Multiple sequence alignment - TraesCS3A01G056300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G056300 chr3A 100.000 3352 0 0 1 3352 32414165 32417516 0.000000e+00 6191.0
1 TraesCS3A01G056300 chr3B 94.135 1381 54 2 1530 2910 41036753 41035400 0.000000e+00 2076.0
2 TraesCS3A01G056300 chr3B 90.764 1256 90 15 1530 2767 42195409 42196656 0.000000e+00 1653.0
3 TraesCS3A01G056300 chr3B 90.525 1256 93 15 1530 2767 41142580 41141333 0.000000e+00 1637.0
4 TraesCS3A01G056300 chr3B 92.842 922 45 10 623 1531 41143623 41142710 0.000000e+00 1317.0
5 TraesCS3A01G056300 chr3B 92.842 922 45 10 623 1531 42194366 42195279 0.000000e+00 1317.0
6 TraesCS3A01G056300 chr3B 89.899 990 54 22 560 1529 41037798 41036835 0.000000e+00 1232.0
7 TraesCS3A01G056300 chr3B 94.554 404 19 2 1128 1531 42199280 42199680 3.670000e-174 621.0
8 TraesCS3A01G056300 chr3B 93.204 412 24 3 1528 1935 41138139 41137728 1.330000e-168 603.0
9 TraesCS3A01G056300 chr3B 92.157 306 9 5 223 514 41038113 41037809 5.170000e-113 418.0
10 TraesCS3A01G056300 chr3B 94.094 254 13 2 3099 3352 41030835 41030584 5.250000e-103 385.0
11 TraesCS3A01G056300 chrUn 92.462 995 60 7 1530 2511 362826460 362825468 0.000000e+00 1408.0
12 TraesCS3A01G056300 chrUn 92.625 922 46 11 623 1531 38566474 38567386 0.000000e+00 1306.0
13 TraesCS3A01G056300 chrUn 93.074 823 37 9 720 1531 362827403 362826590 0.000000e+00 1186.0
14 TraesCS3A01G056300 chrUn 94.815 675 27 4 857 1531 400800082 400800748 0.000000e+00 1046.0
15 TraesCS3A01G056300 chrUn 92.744 634 34 5 1530 2152 400800878 400801510 0.000000e+00 905.0
16 TraesCS3A01G056300 chrUn 92.587 634 35 5 1530 2152 38567516 38568148 0.000000e+00 900.0
17 TraesCS3A01G056300 chrUn 90.759 606 36 9 623 1215 440757283 440756685 0.000000e+00 791.0
18 TraesCS3A01G056300 chrUn 88.871 620 55 10 2155 2767 394664395 394663783 0.000000e+00 750.0
19 TraesCS3A01G056300 chrUn 94.554 404 19 2 1128 1531 38572095 38572495 3.670000e-174 621.0
20 TraesCS3A01G056300 chrUn 94.554 404 19 2 1128 1531 359469244 359468844 3.670000e-174 621.0
21 TraesCS3A01G056300 chrUn 94.307 404 20 2 1128 1531 283368824 283368424 1.710000e-172 616.0
22 TraesCS3A01G056300 chrUn 93.204 412 24 3 1528 1935 283368254 283367843 1.330000e-168 603.0
23 TraesCS3A01G056300 chrUn 93.204 412 24 3 1528 1935 359468675 359468264 1.330000e-168 603.0
24 TraesCS3A01G056300 chrUn 92.479 359 24 2 2155 2511 38568316 38568673 8.300000e-141 510.0
25 TraesCS3A01G056300 chr4A 83.156 564 64 17 959 1503 530938486 530937935 1.400000e-133 486.0
26 TraesCS3A01G056300 chr4A 92.857 70 5 0 3278 3347 322762694 322762763 5.920000e-18 102.0
27 TraesCS3A01G056300 chr4A 94.737 38 0 2 3158 3195 537948255 537948220 1.300000e-04 58.4
28 TraesCS3A01G056300 chr1D 85.616 146 20 1 3084 3229 17767473 17767617 5.790000e-33 152.0
29 TraesCS3A01G056300 chr1D 88.235 85 9 1 3268 3352 311991674 311991591 2.130000e-17 100.0
30 TraesCS3A01G056300 chr5A 91.765 85 7 0 3268 3352 283369535 283369451 5.880000e-23 119.0
31 TraesCS3A01G056300 chr2B 89.157 83 9 0 3268 3350 359032314 359032396 1.650000e-18 104.0
32 TraesCS3A01G056300 chr5D 88.235 85 10 0 3268 3352 197482041 197481957 5.920000e-18 102.0
33 TraesCS3A01G056300 chr3D 92.958 71 4 1 3280 3349 289547293 289547223 5.920000e-18 102.0
34 TraesCS3A01G056300 chr6B 87.952 83 10 0 3267 3349 77725709 77725791 7.650000e-17 99.0
35 TraesCS3A01G056300 chr2D 87.209 86 11 0 3267 3352 201959358 201959273 7.650000e-17 99.0
36 TraesCS3A01G056300 chr4B 96.774 31 1 0 3158 3188 87410038 87410068 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G056300 chr3A 32414165 32417516 3351 False 6191.000000 6191 100.000000 1 3352 1 chr3A.!!$F1 3351
1 TraesCS3A01G056300 chr3B 41035400 41038113 2713 True 1242.000000 2076 92.063667 223 2910 3 chr3B.!!$R2 2687
2 TraesCS3A01G056300 chr3B 42194366 42199680 5314 False 1197.000000 1653 92.720000 623 2767 3 chr3B.!!$F1 2144
3 TraesCS3A01G056300 chr3B 41137728 41143623 5895 True 1185.666667 1637 92.190333 623 2767 3 chr3B.!!$R3 2144
4 TraesCS3A01G056300 chrUn 362825468 362827403 1935 True 1297.000000 1408 92.768000 720 2511 2 chrUn.!!$R5 1791
5 TraesCS3A01G056300 chrUn 400800082 400801510 1428 False 975.500000 1046 93.779500 857 2152 2 chrUn.!!$F2 1295
6 TraesCS3A01G056300 chrUn 38566474 38572495 6021 False 834.250000 1306 93.061250 623 2511 4 chrUn.!!$F1 1888
7 TraesCS3A01G056300 chrUn 440756685 440757283 598 True 791.000000 791 90.759000 623 1215 1 chrUn.!!$R2 592
8 TraesCS3A01G056300 chrUn 394663783 394664395 612 True 750.000000 750 88.871000 2155 2767 1 chrUn.!!$R1 612
9 TraesCS3A01G056300 chrUn 359468264 359469244 980 True 612.000000 621 93.879000 1128 1935 2 chrUn.!!$R4 807
