Multiple sequence alignment - TraesCS3A01G057100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G057100 chr3A 100.000 3336 0 0 1 3336 32998736 33002071 0.000000e+00 6161.0
1 TraesCS3A01G057100 chr3A 97.647 255 6 0 3082 3336 34378367 34378621 3.950000e-119 438.0
2 TraesCS3A01G057100 chr3A 97.647 255 6 0 3082 3336 337475892 337476146 3.950000e-119 438.0
3 TraesCS3A01G057100 chr3A 85.194 412 61 0 1702 2113 474811341 474810930 1.110000e-114 424.0
4 TraesCS3A01G057100 chr3A 86.441 295 25 3 929 1214 33142170 33142458 3.230000e-80 309.0
5 TraesCS3A01G057100 chr3A 88.393 112 9 1 796 907 33142076 33142183 7.510000e-27 132.0
6 TraesCS3A01G057100 chr3D 94.867 2182 69 11 929 3082 23743942 23746108 0.000000e+00 3369.0
7 TraesCS3A01G057100 chr3D 90.710 732 45 9 977 1699 23746315 23747032 0.000000e+00 953.0
8 TraesCS3A01G057100 chr3D 85.922 412 58 0 1702 2113 355795405 355794994 1.100000e-119 440.0
9 TraesCS3A01G057100 chr3D 93.972 282 12 5 132 409 23743376 23743656 3.980000e-114 422.0
10 TraesCS3A01G057100 chr3D 90.491 326 14 7 586 907 23743643 23743955 6.660000e-112 414.0
11 TraesCS3A01G057100 chr3D 94.118 187 10 1 408 593 25294122 25293936 1.960000e-72 283.0
12 TraesCS3A01G057100 chr3D 81.197 234 26 10 156 384 380977358 380977578 4.420000e-39 172.0
13 TraesCS3A01G057100 chr3B 96.603 1354 34 8 1042 2391 41857033 41858378 0.000000e+00 2235.0
14 TraesCS3A01G057100 chr3B 85.922 412 58 0 1702 2113 456981115 456980704 1.100000e-119 440.0
15 TraesCS3A01G057100 chr3B 95.437 263 11 1 2820 3082 41860199 41860460 5.150000e-113 418.0
16 TraesCS3A01G057100 chr3B 92.708 288 18 3 119 404 41856359 41856645 2.390000e-111 412.0
17 TraesCS3A01G057100 chr3B 89.939 328 18 5 586 907 41856636 41856954 3.100000e-110 409.0
18 TraesCS3A01G057100 chr3B 94.565 184 8 1 410 591 666175932 666176115 1.960000e-72 283.0
19 TraesCS3A01G057100 chr3B 96.479 142 5 0 2378 2519 41860050 41860191 5.560000e-58 235.0
20 TraesCS3A01G057100 chr3B 89.524 105 0 3 929 1023 41856941 41857044 4.520000e-24 122.0
21 TraesCS3A01G057100 chr2B 79.227 1449 207 43 968 2344 144034287 144035713 0.000000e+00 922.0
22 TraesCS3A01G057100 chr2B 85.294 408 58 2 1708 2114 144077810 144077404 1.430000e-113 420.0
23 TraesCS3A01G057100 chr2B 95.082 183 8 1 410 591 389170364 389170546 1.510000e-73 287.0
24 TraesCS3A01G057100 chr2B 85.185 162 17 5 1127 1286 144021268 144021424 3.440000e-35 159.0
25 TraesCS3A01G057100 chr2B 84.375 160 19 6 158 313 682261152 682261309 5.760000e-33 152.0
26 TraesCS3A01G057100 chr2D 81.515 990 159 16 1371 2345 92889070 92890050 0.000000e+00 793.0
27 TraesCS3A01G057100 chr2D 81.856 485 87 1 1861 2344 92863337 92863821 1.110000e-109 407.0
28 TraesCS3A01G057100 chr2D 89.189 222 24 0 1708 1929 92892243 92892464 9.120000e-71 278.0
29 TraesCS3A01G057100 chr2D 79.755 326 53 8 973 1289 92882100 92882421 1.200000e-54 224.0
30 TraesCS3A01G057100 chr2D 89.677 155 16 0 1709 1863 92863100 92863254 7.300000e-47 198.0
31 TraesCS3A01G057100 chr2D 83.408 223 26 10 158 372 570054098 570054317 2.630000e-46 196.0
32 TraesCS3A01G057100 chr2D 82.627 236 22 12 156 384 523160482 523160705 1.220000e-44 191.0
33 TraesCS3A01G057100 chr2D 84.940 166 18 5 1123 1286 92736699 92736859 9.580000e-36 161.0
34 TraesCS3A01G057100 chr7A 97.287 258 6 1 3080 3336 157940106 157939849 1.420000e-118 436.0
35 TraesCS3A01G057100 chr2A 97.647 255 5 1 3082 3336 720158471 720158724 1.420000e-118 436.0
36 TraesCS3A01G057100 chr2A 97.638 254 6 0 3083 3336 763469287 763469034 1.420000e-118 436.0
37 TraesCS3A01G057100 chr2A 81.908 304 38 12 71 369 164607175 164606884 1.200000e-59 241.0
38 TraesCS3A01G057100 chr1A 97.638 254 6 0 3083 3336 394807176 394807429 1.420000e-118 436.0
39 TraesCS3A01G057100 chr1A 97.266 256 7 0 3081 3336 326117340 326117085 5.110000e-118 435.0
40 TraesCS3A01G057100 chr5A 96.552 261 8 1 3076 3336 28855359 28855100 6.610000e-117 431.0
41 TraesCS3A01G057100 chr6A 94.245 278 12 3 3059 3336 171418997 171418724 3.980000e-114 422.0
42 TraesCS3A01G057100 chr7D 93.333 195 11 2 408 600 37518190 37518384 1.510000e-73 287.0
43 TraesCS3A01G057100 chr6B 95.055 182 9 0 410 591 255856708 255856527 1.510000e-73 287.0
44 TraesCS3A01G057100 chr6B 95.055 182 8 1 411 591 367048544 367048363 5.450000e-73 285.0
45 TraesCS3A01G057100 chr5D 94.536 183 9 1 410 591 236010340 236010158 7.050000e-72 281.0
46 TraesCS3A01G057100 chr5D 83.260 227 21 11 156 377 20981726 20981940 3.400000e-45 193.0
47 TraesCS3A01G057100 chr5B 95.000 180 8 1 410 589 258191886 258192064 7.050000e-72 281.0
48 TraesCS3A01G057100 chr4B 94.536 183 9 1 410 591 175243498 175243680 7.050000e-72 281.0
49 TraesCS3A01G057100 chr1D 77.027 148 24 8 2727 2869 199273725 199273867 3.570000e-10 76.8
50 TraesCS3A01G057100 chr1D 75.510 147 28 7 2727 2869 109716555 109716697 7.730000e-07 65.8
51 TraesCS3A01G057100 chr1D 88.889 45 2 3 2885 2927 370618293 370618250 6.000000e-03 52.8
52 TraesCS3A01G057100 chr4A 90.000 50 5 0 2727 2776 541369160 541369111 7.730000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G057100 chr3A 32998736 33002071 3335 False 6161.0 6161 100.000000 1 3336 1 chr3A.!!$F1 3335
1 TraesCS3A01G057100 chr3D 23743376 23747032 3656 False 1289.5 3369 92.510000 132 3082 4 chr3D.!!$F2 2950
2 TraesCS3A01G057100 chr3B 41856359 41860460 4101 False 638.5 2235 93.448333 119 3082 6 chr3B.!!$F2 2963
3 TraesCS3A01G057100 chr2B 144034287 144035713 1426 False 922.0 922 79.227000 968 2344 1 chr2B.!!$F2 1376
4 TraesCS3A01G057100 chr2D 92889070 92892464 3394 False 535.5 793 85.352000 1371 2345 2 chr2D.!!$F6 974
5 TraesCS3A01G057100 chr2D 92863100 92863821 721 False 302.5 407 85.766500 1709 2344 2 chr2D.!!$F5 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 913 0.179062 GCCAAGATCTGCCTCGTCAT 60.179 55.0 0.0 0.0 0.00 3.06 F
1032 1056 0.241213 CGTCGTCTCTGCCTCAGAAA 59.759 55.0 0.0 0.0 40.18 2.52 F
1037 1061 0.244994 TCTCTGCCTCAGAAACTCGC 59.755 55.0 0.0 0.0 40.18 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 2075 0.953471 GCACGTACATGGTCTTGGCA 60.953 55.000 0.0 0.0 0.00 4.92 R
2167 2363 1.597461 CCTCCCAGGAACGAAGACC 59.403 63.158 0.0 0.0 37.67 3.85 R
2857 5363 3.020984 GAGGAAGTCCAGGTCTACTCTG 58.979 54.545 0.0 0.0 38.89 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 7.806149 ATTTTTAAAAATTAGCCGGAGAACG 57.194 32.000 18.40 0.00 37.56 3.95
