630 12.90 0.00 0.00 2.69
26 27 9.219603 CATCTGAGTACTTTAGAAATTGGTGAA 57.780 33.333 12.90 0.00 0.00 3.18
27 28 7.824289 CCATCTGAGTACTTTAGAAATTGGTGA 59.176 37.037 12.90 0.00 0.00 4.02
28 29 7.607991 ACCATCTGAGTACTTTAGAAATTGGTG 59.392 37.037 21.75 12.78 32.81 4.17
29 30 7.607991 CACCATCTGAGTACTTTAGAAATTGGT 59.392 37.037 19.19 19.19 33.74 3.67
30 31 7.824289 TCACCATCTGAGTACTTTAGAAATTGG 59.176 37.037 18.37 18.37 0.00 3.16
31 32 8.777865 TCACCATCTGAGTACTTTAGAAATTG 57.222 34.615 12.90 10.31 0.00 2.32
32 33 9.793259 TTTCACCATCTGAGTACTTTAGAAATT 57.207 29.630 12.90 0.00 0.00 1.82
33 34 9.442047 CTTTCACCATCTGAGTACTTTAGAAAT 57.558 33.333 12.90 2.27 0.00 2.17
34 35 8.429641 ACTTTCACCATCTGAGTACTTTAGAAA 58.570 33.333 12.90 7.51 0.00 2.52
35 36 7.963532 ACTTTCACCATCTGAGTACTTTAGAA 58.036 34.615 12.90 1.33 0.00 2.10
36 37 7.540474 ACTTTCACCATCTGAGTACTTTAGA 57.460 36.000 11.69 11.69 0.00 2.10
37 38 7.872993 TGAACTTTCACCATCTGAGTACTTTAG 59.127 37.037 0.00 0.00 31.01 1.85
38 39 7.732025 TGAACTTTCACCATCTGAGTACTTTA 58.268 34.615 0.00 0.00 31.01 1.85
39 40 6.591935 TGAACTTTCACCATCTGAGTACTTT 58.408 36.000 0.00 0.00 31.01 2.66
40 41 6.174720 TGAACTTTCACCATCTGAGTACTT 57.825 37.500 0.00 0.00 31.01 2.24
41 42 5.305644 ACTGAACTTTCACCATCTGAGTACT 59.694 40.000 0.00 0.00 32.90 2.73
42 43 5.406780 CACTGAACTTTCACCATCTGAGTAC 59.593 44.000 0.00 0.00 32.90 2.73
43 44 5.070446 ACACTGAACTTTCACCATCTGAGTA 59.930 40.000 0.00 0.00 32.90 2.59
44 45 4.141620 ACACTGAACTTTCACCATCTGAGT 60.142 41.667 0.00 0.00 32.90 3.41
45 46 4.384056 ACACTGAACTTTCACCATCTGAG 58.616 43.478 0.00 0.00 32.90 3.35
46 47 4.422073 ACACTGAACTTTCACCATCTGA 57.578 40.909 0.00 0.00 32.90 3.27
47 48 5.505173 AAACACTGAACTTTCACCATCTG 57.495 39.130 0.00 0.00 32.90 2.90
48 49 7.823745 ATAAAACACTGAACTTTCACCATCT 57.176 32.000 0.00 0.00 32.90 2.90
49 50 8.134895 TGAATAAAACACTGAACTTTCACCATC 58.865 33.333 0.00 0.00 32.90 3.51
50 51 7.920682 GTGAATAAAACACTGAACTTTCACCAT 59.079 33.333 0.00 0.00 37.05 3.55
51 52 7.094162 TGTGAATAAAACACTGAACTTTCACCA 60.094 33.333 9.25 0.00 40.41 4.17
52 53 7.254852 TGTGAATAAAACACTGAACTTTCACC 58.745 34.615 9.25 0.00 40.41 4.02
53 54 8.745837 CATGTGAATAAAACACTGAACTTTCAC 58.254 33.333 0.00 0.00 41.11 3.18
54 55 8.465999 ACATGTGAATAAAACACTGAACTTTCA 58.534 29.630 0.00 0.00 38.81 2.69
55 56 8.856490 ACATGTGAATAAAACACTGAACTTTC 57.144 30.769 0.00 0.00 38.81 2.62
57 58 9.950680 CTAACATGTGAATAAAACACTGAACTT 57.049 29.630 0.00 0.00 38.81 2.66
58 59 9.337396 TCTAACATGTGAATAAAACACTGAACT 57.663 29.630 0.00 0.00 38.81 3.01
61 62 9.283768 ACATCTAACATGTGAATAAAACACTGA 57.716 29.630 0.00 0.00 38.81 3.41
62 63 9.546909 GACATCTAACATGTGAATAAAACACTG 57.453 33.333 0.00 0.00 38.81 3.66
63 64 9.283768 TGACATCTAACATGTGAATAAAACACT 57.716 29.630 0.00 0.00 38.81 3.55
64 65 9.546909 CTGACATCTAACATGTGAATAAAACAC 57.453 33.333 0.00 0.00 38.55 3.32
65 66 9.500785 TCTGACATCTAACATGTGAATAAAACA 57.499 29.630 0.00 0.00 31.52 2.83
66 67 9.979270 CTCTGACATCTAACATGTGAATAAAAC 57.021 33.333 0.00 0.00 31.52 2.43
67 68 9.942850 TCTCTGACATCTAACATGTGAATAAAA 57.057 29.630 0.00 0.00 31.52 1.52