10 TraesCS3A01G056300 chrUn 283367843 283368824 981 True 609.500000 616 93.755500 1128 1935 2 chrUn.!!$R3 807
11 TraesCS3A01G056300 chr4A 530937935 530938486 551 True 486.000000 486 83.156000 959 1503 1 chr4A.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.178990 AGAGGTTTCACCACCCTTGC 60.179 55.0 0.0 0.0 41.95 4.01 F
699 717 0.179468 GGTGCCGGCTCTATTGGTTA 59.821 55.0 29.7 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2173 0.103937 CTTGGTGGAGATCTCGCCTC 59.896 60.000 25.61 12.95 36.72 4.70 R
2579 3011 1.202110 CGACCAGCTGAAATGCATCAC 60.202 52.381 17.39 0.00 34.99 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.418328 CCCGTGCCCGATCCCAAA 62.418 66.667 0.00 0.00 35.63 3.28
24 25 2.824041 CCGTGCCCGATCCCAAAG 60.824 66.667 0.00 0.00 35.63 2.77
25 26 2.824041 CGTGCCCGATCCCAAAGG 60.824 66.667 0.00 0.00 35.63 3.11
26 27 3.140814 GTGCCCGATCCCAAAGGC 61.141 66.667 0.00 0.00 45.96 4.35
27 28 4.440829 TGCCCGATCCCAAAGGCC 62.441 66.667 0.00 0.00 45.14 5.19
28 29 4.129148 GCCCGATCCCAAAGGCCT 62.129 66.667 0.00 0.00 39.60 5.19
29 30 2.683475 CCCGATCCCAAAGGCCTT 59.317 61.111 13.78 13.78 0.00 4.35
30 31 1.453928 CCCGATCCCAAAGGCCTTC 60.454 63.158 20.79 3.79 0.00 3.46
31 32 1.453928 CCGATCCCAAAGGCCTTCC 60.454 63.158 20.79 3.37 0.00 3.46
32 33 1.819632 CGATCCCAAAGGCCTTCCG 60.820 63.158 20.79 13.22 37.47 4.30
33 34 2.043953 ATCCCAAAGGCCTTCCGC 60.044 61.111 20.79 0.00 37.47 5.54
34 35 3.995506 ATCCCAAAGGCCTTCCGCG 62.996 63.158 20.79 7.81 38.94 6.46
64 65 4.208686 GGACGGCCGCCTACTCTG 62.209 72.222 28.58 0.00 0.00 3.35
65 66 4.208686 GACGGCCGCCTACTCTGG 62.209 72.222 28.58 0.00 0.00 3.86
72 73 3.289525 GCCTACTCTGGCGACACT 58.710 61.111 0.00 0.00 43.74 3.55
73 74 1.139947 GCCTACTCTGGCGACACTC 59.860 63.158 0.00 0.00 43.74 3.51
74 75 1.810532 CCTACTCTGGCGACACTCC 59.189 63.158 0.00 0.00 35.60 3.85
75 76 1.429825 CTACTCTGGCGACACTCCG 59.570 63.158 0.00 0.00 35.60 4.63
76 77 1.994507 CTACTCTGGCGACACTCCGG 61.995 65.000 0.00 0.00 35.60 5.14
117 118 3.554342 CTGCTCCGGCCAGCCTAT 61.554 66.667 12.28 0.00 38.80 2.57
118 119 2.123033 TGCTCCGGCCAGCCTATA 60.123 61.111 12.28 0.00 38.80 1.31
119 120 2.344129 GCTCCGGCCAGCCTATAC 59.656 66.667 2.24 0.00 32.76 1.47
120 121 2.210711 GCTCCGGCCAGCCTATACT 61.211 63.158 2.24 0.00 32.76 2.12
121 122 1.668294 CTCCGGCCAGCCTATACTG 59.332 63.158 2.24 0.00 37.42 2.74
122 123 1.075525 TCCGGCCAGCCTATACTGT 60.076 57.895 2.24 0.00 35.83 3.55
123 124 1.069765 CCGGCCAGCCTATACTGTG 59.930 63.158 2.24 0.00 35.83 3.66
124 125 1.399744 CCGGCCAGCCTATACTGTGA 61.400 60.000 2.24 0.00 35.83 3.58
125 126 0.464036 CGGCCAGCCTATACTGTGAA 59.536 55.000 2.24 0.00 35.83 3.18
126 127 1.070758 CGGCCAGCCTATACTGTGAAT 59.929 52.381 2.24 0.00 35.83 2.57
127 128 2.485479 CGGCCAGCCTATACTGTGAATT 60.485 50.000 2.24 0.00 35.83 2.17
128 129 3.555966 GGCCAGCCTATACTGTGAATTT 58.444 45.455 0.00 0.00 35.83 1.82
129 130 4.714632 GGCCAGCCTATACTGTGAATTTA 58.285 43.478 0.00 0.00 35.83 1.40
130 131 4.757149 GGCCAGCCTATACTGTGAATTTAG 59.243 45.833 0.00 0.00 35.83 1.85
131 132 5.454755 GGCCAGCCTATACTGTGAATTTAGA 60.455 44.000 0.00 0.00 35.83 2.10
132 133 5.698545 GCCAGCCTATACTGTGAATTTAGAG 59.301 44.000 0.00 0.00 35.83 2.43
133 134 6.226787 CCAGCCTATACTGTGAATTTAGAGG 58.773 44.000 0.00 0.00 35.83 3.69
134 135 6.183361 CCAGCCTATACTGTGAATTTAGAGGT 60.183 42.308 0.00 0.00 35.83 3.85
135 136 7.275920 CAGCCTATACTGTGAATTTAGAGGTT 58.724 38.462 0.00 0.00 32.78 3.50
136 137 7.770897 CAGCCTATACTGTGAATTTAGAGGTTT 59.229 37.037 0.00 0.00 32.78 3.27
137 138 7.988028 AGCCTATACTGTGAATTTAGAGGTTTC 59.012 37.037 0.00 0.00 0.00 2.78
138 139 7.769044 GCCTATACTGTGAATTTAGAGGTTTCA 59.231 37.037 0.00 0.00 0.00 2.69
139 140 9.099454 CCTATACTGTGAATTTAGAGGTTTCAC 57.901 37.037 7.82 7.82 45.94 3.18
140 141 7.923414 ATACTGTGAATTTAGAGGTTTCACC 57.077 36.000 11.28 0.00 45.43 4.02
141 142 5.690865 ACTGTGAATTTAGAGGTTTCACCA 58.309 37.500 11.28 1.60 45.43 4.17
142 143 5.531287 ACTGTGAATTTAGAGGTTTCACCAC 59.469 40.000 11.28 0.00 45.43 4.16
143 144 4.825085 TGTGAATTTAGAGGTTTCACCACC 59.175 41.667 11.28 0.00 45.43 4.61
144 145 4.217767 GTGAATTTAGAGGTTTCACCACCC 59.782 45.833 4.15 0.00 41.95 4.61
145 146 4.105697 TGAATTTAGAGGTTTCACCACCCT 59.894 41.667 0.00 0.00 41.95 4.34
146 147 4.741928 ATTTAGAGGTTTCACCACCCTT 57.258 40.909 0.00 0.00 41.95 3.95
147 148 3.502123 TTAGAGGTTTCACCACCCTTG 57.498 47.619 0.00 0.00 41.95 3.61
148 149 0.178990 AGAGGTTTCACCACCCTTGC 60.179 55.000 0.00 0.00 41.95 4.01
149 150 1.515521 GAGGTTTCACCACCCTTGCG 61.516 60.000 0.00 0.00 41.95 4.85
150 151 2.335011 GTTTCACCACCCTTGCGC 59.665 61.111 0.00 0.00 0.00 6.09
151 152 3.283684 TTTCACCACCCTTGCGCG 61.284 61.111 0.00 0.00 0.00 6.86