77 78 2.913777 AAAAATTAGCCGGAGAACGC 57.086 45.000 5.05 0.00 42.52 4.84
78 79 2.109425 AAAATTAGCCGGAGAACGCT 57.891 45.000 5.05 0.00 42.52 5.07
79 80 1.653151 AAATTAGCCGGAGAACGCTC 58.347 50.000 5.05 0.00 42.52 5.03
87 88 4.116878 GAGAACGCTCCTCATGGC 57.883 61.111 0.00 0.00 35.01 4.40
88 89 1.219124 GAGAACGCTCCTCATGGCA 59.781 57.895 0.00 0.00 35.01 4.92
89 90 0.809241 GAGAACGCTCCTCATGGCAG 60.809 60.000 0.00 0.00 35.01 4.85
90 91 2.437359 AACGCTCCTCATGGCAGC 60.437 61.111 0.00 0.00 34.99 5.25
91 92 3.258228 AACGCTCCTCATGGCAGCA 62.258 57.895 10.74 0.00 36.77 4.41
92 93 3.200593 CGCTCCTCATGGCAGCAC 61.201 66.667 10.74 0.00 36.77 4.40
93 94 2.045634 GCTCCTCATGGCAGCACA 60.046 61.111 0.00 0.00 36.87 4.57
94 95 1.453379 GCTCCTCATGGCAGCACAT 60.453 57.895 0.00 0.00 36.87 3.21
96 97 1.077285 TCCTCATGGCAGCACATGG 60.077 57.895 18.43 11.74 46.33 3.66
97 98 2.125326 CCTCATGGCAGCACATGGG 61.125 63.158 18.43 16.27 46.54 4.00
98 99 2.043752 TCATGGCAGCACATGGGG 60.044 61.111 18.43 0.00 46.33 4.96
99 100 3.151710 CATGGCAGCACATGGGGG 61.152 66.667 13.38 0.00 43.44 5.40
113 114 3.798511 GGGGGAGGGTGTAGCAGC 61.799 72.222 0.00 0.00 0.00 5.25
114 115 3.009115 GGGGAGGGTGTAGCAGCA 61.009 66.667 0.00 0.00 33.07 4.41
115 116 2.269241 GGGAGGGTGTAGCAGCAC 59.731 66.667 0.00 2.53 38.56 4.40
130 131 2.756400 CACCTGGGGCTGTAGCAA 59.244 61.111 6.18 0.00 44.36 3.91
142 143 3.623510 GGCTGTAGCAATTTCAGAGGTAC 59.376 47.826 6.18 0.00 44.36 3.34
150 151 4.870991 GCAATTTCAGAGGTACAGGTAGAC 59.129 45.833 0.00 0.00 0.00 2.59
158 159 3.191273 AGGTACAGGTAGACAGAGAGGA 58.809 50.000 0.00 0.00 0.00 3.71
255 260 3.837731 AGAAAAGAGGGAGGAAGAGTGAG 59.162 47.826 0.00 0.00 0.00 3.51
302 307 6.715344 AAGAGAAAAATGCGTCGTACAATA 57.285 33.333 0.00 0.00 0.00 1.90
309 314 1.205179 TGCGTCGTACAATATGTGGGT 59.795 47.619 0.00 0.00 0.00 4.51
322 327 8.055279 ACAATATGTGGGTCAGAAAAATGTAG 57.945 34.615 0.00 0.00 0.00 2.74
355 361 1.866015 TCCTGGTCAATCGATCCAGT 58.134 50.000 23.09 0.00 44.92 4.00
403 409 1.202200 CGCTTGGTGAAAACGTTTCCA 60.202 47.619 15.01 14.51 0.00 3.53
404 410 2.190161 GCTTGGTGAAAACGTTTCCAC 58.810 47.619 20.74 20.74 0.00 4.02
405 411 2.416162 GCTTGGTGAAAACGTTTCCACA 60.416 45.455 28.05 18.48 0.00 4.17
406 412 3.736740 GCTTGGTGAAAACGTTTCCACAT 60.737 43.478 28.05 7.29 0.00 3.21
407 413 4.429108 CTTGGTGAAAACGTTTCCACATT 58.571 39.130 28.05 6.54 0.00 2.71
408 414 5.578005 TTGGTGAAAACGTTTCCACATTA 57.422 34.783 28.05 13.44 0.00 1.90
409 415 4.922719 TGGTGAAAACGTTTCCACATTAC 58.077 39.130 28.05 13.63 0.00 1.89
410 416 4.398358 TGGTGAAAACGTTTCCACATTACA 59.602 37.500 28.05 15.84 0.00 2.41
411 417 4.973663 GGTGAAAACGTTTCCACATTACAG 59.026 41.667 28.05 0.00 0.00 2.74
412 418 5.449451 GGTGAAAACGTTTCCACATTACAGT 60.449 40.000 28.05 3.05 0.00 3.55
413 419 6.031471 GTGAAAACGTTTCCACATTACAGTT 58.969 36.000 23.41 0.00 0.00 3.16
414 420 6.528774 GTGAAAACGTTTCCACATTACAGTTT 59.471 34.615 23.41 0.00 32.78 2.66
415 421 6.528423 TGAAAACGTTTCCACATTACAGTTTG 59.472 34.615 15.01 0.00 31.96 2.93
416 422 5.570234 AACGTTTCCACATTACAGTTTGT 57.430 34.783 0.00 0.00 0.00 2.83
417 423 5.164606 ACGTTTCCACATTACAGTTTGTC 57.835 39.130 0.00 0.00 0.00 3.18
418 424 4.879545 ACGTTTCCACATTACAGTTTGTCT 59.120 37.500 0.00 0.00 0.00 3.41
419 425 6.050432 ACGTTTCCACATTACAGTTTGTCTA 58.950 36.000 0.00 0.00 0.00 2.59
420 426 6.539464 ACGTTTCCACATTACAGTTTGTCTAA 59.461 34.615 0.00 0.00 0.00 2.10
421 427 7.227910 ACGTTTCCACATTACAGTTTGTCTAAT 59.772 33.333 0.00 0.00 0.00 1.73
422 428 8.073768 CGTTTCCACATTACAGTTTGTCTAATT 58.926 33.333 0.00 0.00 0.00 1.40
423 429 9.394477 GTTTCCACATTACAGTTTGTCTAATTC 57.606 33.333 0.00 0.00 0.00 2.17
424 430 8.684386 TTCCACATTACAGTTTGTCTAATTCA 57.316 30.769 0.00 0.00 0.00 2.57
425 431 8.094798 TCCACATTACAGTTTGTCTAATTCAC 57.905 34.615 0.00 0.00 0.00 3.18
426 432 7.717436 TCCACATTACAGTTTGTCTAATTCACA 59.283 33.333 0.00 0.00 0.00 3.58
427 433 8.514594 CCACATTACAGTTTGTCTAATTCACAT 58.485 33.333 0.00 0.00 0.00 3.21
428 434 9.546909 CACATTACAGTTTGTCTAATTCACATC 57.453 33.333 0.00 0.00 0.00 3.06
429 435 9.507329 ACATTACAGTTTGTCTAATTCACATCT 57.493 29.630 0.00 0.00 0.00 2.90
463 469 9.847224 TTTTAAGGATATCACATCTAAACTCCC 57.153 33.333 4.83 0.00 0.00 4.30
464 470 8.561536 TTAAGGATATCACATCTAAACTCCCA 57.438 34.615 4.83 0.00 0.00 4.37
465 471 6.426646 AGGATATCACATCTAAACTCCCAC 57.573 41.667 4.83 0.00 0.00 4.61
466 472 5.905331 AGGATATCACATCTAAACTCCCACA 59.095 40.000 4.83 0.00 0.00 4.17
467 473 6.386927 AGGATATCACATCTAAACTCCCACAA 59.613 38.462 4.83 0.00 0.00 3.33
468 474 6.708054 GGATATCACATCTAAACTCCCACAAG 59.292 42.308 4.83 0.00 0.00 3.16
469 475 4.974645 TCACATCTAAACTCCCACAAGT 57.025 40.909 0.00 0.00 0.00 3.16
470 476 6.620877 ATCACATCTAAACTCCCACAAGTA 57.379 37.500 0.00 0.00 0.00 2.24
471 477 6.620877 TCACATCTAAACTCCCACAAGTAT 57.379 37.500 0.00 0.00 0.00 2.12
472 478 7.727578 TCACATCTAAACTCCCACAAGTATA 57.272 36.000 0.00 0.00 0.00 1.47
473 479 8.319057 TCACATCTAAACTCCCACAAGTATAT 57.681 34.615 0.00 0.00 0.00 0.86
474 480 9.429109 TCACATCTAAACTCCCACAAGTATATA 57.571 33.333 0.00 0.00 0.00 0.86
478 484 9.726438 ATCTAAACTCCCACAAGTATATAATGC 57.274 33.333 0.00 0.00 0.00 3.56
479 485 8.710239 TCTAAACTCCCACAAGTATATAATGCA 58.290 33.333 0.00 0.00 0.00 3.96
480 486 7.807977 AAACTCCCACAAGTATATAATGCAG 57.192 36.000 0.00 0.00 0.00 4.41
481 487 5.308825 ACTCCCACAAGTATATAATGCAGC 58.691 41.667 0.00 0.00 0.00 5.25
482 488 5.163205 ACTCCCACAAGTATATAATGCAGCA 60.163 40.000 0.00 0.00 0.00 4.41
483 489 5.689835 TCCCACAAGTATATAATGCAGCAA 58.310 37.500 0.00 0.00 0.00 3.91
484 490 5.530915 TCCCACAAGTATATAATGCAGCAAC 59.469 40.000 0.00 0.00 0.00 4.17
485 491 5.299028 CCCACAAGTATATAATGCAGCAACA 59.701 40.000 0.00 0.00 0.00 3.33
486 492 6.183360 CCCACAAGTATATAATGCAGCAACAA 60.183 38.462 0.00 0.00 0.00 2.83
487 493 6.914215 CCACAAGTATATAATGCAGCAACAAG 59.086 38.462 0.00 0.00 0.00 3.16
488 494 7.201723 CCACAAGTATATAATGCAGCAACAAGA 60.202 37.037 0.00 0.00 0.00 3.02
489 495 8.183536 CACAAGTATATAATGCAGCAACAAGAA 58.816 33.333 0.00 0.00 0.00 2.52
490 496 8.739039 ACAAGTATATAATGCAGCAACAAGAAA 58.261 29.630 0.00 0.00 0.00 2.52
491 497 9.013490 CAAGTATATAATGCAGCAACAAGAAAC 57.987 33.333 0.00 0.00 0.00 2.78
492 498 8.279970 AGTATATAATGCAGCAACAAGAAACA 57.720 30.769 0.00 0.00 0.00 2.83
493 499 8.739039 AGTATATAATGCAGCAACAAGAAACAA 58.261 29.630 0.00 0.00 0.00 2.83
494 500 9.352784 GTATATAATGCAGCAACAAGAAACAAA 57.647 29.630 0.00 0.00 0.00 2.83