68 69 9.942850 TTCTCTGACATCTAACATGTGAATAAA 57.057 29.630 0.00 0.00 31.52 1.40
69 70 9.942850 TTTCTCTGACATCTAACATGTGAATAA 57.057 29.630 0.00 0.00 31.52 1.40
70 71 9.942850 TTTTCTCTGACATCTAACATGTGAATA 57.057 29.630 0.00 0.00 31.52 1.75
71 72 8.853077 TTTTCTCTGACATCTAACATGTGAAT 57.147 30.769 0.00 0.00 31.52 2.57
72 73 8.150296 TCTTTTCTCTGACATCTAACATGTGAA 58.850 33.333 0.00 0.00 31.52 3.18
73 74 7.600375 GTCTTTTCTCTGACATCTAACATGTGA 59.400 37.037 0.00 0.00 33.75 3.58
74 75 7.601886 AGTCTTTTCTCTGACATCTAACATGTG 59.398 37.037 0.00 0.00 35.81 3.21
75 76 7.675062 AGTCTTTTCTCTGACATCTAACATGT 58.325 34.615 0.00 0.00 35.81 3.21
76 77 9.814899 ATAGTCTTTTCTCTGACATCTAACATG 57.185 33.333 0.00 0.00 35.81 3.21
77 78 9.814899 CATAGTCTTTTCTCTGACATCTAACAT 57.185 33.333 0.00 0.00 35.81 2.71
78 79 8.253810 CCATAGTCTTTTCTCTGACATCTAACA 58.746 37.037 0.00 0.00 35.81 2.41
79 80 8.470805 TCCATAGTCTTTTCTCTGACATCTAAC 58.529 37.037 0.00 0.00 35.81 2.34
80 81 8.595362 TCCATAGTCTTTTCTCTGACATCTAA 57.405 34.615 0.00 0.00 35.81 2.10
81 82 8.055790 TCTCCATAGTCTTTTCTCTGACATCTA 58.944 37.037 0.00 0.00 35.81 1.98
82 83 6.894654 TCTCCATAGTCTTTTCTCTGACATCT 59.105 38.462 0.00 0.00 35.81 2.90
83 84 6.978080 GTCTCCATAGTCTTTTCTCTGACATC 59.022 42.308 0.00 0.00 35.81 3.06
84 85 6.667414 AGTCTCCATAGTCTTTTCTCTGACAT 59.333 38.462 0.00 0.00 35.81 3.06
85 86 6.013379 AGTCTCCATAGTCTTTTCTCTGACA 58.987 40.000 0.00 0.00 35.81 3.58
86 87 6.524101 AGTCTCCATAGTCTTTTCTCTGAC 57.476 41.667 0.00 0.00 0.00 3.51
87 88 7.891183 AGTAAGTCTCCATAGTCTTTTCTCTGA 59.109 37.037 0.00 0.00 33.82 3.27
88 89 7.973388 CAGTAAGTCTCCATAGTCTTTTCTCTG 59.027 40.741 0.00 0.00 33.82 3.35
89 90 7.891183 TCAGTAAGTCTCCATAGTCTTTTCTCT 59.109 37.037 0.00 0.00 33.82 3.10
90 91 8.057536 TCAGTAAGTCTCCATAGTCTTTTCTC 57.942 38.462 0.00 0.00 33.82 2.87
91 92 7.891183 TCTCAGTAAGTCTCCATAGTCTTTTCT 59.109 37.037 0.00 0.00 33.82 2.52
92 93 8.057536 TCTCAGTAAGTCTCCATAGTCTTTTC 57.942 38.462 0.00 0.00 33.82 2.29
93 94 8.602472 ATCTCAGTAAGTCTCCATAGTCTTTT 57.398 34.615 0.00 0.00 33.82 2.27
94 95 8.474025 CAATCTCAGTAAGTCTCCATAGTCTTT 58.526 37.037 0.00 0.00 33.82 2.52
95 96 7.836685 TCAATCTCAGTAAGTCTCCATAGTCTT 59.163 37.037 0.00 0.00 35.62 3.01
96 97 7.350382 TCAATCTCAGTAAGTCTCCATAGTCT 58.650 38.462 0.00 0.00 0.00 3.24
97 98 7.575414 TCAATCTCAGTAAGTCTCCATAGTC 57.425 40.000 0.00 0.00 0.00 2.59
98 99 7.782168 TCATCAATCTCAGTAAGTCTCCATAGT 59.218 37.037 0.00 0.00 0.00 2.12
99 100 8.175925 TCATCAATCTCAGTAAGTCTCCATAG 57.824 38.462 0.00 0.00 0.00 2.23
100 101 7.255766 GCTCATCAATCTCAGTAAGTCTCCATA 60.256 40.741 0.00 0.00 0.00 2.74
101 102 6.462768 GCTCATCAATCTCAGTAAGTCTCCAT 60.463 42.308 0.00 0.00 0.00 3.41
102 103 5.163468 GCTCATCAATCTCAGTAAGTCTCCA 60.163 44.000 0.00 0.00 0.00 3.86
103 104 5.163468 TGCTCATCAATCTCAGTAAGTCTCC 60.163 44.000 0.00 0.00 0.00 3.71
104 105 5.900425 TGCTCATCAATCTCAGTAAGTCTC 58.100 41.667 0.00 0.00 0.00 3.36
105 106 5.655974 TCTGCTCATCAATCTCAGTAAGTCT 59.344 40.000 0.00 0.00 0.00 3.24
106 107 5.900425 TCTGCTCATCAATCTCAGTAAGTC 58.100 41.667 0.00 0.00 0.00 3.01
