Multiple sequence alignment - TraesCS3A01G057000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G057000 chr3A 100.000 3994 0 0 1 3994 32877695 32873702 0.000000e+00 7376.0
1 TraesCS3A01G057000 chr3A 88.052 1607 177 11 1218 2818 32426424 32428021 0.000000e+00 1890.0
2 TraesCS3A01G057000 chr3A 86.340 388 26 12 3582 3966 32863259 32862896 8.040000e-107 398.0
3 TraesCS3A01G057000 chr3A 82.239 259 23 8 1081 1335 32883363 32883124 6.770000e-48 202.0
4 TraesCS3A01G057000 chr3A 100.000 30 0 0 3291 3320 518908176 518908205 5.580000e-04 56.5
5 TraesCS3A01G057000 chr3B 91.842 3089 157 36 949 3991 42125166 42128205 0.000000e+00 4220.0
6 TraesCS3A01G057000 chr3B 87.173 1606 186 13 1218 2818 41015763 41014173 0.000000e+00 1807.0
7 TraesCS3A01G057000 chr3B 90.560 339 21 6 619 951 42124782 42125115 4.740000e-119 438.0
8 TraesCS3A01G057000 chr3B 85.205 365 46 5 25 387 815480809 815480451 6.310000e-98 368.0
9 TraesCS3A01G057000 chr3B 76.331 169 27 7 3163 3318 2258325 2258493 1.190000e-10 78.7
10 TraesCS3A01G057000 chr3D 95.180 1971 77 11 949 2919 23731283 23729331 0.000000e+00 3097.0
11 TraesCS3A01G057000 chr3D 87.554 1607 185 12 1218 2818 23230787 23229190 0.000000e+00 1845.0
12 TraesCS3A01G057000 chr3D 88.180 1379 141 20 1441 2814 23858140 23859501 0.000000e+00 1624.0
13 TraesCS3A01G057000 chr3D 88.382 1162 69 26 2872 3994 23729428 23728294 0.000000e+00 1338.0
14 TraesCS3A01G057000 chr3D 91.346 312 14 4 641 952 23731627 23731329 7.990000e-112 414.0
15 TraesCS3A01G057000 chr3D 84.211 456 40 16 949 1398 23734707 23734278 7.990000e-112 414.0
16 TraesCS3A01G057000 chr3D 86.264 364 49 1 25 387 427058879 427058516 1.040000e-105 394.0
17 TraesCS3A01G057000 chr3D 83.095 420 57 10 1025 1441 23857660 23858068 1.750000e-98 370.0
18 TraesCS3A01G057000 chr3D 88.601 193 12 3 427 612 23732165 23731976 4.020000e-55 226.0
19 TraesCS3A01G057000 chr3D 87.417 151 9 8 954 1101 23885916 23885773 8.880000e-37 165.0
20 TraesCS3A01G057000 chr3D 83.537 164 15 8 641 804 23885296 23885145 4.160000e-30 143.0
21 TraesCS3A01G057000 chr2A 90.476 1890 144 25 979 2863 672946789 672944931 0.000000e+00 2460.0
22 TraesCS3A01G057000 chr2D 90.845 1835 137 15 1025 2856 528100190 528098384 0.000000e+00 2429.0
23 TraesCS3A01G057000 chr2B 90.458 1834 146 16 1025 2856 626092168 626090362 0.000000e+00 2390.0
24 TraesCS3A01G057000 chr5A 92.911 395 26 2 1 393 87410159 87409765 1.250000e-159 573.0
25 TraesCS3A01G057000 chr5A 91.774 389 30 2 1 387 17268829 17269217 1.260000e-149 540.0
26 TraesCS3A01G057000 chr5A 87.805 82 8 2 3139 3218 523575327 523575408 1.180000e-15 95.3
27 TraesCS3A01G057000 chr6D 91.092 348 30 1 3 349 43049223 43049570 1.680000e-128 470.0
28 TraesCS3A01G057000 chr7D 87.500 392 43 5 1 387 225836273 225835883 7.870000e-122 448.0
29 TraesCS3A01G057000 chr1B 86.538 364 47 2 25 386 678888881 678888518 2.240000e-107 399.0
30 TraesCS3A01G057000 chr4B 85.165 364 52 2 25 386 16505818 16505455 4.870000e-99 372.0
31 TraesCS3A01G057000 chrUn 84.384 365 55 2 25 387 85069617 85069981 1.360000e-94 357.0
32 TraesCS3A01G057000 chrUn 93.304 224 15 0 1218 1441 373565484 373565261 8.270000e-87 331.0
33 TraesCS3A01G057000 chr7A 77.674 215 34 12 3108 3318 523634085 523634289 7.010000e-23 119.0
34 TraesCS3A01G057000 chr6A 83.486 109 11 6 3112 3218 95075099 95074996 1.180000e-15 95.3
35 TraesCS3A01G057000 chr6A 82.418 91 13 3 3141 3229 10053511 10053600 4.280000e-10 76.8
36 TraesCS3A01G057000 chr6B 74.877 203 38 8 3144 3333 348659584 348659382 3.310000e-11 80.5
37 TraesCS3A01G057000 chr6B 86.111 72 8 2 3139 3208 348686968 348687039 4.280000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G057000 chr3A 32873702 32877695 3993 True 7376.0 7376 100.0000 1 3994 1 chr3A.!!$R2 3993
1 TraesCS3A01G057000 chr3A 32426424 32428021 1597 False 1890.0 1890 88.0520 1218 2818 1 chr3A.!!$F1 1600
2 TraesCS3A01G057000 chr3B 42124782 42128205 3423 False 2329.0 4220 91.2010 619 3991 2 chr3B.!!$F2 3372
3 TraesCS3A01G057000 chr3B 41014173 41015763 1590 True 1807.0 1807 87.1730 1218 2818 1 chr3B.!!$R1 1600
4 TraesCS3A01G057000 chr3D 23229190 23230787 1597 True 1845.0 1845 87.5540 1218 2818 1 chr3D.!!$R1 1600
5 TraesCS3A01G057000 chr3D 23728294 23734707 6413 True 1097.8 3097 89.5440 427 3994 5 chr3D.!!$R3 3567
6 TraesCS3A01G057000 chr3D 23857660 23859501 1841 False 997.0 1624 85.6375 1025 2814 2 chr3D.!!$F1 1789
7 TraesCS3A01G057000 chr2A 672944931 672946789 1858 True 2460.0 2460 90.4760 979 2863 1 chr2A.!!$R1 1884
8 TraesCS3A01G057000 chr2D 528098384 528100190 1806 True 2429.0 2429 90.8450 1025 2856 1 chr2D.!!$R1 1831
9 TraesCS3A01G057000 chr2B 626090362 626092168 1806 True 2390.0 2390 90.4580 1025 2856 1 chr2B.!!$R1 1831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.107312 AGCAATGGCACTAGCAGAGG 60.107 55.0 9.79 0.0 44.61 3.69 F
80 81 0.107508 GCAATGGCACTAGCAGAGGA 60.108 55.0 0.00 0.0 44.61 3.71 F
573 2690 0.179240 GCAATGAGTTGAGCGTGACG 60.179 55.0 0.00 0.0 37.53 4.35 F
1023 3535 0.526524 GGAAGATCGGTGCTGAGTCG 60.527 60.0 0.00 0.0 0.00 4.18 F
1160 3675 0.846870 AGTTCAAGGGAAGGGAGGGG 60.847 60.0 0.00 0.0 32.62 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1023 3535 0.536006 GGGTGTAGATCATGCCTGCC 60.536 60.000 0.00 0.00 0.00 4.85 R
1539 4137 1.198759 AGGTACAGGCCCACGAACAT 61.199 55.000 0.00 0.00 0.00 2.71 R
2141 4745 1.218047 GCTCATCTGCCCGTACACA 59.782 57.895 0.00 0.00 0.00 3.72 R
2905 5509 0.103026 TCTGGCGGTCGAATCATCAG 59.897 55.000 0.00 0.00 0.00 2.90 R
3120 5728 8.930527 TCTTAAATACAGATCCGGATCCTTTTA 58.069 33.333 35.53 27.48 38.58 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.531982 GGCTATTGTGGTCAACTCTATATATGA 58.468 37.037 0.00 0.00 36.33 2.15
31 32 8.127150 TGTGGTCAACTCTATATATGATCCTG 57.873 38.462 0.00 0.00 0.00 3.86
32 33 7.038659 GTGGTCAACTCTATATATGATCCTGC 58.961 42.308 0.00 0.00 0.00 4.85
33 34 6.956435 TGGTCAACTCTATATATGATCCTGCT 59.044 38.462 0.00 0.00 0.00 4.24
35 36 8.410141 GGTCAACTCTATATATGATCCTGCTAC 58.590 40.741 0.00 0.00 0.00 3.58
36 37 9.184523 GTCAACTCTATATATGATCCTGCTACT 57.815 37.037 0.00 0.00 0.00 2.57
37 38 9.402320 TCAACTCTATATATGATCCTGCTACTC 57.598 37.037 0.00 0.00 0.00 2.59
38 39 9.407380 CAACTCTATATATGATCCTGCTACTCT 57.593 37.037 0.00 0.00 0.00 3.24
39 40 9.989296 AACTCTATATATGATCCTGCTACTCTT 57.011 33.333 0.00 0.00 0.00 2.85
40 41 9.407380 ACTCTATATATGATCCTGCTACTCTTG 57.593 37.037 0.00 0.00 0.00 3.02
42 43 9.625747 TCTATATATGATCCTGCTACTCTTGAG 57.374 37.037 0.00 0.00 0.00 3.02
44 45 1.759445 TGATCCTGCTACTCTTGAGGC 59.241 52.381 2.55 0.00 0.00 4.70
45 46 0.749649 ATCCTGCTACTCTTGAGGCG 59.250 55.000 2.55 0.00 0.00 5.52