169 170 2.564471 GGCATCTGCTGAAGTTGCT 58.436 52.632 16.27 0.00 46.59 3.91
170 171 0.450983 GGCATCTGCTGAAGTTGCTC 59.549 55.000 16.27 5.38 46.59 4.26
171 172 1.451067 GCATCTGCTGAAGTTGCTCT 58.549 50.000 10.80 0.00 44.80 4.09
172 173 2.625737 GCATCTGCTGAAGTTGCTCTA 58.374 47.619 10.80 0.00 44.80 2.43
173 174 3.005554 GCATCTGCTGAAGTTGCTCTAA 58.994 45.455 10.80 0.00 44.80 2.10
174 175 3.063725 GCATCTGCTGAAGTTGCTCTAAG 59.936 47.826 10.80 0.00 44.80 2.18
175 176 4.502016 CATCTGCTGAAGTTGCTCTAAGA 58.498 43.478 0.00 0.00 0.00 2.10
176 177 4.185467 TCTGCTGAAGTTGCTCTAAGAG 57.815 45.455 0.00 0.00 0.00 2.85
189 190 4.647424 CTCTAAGAGCCTTGTGGTAGAG 57.353 50.000 0.00 0.00 32.58 2.43
190 191 4.274147 CTCTAAGAGCCTTGTGGTAGAGA 58.726 47.826 0.00 0.00 37.44 3.10
191 192 4.873010 TCTAAGAGCCTTGTGGTAGAGAT 58.127 43.478 0.00 0.00 35.27 2.75
192 193 5.273208 TCTAAGAGCCTTGTGGTAGAGATT 58.727 41.667 0.00 0.00 35.27 2.40
193 194 4.917906 AAGAGCCTTGTGGTAGAGATTT 57.082 40.909 0.00 0.00 35.27 2.17
194 195 4.213564 AGAGCCTTGTGGTAGAGATTTG 57.786 45.455 0.00 0.00 35.27 2.32
195 196 3.840666 AGAGCCTTGTGGTAGAGATTTGA 59.159 43.478 0.00 0.00 35.27 2.69
196 197 4.287067 AGAGCCTTGTGGTAGAGATTTGAA 59.713 41.667 0.00 0.00 35.27 2.69
197 198 4.985538 AGCCTTGTGGTAGAGATTTGAAA 58.014 39.130 0.00 0.00 35.27 2.69
198 199 5.385198 AGCCTTGTGGTAGAGATTTGAAAA 58.615 37.500 0.00 0.00 35.27 2.29
199 200 5.241728 AGCCTTGTGGTAGAGATTTGAAAAC 59.758 40.000 0.00 0.00 35.27 2.43
200 201 5.241728 GCCTTGTGGTAGAGATTTGAAAACT 59.758 40.000 0.00 0.00 35.27 2.66
201 202 6.239036 GCCTTGTGGTAGAGATTTGAAAACTT 60.239 38.462 0.00 0.00 35.27 2.66
202 203 7.684428 GCCTTGTGGTAGAGATTTGAAAACTTT 60.684 37.037 0.00 0.00 35.27 2.66
203 204 8.197439 CCTTGTGGTAGAGATTTGAAAACTTTT 58.803 33.333 0.00 0.00 0.00 2.27
204 205 9.586435 CTTGTGGTAGAGATTTGAAAACTTTTT 57.414 29.630 0.00 0.00 0.00 1.94
244 245 1.000731 GCAAGGTGCAAGCATGGTTTA 59.999 47.619 7.57 0.00 44.26 2.01
248 249 1.885887 GGTGCAAGCATGGTTTACAGA 59.114 47.619 7.57 0.00 0.00 3.41
333 338 3.084039 AGATGCCGACATGATTTTGTGT 58.916 40.909 0.00 0.00 36.35 3.72
393 398 4.512944 TCAAGTCAACTCATTCTTGTCTGC 59.487 41.667 0.00 0.00 38.53 4.26
408 421 2.806856 CTGCGCAGATCTCGTTGGC 61.807 63.158 33.66 4.59 0.00 4.52
463 478 0.463620 AGCGATTCTTCTCTGGAGCC 59.536 55.000 0.00 0.00 0.00 4.70
492 507 0.605589 CCGGCCGTTTCCTTCTTCTT 60.606 55.000 26.12 0.00 0.00 2.52
496 511 2.288213 GGCCGTTTCCTTCTTCTTTTGG 60.288 50.000 0.00 0.00 0.00 3.28
514 529 0.248843 GGCTCTTCACAGCTGCTACT 59.751 55.000 15.27 0.00 39.58 2.57
515 530 1.338579 GGCTCTTCACAGCTGCTACTT 60.339 52.381 15.27 0.00 39.58 2.24
516 531 1.999024 GCTCTTCACAGCTGCTACTTC 59.001 52.381 15.27 0.00 36.38 3.01
517 532 2.353605 GCTCTTCACAGCTGCTACTTCT 60.354 50.000 15.27 0.00 36.38 2.85
518 533 3.119316 GCTCTTCACAGCTGCTACTTCTA 60.119 47.826 15.27 0.00 36.38 2.10
519 534 4.671377 CTCTTCACAGCTGCTACTTCTAG 58.329 47.826 15.27 0.45 0.00 2.43
520 535 4.336280 TCTTCACAGCTGCTACTTCTAGA 58.664 43.478 15.27 2.91 0.00 2.43
521 536 4.397730 TCTTCACAGCTGCTACTTCTAGAG 59.602 45.833 15.27 0.00 0.00 2.43
522 537 3.956744 TCACAGCTGCTACTTCTAGAGA 58.043 45.455 15.27 0.00 0.00 3.10
523 538 3.944650 TCACAGCTGCTACTTCTAGAGAG 59.055 47.826 15.27 0.00 0.00 3.20
524 539 3.066621 CACAGCTGCTACTTCTAGAGAGG 59.933 52.174 15.27 0.00 0.00 3.69
525 540 2.622942 CAGCTGCTACTTCTAGAGAGGG 59.377 54.545 0.00 0.00 0.00 4.30
526 541 2.512056 AGCTGCTACTTCTAGAGAGGGA 59.488 50.000 0.00 0.00 0.00 4.20
527 542 2.884639 GCTGCTACTTCTAGAGAGGGAG 59.115 54.545 0.00 0.00 35.39 4.30
528 543 3.486383 CTGCTACTTCTAGAGAGGGAGG 58.514 54.545 3.30 0.00 33.12 4.30
529 544 3.124066 TGCTACTTCTAGAGAGGGAGGA 58.876 50.000 3.30 0.00 33.12 3.71
530 545 3.724738 TGCTACTTCTAGAGAGGGAGGAT 59.275 47.826 3.30 0.00 33.12 3.24
531 546 4.169068 TGCTACTTCTAGAGAGGGAGGATT 59.831 45.833 3.30 0.00 33.12 3.01
532 547 4.765339 GCTACTTCTAGAGAGGGAGGATTC 59.235 50.000 3.30 0.00 33.12 2.52
533 548 3.827722 ACTTCTAGAGAGGGAGGATTCG 58.172 50.000 0.00 0.00 0.00 3.34
534 549 3.460340 ACTTCTAGAGAGGGAGGATTCGA 59.540 47.826 0.00 0.00 0.00 3.71
535 550 4.105697 ACTTCTAGAGAGGGAGGATTCGAT 59.894 45.833 0.00 0.00 0.00 3.59
536 551 4.733077 TCTAGAGAGGGAGGATTCGATT 57.267 45.455 0.00 0.00 0.00 3.34
537 552 4.658063 TCTAGAGAGGGAGGATTCGATTC 58.342 47.826 0.00 0.00 0.00 2.52
538 553 2.604139 AGAGAGGGAGGATTCGATTCC 58.396 52.381 16.90 16.90 35.90 3.01
541 556 1.761822 GGGAGGATTCGATTCCCCC 59.238 63.158 24.81 24.81 43.98 5.40
557 572 1.839424 CCCCCAAGTGTTCCATCTTC 58.161 55.000 0.00 0.00 0.00 2.87
558 573 1.355720 CCCCCAAGTGTTCCATCTTCT 59.644 52.381 0.00 0.00 0.00 2.85
571 586 2.109774 CATCTTCTCCAGGTCAGAGCT 58.890 52.381 0.00 0.00 0.00 4.09