495 501 8.830201 ATATAATGCAGCAACAAGAAACAAAA 57.170 26.923 0.00 0.00 0.00 2.44
496 502 5.876612 AATGCAGCAACAAGAAACAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
530 536 5.695851 AAAAATAGACCACAAGCAGAGTG 57.304 39.130 0.00 0.00 36.76 3.51
537 543 2.174363 CACAAGCAGAGTGGACATCA 57.826 50.000 0.00 0.00 33.43 3.07
538 544 2.497138 CACAAGCAGAGTGGACATCAA 58.503 47.619 0.00 0.00 33.43 2.57
539 545 3.079578 CACAAGCAGAGTGGACATCAAT 58.920 45.455 0.00 0.00 33.43 2.57
540 546 3.504906 CACAAGCAGAGTGGACATCAATT 59.495 43.478 0.00 0.00 33.43 2.32
541 547 4.022589 CACAAGCAGAGTGGACATCAATTT 60.023 41.667 0.00 0.00 33.43 1.82
542 548 5.181811 CACAAGCAGAGTGGACATCAATTTA 59.818 40.000 0.00 0.00 33.43 1.40
543 549 5.413833 ACAAGCAGAGTGGACATCAATTTAG 59.586 40.000 0.00 0.00 0.00 1.85
544 550 5.426689 AGCAGAGTGGACATCAATTTAGA 57.573 39.130 0.00 0.00 0.00 2.10
545 551 5.999044 AGCAGAGTGGACATCAATTTAGAT 58.001 37.500 0.00 0.00 0.00 1.98
586 592 6.951062 CATCTAGATGTGTCCTAGACAGAA 57.049 41.667 22.42 0.00 43.57 3.02
587 593 6.734137 CATCTAGATGTGTCCTAGACAGAAC 58.266 44.000 22.42 0.00 43.57 3.01
588 594 5.194432 TCTAGATGTGTCCTAGACAGAACC 58.806 45.833 0.00 0.00 43.57 3.62
589 595 4.054359 AGATGTGTCCTAGACAGAACCT 57.946 45.455 0.00 0.00 43.57 3.50
590 596 4.421131 AGATGTGTCCTAGACAGAACCTT 58.579 43.478 0.00 0.00 43.57 3.50
591 597 4.841246 AGATGTGTCCTAGACAGAACCTTT 59.159 41.667 0.00 0.00 43.57 3.11
592 598 4.602340 TGTGTCCTAGACAGAACCTTTC 57.398 45.455 0.00 0.00 43.57 2.62
643 649 7.880713 TGTTTTGGCTGACTTATCTACAATACA 59.119 33.333 0.00 0.00 30.49 2.29
655 661 1.355971 ACAATACATCCGTGACGTGC 58.644 50.000 3.64 0.00 0.00 5.34
679 688 5.526115 TGTTTGGTTTGTTTGACACGTAAA 58.474 33.333 0.00 0.00 0.00 2.01
692 701 4.105486 GACACGTAAAACCCGGTATACTC 58.895 47.826 0.00 0.00 0.00 2.59
693 702 3.763897 ACACGTAAAACCCGGTATACTCT 59.236 43.478 0.00 0.00 0.00 3.24
694 703 4.142381 ACACGTAAAACCCGGTATACTCTC 60.142 45.833 0.00 0.00 0.00 3.20
695 704 3.381590 ACGTAAAACCCGGTATACTCTCC 59.618 47.826 0.00 0.00 0.00 3.71
696 705 3.243535 CGTAAAACCCGGTATACTCTCCC 60.244 52.174 0.00 0.00 0.00 4.30
718 727 3.008485 CCTCCCCTAGGCATAAGTCAATC 59.992 52.174 2.05 0.00 38.97 2.67
868 882 5.125578 TGAATATGTTAGAGGCGCGAGATAT 59.874 40.000 12.10 0.00 0.00 1.63
869 883 6.317893 TGAATATGTTAGAGGCGCGAGATATA 59.682 38.462 12.10 0.00 0.00 0.86
870 884 6.885952 ATATGTTAGAGGCGCGAGATATAT 57.114 37.500 12.10 0.00 0.00 0.86
871 885 7.981102 ATATGTTAGAGGCGCGAGATATATA 57.019 36.000 12.10 0.00 0.00 0.86
872 886 6.885952 ATGTTAGAGGCGCGAGATATATAT 57.114 37.500 12.10 0.00 0.00 0.86
893 907 0.252479 CAGTCAGCCAAGATCTGCCT 59.748 55.000 0.00 0.00 0.00 4.75
894 908 0.540923 AGTCAGCCAAGATCTGCCTC 59.459 55.000 0.00 0.00 0.00 4.70
895 909 0.809241 GTCAGCCAAGATCTGCCTCG 60.809 60.000 0.00 0.00 0.00 4.63
896 910 1.220206 CAGCCAAGATCTGCCTCGT 59.780 57.895 0.00 0.00 0.00 4.18
897 911 0.809241 CAGCCAAGATCTGCCTCGTC 60.809 60.000 0.00 0.00 0.00 4.20
898 912 1.219124 GCCAAGATCTGCCTCGTCA 59.781 57.895 0.00 0.00 0.00 4.35
899 913 0.179062 GCCAAGATCTGCCTCGTCAT 60.179 55.000 0.00 0.00 0.00 3.06
900 914 1.069204 GCCAAGATCTGCCTCGTCATA 59.931 52.381 0.00 0.00 0.00 2.15
901 915 2.483714 GCCAAGATCTGCCTCGTCATAA 60.484 50.000 0.00 0.00 0.00 1.90
902 916 3.797039 CCAAGATCTGCCTCGTCATAAA 58.203 45.455 0.00 0.00 0.00 1.40
903 917 4.191544 CCAAGATCTGCCTCGTCATAAAA 58.808 43.478 0.00 0.00 0.00 1.52
904 918 4.272018 CCAAGATCTGCCTCGTCATAAAAG 59.728 45.833 0.00 0.00 0.00 2.27
905 919 3.462021 AGATCTGCCTCGTCATAAAAGC 58.538 45.455 0.00 0.00 0.00 3.51
906 920 3.133721 AGATCTGCCTCGTCATAAAAGCT 59.866 43.478 0.00 0.00 0.00 3.74
907 921 3.334583 TCTGCCTCGTCATAAAAGCTT 57.665 42.857 0.00 0.00 0.00 3.74
908 922 3.674997 TCTGCCTCGTCATAAAAGCTTT 58.325 40.909 5.69 5.69 0.00 3.51
909 923 4.072131 TCTGCCTCGTCATAAAAGCTTTT 58.928 39.130 26.50 26.50 0.00 2.27
910 924 4.518970 TCTGCCTCGTCATAAAAGCTTTTT 59.481 37.500 28.21 13.94 0.00 1.94
927 941 3.488048 TTTTTGCGGAAATGCCTCG 57.512 47.368 1.94 0.00 0.00 4.63
1028 1052 3.749064 GGCGTCGTCTCTGCCTCA 61.749 66.667 0.00 0.00 45.40 3.86
1032 1056 0.241213 CGTCGTCTCTGCCTCAGAAA 59.759 55.000 0.00 0.00 40.18 2.52
1037 1061 0.244994 TCTCTGCCTCAGAAACTCGC 59.755 55.000 0.00 0.00 40.18 5.03
1038 1062 0.739112 CTCTGCCTCAGAAACTCGCC 60.739 60.000 0.00 0.00 40.18 5.54
1185 1215 2.507102 ATCGTGCACTTCTCCGCG 60.507 61.111 16.19 0.00 36.39 6.46
1432 1501 2.792947 CCCGTACTGGCCAGCGTAT 61.793 63.158 33.06 15.89 35.87 3.06
1442 1511 2.104928 CAGCGTATCTGCAGGCGA 59.895 61.111 23.11 3.74 35.78 5.54
1705 1816 2.224079 CACTGACCATGCATATTACGGC 59.776 50.000 0.00 0.00 0.00 5.68
1786 1897 3.055675 CCAACGACTACATCCAACCCTTA 60.056 47.826 0.00 0.00 0.00 2.69
1804 1915 4.003648 CCTTATTCCAGAACAAGACGCTT 58.996 43.478 0.00 0.00 0.00 4.68
2036 2232 2.821378 CACATGTTGAAATCCCAGCTCA 59.179 45.455 0.00 0.00 0.00 4.26
2098 2294 4.706035 ACGTCGACTACTATGAGGAGATT 58.294 43.478 14.70 0.00 0.00 2.40
2135 2331 1.682849 CCGGTGGAGAATGGGTTCA 59.317 57.895 0.00 0.00 36.79 3.18
2167 2363 2.586079 CTGGATGCGTGCTACCCG 60.586 66.667 0.00 0.00 0.00 5.28
2187 2386 0.903454 GTCTTCGTTCCTGGGAGGGA 60.903 60.000 0.00 0.00 35.59 4.20
2317 2516 2.896854 CCGCCCATCATGTCCACG 60.897 66.667 0.00 0.00 0.00 4.94
2536 4423 2.779506 ACTAGTCTTCTTTTTGCGGGG 58.220 47.619 0.00 0.00 0.00 5.73
2539 4426 1.954382 AGTCTTCTTTTTGCGGGGTTC 59.046 47.619 0.00 0.00 0.00 3.62
2541 4428 2.361119 GTCTTCTTTTTGCGGGGTTCTT 59.639 45.455 0.00 0.00 0.00 2.52
2542 4429 3.566742 GTCTTCTTTTTGCGGGGTTCTTA 59.433 43.478 0.00 0.00 0.00 2.10
2543 4430 4.037089 GTCTTCTTTTTGCGGGGTTCTTAA 59.963 41.667 0.00 0.00 0.00 1.85
2704 4948 6.949117 AAGATAGCATCATTATCCCTGACT 57.051 37.500 0.00 0.00 0.00 3.41
2852 5358 6.545504 TGAAACTTGACTATGAGAAAGCAC 57.454 37.500 0.00 0.00 0.00 4.40
2857 5363 5.698545 ACTTGACTATGAGAAAGCACTTGAC 59.301 40.000 0.00 0.00 0.00 3.18
2866 5372 4.877282 AGAAAGCACTTGACAGAGTAGAC 58.123 43.478 0.00 0.00 0.00 2.59
2898 5404 6.173339 TCCTCCACAACTTGCTTAAGATTAG 58.827 40.000 6.67 2.17 0.00 1.73
2899 5405 6.013725 TCCTCCACAACTTGCTTAAGATTAGA 60.014 38.462 6.67 0.00 0.00 2.10
2938 5450 3.435601 GGGTGCATTGGATAGACCTGATT 60.436 47.826 0.00 0.00 39.86 2.57
3038 5550 5.611374 TGTGAAAGCTACTAATAGGCATCC 58.389 41.667 0.00 0.00 0.00 3.51
3050 5562 1.002069 AGGCATCCCATCAAAGGTCA 58.998 50.000 0.00 0.00 0.00 4.02
3082 5594 1.186200 TTGTGCTGGAGCTATCGTCT 58.814 50.000 0.00 0.00 42.66 4.18