107 108 5.681954 GCTCTGCTCATCAATCTCAGTAAGT 60.682 44.000 0.00 0.00 0.00 2.24
108 109 4.746115 GCTCTGCTCATCAATCTCAGTAAG 59.254 45.833 0.00 0.00 0.00 2.34
109 110 4.161001 TGCTCTGCTCATCAATCTCAGTAA 59.839 41.667 0.00 0.00 0.00 2.24
110 111 3.703052 TGCTCTGCTCATCAATCTCAGTA 59.297 43.478 0.00 0.00 0.00 2.74
111 112 2.500504 TGCTCTGCTCATCAATCTCAGT 59.499 45.455 0.00 0.00 0.00 3.41
112 113 3.127589 CTGCTCTGCTCATCAATCTCAG 58.872 50.000 0.00 0.00 0.00 3.35
113 114 2.742204 GCTGCTCTGCTCATCAATCTCA 60.742 50.000 0.00 0.00 0.00 3.27
114 115 1.868498 GCTGCTCTGCTCATCAATCTC 59.132 52.381 0.00 0.00 0.00 2.75
115 116 1.475392 GGCTGCTCTGCTCATCAATCT 60.475 52.381 0.00 0.00 0.00 2.40
116 117 0.945813 GGCTGCTCTGCTCATCAATC 59.054 55.000 0.00 0.00 0.00 2.67
117 118 0.814410 CGGCTGCTCTGCTCATCAAT 60.814 55.000 0.00 0.00 0.00 2.57
118 119 1.449070 CGGCTGCTCTGCTCATCAA 60.449 57.895 0.00 0.00 0.00 2.57
119 120 2.186125 CGGCTGCTCTGCTCATCA 59.814 61.111 0.00 0.00 0.00 3.07
120 121 1.882167 GACGGCTGCTCTGCTCATC 60.882 63.158 0.00 0.00 0.00 2.92
121 122 2.186384 GACGGCTGCTCTGCTCAT 59.814 61.111 0.00 0.00 0.00 2.90
122 123 4.074526 GGACGGCTGCTCTGCTCA 62.075 66.667 0.00 0.00 0.00 4.26
123 124 4.828925 GGGACGGCTGCTCTGCTC 62.829 72.222 0.00 0.00 0.00 4.26
145 146 2.363925 AGGAGTACCTCGGCACCC 60.364 66.667 0.00 0.00 44.13 4.61
154 155 3.243468 GCTAGTTGATCGGAAGGAGTACC 60.243 52.174 0.00 0.00 0.00 3.34
155 156 3.380637 TGCTAGTTGATCGGAAGGAGTAC 59.619 47.826 0.00 0.00 0.00 2.73
156 157 3.628008 TGCTAGTTGATCGGAAGGAGTA 58.372 45.455 0.00 0.00 0.00 2.59
157 158 2.428890 CTGCTAGTTGATCGGAAGGAGT 59.571 50.000 0.00 0.00 0.00 3.85
158 159 2.223923 CCTGCTAGTTGATCGGAAGGAG 60.224 54.545 0.00 0.00 0.00 3.69
159 160 1.757118 CCTGCTAGTTGATCGGAAGGA 59.243 52.381 0.00 0.00 0.00 3.36
160 161 1.482593 ACCTGCTAGTTGATCGGAAGG 59.517 52.381 0.00 0.00 0.00 3.46
161 162 2.969628 ACCTGCTAGTTGATCGGAAG 57.030 50.000 0.00 0.00 0.00 3.46
175 176 4.379174 TCGGAAGAAGCAACCTGC 57.621 55.556 0.00 0.00 38.53 4.85
178 179 8.277370 TTGCTAATTGATCGGAAGAAGCAACC 62.277 42.308 12.92 0.00 45.85 3.77
179 180 5.391950 TTGCTAATTGATCGGAAGAAGCAAC 60.392 40.000 12.92 0.00 45.85 4.17
186 187 5.818136 TTTCCTTGCTAATTGATCGGAAG 57.182 39.130 0.00 0.00 31.48 3.46
187 188 5.710099 AGTTTTCCTTGCTAATTGATCGGAA 59.290 36.000 0.00 0.00 0.00 4.30
188 189 5.253330 AGTTTTCCTTGCTAATTGATCGGA 58.747 37.500 0.00 0.00 0.00 4.55
189 190 5.567138 AGTTTTCCTTGCTAATTGATCGG 57.433 39.130 0.00 0.00 0.00 4.18
190 191 9.226345 GATTAAGTTTTCCTTGCTAATTGATCG 57.774 33.333 0.00 0.00 34.46 3.69
198 199 9.912634 CAGAAATTGATTAAGTTTTCCTTGCTA 57.087 29.630 0.00 0.00 34.46 3.49
199 200 8.424133 ACAGAAATTGATTAAGTTTTCCTTGCT 58.576 29.630 0.00 0.00 34.46 3.91
200 201 8.593492 ACAGAAATTGATTAAGTTTTCCTTGC 57.407 30.769 0.00 0.00 34.46 4.01
212 213 9.529325 CCGTCAGATTACTACAGAAATTGATTA 57.471 33.333 0.00 0.00 0.00 1.75
213 214 8.041323 ACCGTCAGATTACTACAGAAATTGATT 58.959 33.333 0.00 0.00 0.00 2.57
214 215 7.492669 CACCGTCAGATTACTACAGAAATTGAT 59.507 37.037 0.00 0.00 0.00 2.57