581 596 5.063880 TCCAGGTCAGAGCTTTTTAGAAAC 58.936 41.667 0.00 0.00 0.00 2.78
669 687 5.011431 AGAGATCGATCCATGCATGTTTAGA 59.989 40.000 24.58 17.69 0.00 2.10
672 690 2.348872 CGATCCATGCATGTTTAGACGC 60.349 50.000 24.58 9.76 0.00 5.19
699 717 0.179468 GGTGCCGGCTCTATTGGTTA 59.821 55.000 29.70 0.00 0.00 2.85
705 723 2.434702 CCGGCTCTATTGGTTAGGTTCT 59.565 50.000 0.00 0.00 0.00 3.01
714 732 5.536497 ATTGGTTAGGTTCTTCCTTGGAT 57.464 39.130 0.00 0.00 45.67 3.41
718 736 1.075601 AGGTTCTTCCTTGGATGCCA 58.924 50.000 0.00 0.00 45.67 4.92
723 741 2.826777 CTTCCTTGGATGCCAGCGGT 62.827 60.000 0.00 0.00 33.81 5.68
779 797 1.542915 CTCTGTTTTGTGGCTCCATGG 59.457 52.381 4.97 4.97 0.00 3.66
831 860 3.775654 CAGCGGGTGAGGGGAGAC 61.776 72.222 0.00 0.00 0.00 3.36
901 930 5.279657 GGGATGTTTGGCTTTTCTCTGAAAT 60.280 40.000 0.00 0.00 0.00 2.17
926 955 4.415881 TCTGTCTTGCTCTGGTAAACAA 57.584 40.909 0.00 0.00 0.00 2.83
942 971 4.871933 AAACAAGGATTTGTGACCATCC 57.128 40.909 3.30 3.30 46.54 3.51
943 972 3.524095 ACAAGGATTTGTGACCATCCA 57.476 42.857 12.06 0.00 45.54 3.41
944 973 4.051661 ACAAGGATTTGTGACCATCCAT 57.948 40.909 12.06 0.00 45.54 3.41
945 974 5.191727 ACAAGGATTTGTGACCATCCATA 57.808 39.130 12.06 0.00 45.54 2.74
979 1008 2.549064 TGTAGCAGCTCAGCTCAAAA 57.451 45.000 0.00 0.00 45.26 2.44
985 1014 2.857489 GCAGCTCAGCTCAAAACTTGTG 60.857 50.000 0.00 0.00 36.40 3.33
1113 1145 4.017808 AGTTCTCACCAGAGCGTATACTT 58.982 43.478 0.56 0.00 41.81 2.24
1206 1259 4.901868 AGATGCCAACATTTGCTGAAAAT 58.098 34.783 0.00 0.00 39.13 1.82
1341 1394 7.066307 TCAGAATATTATGGCTCTGCAACTA 57.934 36.000 10.08 0.00 36.15 2.24
1404 1457 1.134551 GCCCAAAAGAAAGTGGTGCAA 60.135 47.619 0.00 0.00 33.67 4.08
1603 1839 5.467738 TCAGAGGTATCCTGTGTAATGGAT 58.532 41.667 11.65 0.00 44.12 3.41
1620 1856 0.798776 GATTGGGACACACGCTTCAG 59.201 55.000 0.00 0.00 39.29 3.02
1674 1910 4.963276 TCCTACACAGCATTAACATTGC 57.037 40.909 0.00 0.00 40.45 3.56
1759 1995 0.322636 TCGGTCTCTCGAGGCTCTTT 60.323 55.000 13.56 0.00 34.82 2.52
1828 2064 7.822334 TCATAGTAAGTCAAACATCAAATCCGT 59.178 33.333 0.00 0.00 0.00 4.69
1846 2082 4.128643 TCCGTTAACATTTTGTTCCGTCT 58.871 39.130 6.39 0.00 40.22 4.18
1940 2177 5.656416 AGCTCCAGAATATCTATACAGAGGC 59.344 44.000 0.00 0.00 33.22 4.70
2107 2344 9.438228 GAAAGACTGGGGTATATATTTAGAAGC 57.562 37.037 0.00 0.00 0.00 3.86
2108 2345 8.743636 AAGACTGGGGTATATATTTAGAAGCT 57.256 34.615 0.00 0.00 0.00 3.74
2109 2346 8.368962 AGACTGGGGTATATATTTAGAAGCTC 57.631 38.462 0.00 0.00 0.00 4.09
2110 2347 7.956315 AGACTGGGGTATATATTTAGAAGCTCA 59.044 37.037 0.00 0.00 0.00 4.26
2111 2348 8.686739 ACTGGGGTATATATTTAGAAGCTCAT 57.313 34.615 0.00 0.00 0.00 2.90
2112 2349 8.543774 ACTGGGGTATATATTTAGAAGCTCATG 58.456 37.037 0.00 0.00 0.00 3.07
2113 2350 8.679344 TGGGGTATATATTTAGAAGCTCATGA 57.321 34.615 0.00 0.00 0.00 3.07
2114 2351 9.284131 TGGGGTATATATTTAGAAGCTCATGAT 57.716 33.333 0.00 0.00 0.00 2.45
2123 2360 8.757982 ATTTAGAAGCTCATGATACAATTGGT 57.242 30.769 10.83 0.00 0.00 3.67
2124 2361 8.579850 TTTAGAAGCTCATGATACAATTGGTT 57.420 30.769 10.83 0.00 0.00 3.67
2125 2362 8.579850 TTAGAAGCTCATGATACAATTGGTTT 57.420 30.769 10.83 0.00 0.00 3.27
2331 2761 1.399714 TGTCGATAGGCTCAACGGAT 58.600 50.000 0.00 0.00 44.72 4.18
2426 2858 0.854218 TTTTGTTAGCCCCCACCTCA 59.146 50.000 0.00 0.00 0.00 3.86
2500 2932 6.748333 TGTTTTATGAGATTGCAGAGGAAG 57.252 37.500 0.00 0.00 0.00 3.46
2501 2933 6.240894 TGTTTTATGAGATTGCAGAGGAAGT 58.759 36.000 0.00 0.00 0.00 3.01
2548 2980 7.496346 AGGACAATCAATTCTGACTAACCTA 57.504 36.000 0.00 0.00 33.30 3.08
2598 3055 1.202110 CGTGATGCATTTCAGCTGGTC 60.202 52.381 15.13 2.14 34.99 4.02
2606 3063 3.119849 GCATTTCAGCTGGTCGTAACATT 60.120 43.478 15.13 0.00 0.00 2.71
2622 3079 9.270576 GTCGTAACATTCGTACACTATATATGG 57.729 37.037 0.00 0.00 0.00 2.74
2714 3171 4.037803 ACAACATGCTTCATTGTTGCTACA 59.962 37.500 13.93 0.00 43.64 2.74
2763 3220 2.884012 TGCGTCATTGTGGATCTTGTTT 59.116 40.909 0.00 0.00 0.00 2.83
2799 4394 9.423061 TCTTTTACCCAACTACGTAGTTATTTC 57.577 33.333 34.03 0.00 44.19 2.17
2884 5247 5.700373 GTGGCATCATATTTCCTCTTCTCTC 59.300 44.000 0.00 0.00 0.00 3.20
2889 5252 5.595885 TCATATTTCCTCTTCTCTCTTGCG 58.404 41.667 0.00 0.00 0.00 4.85
2910 5273 4.616802 GCGTGTATGCAACAATATATTGGC 59.383 41.667 25.45 20.29 40.63 4.52
2911 5274 5.756849 CGTGTATGCAACAATATATTGGCA 58.243 37.500 25.45 24.20 40.63 4.92
2914 5277 7.369607 GTGTATGCAACAATATATTGGCATGA 58.630 34.615 31.54 22.43 41.98 3.07
2916 5279 5.848833 TGCAACAATATATTGGCATGACA 57.151 34.783 25.45 18.50 41.96 3.58
2917 5280 6.408107 TGCAACAATATATTGGCATGACAT 57.592 33.333 25.45 3.24 41.96 3.06
2918 5281 6.448852 TGCAACAATATATTGGCATGACATC 58.551 36.000 25.45 11.23 41.96 3.06