3084 5596 0.457851 GTGCTGGAGCTATCGTCTGT 59.542 55.000 0.00 0.00 42.66 3.41
3085 5597 1.134965 GTGCTGGAGCTATCGTCTGTT 60.135 52.381 0.00 0.00 42.66 3.16
3086 5598 1.134995 TGCTGGAGCTATCGTCTGTTG 60.135 52.381 0.00 0.00 42.66 3.33
3087 5599 1.804372 GCTGGAGCTATCGTCTGTTGG 60.804 57.143 0.00 0.00 38.21 3.77
3088 5600 0.824109 TGGAGCTATCGTCTGTTGGG 59.176 55.000 0.00 0.00 0.00 4.12
3089 5601 0.105039 GGAGCTATCGTCTGTTGGGG 59.895 60.000 0.00 0.00 0.00 4.96
3091 5603 1.480954 GAGCTATCGTCTGTTGGGGAA 59.519 52.381 0.00 0.00 0.00 3.97
3092 5604 1.207329 AGCTATCGTCTGTTGGGGAAC 59.793 52.381 0.00 0.00 0.00 3.62
3093 5605 1.922570 CTATCGTCTGTTGGGGAACG 58.077 55.000 0.00 0.00 0.00 3.95
3094 5606 1.203994 CTATCGTCTGTTGGGGAACGT 59.796 52.381 0.00 0.00 0.00 3.99
3095 5607 1.259609 ATCGTCTGTTGGGGAACGTA 58.740 50.000 0.00 0.00 0.00 3.57
3096 5608 0.599558 TCGTCTGTTGGGGAACGTAG 59.400 55.000 0.00 0.00 0.00 3.51
3099 5611 2.030007 CGTCTGTTGGGGAACGTAGTAA 60.030 50.000 0.00 0.00 45.00 2.24
3100 5612 3.367703 CGTCTGTTGGGGAACGTAGTAAT 60.368 47.826 0.00 0.00 45.00 1.89
3101 5613 4.572909 GTCTGTTGGGGAACGTAGTAATT 58.427 43.478 0.00 0.00 45.00 1.40
3102 5614 4.999311 GTCTGTTGGGGAACGTAGTAATTT 59.001 41.667 0.00 0.00 45.00 1.82
3103 5615 5.121298 GTCTGTTGGGGAACGTAGTAATTTC 59.879 44.000 0.00 0.00 45.00 2.17
3104 5616 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
3105 5617 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
3107 5619 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
3108 5620 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
3125 5637 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
3126 5638 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
3127 5639 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
3128 5640 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
3133 5645 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
3134 5646 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
3136 5648 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
3137 5649 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
3138 5650 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
3139 5651 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
3140 5652 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
3141 5653 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
3143 5655 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
3144 5656 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
3145 5657 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
3146 5658 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
3147 5659 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
3149 5661 4.663334 AGATCATGGTGATGCATAGCAAT 58.337 39.130 0.00 0.00 43.62 3.56
3150 5662 4.459337 AGATCATGGTGATGCATAGCAATG 59.541 41.667 0.00 5.10 43.62 2.82
3151 5663 3.822940 TCATGGTGATGCATAGCAATGA 58.177 40.909 13.21 13.21 43.62 2.57
3153 5665 3.564053 TGGTGATGCATAGCAATGAGA 57.436 42.857 0.00 0.00 43.62 3.27
3155 5667 2.812591 GGTGATGCATAGCAATGAGAGG 59.187 50.000 0.00 0.00 43.62 3.69
3157 5669 2.224695 TGATGCATAGCAATGAGAGGGG 60.225 50.000 0.00 0.00 43.62 4.79
3158 5670 1.510492 TGCATAGCAATGAGAGGGGA 58.490 50.000 0.00 0.00 34.76 4.81
3161 5673 2.289569 GCATAGCAATGAGAGGGGAGAG 60.290 54.545 0.00 0.00 34.84 3.20
3163 5675 1.202330 AGCAATGAGAGGGGAGAGTG 58.798 55.000 0.00 0.00 0.00 3.51
3164 5676 0.908198 GCAATGAGAGGGGAGAGTGT 59.092 55.000 0.00 0.00 0.00 3.55
3166 5678 2.938756 GCAATGAGAGGGGAGAGTGTTG 60.939 54.545 0.00 0.00 0.00 3.33
3168 5680 1.633774 TGAGAGGGGAGAGTGTTGTC 58.366 55.000 0.00 0.00 0.00 3.18
3169 5681 1.148027 TGAGAGGGGAGAGTGTTGTCT 59.852 52.381 0.00 0.00 0.00 3.41
3171 5683 2.756207 GAGAGGGGAGAGTGTTGTCTAC 59.244 54.545 0.00 0.00 0.00 2.59
3172 5684 1.473278 GAGGGGAGAGTGTTGTCTACG 59.527 57.143 0.00 0.00 0.00 3.51
3173 5685 1.203025 AGGGGAGAGTGTTGTCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
3175 5687 2.163211 GGGGAGAGTGTTGTCTACGTAC 59.837 54.545 0.00 0.00 0.00 3.67
3179 5691 3.080319 AGAGTGTTGTCTACGTACCCTC 58.920 50.000 0.00 0.00 0.00 4.30
3180 5692 2.816087 GAGTGTTGTCTACGTACCCTCA 59.184 50.000 0.00 0.00 0.00 3.86
3181 5693 3.428532 AGTGTTGTCTACGTACCCTCAT 58.571 45.455 0.00 0.00 0.00 2.90
3182 5694 4.592942 AGTGTTGTCTACGTACCCTCATA 58.407 43.478 0.00 0.00 0.00 2.15
3185 5697 4.637534 TGTTGTCTACGTACCCTCATAGAC 59.362 45.833 4.30 4.30 42.53 2.59
3186 5698 3.813443 TGTCTACGTACCCTCATAGACC 58.187 50.000 8.04 0.00 41.84 3.85
3187 5699 2.805099 GTCTACGTACCCTCATAGACCG 59.195 54.545 0.00 0.00 38.29 4.79
3188 5700 2.149578 CTACGTACCCTCATAGACCGG 58.850 57.143 0.00 0.00 0.00 5.28
3191 5703 1.607628 CGTACCCTCATAGACCGGAAG 59.392 57.143 9.46 0.00 0.00 3.46
3192 5704 2.747467 CGTACCCTCATAGACCGGAAGA 60.747 54.545 9.46 0.00 0.00 2.87
3193 5705 2.074729 ACCCTCATAGACCGGAAGAG 57.925 55.000 9.46 7.41 0.00 2.85
3194 5706 1.333177 CCCTCATAGACCGGAAGAGG 58.667 60.000 9.46 15.95 44.26 3.69
3195 5707 1.133450 CCCTCATAGACCGGAAGAGGA 60.133 57.143 23.74 10.00 46.89 3.71
3196 5708 2.667470 CCTCATAGACCGGAAGAGGAA 58.333 52.381 9.46 0.00 46.89 3.36
3197 5709 2.625790 CCTCATAGACCGGAAGAGGAAG 59.374 54.545 9.46 0.00 46.89 3.46
3199 5711 1.033574 ATAGACCGGAAGAGGAAGCG 58.966 55.000 9.46 0.00 34.73 4.68
3201 5713 1.186267 AGACCGGAAGAGGAAGCGTT 61.186 55.000 9.46 0.00 34.73 4.84
3203 5715 0.531200 ACCGGAAGAGGAAGCGTTAG 59.469 55.000 9.46 0.00 34.73 2.34
3204 5716 0.806492 CCGGAAGAGGAAGCGTTAGC 60.806 60.000 0.00 0.00 45.58 3.09
3217 5729 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
3218 5730 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
3219 5731 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
3220 5732 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
3221 5733 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
3223 5735 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
3224 5736 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
3225 5737 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
3226 5738 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
3227 5739 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
3228 5740 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
3230 5742 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
3231 5743 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