215 216 6.811665 CACCGTCAGATTACTACAGAAATTGA 59.188 38.462 0.00 0.00 0.00 2.57
216 217 6.811665 TCACCGTCAGATTACTACAGAAATTG 59.188 38.462 0.00 0.00 0.00 2.32
217 218 6.931838 TCACCGTCAGATTACTACAGAAATT 58.068 36.000 0.00 0.00 0.00 1.82
218 219 6.525578 TCACCGTCAGATTACTACAGAAAT 57.474 37.500 0.00 0.00 0.00 2.17
219 220 5.970317 TCACCGTCAGATTACTACAGAAA 57.030 39.130 0.00 0.00 0.00 2.52
220 221 5.970317 TTCACCGTCAGATTACTACAGAA 57.030 39.130 0.00 0.00 0.00 3.02
221 222 5.475909 ACTTTCACCGTCAGATTACTACAGA 59.524 40.000 0.00 0.00 0.00 3.41
222 223 5.710984 ACTTTCACCGTCAGATTACTACAG 58.289 41.667 0.00 0.00 0.00 2.74
223 224 5.717078 ACTTTCACCGTCAGATTACTACA 57.283 39.130 0.00 0.00 0.00 2.74
224 225 6.154445 TGAACTTTCACCGTCAGATTACTAC 58.846 40.000 0.00 0.00 31.01 2.73
225 226 6.335471 TGAACTTTCACCGTCAGATTACTA 57.665 37.500 0.00 0.00 31.01 1.82
226 227 5.209818 TGAACTTTCACCGTCAGATTACT 57.790 39.130 0.00 0.00 31.01 2.24
227 228 5.917541 TTGAACTTTCACCGTCAGATTAC 57.082 39.130 0.00 0.00 36.83 1.89
228 229 6.227522 TGATTGAACTTTCACCGTCAGATTA 58.772 36.000 0.00 0.00 36.83 1.75
229 230 5.063204 TGATTGAACTTTCACCGTCAGATT 58.937 37.500 0.00 0.00 36.83 2.40
230 231 4.641396 TGATTGAACTTTCACCGTCAGAT 58.359 39.130 0.00 0.00 36.83 2.90
231 232 4.066646 TGATTGAACTTTCACCGTCAGA 57.933 40.909 0.00 0.00 36.83 3.27
232 233 4.811555 TTGATTGAACTTTCACCGTCAG 57.188 40.909 0.00 0.00 36.83 3.51
233 234 5.766150 AATTGATTGAACTTTCACCGTCA 57.234 34.783 0.00 0.00 36.83 4.35
234 235 6.205784 TGAAATTGATTGAACTTTCACCGTC 58.794 36.000 0.00 0.00 36.83 4.79
235 236 6.039270 TCTGAAATTGATTGAACTTTCACCGT 59.961 34.615 0.00 0.00 36.83 4.83
236 237 6.437928 TCTGAAATTGATTGAACTTTCACCG 58.562 36.000 0.00 0.00 36.83 4.94
237 238 7.428826 ACTCTGAAATTGATTGAACTTTCACC 58.571 34.615 0.00 0.00 36.83 4.02
238 239 8.862550 AACTCTGAAATTGATTGAACTTTCAC 57.137 30.769 0.00 0.00 36.83 3.18
239 240 9.520204 GAAACTCTGAAATTGATTGAACTTTCA 57.480 29.630 0.00 0.00 36.48 2.69
240 241 9.520204 TGAAACTCTGAAATTGATTGAACTTTC 57.480 29.630 0.00 0.00 0.00 2.62
243 244 9.688592 GAATGAAACTCTGAAATTGATTGAACT 57.311 29.630 0.00 0.00 0.00 3.01
244 245 9.467258 TGAATGAAACTCTGAAATTGATTGAAC 57.533 29.630 0.00 0.00 0.00 3.18
249 250 9.991906 ACAAATGAATGAAACTCTGAAATTGAT 57.008 25.926 0.00 0.00 0.00 2.57
250 251 9.820725 AACAAATGAATGAAACTCTGAAATTGA 57.179 25.926 0.00 0.00 0.00 2.57
284 285 8.871125 TCAGTAAGTCTCCATAGTCTTTTCTTT 58.129 33.333 0.00 0.00 33.82 2.52
285 286 8.423906 TCAGTAAGTCTCCATAGTCTTTTCTT 57.576 34.615 0.00 0.00 33.82 2.52
286 287 7.891183 TCTCAGTAAGTCTCCATAGTCTTTTCT 59.109 37.037 0.00 0.00 33.82 2.52
287 288 8.057536 TCTCAGTAAGTCTCCATAGTCTTTTC 57.942 38.462 0.00 0.00 33.82 2.29
288 289 8.602472 ATCTCAGTAAGTCTCCATAGTCTTTT 57.398 34.615 0.00 0.00 33.82 2.27
289 290 8.474025 CAATCTCAGTAAGTCTCCATAGTCTTT 58.526 37.037 0.00 0.00 33.82 2.52
290 291 7.836685 TCAATCTCAGTAAGTCTCCATAGTCTT 59.163 37.037 0.00 0.00 35.62 3.01
291 292 7.284489 GTCAATCTCAGTAAGTCTCCATAGTCT 59.716 40.741 0.00 0.00 0.00 3.24
292 293 7.422399 GTCAATCTCAGTAAGTCTCCATAGTC 58.578 42.308 0.00 0.00 0.00 2.59