46 47 0.612174 TCCTGCTACTCTTGAGGCGT 60.612 55.000 2.55 0.00 0.00 5.68
48 49 1.354040 CTGCTACTCTTGAGGCGTTG 58.646 55.000 2.55 0.00 0.00 4.10
51 52 1.078759 CTACTCTTGAGGCGTTGGCG 61.079 60.000 2.55 0.00 41.24 5.69
52 53 2.501223 TACTCTTGAGGCGTTGGCGG 62.501 60.000 2.55 0.00 41.24 6.13
54 55 3.423154 CTTGAGGCGTTGGCGGTC 61.423 66.667 0.00 0.00 41.24 4.79
65 66 4.796495 GGCGGTCCGGGAAGCAAT 62.796 66.667 22.03 0.00 0.00 3.56
66 67 3.508840 GCGGTCCGGGAAGCAATG 61.509 66.667 14.38 0.00 0.00 2.82
69 70 2.361104 GTCCGGGAAGCAATGGCA 60.361 61.111 0.00 0.00 44.61 4.92
70 71 2.361104 TCCGGGAAGCAATGGCAC 60.361 61.111 0.00 0.00 44.61 5.01
71 72 2.361610 CCGGGAAGCAATGGCACT 60.362 61.111 0.00 0.00 44.61 4.40
74 75 1.718757 CGGGAAGCAATGGCACTAGC 61.719 60.000 0.00 0.00 44.61 3.42
75 76 0.680921 GGGAAGCAATGGCACTAGCA 60.681 55.000 9.79 0.00 44.61 3.49
76 77 0.737219 GGAAGCAATGGCACTAGCAG 59.263 55.000 9.79 0.00 44.61 4.24
77 78 1.679944 GGAAGCAATGGCACTAGCAGA 60.680 52.381 9.79 0.00 44.61 4.26
79 80 0.107312 AGCAATGGCACTAGCAGAGG 60.107 55.000 9.79 0.00 44.61 3.69
80 81 0.107508 GCAATGGCACTAGCAGAGGA 60.108 55.000 0.00 0.00 44.61 3.71
82 83 0.543749 AATGGCACTAGCAGAGGACC 59.456 55.000 0.00 0.00 44.61 4.46
83 84 0.326048 ATGGCACTAGCAGAGGACCT 60.326 55.000 0.00 0.00 44.61 3.85
85 86 1.681486 GGCACTAGCAGAGGACCTCC 61.681 65.000 18.32 3.69 44.61 4.30
86 87 0.972983 GCACTAGCAGAGGACCTCCA 60.973 60.000 18.32 0.42 41.58 3.86
87 88 1.110442 CACTAGCAGAGGACCTCCAG 58.890 60.000 18.32 12.15 38.89 3.86
88 89 0.707616 ACTAGCAGAGGACCTCCAGT 59.292 55.000 18.32 12.81 38.89 4.00
89 90 1.077993 ACTAGCAGAGGACCTCCAGTT 59.922 52.381 18.32 11.45 38.89 3.16
91 92 1.562783 AGCAGAGGACCTCCAGTTAC 58.437 55.000 18.32 1.74 38.89 2.50
93 94 1.205893 GCAGAGGACCTCCAGTTACAG 59.794 57.143 18.32 0.00 38.89 2.74
95 96 0.537653 GAGGACCTCCAGTTACAGGC 59.462 60.000 10.74 0.00 38.89 4.85
96 97 1.218316 GGACCTCCAGTTACAGGCG 59.782 63.158 0.00 0.00 35.64 5.52
98 99 0.824759 GACCTCCAGTTACAGGCGAT 59.175 55.000 0.00 0.00 32.32 4.58
99 100 2.029623 GACCTCCAGTTACAGGCGATA 58.970 52.381 0.00 0.00 32.32 2.92
100 101 1.755380 ACCTCCAGTTACAGGCGATAC 59.245 52.381 0.00 0.00 32.32 2.24
101 102 1.754803 CCTCCAGTTACAGGCGATACA 59.245 52.381 0.00 0.00 0.00 2.29
102 103 2.481449 CCTCCAGTTACAGGCGATACAC 60.481 54.545 0.00 0.00 0.00 2.90
103 104 2.165641 CTCCAGTTACAGGCGATACACA 59.834 50.000 0.00 0.00 0.00 3.72
104 105 2.764010 TCCAGTTACAGGCGATACACAT 59.236 45.455 0.00 0.00 0.00 3.21
105 106 3.196901 TCCAGTTACAGGCGATACACATT 59.803 43.478 0.00 0.00 0.00 2.71
106 107 3.309682 CCAGTTACAGGCGATACACATTG 59.690 47.826 0.00 0.00 0.00 2.82
109 110 2.042686 ACAGGCGATACACATTGCAT 57.957 45.000 0.00 0.00 42.60 3.96
110 111 1.942657 ACAGGCGATACACATTGCATC 59.057 47.619 0.00 0.00 42.60 3.91
111 112 2.216046 CAGGCGATACACATTGCATCT 58.784 47.619 0.00 0.00 42.60 2.90
113 114 2.158914 AGGCGATACACATTGCATCTGA 60.159 45.455 3.97 0.00 42.60 3.27
114 115 2.032549 GGCGATACACATTGCATCTGAC 60.033 50.000 3.97 0.00 42.60 3.51
115 116 2.868583 GCGATACACATTGCATCTGACT 59.131 45.455 3.97 0.00 40.77 3.41
116 117 3.302935 GCGATACACATTGCATCTGACTG 60.303 47.826 3.97 0.00 40.77 3.51
124 125 1.136147 GCATCTGACTGCAAAGGCG 59.864 57.895 7.05 0.00 45.35 5.52
125 126 1.580845 GCATCTGACTGCAAAGGCGT 61.581 55.000 7.05 0.00 45.35 5.68
126 127 0.877071 CATCTGACTGCAAAGGCGTT 59.123 50.000 0.00 0.00 45.35 4.84
127 128 0.877071 ATCTGACTGCAAAGGCGTTG 59.123 50.000 8.89 8.89 45.35 4.10
128 129 0.463654 TCTGACTGCAAAGGCGTTGT 60.464 50.000 14.46 0.00 45.35 3.32
129 130 0.317269 CTGACTGCAAAGGCGTTGTG 60.317 55.000 14.46 10.12 45.35 3.33
131 132 1.444119 GACTGCAAAGGCGTTGTGGA 61.444 55.000 14.46 0.00 45.35 4.02
132 133 0.823356 ACTGCAAAGGCGTTGTGGAT 60.823 50.000 14.46 0.00 45.35 3.41
133 134 0.387622 CTGCAAAGGCGTTGTGGATG 60.388 55.000 14.46 0.00 45.35 3.51
134 135 0.821301 TGCAAAGGCGTTGTGGATGA 60.821 50.000 14.46 0.00 45.35 2.92
135 136 0.527565 GCAAAGGCGTTGTGGATGAT 59.472 50.000 14.46 0.00 39.63 2.45
136 137 1.742831 GCAAAGGCGTTGTGGATGATA 59.257 47.619 14.46 0.00 39.63 2.15
137 138 2.358898 GCAAAGGCGTTGTGGATGATAT 59.641 45.455 14.46 0.00 39.63 1.63
138 139 3.548818 GCAAAGGCGTTGTGGATGATATC 60.549 47.826 14.46 0.00 39.63 1.63
139 140 3.558931 AAGGCGTTGTGGATGATATCA 57.441 42.857 8.10 8.10 0.00 2.15
140 141 3.558931 AGGCGTTGTGGATGATATCAA 57.441 42.857 9.99 0.00 0.00 2.57
141 142 3.470709 AGGCGTTGTGGATGATATCAAG 58.529 45.455 9.99 0.00 0.00 3.02
142 143 2.031682 GGCGTTGTGGATGATATCAAGC 60.032 50.000 9.99 4.99 0.00 4.01
143 144 2.613595 GCGTTGTGGATGATATCAAGCA 59.386 45.455 9.99 3.89 0.00 3.91
144 145 3.065233 GCGTTGTGGATGATATCAAGCAA 59.935 43.478 9.99 9.47 0.00 3.91
145 146 4.438608 GCGTTGTGGATGATATCAAGCAAA 60.439 41.667 9.99 0.00 0.00 3.68
146 147 5.639757 CGTTGTGGATGATATCAAGCAAAA 58.360 37.500 9.99 0.00 0.00 2.44
147 148 5.740569 CGTTGTGGATGATATCAAGCAAAAG 59.259 40.000 9.99 6.81 0.00 2.27
148 149 6.403527 CGTTGTGGATGATATCAAGCAAAAGA 60.404 38.462 9.99 0.00 0.00 2.52
149 150 6.688637 TGTGGATGATATCAAGCAAAAGAG 57.311 37.500 9.99 0.00 0.00 2.85
150 151 6.182627 TGTGGATGATATCAAGCAAAAGAGT 58.817 36.000 9.99 0.00 0.00 3.24
151 152 7.337938 TGTGGATGATATCAAGCAAAAGAGTA 58.662 34.615 9.99 0.00 0.00 2.59
152 153 7.496920 TGTGGATGATATCAAGCAAAAGAGTAG 59.503 37.037 9.99 0.00 0.00 2.57
153 154 6.484643 TGGATGATATCAAGCAAAAGAGTAGC 59.515 38.462 9.99 0.00 0.00 3.58
154 155 6.072783 GGATGATATCAAGCAAAAGAGTAGCC 60.073 42.308 9.99 0.00 0.00 3.93
156 157 3.728385 ATCAAGCAAAAGAGTAGCCCT 57.272 42.857 0.00 0.00 0.00 5.19
157 158 4.844349 ATCAAGCAAAAGAGTAGCCCTA 57.156 40.909 0.00 0.00 0.00 3.53
158 159 4.634012 TCAAGCAAAAGAGTAGCCCTAA 57.366 40.909 0.00 0.00 0.00 2.69
159 160 4.324267 TCAAGCAAAAGAGTAGCCCTAAC 58.676 43.478 0.00 0.00 0.00 2.34
160 161 4.041691 TCAAGCAAAAGAGTAGCCCTAACT 59.958 41.667 0.00 0.00 0.00 2.24
161 162 5.247564 TCAAGCAAAAGAGTAGCCCTAACTA 59.752 40.000 0.00 0.00 0.00 2.24
162 163 5.959583 AGCAAAAGAGTAGCCCTAACTAT 57.040 39.130 0.00 0.00 0.00 2.12
163 164 5.675538 AGCAAAAGAGTAGCCCTAACTATG 58.324 41.667 0.00 0.00 0.00 2.23
164 165 4.816925 GCAAAAGAGTAGCCCTAACTATGG 59.183 45.833 0.00 0.00 0.00 2.74
175 176 5.104259 CCCTAACTATGGGGCTATCATTC 57.896 47.826 0.00 0.00 40.96 2.67
176 177 4.383118 CCCTAACTATGGGGCTATCATTCG 60.383 50.000 0.00 0.00 40.96 3.34
177 178 4.223032 CCTAACTATGGGGCTATCATTCGT 59.777 45.833 0.00 0.00 0.00 3.85
178 179 3.685139 ACTATGGGGCTATCATTCGTG 57.315 47.619 0.00 0.00 0.00 4.35
180 181 2.847327 ATGGGGCTATCATTCGTGAG 57.153 50.000 0.00 0.00 0.00 3.51