3232 5744 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
3233 5745 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
3234 5746 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
3235 5747 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
3236 5748 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
3254 5766 4.467084 GGCCCGACCGATCAAGCA 62.467 66.667 0.00 0.00 0.00 3.91
3255 5767 3.195698 GCCCGACCGATCAAGCAC 61.196 66.667 0.00 0.00 0.00 4.40
3256 5768 2.511600 CCCGACCGATCAAGCACC 60.512 66.667 0.00 0.00 0.00 5.01
3257 5769 2.885644 CCGACCGATCAAGCACCG 60.886 66.667 0.00 0.00 0.00 4.94
3258 5770 2.180769 CGACCGATCAAGCACCGA 59.819 61.111 0.00 0.00 0.00 4.69
3260 5772 1.011968 CGACCGATCAAGCACCGAAA 61.012 55.000 0.00 0.00 0.00 3.46
3262 5774 0.034896 ACCGATCAAGCACCGAAACT 59.965 50.000 0.00 0.00 0.00 2.66
3263 5775 1.274167 ACCGATCAAGCACCGAAACTA 59.726 47.619 0.00 0.00 0.00 2.24
3264 5776 1.659098 CCGATCAAGCACCGAAACTAC 59.341 52.381 0.00 0.00 0.00 2.73
3265 5777 1.320555 CGATCAAGCACCGAAACTACG 59.679 52.381 0.00 0.00 0.00 3.51
3267 5779 1.774639 TCAAGCACCGAAACTACGAC 58.225 50.000 0.00 0.00 35.09 4.34
3268 5780 1.067364 TCAAGCACCGAAACTACGACA 59.933 47.619 0.00 0.00 35.09 4.35
3269 5781 1.191647 CAAGCACCGAAACTACGACAC 59.808 52.381 0.00 0.00 35.09 3.67
3270 5782 0.319297 AGCACCGAAACTACGACACC 60.319 55.000 0.00 0.00 35.09 4.16
3271 5783 0.319297 GCACCGAAACTACGACACCT 60.319 55.000 0.00 0.00 35.09 4.00
3272 5784 1.694639 CACCGAAACTACGACACCTC 58.305 55.000 0.00 0.00 35.09 3.85
3273 5785 0.600057 ACCGAAACTACGACACCTCC 59.400 55.000 0.00 0.00 35.09 4.30
3275 5787 0.518636 CGAAACTACGACACCTCCGA 59.481 55.000 0.00 0.00 35.09 4.55
3276 5788 1.465354 CGAAACTACGACACCTCCGAG 60.465 57.143 0.00 0.00 35.09 4.63
3278 5790 1.613836 AACTACGACACCTCCGAGTT 58.386 50.000 0.00 0.00 0.00 3.01
3279 5791 1.163554 ACTACGACACCTCCGAGTTC 58.836 55.000 0.00 0.00 0.00 3.01
3280 5792 1.271271 ACTACGACACCTCCGAGTTCT 60.271 52.381 0.00 0.00 0.00 3.01
3283 5795 0.099082 CGACACCTCCGAGTTCTAGC 59.901 60.000 0.00 0.00 0.00 3.42
3285 5797 0.889306 ACACCTCCGAGTTCTAGCAC 59.111 55.000 0.00 0.00 0.00 4.40
3287 5799 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
3288 5800 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
3289 5801 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
3290 5802 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
3295 5807 3.670895 CGAGTTCTAGCACACGTTCATCT 60.671 47.826 4.36 0.00 0.00 2.90
3296 5808 4.238514 GAGTTCTAGCACACGTTCATCTT 58.761 43.478 0.00 0.00 0.00 2.40
3297 5809 3.990469 AGTTCTAGCACACGTTCATCTTG 59.010 43.478 0.00 0.00 0.00 3.02
3298 5810 3.934457 TCTAGCACACGTTCATCTTGA 57.066 42.857 0.00 0.00 0.00 3.02
3301 5813 3.044235 AGCACACGTTCATCTTGATGA 57.956 42.857 9.02 9.02 0.00 2.92
3302 5814 2.738846 AGCACACGTTCATCTTGATGAC 59.261 45.455 12.28 7.64 0.00 3.06
3304 5816 2.986479 CACACGTTCATCTTGATGACGA 59.014 45.455 26.01 10.15 33.06 4.20
3305 5817 3.614176 CACACGTTCATCTTGATGACGAT 59.386 43.478 26.01 17.32 33.06 3.73
3306 5818 3.859961 ACACGTTCATCTTGATGACGATC 59.140 43.478 26.01 13.50 33.06 3.69
3307 5819 3.243877 CACGTTCATCTTGATGACGATCC 59.756 47.826 26.01 10.43 33.06 3.36
3308 5820 2.797156 CGTTCATCTTGATGACGATCCC 59.203 50.000 20.14 5.37 31.60 3.85
3311 5823 0.681733 ATCTTGATGACGATCCCCGG 59.318 55.000 0.00 0.00 43.93 5.73
3312 5824 0.396556 TCTTGATGACGATCCCCGGA 60.397 55.000 0.73 0.00 43.93 5.14
3313 5825 0.249489 CTTGATGACGATCCCCGGAC 60.249 60.000 0.73 0.00 43.93 4.79
3314 5826 0.686441 TTGATGACGATCCCCGGACT 60.686 55.000 0.73 0.00 43.93 3.85
3315 5827 1.107538 TGATGACGATCCCCGGACTC 61.108 60.000 0.73 0.00 43.93 3.36
3316 5828 1.807495 GATGACGATCCCCGGACTCC 61.807 65.000 0.73 0.00 43.93 3.85
3328 5840 3.071580 GGACTCCGATCCAGCAAAG 57.928 57.895 0.00 0.00 38.77 2.77
3331 5843 0.687354 ACTCCGATCCAGCAAAGTGT 59.313 50.000 0.00 0.00 0.00 3.55
3332 5844 1.338200 ACTCCGATCCAGCAAAGTGTC 60.338 52.381 0.00 0.00 0.00 3.67
3333 5845 0.389817 TCCGATCCAGCAAAGTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
3334 5846 1.361668 CCGATCCAGCAAAGTGTCGG 61.362 60.000 0.00 0.00 41.98 4.79
3335 5847 1.361668 CGATCCAGCAAAGTGTCGGG 61.362 60.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.344309 CGTTCTCCGGCTAATTTTTAAAAATAA 57.656 29.630 23.01 10.10 37.62 1.40
51 52 7.485595 GCGTTCTCCGGCTAATTTTTAAAAATA 59.514 33.333 23.01 12.36 35.89 1.40
52 53 6.309494 GCGTTCTCCGGCTAATTTTTAAAAAT 59.691 34.615 18.40 18.40 37.33 1.82
53 54 5.630264 GCGTTCTCCGGCTAATTTTTAAAAA 59.370 36.000 15.38 15.38 36.94 1.94
54 55 5.048573 AGCGTTCTCCGGCTAATTTTTAAAA 60.049 36.000 0.00 0.00 37.83 1.52
55 56 4.456566 AGCGTTCTCCGGCTAATTTTTAAA 59.543 37.500 0.00 0.00 37.83 1.52
56 57 4.004982 AGCGTTCTCCGGCTAATTTTTAA 58.995 39.130 0.00 0.00 37.83 1.52
57 58 3.602483 AGCGTTCTCCGGCTAATTTTTA 58.398 40.909 0.00 0.00 37.83 1.52
58 59 2.418976 GAGCGTTCTCCGGCTAATTTTT 59.581 45.455 0.00 0.00 40.16 1.94
59 60 2.007608 GAGCGTTCTCCGGCTAATTTT 58.992 47.619 0.00 0.00 40.16 1.82
60 61 1.653151 GAGCGTTCTCCGGCTAATTT 58.347 50.000 0.00 0.00 40.16 1.82
61 62 3.364277 GAGCGTTCTCCGGCTAATT 57.636 52.632 0.00 0.00 40.16 1.40
70 71 0.809241 CTGCCATGAGGAGCGTTCTC 60.809 60.000 0.00 0.00 36.89 2.87
71 72 1.220206 CTGCCATGAGGAGCGTTCT 59.780 57.895 0.00 0.00 36.89 3.01
72 73 2.467826 GCTGCCATGAGGAGCGTTC 61.468 63.158 10.86 0.00 36.89 3.95
73 74 2.437359 GCTGCCATGAGGAGCGTT 60.437 61.111 10.86 0.00 36.89 4.84
74 75 3.709633 TGCTGCCATGAGGAGCGT 61.710 61.111 17.99 0.00 39.46 5.07
75 76 3.200593 GTGCTGCCATGAGGAGCG 61.201 66.667 17.99 2.57 39.46 5.03
76 77 1.453379 ATGTGCTGCCATGAGGAGC 60.453 57.895 16.93 16.93 38.07 4.70
77 78 1.101635 CCATGTGCTGCCATGAGGAG 61.102 60.000 23.71 9.99 43.99 3.69
78 79 1.077285 CCATGTGCTGCCATGAGGA 60.077 57.895 23.71 0.00 43.99 3.71
79 80 2.125326 CCCATGTGCTGCCATGAGG 61.125 63.158 23.71 19.59 43.99 3.86
80 81 2.125326 CCCCATGTGCTGCCATGAG 61.125 63.158 23.71 15.25 43.99 2.90
81 82 2.043752 CCCCATGTGCTGCCATGA 60.044 61.111 23.71 0.00 43.99 3.07
82 83 3.151710 CCCCCATGTGCTGCCATG 61.152 66.667 18.36 18.36 41.52 3.66
96 97 3.798511 GCTGCTACACCCTCCCCC 61.799 72.222 0.00 0.00 0.00 5.40
97 98 3.009115 TGCTGCTACACCCTCCCC 61.009 66.667 0.00 0.00 0.00 4.81
98 99 2.269241 GTGCTGCTACACCCTCCC 59.731 66.667 0.00 0.00 34.35 4.30
104 105 2.045926 CCCCAGGTGCTGCTACAC 60.046 66.667 0.00 1.52 39.94 2.90