293 294 6.038825 CGTCAATCTCAGTAAGTCTCCATAGT 59.961 42.308 0.00 0.00 0.00 2.12
294 295 6.261158 TCGTCAATCTCAGTAAGTCTCCATAG 59.739 42.308 0.00 0.00 0.00 2.23
295 296 6.120220 TCGTCAATCTCAGTAAGTCTCCATA 58.880 40.000 0.00 0.00 0.00 2.74
296 297 4.950475 TCGTCAATCTCAGTAAGTCTCCAT 59.050 41.667 0.00 0.00 0.00 3.41
297 298 4.332828 TCGTCAATCTCAGTAAGTCTCCA 58.667 43.478 0.00 0.00 0.00 3.86
298 299 4.966965 TCGTCAATCTCAGTAAGTCTCC 57.033 45.455 0.00 0.00 0.00 3.71
299 300 5.284188 CGTTTCGTCAATCTCAGTAAGTCTC 59.716 44.000 0.00 0.00 0.00 3.36
300 301 5.048921 TCGTTTCGTCAATCTCAGTAAGTCT 60.049 40.000 0.00 0.00 0.00 3.24
301 302 5.152097 TCGTTTCGTCAATCTCAGTAAGTC 58.848 41.667 0.00 0.00 0.00 3.01
302 303 5.117355 TCGTTTCGTCAATCTCAGTAAGT 57.883 39.130 0.00 0.00 0.00 2.24
303 304 4.030753 GCTCGTTTCGTCAATCTCAGTAAG 59.969 45.833 0.00 0.00 0.00 2.34
304 305 3.918591 GCTCGTTTCGTCAATCTCAGTAA 59.081 43.478 0.00 0.00 0.00 2.24
305 306 3.057806 TGCTCGTTTCGTCAATCTCAGTA 60.058 43.478 0.00 0.00 0.00 2.74
306 307 2.288213 TGCTCGTTTCGTCAATCTCAGT 60.288 45.455 0.00 0.00 0.00 3.41
307 308 2.328473 TGCTCGTTTCGTCAATCTCAG 58.672 47.619 0.00 0.00 0.00 3.35
308 309 2.030274 TCTGCTCGTTTCGTCAATCTCA 60.030 45.455 0.00 0.00 0.00 3.27
309 310 2.596419 CTCTGCTCGTTTCGTCAATCTC 59.404 50.000 0.00 0.00 0.00 2.75
310 311 2.029828 ACTCTGCTCGTTTCGTCAATCT 60.030 45.455 0.00 0.00 0.00 2.40
311 312 2.329379 ACTCTGCTCGTTTCGTCAATC 58.671 47.619 0.00 0.00 0.00 2.67
312 313 2.440539 ACTCTGCTCGTTTCGTCAAT 57.559 45.000 0.00 0.00 0.00 2.57
313 314 2.606308 GGTACTCTGCTCGTTTCGTCAA 60.606 50.000 0.00 0.00 0.00 3.18
314 315 1.068748 GGTACTCTGCTCGTTTCGTCA 60.069 52.381 0.00 0.00 0.00 4.35
315 316 1.068748 TGGTACTCTGCTCGTTTCGTC 60.069 52.381 0.00 0.00 0.00 4.20
316 317 0.956633 TGGTACTCTGCTCGTTTCGT 59.043 50.000 0.00 0.00 0.00 3.85
317 318 1.068472 ACTGGTACTCTGCTCGTTTCG 60.068 52.381 0.00 0.00 0.00 3.46
318 319 2.597520 GACTGGTACTCTGCTCGTTTC 58.402 52.381 0.00 0.00 0.00 2.78
319 320 1.272769 GGACTGGTACTCTGCTCGTTT 59.727 52.381 0.00 0.00 0.00 3.60
320 321 0.889306 GGACTGGTACTCTGCTCGTT 59.111 55.000 0.00 0.00 0.00 3.85
321 322 0.966370 GGGACTGGTACTCTGCTCGT 60.966 60.000 0.00 0.00 0.00 4.18
322 323 0.965866 TGGGACTGGTACTCTGCTCG 60.966 60.000 0.00 0.00 0.00 5.03
323 324 0.820871 CTGGGACTGGTACTCTGCTC 59.179 60.000 0.00 0.00 0.00 4.26
324 325 1.261238 GCTGGGACTGGTACTCTGCT 61.261 60.000 0.00 0.00 0.00 4.24
325 326 1.219393 GCTGGGACTGGTACTCTGC 59.781 63.158 0.00 0.00 0.00 4.26
326 327 1.901085 GGCTGGGACTGGTACTCTG 59.099 63.158 0.00 0.00 0.00 3.35
327 328 1.682684 CGGCTGGGACTGGTACTCT 60.683 63.158 0.00 0.00 0.00 3.24
328 329 2.722201 CCGGCTGGGACTGGTACTC 61.722 68.421 2.57 0.00 38.47 2.59
329 330 2.683933 CCGGCTGGGACTGGTACT 60.684 66.667 2.57 0.00 38.47 2.73
330 331 4.468689 GCCGGCTGGGACTGGTAC 62.469 72.222 22.15 0.00 38.45 3.34
352 353 4.179579 GTGCGCGGAAGGCAATCC 62.180 66.667 8.83 0.00 42.92 3.01
353 354 4.179579 GGTGCGCGGAAGGCAATC 62.180 66.667 8.83 0.00 42.92 2.67
354 355 4.722700 AGGTGCGCGGAAGGCAAT 62.723 61.111 8.83 0.00 42.92 3.56