182 183 2.329267 TGGGGCTATCATTCGTGAGAT 58.671 47.619 0.00 0.00 41.60 2.75
183 184 2.300152 TGGGGCTATCATTCGTGAGATC 59.700 50.000 0.00 0.00 41.60 2.75
185 186 2.029828 GGGCTATCATTCGTGAGATCGT 60.030 50.000 0.00 0.00 41.60 3.73
186 187 3.553096 GGGCTATCATTCGTGAGATCGTT 60.553 47.826 0.00 0.00 41.60 3.85
187 188 3.426859 GGCTATCATTCGTGAGATCGTTG 59.573 47.826 0.00 0.00 41.60 4.10
188 189 4.290969 GCTATCATTCGTGAGATCGTTGA 58.709 43.478 0.00 0.00 41.60 3.18
189 190 4.740205 GCTATCATTCGTGAGATCGTTGAA 59.260 41.667 0.00 0.00 41.60 2.69
190 191 5.403766 GCTATCATTCGTGAGATCGTTGAAT 59.596 40.000 0.00 0.00 41.60 2.57
192 193 6.755461 ATCATTCGTGAGATCGTTGAATAC 57.245 37.500 5.58 0.00 41.60 1.89
194 195 5.971792 TCATTCGTGAGATCGTTGAATACTC 59.028 40.000 5.58 0.00 41.60 2.59
195 196 5.562506 TTCGTGAGATCGTTGAATACTCT 57.437 39.130 0.00 0.00 41.60 3.24
197 198 5.332707 TCGTGAGATCGTTGAATACTCTTG 58.667 41.667 0.00 0.00 33.31 3.02
198 199 5.096169 CGTGAGATCGTTGAATACTCTTGT 58.904 41.667 0.00 0.00 0.00 3.16
199 200 6.093082 TCGTGAGATCGTTGAATACTCTTGTA 59.907 38.462 0.00 0.00 33.31 2.41
200 201 6.412362 CGTGAGATCGTTGAATACTCTTGTAG 59.588 42.308 0.00 0.00 31.51 2.74
201 202 7.251994 GTGAGATCGTTGAATACTCTTGTAGT 58.748 38.462 0.00 0.00 42.62 2.73
203 204 8.304596 TGAGATCGTTGAATACTCTTGTAGTTT 58.695 33.333 0.00 0.00 39.80 2.66
204 205 9.141400 GAGATCGTTGAATACTCTTGTAGTTTT 57.859 33.333 0.00 0.00 39.80 2.43
205 206 9.141400 AGATCGTTGAATACTCTTGTAGTTTTC 57.859 33.333 0.00 0.00 42.95 2.29
226 227 9.796062 GTTTTCAGTTATGTAATTTTGTGCATG 57.204 29.630 0.00 0.00 0.00 4.06
227 228 9.755804 TTTTCAGTTATGTAATTTTGTGCATGA 57.244 25.926 0.00 0.00 0.00 3.07
228 229 8.969121 TTCAGTTATGTAATTTTGTGCATGAG 57.031 30.769 0.00 0.00 0.00 2.90
230 231 8.575589 TCAGTTATGTAATTTTGTGCATGAGTT 58.424 29.630 0.00 0.00 0.00 3.01
231 232 9.195411 CAGTTATGTAATTTTGTGCATGAGTTT 57.805 29.630 0.00 0.00 0.00 2.66
234 235 9.853555 TTATGTAATTTTGTGCATGAGTTTAGG 57.146 29.630 0.00 0.00 0.00 2.69
236 237 7.592938 TGTAATTTTGTGCATGAGTTTAGGAG 58.407 34.615 0.00 0.00 0.00 3.69
238 239 3.423539 TTGTGCATGAGTTTAGGAGCT 57.576 42.857 0.00 0.00 0.00 4.09
239 240 2.977914 TGTGCATGAGTTTAGGAGCTC 58.022 47.619 4.71 4.71 34.08 4.09
240 241 1.929836 GTGCATGAGTTTAGGAGCTCG 59.070 52.381 7.83 0.00 36.04 5.03
241 242 1.824852 TGCATGAGTTTAGGAGCTCGA 59.175 47.619 7.83 0.00 36.04 4.04
242 243 2.233676 TGCATGAGTTTAGGAGCTCGAA 59.766 45.455 7.83 1.24 36.04 3.71
243 244 3.118629 TGCATGAGTTTAGGAGCTCGAAT 60.119 43.478 7.83 0.00 36.04 3.34
244 245 3.247173 GCATGAGTTTAGGAGCTCGAATG 59.753 47.826 7.83 3.85 36.04 2.67
259 260 3.902150 TCGAATGTCGAGGCTCATAATC 58.098 45.455 15.95 4.93 44.82 1.75
260 261 3.570125 TCGAATGTCGAGGCTCATAATCT 59.430 43.478 15.95 0.00 44.82 2.40
261 262 3.672397 CGAATGTCGAGGCTCATAATCTG 59.328 47.826 15.95 0.00 43.74 2.90
262 263 2.515926 TGTCGAGGCTCATAATCTGC 57.484 50.000 15.95 0.00 0.00 4.26
264 265 1.001268 GTCGAGGCTCATAATCTGCGA 60.001 52.381 15.95 0.00 0.00 5.10
265 266 1.681264 TCGAGGCTCATAATCTGCGAA 59.319 47.619 15.95 0.00 0.00 4.70
266 267 2.057316 CGAGGCTCATAATCTGCGAAG 58.943 52.381 15.95 0.00 0.00 3.79
285 286 4.215399 CGAAGCATGTTTTGAAACTAGGGA 59.785 41.667 3.51 0.00 39.59 4.20
286 287 5.106157 CGAAGCATGTTTTGAAACTAGGGAT 60.106 40.000 3.51 0.00 39.59 3.85
289 290 5.047092 AGCATGTTTTGAAACTAGGGATTGG 60.047 40.000 7.97 0.00 39.59 3.16
290 291 4.864704 TGTTTTGAAACTAGGGATTGGC 57.135 40.909 7.97 0.00 39.59 4.52
292 293 3.534357 TTTGAAACTAGGGATTGGCCA 57.466 42.857 0.00 0.00 38.95 5.36
293 294 3.756082 TTGAAACTAGGGATTGGCCAT 57.244 42.857 6.09 0.00 38.95 4.40
296 297 3.205056 TGAAACTAGGGATTGGCCATCAT 59.795 43.478 6.09 0.00 38.95 2.45
297 298 2.965671 ACTAGGGATTGGCCATCATG 57.034 50.000 6.09 0.00 38.95 3.07
298 299 2.138542 ACTAGGGATTGGCCATCATGT 58.861 47.619 6.09 0.00 38.95 3.21
300 301 2.555732 AGGGATTGGCCATCATGTTT 57.444 45.000 6.09 0.00 38.95 2.83
303 304 1.832998 GGATTGGCCATCATGTTTGGT 59.167 47.619 6.09 0.40 36.57 3.67
304 305 2.236893 GGATTGGCCATCATGTTTGGTT 59.763 45.455 6.09 3.16 36.57 3.67
305 306 2.835580 TTGGCCATCATGTTTGGTTG 57.164 45.000 6.09 0.00 36.57 3.77
306 307 0.975135 TGGCCATCATGTTTGGTTGG 59.025 50.000 0.00 6.35 36.57 3.77
307 308 0.249955 GGCCATCATGTTTGGTTGGG 59.750 55.000 15.67 0.00 36.57 4.12
308 309 0.391528 GCCATCATGTTTGGTTGGGC 60.392 55.000 15.67 0.00 36.57 5.36
309 310 0.975135 CCATCATGTTTGGTTGGGCA 59.025 50.000 8.69 0.00 0.00 5.36
311 312 2.415776 CATCATGTTTGGTTGGGCAAC 58.584 47.619 0.00 0.00 40.45 4.17
324 325 2.341452 GGCAACCCTGGTGAACTTC 58.659 57.895 0.00 0.00 0.00 3.01
325 326 0.467290 GGCAACCCTGGTGAACTTCA 60.467 55.000 0.00 0.00 0.00 3.02
327 328 1.750682 GCAACCCTGGTGAACTTCAGT 60.751 52.381 0.00 0.00 0.00 3.41
328 329 2.654863 CAACCCTGGTGAACTTCAGTT 58.345 47.619 0.00 0.00 41.64 3.16
342 343 4.850680 ACTTCAGTTCAACCCTGTAAACA 58.149 39.130 0.00 0.00 0.00 2.83
343 344 5.445964 ACTTCAGTTCAACCCTGTAAACAT 58.554 37.500 0.00 0.00 0.00 2.71
344 345 5.891551 ACTTCAGTTCAACCCTGTAAACATT 59.108 36.000 0.00 0.00 0.00 2.71
345 346 5.766150 TCAGTTCAACCCTGTAAACATTG 57.234 39.130 0.00 0.00 0.00 2.82
346 347 5.197451 TCAGTTCAACCCTGTAAACATTGT 58.803 37.500 0.00 0.00 0.00 2.71
347 348 5.067153 TCAGTTCAACCCTGTAAACATTGTG 59.933 40.000 0.00 0.00 0.00 3.33
348 349 5.067153 CAGTTCAACCCTGTAAACATTGTGA 59.933 40.000 0.00 0.00 0.00 3.58
350 351 3.562141 TCAACCCTGTAAACATTGTGACG 59.438 43.478 0.00 0.00 0.00 4.35
351 352 3.478857 ACCCTGTAAACATTGTGACGA 57.521 42.857 0.00 0.00 0.00 4.20
352 353 3.399330 ACCCTGTAAACATTGTGACGAG 58.601 45.455 0.00 0.00 0.00 4.18
353 354 3.181458 ACCCTGTAAACATTGTGACGAGT 60.181 43.478 0.00 0.00 0.00 4.18
354 355 3.186409 CCCTGTAAACATTGTGACGAGTG 59.814 47.826 0.00 0.00 0.00 3.51
356 357 4.509970 CCTGTAAACATTGTGACGAGTGAA 59.490 41.667 0.00 0.00 0.00 3.18
357 358 5.179368 CCTGTAAACATTGTGACGAGTGAAT 59.821 40.000 0.00 0.00 0.00 2.57
358 359 6.367695 CCTGTAAACATTGTGACGAGTGAATA 59.632 38.462 0.00 0.00 0.00 1.75
359 360 7.095397 CCTGTAAACATTGTGACGAGTGAATAA 60.095 37.037 0.00 0.00 0.00 1.40
360 361 8.144155 TGTAAACATTGTGACGAGTGAATAAA 57.856 30.769 0.00 0.00 0.00 1.40
362 363 9.440784 GTAAACATTGTGACGAGTGAATAAAAA 57.559 29.630 0.00 0.00 0.00 1.94
363 364 8.560576 AAACATTGTGACGAGTGAATAAAAAG 57.439 30.769 0.00 0.00 0.00 2.27
364 365 6.142817 ACATTGTGACGAGTGAATAAAAAGC 58.857 36.000 0.00 0.00 0.00 3.51
365 366 6.017109 ACATTGTGACGAGTGAATAAAAAGCT 60.017 34.615 0.00 0.00 0.00 3.74
366 367 6.371809 TTGTGACGAGTGAATAAAAAGCTT 57.628 33.333 0.00 0.00 0.00 3.74
367 368 5.985781 TGTGACGAGTGAATAAAAAGCTTC 58.014 37.500 0.00 0.00 0.00 3.86