105 106 4.033776 GCCCCAGGTGCTGCTACA 62.034 66.667 0.00 0.00 0.00 2.74
106 107 3.721706 AGCCCCAGGTGCTGCTAC 61.722 66.667 0.00 0.00 37.76 3.58
111 112 3.721706 GCTACAGCCCCAGGTGCT 61.722 66.667 0.00 0.00 45.66 4.40
112 113 2.843912 ATTGCTACAGCCCCAGGTGC 62.844 60.000 0.00 0.00 45.66 5.01
114 115 0.409484 AAATTGCTACAGCCCCAGGT 59.591 50.000 0.00 0.00 41.18 4.00
115 116 1.106285 GAAATTGCTACAGCCCCAGG 58.894 55.000 0.00 0.00 41.18 4.45
116 117 1.747355 CTGAAATTGCTACAGCCCCAG 59.253 52.381 0.00 0.00 41.18 4.45
117 118 1.354031 TCTGAAATTGCTACAGCCCCA 59.646 47.619 0.00 0.00 41.18 4.96
130 131 5.580998 TCTGTCTACCTGTACCTCTGAAAT 58.419 41.667 0.00 0.00 0.00 2.17
142 143 1.410932 CCCCTCCTCTCTGTCTACCTG 60.411 61.905 0.00 0.00 0.00 4.00
150 151 2.445654 GCCCTCCCCTCCTCTCTG 60.446 72.222 0.00 0.00 0.00 3.35
255 260 3.452627 TCTTTTCTCTGTAGCTCCATCCC 59.547 47.826 0.00 0.00 0.00 3.85
302 307 5.222130 ACTCCTACATTTTTCTGACCCACAT 60.222 40.000 0.00 0.00 0.00 3.21
309 314 4.002906 ACGCACTCCTACATTTTTCTGA 57.997 40.909 0.00 0.00 0.00 3.27
322 327 0.173708 CCAGGAAGACTACGCACTCC 59.826 60.000 0.00 0.00 0.00 3.85
386 392 4.457834 AATGTGGAAACGTTTTCACCAA 57.542 36.364 37.29 25.90 44.33 3.67
387 393 4.398358 TGTAATGTGGAAACGTTTTCACCA 59.602 37.500 37.29 28.06 44.33 4.17
389 395 5.575019 ACTGTAATGTGGAAACGTTTTCAC 58.425 37.500 35.40 35.40 45.01 3.18
392 398 6.391537 ACAAACTGTAATGTGGAAACGTTTT 58.608 32.000 15.89 0.03 0.00 2.43
403 409 9.507329 AGATGTGAATTAGACAAACTGTAATGT 57.493 29.630 0.00 0.00 0.00 2.71
437 443 9.847224 GGGAGTTTAGATGTGATATCCTTAAAA 57.153 33.333 0.00 0.00 0.00 1.52
438 444 8.998814 TGGGAGTTTAGATGTGATATCCTTAAA 58.001 33.333 0.00 0.00 0.00 1.52
439 445 8.429641 GTGGGAGTTTAGATGTGATATCCTTAA 58.570 37.037 0.00 0.00 0.00 1.85
440 446 7.567250 TGTGGGAGTTTAGATGTGATATCCTTA 59.433 37.037 0.00 0.00 0.00 2.69
441 447 6.386927 TGTGGGAGTTTAGATGTGATATCCTT 59.613 38.462 0.00 0.00 0.00 3.36
442 448 5.905331 TGTGGGAGTTTAGATGTGATATCCT 59.095 40.000 0.00 0.00 0.00 3.24
443 449 6.174720 TGTGGGAGTTTAGATGTGATATCC 57.825 41.667 0.00 0.00 0.00 2.59
444 450 7.275920 ACTTGTGGGAGTTTAGATGTGATATC 58.724 38.462 0.00 0.00 0.00 1.63
445 451 7.200434 ACTTGTGGGAGTTTAGATGTGATAT 57.800 36.000 0.00 0.00 0.00 1.63
446 452 6.620877 ACTTGTGGGAGTTTAGATGTGATA 57.379 37.500 0.00 0.00 0.00 2.15
447 453 5.505181 ACTTGTGGGAGTTTAGATGTGAT 57.495 39.130 0.00 0.00 0.00 3.06
448 454 4.974645 ACTTGTGGGAGTTTAGATGTGA 57.025 40.909 0.00 0.00 0.00 3.58
452 458 9.726438 GCATTATATACTTGTGGGAGTTTAGAT 57.274 33.333 0.00 0.00 0.00 1.98
453 459 8.710239 TGCATTATATACTTGTGGGAGTTTAGA 58.290 33.333 0.00 0.00 0.00 2.10
454 460 8.902540 TGCATTATATACTTGTGGGAGTTTAG 57.097 34.615 0.00 0.00 0.00 1.85
455 461 7.444183 GCTGCATTATATACTTGTGGGAGTTTA 59.556 37.037 0.00 0.00 0.00 2.01
456 462 6.263168 GCTGCATTATATACTTGTGGGAGTTT 59.737 38.462 0.00 0.00 0.00 2.66
457 463 5.765182 GCTGCATTATATACTTGTGGGAGTT 59.235 40.000 0.00 0.00 0.00 3.01
458 464 5.163205 TGCTGCATTATATACTTGTGGGAGT 60.163 40.000 0.00 0.00 0.00 3.85
459 465 5.308014 TGCTGCATTATATACTTGTGGGAG 58.692 41.667 0.00 0.00 0.00 4.30
460 466 5.303259 TGCTGCATTATATACTTGTGGGA 57.697 39.130 0.00 0.00 0.00 4.37
461 467 5.299028 TGTTGCTGCATTATATACTTGTGGG 59.701 40.000 1.84 0.00 0.00 4.61
462 468 6.375945 TGTTGCTGCATTATATACTTGTGG 57.624 37.500 1.84 0.00 0.00 4.17
463 469 7.696755 TCTTGTTGCTGCATTATATACTTGTG 58.303 34.615 1.84 0.00 0.00 3.33
464 470 7.864108 TCTTGTTGCTGCATTATATACTTGT 57.136 32.000 1.84 0.00 0.00 3.16
465 471 9.013490 GTTTCTTGTTGCTGCATTATATACTTG 57.987 33.333 1.84 0.00 0.00 3.16
466 472 8.739039 TGTTTCTTGTTGCTGCATTATATACTT 58.261 29.630 1.84 0.00 0.00 2.24
467 473 8.279970 TGTTTCTTGTTGCTGCATTATATACT 57.720 30.769 1.84 0.00 0.00 2.12
468 474 8.909708 TTGTTTCTTGTTGCTGCATTATATAC 57.090 30.769 1.84 0.00 0.00 1.47
469 475 9.920133 TTTTGTTTCTTGTTGCTGCATTATATA 57.080 25.926 1.84 0.00 0.00 0.86
470 476 8.830201 TTTTGTTTCTTGTTGCTGCATTATAT 57.170 26.923 1.84 0.00 0.00 0.86
471 477 8.654230 TTTTTGTTTCTTGTTGCTGCATTATA 57.346 26.923 1.84 0.00 0.00 0.98
472 478 7.551035 TTTTTGTTTCTTGTTGCTGCATTAT 57.449 28.000 1.84 0.00 0.00 1.28
473 479 6.974932 TTTTTGTTTCTTGTTGCTGCATTA 57.025 29.167 1.84 0.00 0.00 1.90
474 480 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
508 514 5.695851 CACTCTGCTTGTGGTCTATTTTT 57.304 39.130 0.00 0.00 0.00 1.94
518 524 2.174363 TGATGTCCACTCTGCTTGTG 57.826 50.000 0.00 0.00 35.39 3.33
519 525 2.936919 TTGATGTCCACTCTGCTTGT 57.063 45.000 0.00 0.00 0.00 3.16
520 526 4.778534 AAATTGATGTCCACTCTGCTTG 57.221 40.909 0.00 0.00 0.00 4.01
521 527 5.809001 TCTAAATTGATGTCCACTCTGCTT 58.191 37.500 0.00 0.00 0.00 3.91
522 528 5.426689 TCTAAATTGATGTCCACTCTGCT 57.573 39.130 0.00 0.00 0.00 4.24
523 529 6.057627 CATCTAAATTGATGTCCACTCTGC 57.942 41.667 0.00 0.00 39.05 4.26
563 569 6.238897 GGTTCTGTCTAGGACACATCTAGATG 60.239 46.154 27.63 27.63 43.25 2.90
564 570 5.830991 GGTTCTGTCTAGGACACATCTAGAT 59.169 44.000 0.00 0.00 43.25 1.98
565 571 5.044772 AGGTTCTGTCTAGGACACATCTAGA 60.045 44.000 0.00 0.00 37.67 2.43
566 572 5.197451 AGGTTCTGTCTAGGACACATCTAG 58.803 45.833 0.00 0.00 37.67 2.43
567 573 5.194473 AGGTTCTGTCTAGGACACATCTA 57.806 43.478 0.00 0.00 37.67 1.98
568 574 4.054359 AGGTTCTGTCTAGGACACATCT 57.946 45.455 0.00 0.00 37.67 2.90
569 575 4.810191 AAGGTTCTGTCTAGGACACATC 57.190 45.455 0.00 0.00 37.67 3.06
570 576 4.020128 GGAAAGGTTCTGTCTAGGACACAT 60.020 45.833 0.00 0.00 37.67 3.21
571 577 3.323979 GGAAAGGTTCTGTCTAGGACACA 59.676 47.826 0.00 0.00 37.67 3.72
572 578 3.323979 TGGAAAGGTTCTGTCTAGGACAC 59.676 47.826 0.00 0.00 37.67 3.67
573 579 3.583228 TGGAAAGGTTCTGTCTAGGACA 58.417 45.455 0.43 0.43 40.50 4.02
574 580 4.828072 ATGGAAAGGTTCTGTCTAGGAC 57.172 45.455 0.00 0.00 0.00 3.85
575 581 8.798975 ATATAATGGAAAGGTTCTGTCTAGGA 57.201 34.615 0.00 0.00 0.00 2.94
581 587 9.289782 GCTTCATATATAATGGAAAGGTTCTGT 57.710 33.333 0.00 0.00 0.00 3.41
582 588 9.512588 AGCTTCATATATAATGGAAAGGTTCTG 57.487 33.333 0.00 0.00 0.00 3.02
603 609 7.486232 GTCAGCCAAAACATTCTTTATAGCTTC 59.514 37.037 0.00 0.00 0.00 3.86
643 649 1.227999 CCAAACAGCACGTCACGGAT 61.228 55.000 0.35 0.00 0.00 4.18
655 661 3.570559 ACGTGTCAAACAAACCAAACAG 58.429 40.909 0.00 0.00 0.00 3.16
679 688 0.939698 AGGGGAGAGTATACCGGGTT 59.060 55.000 4.31 0.00 0.00 4.11
692 701 0.193574 TTATGCCTAGGGGAGGGGAG 59.806 60.000 11.72 0.00 46.81 4.30