2919 5282 6.040616 TGCAACAATATATTGGCATGACATCA 59.959 34.615 25.45 13.04 41.96 3.07
2921 5284 7.095940 GCAACAATATATTGGCATGACATCAAC 60.096 37.037 25.45 7.00 41.96 3.18
2924 5287 8.644216 ACAATATATTGGCATGACATCAACAAT 58.356 29.630 25.45 0.00 41.96 2.71
2925 5288 8.921670 CAATATATTGGCATGACATCAACAATG 58.078 33.333 16.41 0.00 36.48 2.82
2926 5289 6.718522 ATATTGGCATGACATCAACAATGA 57.281 33.333 0.00 0.00 38.83 2.57
2928 5291 5.408880 TTGGCATGACATCAACAATGATT 57.591 34.783 0.00 0.00 43.89 2.57
2929 5292 5.408880 TGGCATGACATCAACAATGATTT 57.591 34.783 0.00 0.00 43.89 2.17
2930 5293 5.412640 TGGCATGACATCAACAATGATTTC 58.587 37.500 0.00 0.00 43.89 2.17
2931 5294 5.186215 TGGCATGACATCAACAATGATTTCT 59.814 36.000 0.00 0.00 43.89 2.52
2932 5295 6.103997 GGCATGACATCAACAATGATTTCTT 58.896 36.000 0.00 0.00 43.89 2.52
2933 5296 6.592607 GGCATGACATCAACAATGATTTCTTT 59.407 34.615 0.00 0.00 43.89 2.52
2934 5297 7.412563 GGCATGACATCAACAATGATTTCTTTG 60.413 37.037 0.00 5.03 43.89 2.77
2935 5298 7.329962 GCATGACATCAACAATGATTTCTTTGA 59.670 33.333 11.76 0.00 43.89 2.69
2937 5300 9.938280 ATGACATCAACAATGATTTCTTTGATT 57.062 25.926 11.76 2.41 43.89 2.57
2938 5301 9.767228 TGACATCAACAATGATTTCTTTGATTT 57.233 25.926 11.76 0.37 43.89 2.17
2965 5328 9.533253 TGAATTTTTGAAAAGTTTCATCTCTCC 57.467 29.630 7.28 0.00 45.65 3.71
2966 5329 8.579682 AATTTTTGAAAAGTTTCATCTCTCCG 57.420 30.769 7.28 0.00 45.65 4.63
2967 5330 5.689383 TTTGAAAAGTTTCATCTCTCCGG 57.311 39.130 7.28 0.00 45.65 5.14
2968 5331 3.074412 TGAAAAGTTTCATCTCTCCGGC 58.926 45.455 0.00 0.00 41.88 6.13
2969 5332 2.115343 AAAGTTTCATCTCTCCGGCC 57.885 50.000 0.00 0.00 0.00 6.13
2970 5333 1.280457 AAGTTTCATCTCTCCGGCCT 58.720 50.000 0.00 0.00 0.00 5.19
2972 5335 2.683768 AGTTTCATCTCTCCGGCCTAT 58.316 47.619 0.00 0.00 0.00 2.57
2976 5428 2.242926 TCATCTCTCCGGCCTATCTTG 58.757 52.381 0.00 0.00 0.00 3.02
2982 5434 3.242867 TCTCCGGCCTATCTTGATTGAT 58.757 45.455 0.00 0.00 0.00 2.57
2986 5438 5.734720 TCCGGCCTATCTTGATTGATAATC 58.265 41.667 0.00 0.00 38.40 1.75
2987 5439 4.878397 CCGGCCTATCTTGATTGATAATCC 59.122 45.833 0.00 0.00 37.09 3.01
2988 5440 4.568359 CGGCCTATCTTGATTGATAATCCG 59.432 45.833 0.00 0.00 37.44 4.18
2989 5441 4.878397 GGCCTATCTTGATTGATAATCCGG 59.122 45.833 0.00 0.00 37.09 5.14
2996 5448 5.588648 TCTTGATTGATAATCCGGTTTCACC 59.411 40.000 0.00 0.00 37.09 4.02
3011 5463 4.976116 GGTTTCACCGTTGATTTCTTTCTG 59.024 41.667 0.00 0.00 0.00 3.02
3012 5464 4.829064 TTCACCGTTGATTTCTTTCTGG 57.171 40.909 0.00 0.00 0.00 3.86
3013 5465 3.815809 TCACCGTTGATTTCTTTCTGGT 58.184 40.909 0.00 0.00 0.00 4.00
3014 5466 3.563808 TCACCGTTGATTTCTTTCTGGTG 59.436 43.478 1.74 1.74 45.34 4.17
3015 5467 3.563808 CACCGTTGATTTCTTTCTGGTGA 59.436 43.478 1.96 0.00 46.56 4.02
3016 5468 3.815401 ACCGTTGATTTCTTTCTGGTGAG 59.185 43.478 0.00 0.00 0.00 3.51
3017 5469 4.065088 CCGTTGATTTCTTTCTGGTGAGA 58.935 43.478 0.00 0.00 0.00 3.27
3018 5470 4.515191 CCGTTGATTTCTTTCTGGTGAGAA 59.485 41.667 0.00 0.00 36.36 2.87
3019 5471 5.444122 CGTTGATTTCTTTCTGGTGAGAAC 58.556 41.667 0.00 0.00 37.97 3.01
3020 5472 5.237344 CGTTGATTTCTTTCTGGTGAGAACT 59.763 40.000 0.00 0.00 37.97 3.01
3021 5473 6.238484 CGTTGATTTCTTTCTGGTGAGAACTT 60.238 38.462 0.00 0.00 37.97 2.66
3022 5474 7.484140 GTTGATTTCTTTCTGGTGAGAACTTT 58.516 34.615 0.00 0.00 37.97 2.66
3030 5627 7.495934 TCTTTCTGGTGAGAACTTTGAAACTAG 59.504 37.037 0.00 0.00 37.97 2.57
3033 5630 7.155328 TCTGGTGAGAACTTTGAAACTAGATC 58.845 38.462 0.00 0.00 0.00 2.75
3038 5635 8.226448 GTGAGAACTTTGAAACTAGATCACATG 58.774 37.037 0.00 0.00 34.82 3.21
3040 5637 8.682936 AGAACTTTGAAACTAGATCACATGTT 57.317 30.769 0.00 5.79 0.00 2.71
3042 5639 7.206981 ACTTTGAAACTAGATCACATGTTGG 57.793 36.000 0.00 0.00 0.00 3.77
3043 5640 6.772716 ACTTTGAAACTAGATCACATGTTGGT 59.227 34.615 0.00 0.00 0.00 3.67
3044 5641 7.936847 ACTTTGAAACTAGATCACATGTTGGTA 59.063 33.333 0.00 0.00 0.00 3.25
3046 5643 7.848223 TGAAACTAGATCACATGTTGGTATG 57.152 36.000 0.00 0.00 0.00 2.39
3050 5647 8.635765 AACTAGATCACATGTTGGTATGTTTT 57.364 30.769 0.00 0.00 39.17 2.43
3051 5648 8.044060 ACTAGATCACATGTTGGTATGTTTTG 57.956 34.615 0.00 0.00 39.17 2.44
3052 5649 5.713025 AGATCACATGTTGGTATGTTTTGC 58.287 37.500 0.00 0.00 39.17 3.68
3054 5651 3.638627 TCACATGTTGGTATGTTTTGCCA 59.361 39.130 0.00 0.00 39.17 4.92
3081 5678 6.448053 TTTTTCTTCGTCGATACTTGTCAG 57.552 37.500 0.00 0.00 0.00 3.51
3082 5679 3.759527 TCTTCGTCGATACTTGTCAGG 57.240 47.619 0.00 0.00 0.00 3.86
3083 5680 3.079578 TCTTCGTCGATACTTGTCAGGT 58.920 45.455 0.00 0.00 0.00 4.00
3084 5681 3.504906 TCTTCGTCGATACTTGTCAGGTT 59.495 43.478 0.00 0.00 0.00 3.50
3085 5682 4.696877 TCTTCGTCGATACTTGTCAGGTTA 59.303 41.667 0.00 0.00 0.00 2.85