368 369 5.525745 TGTGACGAGTGAATAAAAAGCTTCA 59.474 36.000 0.00 0.00 0.00 3.02
369 370 6.204688 TGTGACGAGTGAATAAAAAGCTTCAT 59.795 34.615 0.00 0.00 0.00 2.57
372 373 5.705441 ACGAGTGAATAAAAAGCTTCATGGA 59.295 36.000 0.00 0.00 0.00 3.41
373 374 6.375455 ACGAGTGAATAAAAAGCTTCATGGAT 59.625 34.615 0.00 0.00 0.00 3.41
374 375 7.094205 ACGAGTGAATAAAAAGCTTCATGGATT 60.094 33.333 0.00 0.00 0.00 3.01
375 376 7.219535 CGAGTGAATAAAAAGCTTCATGGATTG 59.780 37.037 0.00 0.00 0.00 2.67
376 377 7.899973 AGTGAATAAAAAGCTTCATGGATTGT 58.100 30.769 0.00 0.00 0.00 2.71
378 379 8.031277 GTGAATAAAAAGCTTCATGGATTGTCT 58.969 33.333 0.00 0.00 0.00 3.41
379 380 9.241919 TGAATAAAAAGCTTCATGGATTGTCTA 57.758 29.630 0.00 0.00 0.00 2.59
406 407 3.697619 AGTACTTAAGCCCAGAACACC 57.302 47.619 1.29 0.00 0.00 4.16
408 409 4.422984 AGTACTTAAGCCCAGAACACCTA 58.577 43.478 1.29 0.00 0.00 3.08
410 411 3.517612 ACTTAAGCCCAGAACACCTAGA 58.482 45.455 1.29 0.00 0.00 2.43
411 412 3.515901 ACTTAAGCCCAGAACACCTAGAG 59.484 47.826 1.29 0.00 0.00 2.43
412 413 2.327325 AAGCCCAGAACACCTAGAGA 57.673 50.000 0.00 0.00 0.00 3.10
413 414 2.327325 AGCCCAGAACACCTAGAGAA 57.673 50.000 0.00 0.00 0.00 2.87
414 415 2.183679 AGCCCAGAACACCTAGAGAAG 58.816 52.381 0.00 0.00 0.00 2.85
415 416 2.180276 GCCCAGAACACCTAGAGAAGA 58.820 52.381 0.00 0.00 0.00 2.87
416 417 2.167487 GCCCAGAACACCTAGAGAAGAG 59.833 54.545 0.00 0.00 0.00 2.85
417 418 2.763448 CCCAGAACACCTAGAGAAGAGG 59.237 54.545 0.00 0.00 40.22 3.69
418 419 3.564571 CCCAGAACACCTAGAGAAGAGGA 60.565 52.174 0.00 0.00 37.53 3.71
421 422 3.076182 AGAACACCTAGAGAAGAGGACCA 59.924 47.826 0.00 0.00 37.53 4.02
423 424 3.858135 ACACCTAGAGAAGAGGACCAAA 58.142 45.455 0.00 0.00 37.53 3.28
424 425 3.835395 ACACCTAGAGAAGAGGACCAAAG 59.165 47.826 0.00 0.00 37.53 2.77
426 427 3.835395 ACCTAGAGAAGAGGACCAAAGTG 59.165 47.826 0.00 0.00 37.53 3.16
428 429 1.349357 AGAGAAGAGGACCAAAGTGGC 59.651 52.381 0.00 0.00 42.67 5.01
429 430 1.072331 GAGAAGAGGACCAAAGTGGCA 59.928 52.381 0.00 0.00 42.67 4.92
430 431 1.494721 AGAAGAGGACCAAAGTGGCAA 59.505 47.619 0.00 0.00 42.67 4.52
465 2582 7.718314 TCCTTTACCTTTTTCCTGTACTCTTTC 59.282 37.037 0.00 0.00 0.00 2.62
480 2597 0.686112 CTTTCTCCTCCCTCGGCTCT 60.686 60.000 0.00 0.00 0.00 4.09
492 2609 0.469917 TCGGCTCTCAATCCCCATTC 59.530 55.000 0.00 0.00 0.00 2.67
513 2630 2.352421 CCATTGCTTGCTTCTTCACCAG 60.352 50.000 0.00 0.00 0.00 4.00
530 2647 2.445525 ACCAGGTTGTACCCAGATTTGT 59.554 45.455 0.00 0.00 39.75 2.83
544 2661 5.455392 CCAGATTTGTCACAATTGAGTGTC 58.545 41.667 13.59 0.00 40.37 3.67
573 2690 0.179240 GCAATGAGTTGAGCGTGACG 60.179 55.000 0.00 0.00 37.53 4.35
575 2692 1.291877 AATGAGTTGAGCGTGACGGC 61.292 55.000 7.25 0.00 0.00 5.68
587 2708 6.263344 TGAGCGTGACGGCTTATATATATTC 58.737 40.000 7.25 0.00 44.93 1.75
588 2709 5.271625 AGCGTGACGGCTTATATATATTCG 58.728 41.667 7.25 3.77 41.39 3.34
589 2710 4.085721 GCGTGACGGCTTATATATATTCGC 60.086 45.833 7.25 4.23 0.00 4.70
590 2711 5.032220 CGTGACGGCTTATATATATTCGCA 58.968 41.667 14.24 8.24 0.00 5.10
591 2712 5.513849 CGTGACGGCTTATATATATTCGCAA 59.486 40.000 14.24 0.00 0.00 4.85
592 2713 6.034150 CGTGACGGCTTATATATATTCGCAAA 59.966 38.462 14.24 0.00 0.00 3.68
620 3068 5.786401 AAAGCTTCTTTATGTGCGAGTAG 57.214 39.130 0.00 0.00 0.00 2.57
705 3157 4.980805 GTGTCAGGCCGGTTGCGA 62.981 66.667 1.90 0.00 42.61 5.10
738 3190 4.832608 AGTTTCCGCCGGCCGATC 62.833 66.667 30.73 17.21 40.02 3.69
784 3236 1.508539 CGTCGTCGTCGTCGTCAAT 60.509 57.895 12.51 0.00 41.73 2.57
792 3244 1.124297 CGTCGTCGTCAATTCCAACAG 59.876 52.381 0.00 0.00 0.00 3.16
832 3284 4.200874 ACAGTCCATTGTTACCACGAAAA 58.799 39.130 0.00 0.00 0.00 2.29
833 3285 4.825085 ACAGTCCATTGTTACCACGAAAAT 59.175 37.500 0.00 0.00 0.00 1.82
857 3310 2.664851 CGGACGAAACTGCCTGCA 60.665 61.111 0.00 0.00 0.00 4.41
967 3473 9.455847 CGGTACTATCCTTACTAATTGTAACAC 57.544 37.037 0.00 0.00 36.33 3.32
1006 3518 2.041620 AGCAAAGAAGTAGCAATGGGGA 59.958 45.455 0.00 0.00 0.00 4.81
1009 3521 4.335416 CAAAGAAGTAGCAATGGGGAAGA 58.665 43.478 0.00 0.00 0.00 2.87
1011 3523 4.429854 AGAAGTAGCAATGGGGAAGATC 57.570 45.455 0.00 0.00 0.00 2.75
1023 3535 0.526524 GGAAGATCGGTGCTGAGTCG 60.527 60.000 0.00 0.00 0.00 4.18
1146 3658 5.824429 GGTACGTACATGCATACTAGTTCA 58.176 41.667 26.02 0.00 0.00 3.18
1148 3660 6.417044 GGTACGTACATGCATACTAGTTCAAG 59.583 42.308 26.02 0.00 0.00 3.02
1149 3661 5.348986 ACGTACATGCATACTAGTTCAAGG 58.651 41.667 0.00 0.00 0.00 3.61
1150 3662 4.745125 CGTACATGCATACTAGTTCAAGGG 59.255 45.833 0.00 0.00 0.00 3.95
1160 3675 0.846870 AGTTCAAGGGAAGGGAGGGG 60.847 60.000 0.00 0.00 32.62 4.79
1406 3932 4.143333 TACCTCGGCCGCTTCTGC 62.143 66.667 23.51 0.00 0.00 4.26
1721 4319 2.879462 GCGTCGTCCGTGATGGTC 60.879 66.667 0.00 0.00 39.52 4.02
2003 4607 1.118965 TCAGGTTCCTCGACAAGGCA 61.119 55.000 0.00 0.00 45.78 4.75
2744 5348 4.093011 ACTACTTCTTCTGGCTGATGACT 58.907 43.478 9.07 2.04 0.00 3.41
2848 5452 1.069378 CCGGACGTCAACGAAGTAGC 61.069 60.000 18.91 0.00 45.00 3.58
2853 5457 3.181503 GGACGTCAACGAAGTAGCTGATA 60.182 47.826 18.91 0.00 45.00 2.15
2854 5458 4.409570 GACGTCAACGAAGTAGCTGATAA 58.590 43.478 11.55 0.00 45.00 1.75
2857 5461 5.867716 ACGTCAACGAAGTAGCTGATAATTT 59.132 36.000 9.88 0.00 45.00 1.82
2861 5465 6.312918 TCAACGAAGTAGCTGATAATTTGACC 59.687 38.462 7.30 0.00 45.00 4.02
2862 5466 5.730550 ACGAAGTAGCTGATAATTTGACCA 58.269 37.500 7.30 0.00 41.94 4.02
2865 5469 4.442706 AGTAGCTGATAATTTGACCACCG 58.557 43.478 0.00 0.00 0.00 4.94
2866 5470 2.643551 AGCTGATAATTTGACCACCGG 58.356 47.619 0.00 0.00 0.00 5.28
2867 5471 2.238646 AGCTGATAATTTGACCACCGGA 59.761 45.455 9.46 0.00 0.00 5.14
2868 5472 2.614057 GCTGATAATTTGACCACCGGAG 59.386 50.000 9.46 0.00 0.00 4.63
2869 5473 2.614057 CTGATAATTTGACCACCGGAGC 59.386 50.000 9.46 0.00 0.00 4.70
2870 5474 2.238646 TGATAATTTGACCACCGGAGCT 59.761 45.455 9.46 0.00 0.00 4.09
2905 5509 2.508663 GGACGCCAACGGAGTAGC 60.509 66.667 0.00 0.00 45.00 3.58
2922 5526 1.521457 GCTGATGATTCGACCGCCA 60.521 57.895 0.00 0.00 0.00 5.69
3076 5680 7.867403 TGTTGAAATGTCCTTGAAAATAAGAGC 59.133 33.333 0.00 0.00 0.00 4.09
3105 5709 8.462016 AGGAAAAAGGAAATCGTGAATATTCAG 58.538 33.333 18.47 12.30 37.98 3.02
3137 5745 3.728076 TCGTAAAAGGATCCGGATCTG 57.272 47.619 36.72 20.30 37.92 2.90
3140 5748 4.831155 TCGTAAAAGGATCCGGATCTGTAT 59.169 41.667 36.72 24.62 37.92 2.29
3142 5750 5.989777 CGTAAAAGGATCCGGATCTGTATTT 59.010 40.000 36.72 29.97 37.92 1.40
3167 5775 5.673514 AGATTCACCAAAAGTGCAAAACAT 58.326 33.333 0.00 0.00 46.81 2.71
3226 5834 2.110213 GAACCACCACTGTCGCCA 59.890 61.111 0.00 0.00 0.00 5.69
3242 5850 0.037232 GCCACCGACTTGCTACTCTT 60.037 55.000 0.00 0.00 0.00 2.85