355 356 4.947147 AAGGTGCGCGGAAGGCAA 62.947 61.111 8.83 0.00 42.92 4.52
356 357 4.947147 AAAGGTGCGCGGAAGGCA 62.947 61.111 8.83 0.00 43.84 4.75
357 358 3.207547 AAAAAGGTGCGCGGAAGGC 62.208 57.895 8.83 0.00 38.69 4.35
358 359 3.039134 AAAAAGGTGCGCGGAAGG 58.961 55.556 8.83 0.00 0.00 3.46
396 397 4.457496 ATGCAGCCCAGTCCGACG 62.457 66.667 0.00 0.00 0.00 5.12
411 412 1.334869 GCTCAGAAATAACGGCCCATG 59.665 52.381 0.00 0.00 0.00 3.66
415 416 0.931005 CTCGCTCAGAAATAACGGCC 59.069 55.000 0.00 0.00 0.00 6.13
442 443 2.176273 CATGGACTACAGCCTGCGC 61.176 63.158 0.00 0.00 0.00 6.09
463 464 2.164827 TCGTGTACACACAGACACAAGT 59.835 45.455 24.98 0.00 46.75 3.16
471 472 0.386858 CTCCCGTCGTGTACACACAG 60.387 60.000 24.98 14.28 46.75 3.66
478 479 1.735386 CTCTTCTCTCCCGTCGTGTA 58.265 55.000 0.00 0.00 0.00 2.90
481 482 2.400158 CGCTCTTCTCTCCCGTCGT 61.400 63.158 0.00 0.00 0.00 4.34
485 486 2.202676 GTGCGCTCTTCTCTCCCG 60.203 66.667 9.73 0.00 0.00 5.14
486 487 2.185608 GGTGCGCTCTTCTCTCCC 59.814 66.667 9.73 0.00 0.00 4.30
489 490 1.181741 TGTGAGGTGCGCTCTTCTCT 61.182 55.000 20.14 4.58 0.00 3.10
490 491 0.319900 TTGTGAGGTGCGCTCTTCTC 60.320 55.000 20.14 17.14 0.00 2.87
491 492 0.322975 ATTGTGAGGTGCGCTCTTCT 59.677 50.000 20.14 5.63 0.00 2.85
492 493 0.445436 CATTGTGAGGTGCGCTCTTC 59.555 55.000 13.94 13.94 0.00 2.87
522 529 4.893601 TGCACCGTTCGTTGGCGA 62.894 61.111 0.00 0.00 46.36 5.54
523 530 4.368808 CTGCACCGTTCGTTGGCG 62.369 66.667 0.00 0.00 39.92 5.69
524 531 4.025401 CCTGCACCGTTCGTTGGC 62.025 66.667 0.00 0.00 0.00 4.52
525 532 2.280524 TCCTGCACCGTTCGTTGG 60.281 61.111 0.00 0.00 0.00 3.77
526 533 2.604174 GGTCCTGCACCGTTCGTTG 61.604 63.158 0.00 0.00 34.56 4.10
527 534 2.280592 GGTCCTGCACCGTTCGTT 60.281 61.111 0.00 0.00 34.56 3.85
654 661 2.681778 CTCCTCTGTGGGCCGTCT 60.682 66.667 0.00 0.00 36.20 4.18
663 670 2.653702 GAGCGCACACTCCTCTGT 59.346 61.111 11.47 0.00 0.00 3.41
664 671 2.505777 CGAGCGCACACTCCTCTG 60.506 66.667 11.47 0.00 32.79 3.35
677 684 3.064324 ATGTTTGCAGCCCCGAGC 61.064 61.111 0.00 0.00 44.25 5.03
679 686 0.958382 GTACATGTTTGCAGCCCCGA 60.958 55.000 2.30 0.00 0.00 5.14
680 687 1.240641 TGTACATGTTTGCAGCCCCG 61.241 55.000 2.30 0.00 0.00 5.73
720 727 8.712363 GCCAAGATTTTTGTAGATTTTCTTTCC 58.288 33.333 0.00 0.00 0.00 3.13
913 928 2.590007 AGGAGCGATTGATGCGGC 60.590 61.111 0.00 0.00 37.44 6.53
935 950 2.709475 CGCGGCCTAGATTTGCAC 59.291 61.111 0.00 0.00 0.00 4.57
951 966 1.195222 GCAGATTTTTGCTTTTGGCCG 59.805 47.619 0.00 0.00 40.89 6.13
952 967 1.536766 GGCAGATTTTTGCTTTTGGCC 59.463 47.619 0.00 0.00 43.57 5.36
953 968 1.195222 CGGCAGATTTTTGCTTTTGGC 59.805 47.619 0.00 0.00 43.57 4.52
954 969 2.753296 TCGGCAGATTTTTGCTTTTGG 58.247 42.857 0.00 0.00 43.57 3.28
955 970 4.996062 ATTCGGCAGATTTTTGCTTTTG 57.004 36.364 0.00 0.00 43.57 2.44
956 971 4.452114 GGAATTCGGCAGATTTTTGCTTTT 59.548 37.500 0.00 0.00 43.57 2.27
957 972 3.996363 GGAATTCGGCAGATTTTTGCTTT 59.004 39.130 0.00 0.00 43.57 3.51
958 973 3.588955 GGAATTCGGCAGATTTTTGCTT 58.411 40.909 0.00 0.00 43.57 3.91
959 974 2.094026 GGGAATTCGGCAGATTTTTGCT 60.094 45.455 0.00 0.00 43.57 3.91