3086 5683 5.356190 TCTTCGTCGATACTTGTCAGGTTAT 59.644 40.000 0.00 0.00 0.00 1.89
3087 5684 4.916870 TCGTCGATACTTGTCAGGTTATG 58.083 43.478 0.00 0.00 0.00 1.90
3088 5685 4.637091 TCGTCGATACTTGTCAGGTTATGA 59.363 41.667 0.00 0.00 34.79 2.15
3089 5686 4.970611 CGTCGATACTTGTCAGGTTATGAG 59.029 45.833 0.00 0.00 39.07 2.90
3090 5687 5.282510 GTCGATACTTGTCAGGTTATGAGG 58.717 45.833 0.00 0.00 39.07 3.86
3091 5688 4.051922 CGATACTTGTCAGGTTATGAGGC 58.948 47.826 0.00 0.00 39.07 4.70
3092 5689 4.441495 CGATACTTGTCAGGTTATGAGGCA 60.441 45.833 0.00 0.00 39.07 4.75
3093 5690 3.059352 ACTTGTCAGGTTATGAGGCAC 57.941 47.619 0.00 0.00 39.07 5.01
3095 5692 3.073062 ACTTGTCAGGTTATGAGGCACTT 59.927 43.478 0.00 0.00 41.55 3.16
3096 5693 3.057969 TGTCAGGTTATGAGGCACTTG 57.942 47.619 0.00 0.00 41.55 3.16
3097 5694 2.290260 TGTCAGGTTATGAGGCACTTGG 60.290 50.000 0.00 0.00 41.55 3.61
3098 5695 1.985159 TCAGGTTATGAGGCACTTGGT 59.015 47.619 0.00 0.00 41.55 3.67
3099 5696 2.375174 TCAGGTTATGAGGCACTTGGTT 59.625 45.455 0.00 0.00 41.55 3.67
3100 5697 2.489329 CAGGTTATGAGGCACTTGGTTG 59.511 50.000 0.00 0.00 41.55 3.77
3101 5698 2.108250 AGGTTATGAGGCACTTGGTTGT 59.892 45.455 0.00 0.00 41.55 3.32
3102 5699 2.488153 GGTTATGAGGCACTTGGTTGTC 59.512 50.000 0.00 0.00 41.55 3.18
3103 5700 3.146066 GTTATGAGGCACTTGGTTGTCA 58.854 45.455 0.00 0.00 41.55 3.58
3104 5701 2.592102 ATGAGGCACTTGGTTGTCAT 57.408 45.000 0.00 0.00 41.55 3.06
3105 5702 3.719268 ATGAGGCACTTGGTTGTCATA 57.281 42.857 0.00 0.00 41.55 2.15
3106 5703 3.719268 TGAGGCACTTGGTTGTCATAT 57.281 42.857 0.00 0.00 41.55 1.78
3107 5704 4.032960 TGAGGCACTTGGTTGTCATATT 57.967 40.909 0.00 0.00 41.55 1.28
3108 5705 5.172687 TGAGGCACTTGGTTGTCATATTA 57.827 39.130 0.00 0.00 41.55 0.98
3109 5706 5.565509 TGAGGCACTTGGTTGTCATATTAA 58.434 37.500 0.00 0.00 41.55 1.40
3110 5707 6.007076 TGAGGCACTTGGTTGTCATATTAAA 58.993 36.000 0.00 0.00 41.55 1.52
3111 5708 6.663093 TGAGGCACTTGGTTGTCATATTAAAT 59.337 34.615 0.00 0.00 41.55 1.40
3112 5709 7.178274 TGAGGCACTTGGTTGTCATATTAAATT 59.822 33.333 0.00 0.00 41.55 1.82
3113 5710 8.588290 AGGCACTTGGTTGTCATATTAAATTA 57.412 30.769 0.00 0.00 27.25 1.40
3114 5711 9.030452 AGGCACTTGGTTGTCATATTAAATTAA 57.970 29.630 0.00 0.00 27.25 1.40
3115 5712 9.083080 GGCACTTGGTTGTCATATTAAATTAAC 57.917 33.333 0.00 0.00 0.00 2.01
3116 5713 9.855021 GCACTTGGTTGTCATATTAAATTAACT 57.145 29.630 0.00 0.00 0.00 2.24
3124 5721 9.646427 TTGTCATATTAAATTAACTTGGTTGCC 57.354 29.630 0.00 0.00 0.00 4.52
3125 5722 9.030452 TGTCATATTAAATTAACTTGGTTGCCT 57.970 29.630 0.00 0.00 0.00 4.75
3126 5723 9.301153 GTCATATTAAATTAACTTGGTTGCCTG 57.699 33.333 0.00 0.00 0.00 4.85
3127 5724 8.474025 TCATATTAAATTAACTTGGTTGCCTGG 58.526 33.333 0.00 0.00 0.00 4.45
3128 5725 6.680148 ATTAAATTAACTTGGTTGCCTGGT 57.320 33.333 0.00 0.00 0.00 4.00
3129 5726 6.487299 TTAAATTAACTTGGTTGCCTGGTT 57.513 33.333 0.00 0.00 0.00 3.67
3130 5727 4.335400 AATTAACTTGGTTGCCTGGTTG 57.665 40.909 0.00 0.00 0.00 3.77
3131 5728 1.036707 TAACTTGGTTGCCTGGTTGC 58.963 50.000 0.00 0.00 0.00 4.17
3132 5729 0.975040 AACTTGGTTGCCTGGTTGCA 60.975 50.000 0.00 0.00 40.07 4.08
3133 5730 1.364901 CTTGGTTGCCTGGTTGCAG 59.635 57.895 0.00 0.00 43.21 4.41
3134 5731 1.076412 TTGGTTGCCTGGTTGCAGA 60.076 52.632 0.00 0.00 43.21 4.26
3135 5732 0.685785 TTGGTTGCCTGGTTGCAGAA 60.686 50.000 0.00 0.00 43.21 3.02
3136 5733 0.469705 TGGTTGCCTGGTTGCAGAAT 60.470 50.000 0.00 0.00 43.21 2.40
3137 5734 0.037975 GGTTGCCTGGTTGCAGAATG 60.038 55.000 0.00 0.00 43.21 2.67
3154 5751 3.118261 AGAATGCCAGTGTATACCACCAG 60.118 47.826 0.00 0.00 45.74 4.00
3157 5754 2.236146 TGCCAGTGTATACCACCAGAAG 59.764 50.000 0.00 0.00 45.74 2.85
3163 5760 3.933332 GTGTATACCACCAGAAGACTTGC 59.067 47.826 0.00 0.00 38.18 4.01
3167 5764 9.827422 GTGTATACCACCAGAAGACTTGCTTCA 62.827 44.444 0.00 0.00 45.19 3.02
3177 5774 4.357918 AGACTTGCTTCATGGTACTTGT 57.642 40.909 0.00 0.00 0.00 3.16
3178 5775 4.067896 AGACTTGCTTCATGGTACTTGTG 58.932 43.478 0.00 0.00 0.00 3.33
3179 5776 3.815401 GACTTGCTTCATGGTACTTGTGT 59.185 43.478 0.00 0.00 0.00 3.72
3180 5777 3.565482 ACTTGCTTCATGGTACTTGTGTG 59.435 43.478 0.00 0.00 0.00 3.82
3181 5778 3.483808 TGCTTCATGGTACTTGTGTGA 57.516 42.857 0.00 0.00 0.00 3.58
3182 5779 3.402110 TGCTTCATGGTACTTGTGTGAG 58.598 45.455 0.00 0.00 0.00 3.51
3183 5780 3.181455 TGCTTCATGGTACTTGTGTGAGT 60.181 43.478 0.00 0.00 0.00 3.41
3184 5781 3.815401 GCTTCATGGTACTTGTGTGAGTT 59.185 43.478 0.00 0.00 0.00 3.01
3185 5782 4.319766 GCTTCATGGTACTTGTGTGAGTTG 60.320 45.833 0.00 0.00 0.00 3.16
3189 5786 4.681074 TGGTACTTGTGTGAGTTGATGA 57.319 40.909 0.00 0.00 0.00 2.92
3190 5787 4.377021 TGGTACTTGTGTGAGTTGATGAC 58.623 43.478 0.00 0.00 0.00 3.06