3322 5930 2.018355 TGTGCACCTAAGGACTACCA 57.982 50.000 15.69 0.00 38.94 3.25
3339 5947 2.915659 ACCTCGGAGCCACGTTCA 60.916 61.111 0.00 0.00 34.94 3.18
3374 6007 5.878332 TGACATGTTTTAGCATCGTCAAT 57.122 34.783 0.00 0.00 35.79 2.57
3617 6262 9.796120 ATTCATTCACGTACTTTTCTTTTCAAA 57.204 25.926 0.00 0.00 0.00 2.69
3618 6263 9.627395 TTCATTCACGTACTTTTCTTTTCAAAA 57.373 25.926 0.00 0.00 0.00 2.44
3620 6265 9.885743 CATTCACGTACTTTTCTTTTCAAAAAG 57.114 29.630 8.60 8.60 45.15 2.27
3621 6266 8.455598 TTCACGTACTTTTCTTTTCAAAAAGG 57.544 30.769 13.68 2.59 44.36 3.11
3622 6267 7.818642 TCACGTACTTTTCTTTTCAAAAAGGA 58.181 30.769 13.68 4.01 44.36 3.36
3623 6268 7.751793 TCACGTACTTTTCTTTTCAAAAAGGAC 59.248 33.333 13.68 11.82 46.87 3.85
3627 6272 9.634163 GTACTTTTCTTTTCAAAAAGGACTTGA 57.366 29.630 13.78 0.00 46.83 3.02
3628 6273 8.763049 ACTTTTCTTTTCAAAAAGGACTTGAG 57.237 30.769 13.68 5.19 44.36 3.02
3649 6294 7.962964 TGAGTCTGTTACAAAGATTAACCAG 57.037 36.000 0.00 0.00 0.00 4.00
3675 6320 2.384382 CAAAACACCTTAAGCGCACTG 58.616 47.619 11.47 0.00 0.00 3.66
3686 6331 1.730547 GCGCACTGCACCAACATTC 60.731 57.895 0.30 0.00 45.45 2.67
3694 6339 4.992319 CACTGCACCAACATTCATTTCAAT 59.008 37.500 0.00 0.00 0.00 2.57
3801 6447 8.394121 TGTTTCAAATTGCCAAACATTAGTTTC 58.606 29.630 8.35 0.00 45.80 2.78
3808 6454 6.072112 TGCCAAACATTAGTTTCAGAAGAC 57.928 37.500 0.00 0.00 45.80 3.01
3809 6455 5.009610 TGCCAAACATTAGTTTCAGAAGACC 59.990 40.000 0.00 0.00 45.80 3.85
3810 6456 5.241728 GCCAAACATTAGTTTCAGAAGACCT 59.758 40.000 0.00 0.00 45.80 3.85
3811 6457 6.430000 GCCAAACATTAGTTTCAGAAGACCTA 59.570 38.462 0.00 0.00 45.80 3.08
3812 6458 7.040686 GCCAAACATTAGTTTCAGAAGACCTAA 60.041 37.037 0.00 3.03 45.80 2.69
3813 6459 8.846211 CCAAACATTAGTTTCAGAAGACCTAAA 58.154 33.333 0.00 0.00 45.80 1.85
3824 6470 9.547753 TTTCAGAAGACCTAAATATGTGATAGC 57.452 33.333 0.00 0.00 0.00 2.97
3825 6471 8.484214 TCAGAAGACCTAAATATGTGATAGCT 57.516 34.615 0.00 0.00 0.00 3.32
3826 6472 9.588096 TCAGAAGACCTAAATATGTGATAGCTA 57.412 33.333 0.00 0.00 0.00 3.32
3827 6473 9.632807 CAGAAGACCTAAATATGTGATAGCTAC 57.367 37.037 0.00 0.00 0.00 3.58
3828 6474 8.808092 AGAAGACCTAAATATGTGATAGCTACC 58.192 37.037 0.00 0.00 0.00 3.18
3829 6475 8.492415 AAGACCTAAATATGTGATAGCTACCA 57.508 34.615 0.00 0.00 0.00 3.25
3974 6622 8.960591 CCTAGAATGTGGTCATCTGTAATTTTT 58.039 33.333 0.00 0.00 32.56 1.94
3991 6639 7.604927 TGTAATTTTTGGCGTCTACTAGATGTT 59.395 33.333 0.00 0.00 33.82 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.531982 TCATATATAGAGTTGACCACAATAGCC 58.468 37.037 0.00 0.00 38.32 3.93
4 5 9.331466 AGGATCATATATAGAGTTGACCACAAT 57.669 33.333 0.00 0.00 38.32 2.71
6 7 7.310052 GCAGGATCATATATAGAGTTGACCACA 60.310 40.741 0.00 0.00 0.00 4.17
7 8 7.038659 GCAGGATCATATATAGAGTTGACCAC 58.961 42.308 0.00 0.00 0.00 4.16
9 10 7.416964 AGCAGGATCATATATAGAGTTGACC 57.583 40.000 0.00 0.00 0.00 4.02
10 11 9.184523 AGTAGCAGGATCATATATAGAGTTGAC 57.815 37.037 0.00 0.00 0.00 3.18
12 13 9.407380 AGAGTAGCAGGATCATATATAGAGTTG 57.593 37.037 0.00 0.00 0.00 3.16
13 14 9.989296 AAGAGTAGCAGGATCATATATAGAGTT 57.011 33.333 0.00 0.00 0.00 3.01
14 15 9.407380 CAAGAGTAGCAGGATCATATATAGAGT 57.593 37.037 0.00 0.00 0.00 3.24
15 16 9.625747 TCAAGAGTAGCAGGATCATATATAGAG 57.374 37.037 0.00 0.00 0.00 2.43
16 17 9.625747 CTCAAGAGTAGCAGGATCATATATAGA 57.374 37.037 0.00 0.00 0.00 1.98
18 19 7.286546 GCCTCAAGAGTAGCAGGATCATATATA 59.713 40.741 0.00 0.00 0.00 0.86
20 21 5.420421 GCCTCAAGAGTAGCAGGATCATATA 59.580 44.000 0.00 0.00 0.00 0.86
22 23 3.576118 GCCTCAAGAGTAGCAGGATCATA 59.424 47.826 0.00 0.00 0.00 2.15
23 24 2.368221 GCCTCAAGAGTAGCAGGATCAT 59.632 50.000 0.00 0.00 0.00 2.45
26 27 0.749649 CGCCTCAAGAGTAGCAGGAT 59.250 55.000 0.00 0.00 0.00 3.24
31 32 1.362406 GCCAACGCCTCAAGAGTAGC 61.362 60.000 0.00 0.00 0.00 3.58
32 33 1.078759 CGCCAACGCCTCAAGAGTAG 61.079 60.000 0.00 0.00 0.00 2.57
33 34 1.080093 CGCCAACGCCTCAAGAGTA 60.080 57.895 0.00 0.00 0.00 2.59
35 36 3.121030 CCGCCAACGCCTCAAGAG 61.121 66.667 0.00 0.00 38.22 2.85
36 37 3.876589 GACCGCCAACGCCTCAAGA 62.877 63.158 0.00 0.00 38.22 3.02
37 38 3.423154 GACCGCCAACGCCTCAAG 61.423 66.667 0.00 0.00 38.22 3.02
48 49 4.796495 ATTGCTTCCCGGACCGCC 62.796 66.667 8.86 0.00 0.00 6.13
51 52 3.140814 GCCATTGCTTCCCGGACC 61.141 66.667 0.73 0.00 33.53 4.46
52 53 2.361104 TGCCATTGCTTCCCGGAC 60.361 61.111 0.73 0.00 38.71 4.79
54 55 1.077787 TAGTGCCATTGCTTCCCGG 60.078 57.895 0.00 0.00 38.71 5.73
55 56 1.718757 GCTAGTGCCATTGCTTCCCG 61.719 60.000 0.00 0.00 38.71 5.14
60 61 0.107312 CCTCTGCTAGTGCCATTGCT 60.107 55.000 0.00 0.00 38.71 3.91
62 63 1.661341 GTCCTCTGCTAGTGCCATTG 58.339 55.000 0.00 0.00 38.71 2.82
63 64 0.543749 GGTCCTCTGCTAGTGCCATT 59.456 55.000 0.00 0.00 38.71 3.16
64 65 0.326048 AGGTCCTCTGCTAGTGCCAT 60.326 55.000 0.00 0.00 38.71 4.40
65 66 0.972983 GAGGTCCTCTGCTAGTGCCA 60.973 60.000 12.02 0.00 38.71 4.92
66 67 1.681486 GGAGGTCCTCTGCTAGTGCC 61.681 65.000 18.58 0.00 38.71 5.01
69 70 0.707616 ACTGGAGGTCCTCTGCTAGT 59.292 55.000 18.58 13.89 36.82 2.57
70 71 1.859302 AACTGGAGGTCCTCTGCTAG 58.141 55.000 18.58 13.33 36.82 3.42
71 72 2.042569 TGTAACTGGAGGTCCTCTGCTA 59.957 50.000 18.58 5.37 36.82 3.49
74 75 1.827969 CCTGTAACTGGAGGTCCTCTG 59.172 57.143 18.58 13.57 36.82 3.35
75 76 1.897647 GCCTGTAACTGGAGGTCCTCT 60.898 57.143 18.58 1.14 36.82 3.69
76 77 0.537653 GCCTGTAACTGGAGGTCCTC 59.462 60.000 10.78 10.78 36.82 3.71
77 78 1.258445 CGCCTGTAACTGGAGGTCCT 61.258 60.000 0.00 0.00 36.82 3.85
79 80 0.824759 ATCGCCTGTAACTGGAGGTC 59.175 55.000 0.00 0.00 0.00 3.85
80 81 1.755380 GTATCGCCTGTAACTGGAGGT 59.245 52.381 0.00 0.00 0.00 3.85
82 83 2.165641 TGTGTATCGCCTGTAACTGGAG 59.834 50.000 0.00 0.00 0.00 3.86
83 84 2.172679 TGTGTATCGCCTGTAACTGGA 58.827 47.619 0.00 0.00 0.00 3.86
85 86 3.242413 GCAATGTGTATCGCCTGTAACTG 60.242 47.826 0.00 0.00 0.00 3.16
86 87 2.936498 GCAATGTGTATCGCCTGTAACT 59.064 45.455 0.00 0.00 0.00 2.24
87 88 2.675844 TGCAATGTGTATCGCCTGTAAC 59.324 45.455 0.00 0.00 0.00 2.50
88 89 2.979240 TGCAATGTGTATCGCCTGTAA 58.021 42.857 0.00 0.00 0.00 2.41
89 90 2.682155 TGCAATGTGTATCGCCTGTA 57.318 45.000 0.00 0.00 0.00 2.74
91 92 2.032290 CAGATGCAATGTGTATCGCCTG 60.032 50.000 0.00 0.00 43.02 4.85
93 94 2.032549 GTCAGATGCAATGTGTATCGCC 60.033 50.000 0.00 0.00 43.02 5.54
95 96 3.302935 GCAGTCAGATGCAATGTGTATCG 60.303 47.826 0.00 0.00 43.02 2.92
96 97 4.206698 GCAGTCAGATGCAATGTGTATC 57.793 45.455 0.00 0.00 45.77 2.24
106 107 1.136147 CGCCTTTGCAGTCAGATGC 59.864 57.895 0.00 0.00 46.68 3.91
109 110 0.463654 ACAACGCCTTTGCAGTCAGA 60.464 50.000 0.00 0.00 39.01 3.27