693 702 0.193574 CTTATGCCTAGGGGAGGGGA 59.806 60.000 11.72 0.00 46.81 4.81
694 703 0.104409 ACTTATGCCTAGGGGAGGGG 60.104 60.000 11.72 0.00 46.81 4.79
695 704 1.353091 GACTTATGCCTAGGGGAGGG 58.647 60.000 11.72 0.00 46.81 4.30
718 727 1.737196 GATCGATCGATGATGGCGCG 61.737 60.000 33.86 0.00 34.60 6.86
842 851 3.787785 TCGCGCCTCTAACATATTCAAA 58.212 40.909 0.00 0.00 0.00 2.69
845 854 3.284323 TCTCGCGCCTCTAACATATTC 57.716 47.619 0.00 0.00 0.00 1.75
868 882 4.020751 GCAGATCTTGGCTGACTGGATATA 60.021 45.833 0.00 0.00 35.39 0.86
869 883 3.244491 GCAGATCTTGGCTGACTGGATAT 60.244 47.826 0.00 0.00 35.39 1.63
870 884 2.103771 GCAGATCTTGGCTGACTGGATA 59.896 50.000 0.00 0.00 35.39 2.59
871 885 1.134159 GCAGATCTTGGCTGACTGGAT 60.134 52.381 0.00 0.00 35.39 3.41
872 886 0.251354 GCAGATCTTGGCTGACTGGA 59.749 55.000 0.00 0.00 35.39 3.86
909 923 0.671251 ACGAGGCATTTCCGCAAAAA 59.329 45.000 0.00 0.00 40.77 1.94
910 924 0.239879 GACGAGGCATTTCCGCAAAA 59.760 50.000 0.00 0.00 40.77 2.44
911 925 0.886938 TGACGAGGCATTTCCGCAAA 60.887 50.000 0.00 0.00 40.77 3.68
912 926 0.676466 ATGACGAGGCATTTCCGCAA 60.676 50.000 0.00 0.00 40.77 4.85
913 927 1.078497 ATGACGAGGCATTTCCGCA 60.078 52.632 0.00 0.00 40.77 5.69
914 928 1.089481 TGATGACGAGGCATTTCCGC 61.089 55.000 0.00 0.00 40.77 5.54
915 929 1.586422 ATGATGACGAGGCATTTCCG 58.414 50.000 0.00 0.00 40.77 4.30
916 930 5.499139 TTTTATGATGACGAGGCATTTCC 57.501 39.130 0.00 0.00 0.00 3.13
917 931 4.972440 GCTTTTATGATGACGAGGCATTTC 59.028 41.667 0.00 0.00 0.00 2.17
918 932 4.641989 AGCTTTTATGATGACGAGGCATTT 59.358 37.500 0.00 0.00 0.00 2.32
919 933 4.202441 AGCTTTTATGATGACGAGGCATT 58.798 39.130 0.00 0.00 0.00 3.56
920 934 3.813443 AGCTTTTATGATGACGAGGCAT 58.187 40.909 0.00 0.00 0.00 4.40
921 935 3.266510 AGCTTTTATGATGACGAGGCA 57.733 42.857 0.00 0.00 0.00 4.75
922 936 3.185391 GCTAGCTTTTATGATGACGAGGC 59.815 47.826 7.70 0.00 0.00 4.70
923 937 4.626042 AGCTAGCTTTTATGATGACGAGG 58.374 43.478 12.68 0.00 0.00 4.63
924 938 6.209361 TGTAGCTAGCTTTTATGATGACGAG 58.791 40.000 24.88 0.00 0.00 4.18
925 939 6.144078 TGTAGCTAGCTTTTATGATGACGA 57.856 37.500 24.88 0.00 0.00 4.20
926 940 6.563010 GCTTGTAGCTAGCTTTTATGATGACG 60.563 42.308 24.88 1.12 38.45 4.35
927 941 6.293135 GGCTTGTAGCTAGCTTTTATGATGAC 60.293 42.308 24.88 11.95 41.99 3.06
1014 1038 1.271102 AGTTTCTGAGGCAGAGACGAC 59.729 52.381 11.04 4.28 46.05 4.34
1219 1249 2.125512 CCGGCCGAAGAAGGTCTG 60.126 66.667 30.73 0.44 32.70 3.51
1573 1651 3.000819 AACCCGATCTGGACGCCA 61.001 61.111 10.54 0.00 42.00 5.69
1705 1816 1.523258 CGCCTTCCTCTCTGCATGG 60.523 63.158 0.00 0.00 0.00 3.66
1786 1897 3.126001 TCAAGCGTCTTGTTCTGGAAT 57.874 42.857 15.83 0.00 0.00 3.01
1879 2075 0.953471 GCACGTACATGGTCTTGGCA 60.953 55.000 0.00 0.00 0.00 4.92
2048 2244 3.860930 AAACGCCCGGATGGTTGCT 62.861 57.895 0.73 0.00 36.04 3.91
2098 2294 1.967535 CTTGGTGACGAGGCTGAGA 59.032 57.895 0.00 0.00 38.28 3.27
2135 2331 4.363990 CAGCACCGTCTCCGCAGT 62.364 66.667 0.00 0.00 0.00 4.40
2167 2363 1.597461 CCTCCCAGGAACGAAGACC 59.403 63.158 0.00 0.00 37.67 3.85
2525 4412 6.020971 AGTAATTAAGAACCCCGCAAAAAG 57.979 37.500 0.00 0.00 0.00 2.27
2531 4418 4.259356 AGACAAGTAATTAAGAACCCCGC 58.741 43.478 0.00 0.00 0.00 6.13
2704 4948 4.890988 TCTTGGAGACCAACCTATCCATA 58.109 43.478 0.00 0.00 41.33 2.74
2852 5358 3.426615 AGTCCAGGTCTACTCTGTCAAG 58.573 50.000 0.00 0.00 0.00 3.02
2857 5363 3.020984 GAGGAAGTCCAGGTCTACTCTG 58.979 54.545 0.00 0.00 38.89 3.35
2898 5404 4.338400 GCACCCACTTATCATTAAACCCTC 59.662 45.833 0.00 0.00 0.00 4.30
2899 5405 4.264172 TGCACCCACTTATCATTAAACCCT 60.264 41.667 0.00 0.00 0.00 4.34
2938 5450 5.013079 ACACCCATAGATCTTTTGTGAGTGA 59.987 40.000 16.46 0.00 0.00 3.41
3038 5550 4.197750 CTCAGATCCTTGACCTTTGATGG 58.802 47.826 0.00 0.00 0.00 3.51
3074 5586 1.203994 ACGTTCCCCAACAGACGATAG 59.796 52.381 1.50 0.00 38.74 2.08
3082 5594 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
3084 5596 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3085 5597 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
3119 5631 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
3120 5632 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
3121 5633 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
3122 5634 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
3123 5635 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
3125 5637 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
3126 5638 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
3127 5639 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
3128 5640 4.457949 TCATTGCTATGCATCACCATGATC 59.542 41.667 0.19 0.00 38.76 2.92
3133 5645 3.473625 CTCTCATTGCTATGCATCACCA 58.526 45.455 0.19 0.00 38.76 4.17
3134 5646 2.812591 CCTCTCATTGCTATGCATCACC 59.187 50.000 0.19 0.00 38.76 4.02
3136 5648 2.224695 CCCCTCTCATTGCTATGCATCA 60.225 50.000 0.19 0.00 38.76 3.07
3137 5649 2.039480 TCCCCTCTCATTGCTATGCATC 59.961 50.000 0.19 0.00 38.76 3.91
3138 5650 2.040012 CTCCCCTCTCATTGCTATGCAT 59.960 50.000 3.79 3.79 38.76 3.96
3139 5651 1.419012 CTCCCCTCTCATTGCTATGCA 59.581 52.381 3.00 0.00 36.47 3.96
3140 5652 1.696336 TCTCCCCTCTCATTGCTATGC 59.304 52.381 3.00 0.00 0.00 3.14
3141 5653 2.971330 ACTCTCCCCTCTCATTGCTATG 59.029 50.000 1.30 1.30 0.00 2.23
3143 5655 2.292521 ACACTCTCCCCTCTCATTGCTA 60.293 50.000 0.00 0.00 0.00 3.49
3144 5656 1.202330 CACTCTCCCCTCTCATTGCT 58.798 55.000 0.00 0.00 0.00 3.91
3145 5657 0.908198 ACACTCTCCCCTCTCATTGC 59.092 55.000 0.00 0.00 0.00 3.56
3146 5658 2.304180 ACAACACTCTCCCCTCTCATTG 59.696 50.000 0.00 0.00 0.00 2.82
3147 5659 2.569404 GACAACACTCTCCCCTCTCATT 59.431 50.000 0.00 0.00 0.00 2.57
3149 5661 1.148027 AGACAACACTCTCCCCTCTCA 59.852 52.381 0.00 0.00 0.00 3.27
3150 5662 1.931635 AGACAACACTCTCCCCTCTC 58.068 55.000 0.00 0.00 0.00 3.20
3151 5663 2.810164 GTAGACAACACTCTCCCCTCT 58.190 52.381 0.00 0.00 0.00 3.69
3153 5665 1.203025 ACGTAGACAACACTCTCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
3155 5667 2.163211 GGTACGTAGACAACACTCTCCC 59.837 54.545 0.00 0.00 0.00 4.30
3157 5669 3.080319 AGGGTACGTAGACAACACTCTC 58.920 50.000 0.00 0.00 0.00 3.20
3158 5670 3.080319 GAGGGTACGTAGACAACACTCT 58.920 50.000 9.87 0.00 39.95 3.24
3161 5673 3.863142 ATGAGGGTACGTAGACAACAC 57.137 47.619 0.00 0.00 0.00 3.32
3168 5680 2.149578 CCGGTCTATGAGGGTACGTAG 58.850 57.143 0.00 0.00 0.00 3.51
3169 5681 1.768275 TCCGGTCTATGAGGGTACGTA 59.232 52.381 0.00 0.00 0.00 3.57