3192 5789 4.211374 GGTACTTGTGTGAGTTGATGACAC 59.789 45.833 0.00 0.00 40.38 3.67
3194 5791 4.122776 ACTTGTGTGAGTTGATGACACTC 58.877 43.478 0.00 0.00 40.57 3.51
3196 5793 4.406648 TGTGTGAGTTGATGACACTCTT 57.593 40.909 0.00 0.00 40.57 2.85
3198 5795 4.811024 TGTGTGAGTTGATGACACTCTTTC 59.189 41.667 0.00 0.00 40.57 2.62
3199 5796 4.212214 GTGTGAGTTGATGACACTCTTTCC 59.788 45.833 0.00 0.00 37.58 3.13
3201 5798 3.648067 TGAGTTGATGACACTCTTTCCCT 59.352 43.478 2.00 0.00 0.00 4.20
3202 5799 4.838423 TGAGTTGATGACACTCTTTCCCTA 59.162 41.667 2.00 0.00 0.00 3.53
3205 5802 6.176183 AGTTGATGACACTCTTTCCCTATTG 58.824 40.000 0.00 0.00 0.00 1.90
3206 5803 5.762179 TGATGACACTCTTTCCCTATTGT 57.238 39.130 0.00 0.00 0.00 2.71
3208 5805 7.252612 TGATGACACTCTTTCCCTATTGTTA 57.747 36.000 0.00 0.00 0.00 2.41
3210 5807 7.606456 TGATGACACTCTTTCCCTATTGTTAAC 59.394 37.037 0.00 0.00 0.00 2.01
3211 5808 6.833041 TGACACTCTTTCCCTATTGTTAACA 58.167 36.000 3.59 3.59 0.00 2.41
3212 5809 6.708949 TGACACTCTTTCCCTATTGTTAACAC 59.291 38.462 8.07 0.00 0.00 3.32
3214 5811 7.287810 ACACTCTTTCCCTATTGTTAACACTT 58.712 34.615 8.07 1.51 0.00 3.16
3215 5812 7.228706 ACACTCTTTCCCTATTGTTAACACTTG 59.771 37.037 8.07 4.09 0.00 3.16
3217 5814 7.996644 ACTCTTTCCCTATTGTTAACACTTGAA 59.003 33.333 8.07 4.69 0.00 2.69
3223 5820 9.967451 TCCCTATTGTTAACACTTGAATATTCA 57.033 29.630 14.23 14.23 34.92 2.57
3229 5826 8.239681 TGTTAACACTTGAATATTCACTCTCG 57.760 34.615 17.76 7.62 36.83 4.04
3230 5827 8.085909 TGTTAACACTTGAATATTCACTCTCGA 58.914 33.333 17.76 1.52 36.83 4.04
3231 5828 6.952935 AACACTTGAATATTCACTCTCGAC 57.047 37.500 17.76 0.00 36.83 4.20
3232 5829 5.411781 ACACTTGAATATTCACTCTCGACC 58.588 41.667 17.76 0.00 36.83 4.79
3233 5830 5.047306 ACACTTGAATATTCACTCTCGACCA 60.047 40.000 17.76 0.00 36.83 4.02
3234 5831 5.518128 CACTTGAATATTCACTCTCGACCAG 59.482 44.000 17.76 11.23 36.83 4.00
3235 5832 5.419155 ACTTGAATATTCACTCTCGACCAGA 59.581 40.000 17.76 0.00 36.83 3.86
3241 5838 4.251246 CTCTCGACCAGAGGAGGG 57.749 66.667 0.00 0.00 44.75 4.30
3242 5839 1.304952 CTCTCGACCAGAGGAGGGT 59.695 63.158 0.00 0.00 44.75 4.34
3244 5841 0.612174 TCTCGACCAGAGGAGGGTTG 60.612 60.000 0.00 0.00 46.82 3.77
3245 5842 0.612174 CTCGACCAGAGGAGGGTTGA 60.612 60.000 0.00 0.00 44.69 3.18
3246 5843 0.178944 TCGACCAGAGGAGGGTTGAA 60.179 55.000 0.00 0.00 44.08 2.69
3248 5845 1.406069 CGACCAGAGGAGGGTTGAATG 60.406 57.143 0.00 0.00 41.55 2.67
3249 5846 0.995024 ACCAGAGGAGGGTTGAATGG 59.005 55.000 0.00 0.00 34.10 3.16
3250 5847 1.289160 CCAGAGGAGGGTTGAATGGA 58.711 55.000 0.00 0.00 0.00 3.41
3252 5849 2.422519 CCAGAGGAGGGTTGAATGGATG 60.423 54.545 0.00 0.00 0.00 3.51
3255 5852 3.790408 AGAGGAGGGTTGAATGGATGAAT 59.210 43.478 0.00 0.00 0.00 2.57
3257 5854 5.614402 AGAGGAGGGTTGAATGGATGAATAT 59.386 40.000 0.00 0.00 0.00 1.28
3260 5857 6.070656 GGAGGGTTGAATGGATGAATATTCA 58.929 40.000 20.07 20.07 40.46 2.57
3261 5858 6.015940 GGAGGGTTGAATGGATGAATATTCAC 60.016 42.308 20.19 13.40 41.51 3.18
3263 5860 6.774656 AGGGTTGAATGGATGAATATTCACTC 59.225 38.462 20.19 16.71 41.51 3.51
3264 5861 6.774656 GGGTTGAATGGATGAATATTCACTCT 59.225 38.462 20.19 5.00 41.51 3.24
3266 5863 8.689972 GGTTGAATGGATGAATATTCACTCTTT 58.310 33.333 20.19 16.92 41.51 2.52
3269 5866 7.503566 TGAATGGATGAATATTCACTCTTTCCC 59.496 37.037 23.25 13.65 40.49 3.97
3270 5867 5.368145 TGGATGAATATTCACTCTTTCCCG 58.632 41.667 23.25 0.00 40.49 5.14
3271 5868 4.214332 GGATGAATATTCACTCTTTCCCGC 59.786 45.833 20.19 0.00 40.49 6.13
3273 5870 2.240493 ATATTCACTCTTTCCCGCCG 57.760 50.000 0.00 0.00 0.00 6.46
3274 5871 0.461339 TATTCACTCTTTCCCGCCGC 60.461 55.000 0.00 0.00 0.00 6.53
3275 5872 2.463589 ATTCACTCTTTCCCGCCGCA 62.464 55.000 0.00 0.00 0.00 5.69
3277 5874 3.936203 ACTCTTTCCCGCCGCACA 61.936 61.111 0.00 0.00 0.00 4.57
3278 5875 2.668212 CTCTTTCCCGCCGCACAA 60.668 61.111 0.00 0.00 0.00 3.33
3280 5877 2.187599 CTCTTTCCCGCCGCACAAAG 62.188 60.000 0.00 0.00 0.00 2.77
3282 5879 4.947147 TTCCCGCCGCACAAAGCT 62.947 61.111 0.00 0.00 42.61 3.74
3285 5882 4.093952 CCGCCGCACAAAGCTCAG 62.094 66.667 0.00 0.00 42.61 3.35
3286 5883 4.748679 CGCCGCACAAAGCTCAGC 62.749 66.667 0.00 0.00 42.61 4.26
3287 5884 3.663176 GCCGCACAAAGCTCAGCA 61.663 61.111 0.00 0.00 42.61 4.41
3288 5885 3.033184 CCGCACAAAGCTCAGCAA 58.967 55.556 0.00 0.00 42.61 3.91
3289 5886 1.582968 CCGCACAAAGCTCAGCAAT 59.417 52.632 0.00 0.00 42.61 3.56
3290 5887 0.731514 CCGCACAAAGCTCAGCAATG 60.732 55.000 0.00 0.00 42.61 2.82
3291 5888 0.731514 CGCACAAAGCTCAGCAATGG 60.732 55.000 0.00 0.00 42.61 3.16
3292 5889 0.316204 GCACAAAGCTCAGCAATGGT 59.684 50.000 0.00 0.00 41.15 3.55
3293 5890 1.933500 GCACAAAGCTCAGCAATGGTG 60.934 52.381 6.03 6.03 41.15 4.17