110 111 0.317269 CACAACGCCTTTGCAGTCAG 60.317 55.000 0.00 0.00 39.01 3.51
111 112 1.723608 CCACAACGCCTTTGCAGTCA 61.724 55.000 0.00 0.00 39.01 3.41
113 114 0.823356 ATCCACAACGCCTTTGCAGT 60.823 50.000 0.00 0.00 39.01 4.40
114 115 0.387622 CATCCACAACGCCTTTGCAG 60.388 55.000 0.00 0.00 39.01 4.41
115 116 0.821301 TCATCCACAACGCCTTTGCA 60.821 50.000 0.00 0.00 39.01 4.08
116 117 0.527565 ATCATCCACAACGCCTTTGC 59.472 50.000 0.00 0.00 39.01 3.68
118 119 3.884895 TGATATCATCCACAACGCCTTT 58.115 40.909 0.00 0.00 0.00 3.11
119 120 3.558931 TGATATCATCCACAACGCCTT 57.441 42.857 0.00 0.00 0.00 4.35
120 121 3.470709 CTTGATATCATCCACAACGCCT 58.529 45.455 6.17 0.00 0.00 5.52
121 122 2.031682 GCTTGATATCATCCACAACGCC 60.032 50.000 6.17 0.00 0.00 5.68
122 123 2.613595 TGCTTGATATCATCCACAACGC 59.386 45.455 6.17 1.01 0.00 4.84
123 124 4.880886 TTGCTTGATATCATCCACAACG 57.119 40.909 6.17 0.00 0.00 4.10
124 125 6.855836 TCTTTTGCTTGATATCATCCACAAC 58.144 36.000 6.17 0.00 0.00 3.32
125 126 6.660521 ACTCTTTTGCTTGATATCATCCACAA 59.339 34.615 6.17 6.23 0.00 3.33
126 127 6.182627 ACTCTTTTGCTTGATATCATCCACA 58.817 36.000 6.17 0.06 0.00 4.17
127 128 6.690194 ACTCTTTTGCTTGATATCATCCAC 57.310 37.500 6.17 0.00 0.00 4.02
128 129 6.484643 GCTACTCTTTTGCTTGATATCATCCA 59.515 38.462 6.17 4.07 0.00 3.41
129 130 6.072783 GGCTACTCTTTTGCTTGATATCATCC 60.073 42.308 6.17 1.33 0.00 3.51
131 132 5.767168 GGGCTACTCTTTTGCTTGATATCAT 59.233 40.000 6.17 0.00 0.00 2.45
132 133 5.104360 AGGGCTACTCTTTTGCTTGATATCA 60.104 40.000 0.00 0.00 0.00 2.15
133 134 5.372373 AGGGCTACTCTTTTGCTTGATATC 58.628 41.667 0.00 0.00 0.00 1.63
134 135 5.379706 AGGGCTACTCTTTTGCTTGATAT 57.620 39.130 0.00 0.00 0.00 1.63
135 136 4.844349 AGGGCTACTCTTTTGCTTGATA 57.156 40.909 0.00 0.00 0.00 2.15
136 137 3.728385 AGGGCTACTCTTTTGCTTGAT 57.272 42.857 0.00 0.00 0.00 2.57
137 138 4.041691 AGTTAGGGCTACTCTTTTGCTTGA 59.958 41.667 0.00 0.00 0.00 3.02
138 139 4.327680 AGTTAGGGCTACTCTTTTGCTTG 58.672 43.478 0.00 0.00 0.00 4.01
139 140 4.642466 AGTTAGGGCTACTCTTTTGCTT 57.358 40.909 0.00 0.00 0.00 3.91
140 141 5.396884 CCATAGTTAGGGCTACTCTTTTGCT 60.397 44.000 0.00 0.00 0.00 3.91
141 142 4.816925 CCATAGTTAGGGCTACTCTTTTGC 59.183 45.833 0.00 0.00 0.00 3.68
142 143 5.368989 CCCATAGTTAGGGCTACTCTTTTG 58.631 45.833 0.00 0.00 39.96 2.44
143 144 4.412528 CCCCATAGTTAGGGCTACTCTTTT 59.587 45.833 0.00 0.00 45.39 2.27
144 145 3.974642 CCCCATAGTTAGGGCTACTCTTT 59.025 47.826 0.00 0.00 45.39 2.52
145 146 3.588569 CCCCATAGTTAGGGCTACTCTT 58.411 50.000 0.00 0.00 45.39 2.85
146 147 3.261818 CCCCATAGTTAGGGCTACTCT 57.738 52.381 0.00 0.00 45.39 3.24
154 155 4.223032 ACGAATGATAGCCCCATAGTTAGG 59.777 45.833 0.00 0.00 0.00 2.69
156 157 4.836175 TCACGAATGATAGCCCCATAGTTA 59.164 41.667 0.00 0.00 0.00 2.24
157 158 3.646162 TCACGAATGATAGCCCCATAGTT 59.354 43.478 0.00 0.00 0.00 2.24
158 159 3.239449 TCACGAATGATAGCCCCATAGT 58.761 45.455 0.00 0.00 0.00 2.12
159 160 3.511540 TCTCACGAATGATAGCCCCATAG 59.488 47.826 0.00 0.00 33.22 2.23
160 161 3.506398 TCTCACGAATGATAGCCCCATA 58.494 45.455 0.00 0.00 33.22 2.74
161 162 2.329267 TCTCACGAATGATAGCCCCAT 58.671 47.619 0.00 0.00 33.22 4.00
162 163 1.788229 TCTCACGAATGATAGCCCCA 58.212 50.000 0.00 0.00 33.22 4.96
163 164 2.672478 CGATCTCACGAATGATAGCCCC 60.672 54.545 0.00 0.00 33.22 5.80
164 165 2.029828 ACGATCTCACGAATGATAGCCC 60.030 50.000 0.00 0.00 33.22 5.19
165 166 3.290308 ACGATCTCACGAATGATAGCC 57.710 47.619 0.00 0.00 33.22 3.93
166 167 4.290969 TCAACGATCTCACGAATGATAGC 58.709 43.478 0.00 0.00 33.22 2.97
168 169 7.649057 AGTATTCAACGATCTCACGAATGATA 58.351 34.615 0.00 0.00 34.79 2.15
169 170 6.507900 AGTATTCAACGATCTCACGAATGAT 58.492 36.000 0.00 0.00 34.79 2.45
171 172 5.974158 AGAGTATTCAACGATCTCACGAATG 59.026 40.000 0.00 0.00 37.03 2.67
172 173 6.137794 AGAGTATTCAACGATCTCACGAAT 57.862 37.500 0.00 0.00 37.03 3.34
173 174 5.562506 AGAGTATTCAACGATCTCACGAA 57.437 39.130 0.00 0.00 37.03 3.85
175 176 5.096169 ACAAGAGTATTCAACGATCTCACG 58.904 41.667 0.00 0.00 39.31 4.35
176 177 7.251994 ACTACAAGAGTATTCAACGATCTCAC 58.748 38.462 0.00 0.00 36.27 3.51
177 178 7.392494 ACTACAAGAGTATTCAACGATCTCA 57.608 36.000 0.00 0.00 36.27 3.27
178 179 8.690680 AAACTACAAGAGTATTCAACGATCTC 57.309 34.615 0.00 0.00 37.44 2.75
180 181 8.922676 TGAAAACTACAAGAGTATTCAACGATC 58.077 33.333 0.00 0.00 37.44 3.69
182 183 7.924412 ACTGAAAACTACAAGAGTATTCAACGA 59.076 33.333 0.00 0.00 37.44 3.85
183 184 8.073355 ACTGAAAACTACAAGAGTATTCAACG 57.927 34.615 0.00 0.00 37.44 4.10
199 200 9.762933 ATGCACAAAATTACATAACTGAAAACT 57.237 25.926 0.00 0.00 0.00 2.66
200 201 9.796062 CATGCACAAAATTACATAACTGAAAAC 57.204 29.630 0.00 0.00 0.00 2.43
201 202 9.755804 TCATGCACAAAATTACATAACTGAAAA 57.244 25.926 0.00 0.00 0.00 2.29
203 204 8.575589 ACTCATGCACAAAATTACATAACTGAA 58.424 29.630 0.00 0.00 0.00 3.02
204 205 8.109705 ACTCATGCACAAAATTACATAACTGA 57.890 30.769 0.00 0.00 0.00 3.41
205 206 8.746922 AACTCATGCACAAAATTACATAACTG 57.253 30.769 0.00 0.00 0.00 3.16
209 210 9.237187 TCCTAAACTCATGCACAAAATTACATA 57.763 29.630 0.00 0.00 0.00 2.29
211 212 7.517614 TCCTAAACTCATGCACAAAATTACA 57.482 32.000 0.00 0.00 0.00 2.41
212 213 6.528072 GCTCCTAAACTCATGCACAAAATTAC 59.472 38.462 0.00 0.00 0.00 1.89
214 215 5.244626 AGCTCCTAAACTCATGCACAAAATT 59.755 36.000 0.00 0.00 0.00 1.82
216 217 4.144297 AGCTCCTAAACTCATGCACAAAA 58.856 39.130 0.00 0.00 0.00 2.44
217 218 3.753272 GAGCTCCTAAACTCATGCACAAA 59.247 43.478 0.87 0.00 32.98 2.83
218 219 3.338249 GAGCTCCTAAACTCATGCACAA 58.662 45.455 0.87 0.00 32.98 3.33
219 220 2.675032 CGAGCTCCTAAACTCATGCACA 60.675 50.000 8.47 0.00 32.98 4.57
220 221 1.929836 CGAGCTCCTAAACTCATGCAC 59.070 52.381 8.47 0.00 32.98 4.57
221 222 1.824852 TCGAGCTCCTAAACTCATGCA 59.175 47.619 8.47 0.00 32.98 3.96
223 224 4.437239 ACATTCGAGCTCCTAAACTCATG 58.563 43.478 8.47 0.87 32.98 3.07
224 225 4.688021 GACATTCGAGCTCCTAAACTCAT 58.312 43.478 8.47 0.00 32.98 2.90
226 227 3.109619 CGACATTCGAGCTCCTAAACTC 58.890 50.000 8.47 1.75 43.74 3.01
227 228 2.753452 TCGACATTCGAGCTCCTAAACT 59.247 45.455 8.47 0.00 44.82 2.66
228 229 3.146618 TCGACATTCGAGCTCCTAAAC 57.853 47.619 8.47 0.00 44.82 2.01
239 240 3.672397 CAGATTATGAGCCTCGACATTCG 59.328 47.826 0.00 0.00 42.10 3.34
240 241 3.431572 GCAGATTATGAGCCTCGACATTC 59.568 47.826 0.00 0.00 0.00 2.67
241 242 3.397482 GCAGATTATGAGCCTCGACATT 58.603 45.455 0.00 0.00 0.00 2.71
242 243 2.608998 CGCAGATTATGAGCCTCGACAT 60.609 50.000 0.00 0.00 0.00 3.06
243 244 1.269257 CGCAGATTATGAGCCTCGACA 60.269 52.381 0.00 0.00 0.00 4.35
244 245 1.001268 TCGCAGATTATGAGCCTCGAC 60.001 52.381 0.00 0.00 0.00 4.20
248 249 1.139654 TGCTTCGCAGATTATGAGCCT 59.860 47.619 0.00 0.00 35.04 4.58