3171 5683 1.607628 CTTCCGGTCTATGAGGGTACG 59.392 57.143 0.00 0.00 0.00 3.67
3172 5684 2.885894 CTCTTCCGGTCTATGAGGGTAC 59.114 54.545 0.00 0.00 0.00 3.34
3173 5685 2.158505 CCTCTTCCGGTCTATGAGGGTA 60.159 54.545 13.18 0.00 40.25 3.69
3175 5687 1.133450 TCCTCTTCCGGTCTATGAGGG 60.133 57.143 18.24 5.96 43.14 4.30
3179 5691 1.269309 CGCTTCCTCTTCCGGTCTATG 60.269 57.143 0.00 0.00 0.00 2.23
3180 5692 1.033574 CGCTTCCTCTTCCGGTCTAT 58.966 55.000 0.00 0.00 0.00 1.98
3181 5693 0.323178 ACGCTTCCTCTTCCGGTCTA 60.323 55.000 0.00 0.00 0.00 2.59
3182 5694 1.186267 AACGCTTCCTCTTCCGGTCT 61.186 55.000 0.00 0.00 0.00 3.85
3185 5697 0.806492 GCTAACGCTTCCTCTTCCGG 60.806 60.000 0.00 0.00 0.00 5.14
3186 5698 0.108804 TGCTAACGCTTCCTCTTCCG 60.109 55.000 0.00 0.00 36.97 4.30
3187 5699 1.337823 TGTGCTAACGCTTCCTCTTCC 60.338 52.381 0.00 0.00 36.97 3.46
3188 5700 2.080286 TGTGCTAACGCTTCCTCTTC 57.920 50.000 0.00 0.00 36.97 2.87
3191 5703 0.438830 CGTTGTGCTAACGCTTCCTC 59.561 55.000 12.46 0.00 36.82 3.71
3192 5704 2.528797 CGTTGTGCTAACGCTTCCT 58.471 52.632 12.46 0.00 36.82 3.36
3199 5711 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
3201 5713 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
3203 5715 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
3204 5716 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
3206 5718 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
3207 5719 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
3208 5720 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
3209 5721 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
3210 5722 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
3211 5723 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
3212 5724 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
3214 5726 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
3216 5728 3.340552 CGTGAAGACGTACGACTACATC 58.659 50.000 24.41 15.62 42.54 3.06
3217 5729 2.094894 CCGTGAAGACGTACGACTACAT 59.905 50.000 24.41 6.17 44.54 2.29
3218 5730 1.460743 CCGTGAAGACGTACGACTACA 59.539 52.381 24.41 13.28 44.54 2.74
3219 5731 1.788344 GCCGTGAAGACGTACGACTAC 60.788 57.143 24.41 15.53 44.54 2.73
3220 5732 0.443869 GCCGTGAAGACGTACGACTA 59.556 55.000 24.41 3.99 44.54 2.59
3221 5733 1.208614 GCCGTGAAGACGTACGACT 59.791 57.895 24.41 19.11 44.54 4.18
3223 5735 2.562912 GGCCGTGAAGACGTACGA 59.437 61.111 24.41 0.00 44.54 3.43
3224 5736 2.505557 GGGCCGTGAAGACGTACG 60.506 66.667 15.01 15.01 44.54 3.67
3225 5737 2.505557 CGGGCCGTGAAGACGTAC 60.506 66.667 19.97 0.00 44.54 3.67
3226 5738 2.672651 TCGGGCCGTGAAGACGTA 60.673 61.111 27.32 0.00 44.54 3.57
3227 5739 4.353437 GTCGGGCCGTGAAGACGT 62.353 66.667 27.32 0.00 44.54 4.34
3237 5749 4.467084 TGCTTGATCGGTCGGGCC 62.467 66.667 9.60 0.00 0.00 5.80
3239 5751 2.511600 GGTGCTTGATCGGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
3240 5752 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
3241 5753 1.011968 TTTCGGTGCTTGATCGGTCG 61.012 55.000 0.00 0.00 0.00 4.79
3242 5754 0.442699 GTTTCGGTGCTTGATCGGTC 59.557 55.000 0.00 0.00 0.00 4.79
3244 5756 1.659098 GTAGTTTCGGTGCTTGATCGG 59.341 52.381 0.00 0.00 0.00 4.18
3245 5757 1.320555 CGTAGTTTCGGTGCTTGATCG 59.679 52.381 0.00 0.00 0.00 3.69
3246 5758 2.344741 GTCGTAGTTTCGGTGCTTGATC 59.655 50.000 0.00 0.00 0.00 2.92
3247 5759 2.288579 TGTCGTAGTTTCGGTGCTTGAT 60.289 45.455 0.00 0.00 0.00 2.57
3248 5760 1.067364 TGTCGTAGTTTCGGTGCTTGA 59.933 47.619 0.00 0.00 0.00 3.02
3250 5762 1.494824 GTGTCGTAGTTTCGGTGCTT 58.505 50.000 0.00 0.00 0.00 3.91
3251 5763 0.319297 GGTGTCGTAGTTTCGGTGCT 60.319 55.000 0.00 0.00 0.00 4.40
3252 5764 0.319297 AGGTGTCGTAGTTTCGGTGC 60.319 55.000 0.00 0.00 0.00 5.01
3254 5766 0.600057 GGAGGTGTCGTAGTTTCGGT 59.400 55.000 0.00 0.00 0.00 4.69
3255 5767 0.455633 CGGAGGTGTCGTAGTTTCGG 60.456 60.000 0.00 0.00 0.00 4.30
3256 5768 0.518636 TCGGAGGTGTCGTAGTTTCG 59.481 55.000 0.00 0.00 0.00 3.46
3257 5769 1.538950 ACTCGGAGGTGTCGTAGTTTC 59.461 52.381 10.23 0.00 0.00 2.78
3258 5770 1.613836 ACTCGGAGGTGTCGTAGTTT 58.386 50.000 10.23 0.00 0.00 2.66
3260 5772 1.163554 GAACTCGGAGGTGTCGTAGT 58.836 55.000 10.23 0.00 0.00 2.73
3262 5774 2.625737 CTAGAACTCGGAGGTGTCGTA 58.374 52.381 10.23 0.00 0.00 3.43
3263 5775 1.451067 CTAGAACTCGGAGGTGTCGT 58.549 55.000 10.23 0.00 0.00 4.34
3264 5776 0.099082 GCTAGAACTCGGAGGTGTCG 59.901 60.000 10.23 0.00 0.00 4.35
3265 5777 1.135344 GTGCTAGAACTCGGAGGTGTC 60.135 57.143 10.23 3.93 0.00 3.67
3267 5779 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
3268 5780 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
3269 5781 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
3270 5782 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
3271 5783 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
3272 5784 1.335597 TGAACGTGTGCTAGAACTCGG 60.336 52.381 24.99 10.58 40.39 4.63
3273 5785 2.046283 TGAACGTGTGCTAGAACTCG 57.954 50.000 21.00 21.00 41.49 4.18
3275 5787 3.944055 AGATGAACGTGTGCTAGAACT 57.056 42.857 1.64 0.00 0.00 3.01
3276 5788 3.987868 TCAAGATGAACGTGTGCTAGAAC 59.012 43.478 0.00 0.00 0.00 3.01
3278 5790 3.934457 TCAAGATGAACGTGTGCTAGA 57.066 42.857 0.00 0.00 0.00 2.43
3279 5791 4.176271 TCATCAAGATGAACGTGTGCTAG 58.824 43.478 10.16 0.00 44.14 3.42
3280 5792 4.186856 TCATCAAGATGAACGTGTGCTA 57.813 40.909 10.16 0.00 44.14 3.49
3290 5802 1.341209 CGGGGATCGTCATCAAGATGA 59.659 52.381 8.61 8.61 45.86 2.92
3295 5807 0.686441 AGTCCGGGGATCGTCATCAA 60.686 55.000 0.00 0.00 37.11 2.57
3296 5808 1.076265 AGTCCGGGGATCGTCATCA 60.076 57.895 0.00 0.00 37.11 3.07
3297 5809 1.660917 GAGTCCGGGGATCGTCATC 59.339 63.158 0.00 0.00 37.11 2.92
3298 5810 1.833049 GGAGTCCGGGGATCGTCAT 60.833 63.158 0.00 0.00 37.11 3.06
3311 5823 1.338200 ACACTTTGCTGGATCGGAGTC 60.338 52.381 0.00 0.00 0.00 3.36
3312 5824 0.687354 ACACTTTGCTGGATCGGAGT 59.313 50.000 0.00 0.00 0.00 3.85
3313 5825 1.363744 GACACTTTGCTGGATCGGAG 58.636 55.000 0.00 0.00 0.00 4.63
3314 5826 0.389817 CGACACTTTGCTGGATCGGA 60.390 55.000 0.00 0.00 0.00 4.55
3315 5827 1.361668 CCGACACTTTGCTGGATCGG 61.362 60.000 0.00 0.00 42.69 4.18
3316 5828 1.361668 CCCGACACTTTGCTGGATCG 61.362 60.000 0.00 0.00 0.00 3.69
3317 5829 2.471255 CCCGACACTTTGCTGGATC 58.529 57.895 0.00 0.00 0.00 3.36
3318 5830 4.722193 CCCGACACTTTGCTGGAT 57.278 55.556 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.