960 975 2.270923 GGGAATTCGGCAGATTTTTGC 58.729 47.619 0.00 0.00 43.34 3.68
961 976 2.233431 TGGGGAATTCGGCAGATTTTTG 59.767 45.455 0.00 0.00 0.00 2.44
962 977 2.534990 TGGGGAATTCGGCAGATTTTT 58.465 42.857 0.00 0.00 0.00 1.94
963 978 2.230130 TGGGGAATTCGGCAGATTTT 57.770 45.000 0.00 0.00 0.00 1.82
964 979 2.230130 TTGGGGAATTCGGCAGATTT 57.770 45.000 0.00 0.00 0.00 2.17
965 980 2.230130 TTTGGGGAATTCGGCAGATT 57.770 45.000 0.00 0.00 0.00 2.40
966 981 2.310538 GATTTGGGGAATTCGGCAGAT 58.689 47.619 0.00 0.00 0.00 2.90
967 982 1.684869 GGATTTGGGGAATTCGGCAGA 60.685 52.381 0.00 0.00 0.00 4.26
968 983 0.746659 GGATTTGGGGAATTCGGCAG 59.253 55.000 0.00 0.00 0.00 4.85
969 984 0.334676 AGGATTTGGGGAATTCGGCA 59.665 50.000 0.00 0.00 0.00 5.69
970 985 1.032794 GAGGATTTGGGGAATTCGGC 58.967 55.000 0.00 0.00 0.00 5.54
971 986 2.689983 CAAGAGGATTTGGGGAATTCGG 59.310 50.000 0.00 0.00 0.00 4.30
972 987 3.356290 ACAAGAGGATTTGGGGAATTCG 58.644 45.455 0.00 0.00 32.32 3.34
973 988 4.344104 TGACAAGAGGATTTGGGGAATTC 58.656 43.478 0.00 0.00 32.32 2.17
974 989 4.402616 TGACAAGAGGATTTGGGGAATT 57.597 40.909 0.00 0.00 32.32 2.17
975 990 4.402616 TTGACAAGAGGATTTGGGGAAT 57.597 40.909 0.00 0.00 32.32 3.01
976 991 3.893753 TTGACAAGAGGATTTGGGGAA 57.106 42.857 0.00 0.00 32.32 3.97
977 992 3.309121 GGATTGACAAGAGGATTTGGGGA 60.309 47.826 0.00 0.00 32.32 4.81
978 993 3.026694 GGATTGACAAGAGGATTTGGGG 58.973 50.000 0.00 0.00 32.32 4.96
979 994 3.700538 TGGATTGACAAGAGGATTTGGG 58.299 45.455 0.00 0.00 32.32 4.12
980 995 4.098960 CCATGGATTGACAAGAGGATTTGG 59.901 45.833 5.56 0.00 32.32 3.28
981 996 4.951715 TCCATGGATTGACAAGAGGATTTG 59.048 41.667 11.44 0.00 0.00 2.32
982 997 5.197224 TCCATGGATTGACAAGAGGATTT 57.803 39.130 11.44 0.00 0.00 2.17
983 998 4.868172 TCCATGGATTGACAAGAGGATT 57.132 40.909 11.44 0.00 0.00 3.01
984 999 6.504634 AGATATCCATGGATTGACAAGAGGAT 59.495 38.462 31.70 15.01 35.84 3.24
985 1000 5.848369 AGATATCCATGGATTGACAAGAGGA 59.152 40.000 31.70 10.65 36.17 3.71
995 1010 3.892031 ACTGGGGAGATATCCATGGATT 58.108 45.455 31.70 18.97 36.17 3.01
1012 1027 1.676014 GGAGTGACGGATGGAAACTGG 60.676 57.143 0.00 0.00 0.00 4.00
1028 1043 0.986019 TGGGCCGATTATGGTGGAGT 60.986 55.000 0.00 0.00 0.00 3.85
1409 1442 1.424493 GCTCATGAAGGCTTCGACCG 61.424 60.000 21.42 11.45 33.69 4.79
1469 1502 3.760151 CTGATGATGGAGAAAGGCAACAA 59.240 43.478 0.00 0.00 41.41 2.83
1473 1506 2.356432 CCACTGATGATGGAGAAAGGCA 60.356 50.000 0.00 0.00 39.87 4.75
1479 1512 3.662078 AGATTCCCACTGATGATGGAGA 58.338 45.455 0.00 0.00 39.87 3.71
1488 1521 3.099905 CTGGTCACTAGATTCCCACTGA 58.900 50.000 0.00 0.00 0.00 3.41
1541 1574 2.670414 CTCTTCCATGTCTTTGTCTCGC 59.330 50.000 0.00 0.00 0.00 5.03
1752 1788 1.123077 TCCTATCGGTGATGCAAGCT 58.877 50.000 0.00 0.00 0.00 3.74
1845 1881 8.854979 TGCAATTAGGTTCATCGAATTTTATG 57.145 30.769 0.00 0.00 0.00 1.90
1882 1918 1.607178 TGGTGGCCTTCCATGCTTG 60.607 57.895 14.58 0.00 45.62 4.01
1948 1984 3.005554 CCGAGATTTCAGCAACATCAGT 58.994 45.455 0.00 0.00 0.00 3.41
2200 2236 1.553308 GGACAGTACATCGTAACGGC 58.447 55.000 0.00 0.00 0.00 5.68