249 250 1.586422 TGCTTCGCAGATTATGAGCC 58.414 50.000 0.00 0.00 35.04 4.70
253 254 5.334319 TCAAAACATGCTTCGCAGATTATG 58.666 37.500 0.00 0.00 43.65 1.90
255 256 5.369685 TTCAAAACATGCTTCGCAGATTA 57.630 34.783 0.00 0.00 43.65 1.75
256 257 3.921119 TCAAAACATGCTTCGCAGATT 57.079 38.095 0.00 0.00 43.65 2.40
258 259 3.066621 AGTTTCAAAACATGCTTCGCAGA 59.933 39.130 8.23 0.00 41.30 4.26
259 260 3.374745 AGTTTCAAAACATGCTTCGCAG 58.625 40.909 8.23 0.00 41.30 5.18
260 261 3.435105 AGTTTCAAAACATGCTTCGCA 57.565 38.095 8.23 0.00 41.30 5.10
261 262 3.914364 CCTAGTTTCAAAACATGCTTCGC 59.086 43.478 8.23 0.00 41.30 4.70
262 263 4.215399 TCCCTAGTTTCAAAACATGCTTCG 59.785 41.667 8.23 0.00 41.30 3.79
264 265 6.458210 CAATCCCTAGTTTCAAAACATGCTT 58.542 36.000 8.23 0.00 41.30 3.91
265 266 5.047092 CCAATCCCTAGTTTCAAAACATGCT 60.047 40.000 8.23 0.00 41.30 3.79
266 267 5.170748 CCAATCCCTAGTTTCAAAACATGC 58.829 41.667 8.23 0.00 41.30 4.06
267 268 5.170748 GCCAATCCCTAGTTTCAAAACATG 58.829 41.667 8.23 0.00 41.30 3.21
268 269 4.222810 GGCCAATCCCTAGTTTCAAAACAT 59.777 41.667 0.00 0.00 41.30 2.71
269 270 3.576550 GGCCAATCCCTAGTTTCAAAACA 59.423 43.478 0.00 0.00 41.30 2.83
271 272 3.850752 TGGCCAATCCCTAGTTTCAAAA 58.149 40.909 0.61 0.00 0.00 2.44
273 274 3.011144 TGATGGCCAATCCCTAGTTTCAA 59.989 43.478 10.96 0.00 34.00 2.69
274 275 2.580322 TGATGGCCAATCCCTAGTTTCA 59.420 45.455 10.96 0.94 34.00 2.69
275 276 3.297134 TGATGGCCAATCCCTAGTTTC 57.703 47.619 10.96 0.00 34.00 2.78
276 277 3.052642 ACATGATGGCCAATCCCTAGTTT 60.053 43.478 10.96 0.00 34.00 2.66
277 278 2.515429 ACATGATGGCCAATCCCTAGTT 59.485 45.455 10.96 0.00 34.00 2.24
282 283 1.139455 CCAAACATGATGGCCAATCCC 59.861 52.381 10.96 0.00 34.00 3.85
285 286 2.027007 CCAACCAAACATGATGGCCAAT 60.027 45.455 10.96 0.00 41.89 3.16
286 287 1.347050 CCAACCAAACATGATGGCCAA 59.653 47.619 10.96 0.00 41.89 4.52
289 290 0.391528 GCCCAACCAAACATGATGGC 60.392 55.000 18.25 3.57 41.89 4.40
290 291 0.975135 TGCCCAACCAAACATGATGG 59.025 50.000 17.17 17.17 43.84 3.51
292 293 2.837532 GTTGCCCAACCAAACATGAT 57.162 45.000 0.00 0.00 35.36 2.45
305 306 1.152546 AAGTTCACCAGGGTTGCCC 60.153 57.895 0.00 0.00 45.90 5.36
306 307 0.467290 TGAAGTTCACCAGGGTTGCC 60.467 55.000 0.08 0.00 0.00 4.52
307 308 0.954452 CTGAAGTTCACCAGGGTTGC 59.046 55.000 0.08 0.00 0.00 4.17
308 309 2.348411 ACTGAAGTTCACCAGGGTTG 57.652 50.000 0.08 0.00 34.85 3.77
322 323 5.654650 ACAATGTTTACAGGGTTGAACTGAA 59.345 36.000 0.00 0.00 39.24 3.02
324 325 5.067153 TCACAATGTTTACAGGGTTGAACTG 59.933 40.000 0.00 0.00 41.64 3.16
325 326 5.067283 GTCACAATGTTTACAGGGTTGAACT 59.933 40.000 0.00 0.00 0.00 3.01
327 328 4.035792 CGTCACAATGTTTACAGGGTTGAA 59.964 41.667 2.65 0.00 0.00 2.69
328 329 3.562141 CGTCACAATGTTTACAGGGTTGA 59.438 43.478 2.65 0.00 0.00 3.18
329 330 3.562141 TCGTCACAATGTTTACAGGGTTG 59.438 43.478 0.00 0.00 0.00 3.77
330 331 3.811083 TCGTCACAATGTTTACAGGGTT 58.189 40.909 0.00 0.00 0.00 4.11
332 333 3.186409 CACTCGTCACAATGTTTACAGGG 59.814 47.826 0.00 0.00 0.00 4.45
333 334 4.055360 TCACTCGTCACAATGTTTACAGG 58.945 43.478 0.00 0.00 0.00 4.00
334 335 5.651172 TTCACTCGTCACAATGTTTACAG 57.349 39.130 0.00 0.00 0.00 2.74
335 336 7.716768 TTATTCACTCGTCACAATGTTTACA 57.283 32.000 0.00 0.00 0.00 2.41
336 337 8.996988 TTTTATTCACTCGTCACAATGTTTAC 57.003 30.769 0.00 0.00 0.00 2.01
337 338 9.658475 CTTTTTATTCACTCGTCACAATGTTTA 57.342 29.630 0.00 0.00 0.00 2.01
339 340 6.636850 GCTTTTTATTCACTCGTCACAATGTT 59.363 34.615 0.00 0.00 0.00 2.71
342 343 6.560253 AGCTTTTTATTCACTCGTCACAAT 57.440 33.333 0.00 0.00 0.00 2.71
343 344 6.037720 TGAAGCTTTTTATTCACTCGTCACAA 59.962 34.615 0.00 0.00 0.00 3.33
344 345 5.525745 TGAAGCTTTTTATTCACTCGTCACA 59.474 36.000 0.00 0.00 0.00 3.58
345 346 5.985781 TGAAGCTTTTTATTCACTCGTCAC 58.014 37.500 0.00 0.00 0.00 3.67
346 347 6.348458 CCATGAAGCTTTTTATTCACTCGTCA 60.348 38.462 0.00 0.00 0.00 4.35
347 348 6.024049 CCATGAAGCTTTTTATTCACTCGTC 58.976 40.000 0.00 0.00 0.00 4.20
348 349 5.705441 TCCATGAAGCTTTTTATTCACTCGT 59.295 36.000 0.00 0.00 0.00 4.18
350 351 8.031277 ACAATCCATGAAGCTTTTTATTCACTC 58.969 33.333 0.00 0.00 0.00 3.51
351 352 7.899973 ACAATCCATGAAGCTTTTTATTCACT 58.100 30.769 0.00 0.00 0.00 3.41
352 353 8.031277 AGACAATCCATGAAGCTTTTTATTCAC 58.969 33.333 0.00 0.00 0.00 3.18
353 354 8.125978 AGACAATCCATGAAGCTTTTTATTCA 57.874 30.769 0.00 0.00 0.00 2.57
382 383 5.301045 GGTGTTCTGGGCTTAAGTACTTTTT 59.699 40.000 14.49 0.00 0.00 1.94
384 385 4.104261 AGGTGTTCTGGGCTTAAGTACTTT 59.896 41.667 14.49 0.00 0.00 2.66
385 386 3.651423 AGGTGTTCTGGGCTTAAGTACTT 59.349 43.478 13.68 13.68 0.00 2.24
386 387 3.248888 AGGTGTTCTGGGCTTAAGTACT 58.751 45.455 4.02 0.00 0.00 2.73
387 388 3.697619 AGGTGTTCTGGGCTTAAGTAC 57.302 47.619 4.02 0.00 0.00 2.73
388 389 4.680407 TCTAGGTGTTCTGGGCTTAAGTA 58.320 43.478 4.02 0.00 0.00 2.24
389 390 3.515901 CTCTAGGTGTTCTGGGCTTAAGT 59.484 47.826 4.02 0.00 0.00 2.24
391 392 3.786553 TCTCTAGGTGTTCTGGGCTTAA 58.213 45.455 0.00 0.00 0.00 1.85
392 393 3.468071 TCTCTAGGTGTTCTGGGCTTA 57.532 47.619 0.00 0.00 0.00 3.09
393 394 2.327325 TCTCTAGGTGTTCTGGGCTT 57.673 50.000 0.00 0.00 0.00 4.35
394 395 2.183679 CTTCTCTAGGTGTTCTGGGCT 58.816 52.381 0.00 0.00 0.00 5.19
395 396 2.167487 CTCTTCTCTAGGTGTTCTGGGC 59.833 54.545 0.00 0.00 0.00 5.36
397 398 3.445805 GTCCTCTTCTCTAGGTGTTCTGG 59.554 52.174 0.00 0.00 35.48 3.86
398 399 3.445805 GGTCCTCTTCTCTAGGTGTTCTG 59.554 52.174 0.00 0.00 35.48 3.02
399 400 3.076182 TGGTCCTCTTCTCTAGGTGTTCT 59.924 47.826 0.00 0.00 35.48 3.01
401 402 3.544698 TGGTCCTCTTCTCTAGGTGTT 57.455 47.619 0.00 0.00 35.48 3.32
402 403 3.544698 TTGGTCCTCTTCTCTAGGTGT 57.455 47.619 0.00 0.00 35.48 4.16
403 404 3.835395 ACTTTGGTCCTCTTCTCTAGGTG 59.165 47.826 0.00 0.00 35.48 4.00
404 405 3.835395 CACTTTGGTCCTCTTCTCTAGGT 59.165 47.826 0.00 0.00 35.48 3.08
406 407 3.368948 GCCACTTTGGTCCTCTTCTCTAG 60.369 52.174 0.00 0.00 40.46 2.43
408 409 1.349357 GCCACTTTGGTCCTCTTCTCT 59.651 52.381 0.00 0.00 40.46 3.10
410 411 1.140312 TGCCACTTTGGTCCTCTTCT 58.860 50.000 0.00 0.00 40.46 2.85
411 412 1.981256 TTGCCACTTTGGTCCTCTTC 58.019 50.000 0.00 0.00 40.46 2.87
412 413 2.430694 GTTTTGCCACTTTGGTCCTCTT 59.569 45.455 0.00 0.00 40.46 2.85
413 414 2.031870 GTTTTGCCACTTTGGTCCTCT 58.968 47.619 0.00 0.00 40.46 3.69
414 415 1.068588 GGTTTTGCCACTTTGGTCCTC 59.931 52.381 0.00 0.00 40.46 3.71
415 416 1.119684 GGTTTTGCCACTTTGGTCCT 58.880 50.000 0.00 0.00 40.46 3.85
416 417 0.105964 GGGTTTTGCCACTTTGGTCC 59.894 55.000 0.00 0.00 40.46 4.46
417 418 0.105964 GGGGTTTTGCCACTTTGGTC 59.894 55.000 0.00 0.00 40.46 4.02
418 419 1.341913 GGGGGTTTTGCCACTTTGGT 61.342 55.000 0.00 0.00 41.58 3.67
421 422 1.128200 GAAGGGGGTTTTGCCACTTT 58.872 50.000 0.00 0.00 43.28 2.66
423 424 1.152333 GGAAGGGGGTTTTGCCACT 60.152 57.895 0.00 0.00 41.58 4.00
424 425 0.762842 AAGGAAGGGGGTTTTGCCAC 60.763 55.000 0.00 0.00 40.96 5.01
426 427 1.621814 GTAAAGGAAGGGGGTTTTGCC 59.378 52.381 0.00 0.00 0.00 4.52
428 429 3.254093 AGGTAAAGGAAGGGGGTTTTG 57.746 47.619 0.00 0.00 0.00 2.44
429 430 4.289837 AAAGGTAAAGGAAGGGGGTTTT 57.710 40.909 0.00 0.00 0.00 2.43
430 431 4.289837 AAAAGGTAAAGGAAGGGGGTTT 57.710 40.909 0.00 0.00 0.00 3.27
465 2582 0.758685 ATTGAGAGCCGAGGGAGGAG 60.759 60.000 0.00 0.00 0.00 3.69
480 2597 2.767394 CAAGCAATGGAATGGGGATTGA 59.233 45.455 0.00 0.00 30.03 2.57
492 2609 1.614903 TGGTGAAGAAGCAAGCAATGG 59.385 47.619 0.00 0.00 32.00 3.16
513 2630 3.482436 TGTGACAAATCTGGGTACAACC 58.518 45.455 0.00 0.00 37.60 3.77
557 2674 1.738099 GCCGTCACGCTCAACTCAT 60.738 57.895 0.00 0.00 0.00 2.90
563 2680 5.830000 ATATATATAAGCCGTCACGCTCA 57.170 39.130 0.00 0.00 38.44 4.26
601 2722 4.503370 GGTACTACTCGCACATAAAGAAGC 59.497 45.833 0.00 0.00 0.00 3.86
612 2733 2.629137 TGAAAGTTGGGTACTACTCGCA 59.371 45.455 0.00 0.00 35.54 5.10
613 2734 3.057033 TCTGAAAGTTGGGTACTACTCGC 60.057 47.826 0.00 0.00 35.54 5.03
614 2735 4.778534 TCTGAAAGTTGGGTACTACTCG 57.221 45.455 0.00 0.00 35.54 4.18
615 2736 6.532988 AGATCTGAAAGTTGGGTACTACTC 57.467 41.667 0.00 0.00 35.54 2.59
620 3068 9.886132 TTTAGATTAGATCTGAAAGTTGGGTAC 57.114 33.333 5.18 0.00 40.51 3.34
647 3095 3.057876 GGCGACATGTGGTGTTTATTTCA 60.058 43.478 1.15 0.00 42.36 2.69
693 3145 1.460273 AAAACAATCGCAACCGGCCT 61.460 50.000 0.00 0.00 40.31 5.19
705 3157 4.559300 CGGAAACTCTGATGCCAAAACAAT 60.559 41.667 0.00 0.00 0.00 2.71
738 3190 3.000080 GCCTCGCGTGTCTTTGTCG 62.000 63.158 5.77 0.00 0.00 4.35
767 3219 0.627307 GAATTGACGACGACGACGAC 59.373 55.000 25.15 19.21 42.66 4.34
784 3236 2.625790 GTGTGGTAAATGGCTGTTGGAA 59.374 45.455 0.00 0.00 0.00 3.53
792 3244 2.671396 CTGTAGTCGTGTGGTAAATGGC 59.329 50.000 0.00 0.00 0.00 4.40
832 3284 2.746277 GTTTCGTCCGCCCAGCAT 60.746 61.111 0.00 0.00 0.00 3.79
833 3285 3.936203 AGTTTCGTCCGCCCAGCA 61.936 61.111 0.00 0.00 0.00 4.41
1006 3518 1.513158 CCGACTCAGCACCGATCTT 59.487 57.895 0.00 0.00 0.00 2.40
1009 3521 3.362399 CTGCCGACTCAGCACCGAT 62.362 63.158 0.00 0.00 36.01 4.18
1023 3535 0.536006 GGGTGTAGATCATGCCTGCC 60.536 60.000 0.00 0.00 0.00 4.85
1146 3658 2.286502 GAGCCCCTCCCTTCCCTT 60.287 66.667 0.00 0.00 0.00 3.95
1198 3713 5.270893 TGCAATTCCAATTCATCCATCAG 57.729 39.130 0.00 0.00 0.00 2.90
1406 3932 1.519455 GACGAAGGAGGCGATGGTG 60.519 63.158 0.00 0.00 0.00 4.17
1539 4137 1.198759 AGGTACAGGCCCACGAACAT 61.199 55.000 0.00 0.00 0.00 2.71
2141 4745 1.218047 GCTCATCTGCCCGTACACA 59.782 57.895 0.00 0.00 0.00 3.72
2744 5348 1.300931 GTTGAGGACGCTGAGCACA 60.301 57.895 4.88 0.00 0.00 4.57
2836 5440 6.312918 GGTCAAATTATCAGCTACTTCGTTGA 59.687 38.462 0.00 0.00 0.00 3.18
2848 5452 2.614057 GCTCCGGTGGTCAAATTATCAG 59.386 50.000 0.00 0.00 0.00 2.90
2853 5457 0.609131 CCAGCTCCGGTGGTCAAATT 60.609 55.000 5.01 0.00 45.06 1.82
2854 5458 1.002134 CCAGCTCCGGTGGTCAAAT 60.002 57.895 5.01 0.00 45.06 2.32
2865 5469 3.844090 GTCTCCGGCTCCAGCTCC 61.844 72.222 0.00 0.00 41.70 4.70
2866 5470 4.200283 CGTCTCCGGCTCCAGCTC 62.200 72.222 0.00 0.00 41.70 4.09
2867 5471 4.742649 TCGTCTCCGGCTCCAGCT 62.743 66.667 0.00 0.00 41.70 4.24
2868 5472 4.500116 GTCGTCTCCGGCTCCAGC 62.500 72.222 0.00 0.00 35.32 4.85
2869 5473 3.827898 GGTCGTCTCCGGCTCCAG 61.828 72.222 0.00 0.00 39.11 3.86
2899 5503 2.656085 CGGTCGAATCATCAGCTACTC 58.344 52.381 0.00 0.00 0.00 2.59
2905 5509 0.103026 TCTGGCGGTCGAATCATCAG 59.897 55.000 0.00 0.00 0.00 2.90
3120 5728 8.930527 TCTTAAATACAGATCCGGATCCTTTTA 58.069 33.333 35.53 27.48 38.58 1.52
3192 5800 2.863809 GTTCTGTGGTCCATGAACCTT 58.136 47.619 20.94 0.00 40.20 3.50
3226 5834 0.969894 AGCAAGAGTAGCAAGTCGGT 59.030 50.000 0.00 0.00 0.00 4.69
3242 5850 2.364973 TCCGGTATGGGAGCAGCA 60.365 61.111 0.00 0.00 38.76 4.41
3322 5930 0.968901 TATGAACGTGGCTCCGAGGT 60.969 55.000 4.24 0.00 0.00 3.85
3362 5995 4.002982 AGACAGCAAAATTGACGATGCTA 58.997 39.130 0.00 0.00 46.75 3.49
3366 5999 4.393062 CAGGTAGACAGCAAAATTGACGAT 59.607 41.667 0.00 0.00 0.00 3.73
3374 6007 0.476338 TGGGCAGGTAGACAGCAAAA 59.524 50.000 0.00 0.00 0.00 2.44
3432 6065 2.735857 GGTGTCCGGGTCGTTTCG 60.736 66.667 0.00 0.00 0.00 3.46
3539 6172 7.555087 AGGACATTTGAACACATTTTTCTGAA 58.445 30.769 0.00 0.00 0.00 3.02
3540 6173 7.111247 AGGACATTTGAACACATTTTTCTGA 57.889 32.000 0.00 0.00 0.00 3.27
3609 6251 6.856895 ACAGACTCAAGTCCTTTTTGAAAAG 58.143 36.000 6.54 8.83 45.85 2.27
3617 6262 6.650120 TCTTTGTAACAGACTCAAGTCCTTT 58.350 36.000 6.54 3.37 45.85 3.11
3618 6263 6.235231 TCTTTGTAACAGACTCAAGTCCTT 57.765 37.500 6.54 1.99 45.85 3.36
3620 6265 8.496751 GTTAATCTTTGTAACAGACTCAAGTCC 58.503 37.037 6.54 0.00 45.85 3.85
3621 6266 8.496751 GGTTAATCTTTGTAACAGACTCAAGTC 58.503 37.037 1.79 1.79 45.08 3.01
3622 6267 7.990886 TGGTTAATCTTTGTAACAGACTCAAGT 59.009 33.333 0.00 0.00 33.86 3.16
3623 6268 8.378172 TGGTTAATCTTTGTAACAGACTCAAG 57.622 34.615 0.00 0.00 33.86 3.02
3624 6269 8.208224 TCTGGTTAATCTTTGTAACAGACTCAA 58.792 33.333 0.00 0.00 33.86 3.02
3625 6270 7.732025 TCTGGTTAATCTTTGTAACAGACTCA 58.268 34.615 0.00 0.00 33.86 3.41
3626 6271 8.603242 TTCTGGTTAATCTTTGTAACAGACTC 57.397 34.615 0.00 0.00 33.86 3.36
3627 6272 8.211629 ACTTCTGGTTAATCTTTGTAACAGACT 58.788 33.333 0.00 0.00 33.86 3.24
3628 6273 8.283291 CACTTCTGGTTAATCTTTGTAACAGAC 58.717 37.037 0.00 0.00 33.86 3.51
3649 6294 3.042887 CGCTTAAGGTGTTTTGCACTTC 58.957 45.455 4.29 0.00 46.86 3.01
3669 6314 0.241749 ATGAATGTTGGTGCAGTGCG 59.758 50.000 11.20 0.00 0.00 5.34
3801 6447 9.632807 GTAGCTATCACATATTTAGGTCTTCTG 57.367 37.037 0.00 0.00 0.00 3.02
3808 6454 9.155975 GTTGATGGTAGCTATCACATATTTAGG 57.844 37.037 9.36 0.00 34.50 2.69
3809 6455 9.710900 TGTTGATGGTAGCTATCACATATTTAG 57.289 33.333 9.36 0.00 34.50 1.85
3811 6457 9.006839 CATGTTGATGGTAGCTATCACATATTT 57.993 33.333 9.36 0.00 34.50 1.40
3812 6458 7.609146 CCATGTTGATGGTAGCTATCACATATT 59.391 37.037 9.36 0.00 43.98 1.28
3813 6459 7.108194 CCATGTTGATGGTAGCTATCACATAT 58.892 38.462 9.36 5.28 43.98 1.78
3814 6460 6.466812 CCATGTTGATGGTAGCTATCACATA 58.533 40.000 9.36 3.34 43.98 2.29
3815 6461 5.311265 CCATGTTGATGGTAGCTATCACAT 58.689 41.667 9.36 8.46 43.98 3.21
3816 6462 4.707105 CCATGTTGATGGTAGCTATCACA 58.293 43.478 9.36 6.99 43.98 3.58
3828 6474 7.718272 AAAATGAACAAAGACCATGTTGATG 57.282 32.000 1.16 0.00 40.90 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.