2286 2324 1.473677 TGCTGCTAAATCACATGGCAC 59.526 47.619 0.00 0.00 0.00 5.01
2365 2431 2.286294 GCACACACAAGAACTGACAGAG 59.714 50.000 10.08 0.00 0.00 3.35
2618 2689 9.384682 GCACCAAAATTCTGATTTTTGTTAATG 57.615 29.630 24.56 19.50 42.14 1.90
2872 2945 2.568546 TCTTATTGGAGAGGGCCTCA 57.431 50.000 33.86 15.05 43.76 3.86
2912 2985 6.629128 TGGGAAATAAATGCACATACACTTG 58.371 36.000 0.00 0.00 0.00 3.16
2917 2990 8.947055 AAAAGATGGGAAATAAATGCACATAC 57.053 30.769 0.00 0.00 0.00 2.39
3072 3147 3.835478 TCTTCTTCCTCCTCCTCTTCA 57.165 47.619 0.00 0.00 0.00 3.02
3098 3173 1.091771 CAATCCGCAGCCTGTACCTG 61.092 60.000 0.00 0.00 0.00 4.00
3099 3174 1.221840 CAATCCGCAGCCTGTACCT 59.778 57.895 0.00 0.00 0.00 3.08
3100 3175 2.472909 GCAATCCGCAGCCTGTACC 61.473 63.158 0.00 0.00 41.79 3.34
3101 3176 1.450312 AGCAATCCGCAGCCTGTAC 60.450 57.895 0.00 0.00 46.13 2.90
3102 3177 1.450134 CAGCAATCCGCAGCCTGTA 60.450 57.895 0.00 0.00 46.13 2.74
3105 3180 3.574074 AACCAGCAATCCGCAGCCT 62.574 57.895 0.00 0.00 46.13 4.58
3130 3205 5.568624 GCCAACAAAATACAGCAAATAGGGT 60.569 40.000 0.00 0.00 0.00 4.34
3197 3272 8.758829 TGAACATACTGACTATTACATTCCAGT 58.241 33.333 0.00 0.00 38.30 4.00
3222 3297 0.811616 GCTTCATCAGTACGGCCCTG 60.812 60.000 0.00 0.00 0.00 4.45
3223 3298 0.978146 AGCTTCATCAGTACGGCCCT 60.978 55.000 0.00 0.00 0.00 5.19
3224 3299 0.750850 TAGCTTCATCAGTACGGCCC 59.249 55.000 0.00 0.00 0.00 5.80
3225 3300 2.224066 ACATAGCTTCATCAGTACGGCC 60.224 50.000 0.00 0.00 0.00 6.13
3226 3301 3.099267 ACATAGCTTCATCAGTACGGC 57.901 47.619 0.00 0.00 0.00 5.68
3227 3302 6.260870 AGATACATAGCTTCATCAGTACGG 57.739 41.667 0.00 0.00 0.00 4.02
3228 3303 7.414651 CCCTAGATACATAGCTTCATCAGTACG 60.415 44.444 0.00 0.00 0.00 3.67
3229 3304 7.394923 ACCCTAGATACATAGCTTCATCAGTAC 59.605 40.741 0.00 0.00 0.00 2.73
3230 3305 7.471041 ACCCTAGATACATAGCTTCATCAGTA 58.529 38.462 0.00 0.00 0.00 2.74
3387 3463 3.515316 CTGGCGGTCGAGTGGTTGT 62.515 63.158 0.00 0.00 0.00 3.32
3400 3476 0.830648 TGACTTTAGATCCCCTGGCG 59.169 55.000 0.00 0.00 0.00 5.69
3407 3483 1.536284 CCGCGGAGTGACTTTAGATCC 60.536 57.143 24.07 0.00 43.07 3.36
3426 3502 0.603439 TAAAGACCGACCGTTTGCCC 60.603 55.000 0.00 0.00 0.00 5.36
3496 3572 5.541101 GGTTTAAGGTTCATTAAGGTTGGGT 59.459 40.000 0.00 0.00 0.00 4.51
3510 3586 4.993028 TCAGTAATGCAGGGTTTAAGGTT 58.007 39.130 0.00 0.00 0.00 3.50
3535 3612 4.704103 TCGCCAGCCCTCTCCTGT 62.704 66.667 0.00 0.00 0.00 4.00
3579 3658 1.299976 GGGTGCGAACCCTTCATCT 59.700 57.895 25.95 0.00 46.39 2.90
3670 3750 1.053424 TGTACGAGTTCAGGCCCTTT 58.947 50.000 0.00 0.00 0.00 3.11
3764 3847 1.429463 GCCAACTGTCGTGGTTCTAG 58.571 55.000 0.84 0.00 0.00 2.43
3810 3893 1.968493 TCGCAACTTCTCCAACTAGGT 59.032 47.619 0.00 0.00 39.02 3.08
3844 3928 1.202065 CCGCACGAAACCATGATCAAG 60.202 52.381 0.00 0.00 0.00 3.02
3925 4009 4.722700 GCCTCCCGAAGCCAAGCA 62.723 66.667 0.00 0.00 0.00 3.91
3936 4020 2.022240 GATGTCGAGTGGAGCCTCCC 62.022 65.000 8.62 0.00 35.03 4.30
4086 4170 2.744768 AAGTCTCGACCGACCGGAGT 62.745 60.000 16.07 1.39 38.96 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.