3294 5891 0.963962 ACAAAGCTCAGCAATGGTGG 59.036 50.000 12.79 4.72 0.00 4.61
3295 5892 0.963962 CAAAGCTCAGCAATGGTGGT 59.036 50.000 12.79 0.00 35.28 4.16
3310 6138 1.762858 TGGTGTCGGTGACCTTGGA 60.763 57.895 0.00 0.00 34.26 3.53
3311 6139 1.004918 GGTGTCGGTGACCTTGGAG 60.005 63.158 0.00 0.00 0.00 3.86
3312 6140 1.004918 GTGTCGGTGACCTTGGAGG 60.005 63.158 0.00 0.00 42.49 4.30
3318 6146 3.256960 TGACCTTGGAGGCCACCC 61.257 66.667 17.45 12.02 39.63 4.61
3319 6147 3.256960 GACCTTGGAGGCCACCCA 61.257 66.667 17.45 14.71 39.63 4.51
3320 6148 3.569200 GACCTTGGAGGCCACCCAC 62.569 68.421 17.45 2.02 39.63 4.61
3321 6149 4.366684 CCTTGGAGGCCACCCACC 62.367 72.222 17.45 6.39 41.79 4.61
3322 6150 3.260100 CTTGGAGGCCACCCACCT 61.260 66.667 17.45 0.00 41.94 4.00
3329 6157 4.048470 GCCACCCACCTCCCCTTC 62.048 72.222 0.00 0.00 0.00 3.46
3330 6158 2.531685 CCACCCACCTCCCCTTCA 60.532 66.667 0.00 0.00 0.00 3.02
3331 6159 2.757077 CACCCACCTCCCCTTCAC 59.243 66.667 0.00 0.00 0.00 3.18
3332 6160 2.153401 CACCCACCTCCCCTTCACA 61.153 63.158 0.00 0.00 0.00 3.58
3333 6161 1.151587 ACCCACCTCCCCTTCACAT 60.152 57.895 0.00 0.00 0.00 3.21
3334 6162 1.208165 ACCCACCTCCCCTTCACATC 61.208 60.000 0.00 0.00 0.00 3.06
3335 6163 0.916358 CCCACCTCCCCTTCACATCT 60.916 60.000 0.00 0.00 0.00 2.90
3336 6164 0.254178 CCACCTCCCCTTCACATCTG 59.746 60.000 0.00 0.00 0.00 2.90
3337 6165 0.393537 CACCTCCCCTTCACATCTGC 60.394 60.000 0.00 0.00 0.00 4.26
3338 6166 0.842030 ACCTCCCCTTCACATCTGCA 60.842 55.000 0.00 0.00 0.00 4.41
3340 6168 1.476471 CCTCCCCTTCACATCTGCATC 60.476 57.143 0.00 0.00 0.00 3.91
3342 6170 0.816825 CCCCTTCACATCTGCATCGG 60.817 60.000 0.00 0.00 0.00 4.18
3343 6171 1.442526 CCCTTCACATCTGCATCGGC 61.443 60.000 0.00 0.00 41.68 5.54
3345 6173 0.745486 CTTCACATCTGCATCGGCCA 60.745 55.000 2.24 0.00 40.13 5.36
3346 6174 0.107066 TTCACATCTGCATCGGCCAT 60.107 50.000 2.24 0.00 40.13 4.40
3347 6175 0.107066 TCACATCTGCATCGGCCATT 60.107 50.000 2.24 0.00 40.13 3.16
3348 6176 0.030235 CACATCTGCATCGGCCATTG 59.970 55.000 2.24 0.00 40.13 2.82
3349 6177 0.107066 ACATCTGCATCGGCCATTGA 60.107 50.000 2.24 0.00 40.13 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.418328 TTTGGGATCGGGCACGGG 62.418 66.667 9.32 0.00 41.39 5.28
7 8 2.824041 CTTTGGGATCGGGCACGG 60.824 66.667 9.32 0.00 41.39 4.94
8 9 2.824041 CCTTTGGGATCGGGCACG 60.824 66.667 0.00 0.00 36.62 5.34
9 10 3.140814 GCCTTTGGGATCGGGCAC 61.141 66.667 0.00 0.00 43.59 5.01
10 11 4.440829 GGCCTTTGGGATCGGGCA 62.441 66.667 0.00 0.00 45.68 5.36
11 12 3.662117 AAGGCCTTTGGGATCGGGC 62.662 63.158 13.78 2.41 43.42 6.13
12 13 1.453928 GAAGGCCTTTGGGATCGGG 60.454 63.158 21.54 0.00 33.58 5.14
13 14 1.453928 GGAAGGCCTTTGGGATCGG 60.454 63.158 21.54 0.00 33.58 4.18
14 15 1.819632 CGGAAGGCCTTTGGGATCG 60.820 63.158 21.54 12.70 33.58 3.69
15 16 2.121538 GCGGAAGGCCTTTGGGATC 61.122 63.158 21.54 5.23 34.80 3.36
16 17 2.043953 GCGGAAGGCCTTTGGGAT 60.044 61.111 21.54 0.00 34.80 3.85
17 18 4.715523 CGCGGAAGGCCTTTGGGA 62.716 66.667 21.54 0.00 38.94 4.37
47 48 4.208686 CAGAGTAGGCGGCCGTCC 62.209 72.222 29.22 26.92 0.00 4.79
48 49 4.208686 CCAGAGTAGGCGGCCGTC 62.209 72.222 25.39 25.39 0.00 4.79
56 57 1.810532 GGAGTGTCGCCAGAGTAGG 59.189 63.158 0.00 0.00 0.00 3.18
57 58 1.429825 CGGAGTGTCGCCAGAGTAG 59.570 63.158 0.00 0.00 0.00 2.57
58 59 2.044555 CCGGAGTGTCGCCAGAGTA 61.045 63.158 0.00 0.00 0.00 2.59
59 60 3.374402 CCGGAGTGTCGCCAGAGT 61.374 66.667 0.00 0.00 0.00 3.24
60 61 4.803426 GCCGGAGTGTCGCCAGAG 62.803 72.222 5.05 0.00 0.00 3.35
100 101 2.210013 TATAGGCTGGCCGGAGCAG 61.210 63.158 18.31 0.00 41.08 4.24
101 102 2.123033 TATAGGCTGGCCGGAGCA 60.123 61.111 18.31 0.00 41.08 4.26
102 103 2.210711 AGTATAGGCTGGCCGGAGC 61.211 63.158 18.31 11.78 41.95 4.70
103 104 1.115930 ACAGTATAGGCTGGCCGGAG 61.116 60.000 18.31 0.00 40.59 4.63
104 105 1.075525 ACAGTATAGGCTGGCCGGA 60.076 57.895 18.31 0.00 40.59 5.14
105 106 1.069765 CACAGTATAGGCTGGCCGG 59.930 63.158 7.41 7.41 40.59 6.13
106 107 0.464036 TTCACAGTATAGGCTGGCCG 59.536 55.000 5.93 0.00 40.59 6.13
107 108 2.938956 ATTCACAGTATAGGCTGGCC 57.061 50.000 3.00 3.00 40.59 5.36
108 109 5.611374 TCTAAATTCACAGTATAGGCTGGC 58.389 41.667 0.00 0.00 40.59 4.85
109 110 6.183361 ACCTCTAAATTCACAGTATAGGCTGG 60.183 42.308 0.00 0.00 40.59 4.85
110 111 6.821388 ACCTCTAAATTCACAGTATAGGCTG 58.179 40.000 0.00 0.00 41.92 4.85
111 112 7.439108 AACCTCTAAATTCACAGTATAGGCT 57.561 36.000 0.00 0.00 0.00 4.58
112 113 7.769044 TGAAACCTCTAAATTCACAGTATAGGC 59.231 37.037 0.00 0.00 0.00 3.93
133 134 2.335011 GCGCAAGGGTGGTGAAAC 59.665 61.111 0.30 0.00 38.28 2.78
134 135 3.283684 CGCGCAAGGGTGGTGAAA 61.284 61.111 8.75 0.00 46.48 2.69
144 145 4.531912 CAGCAGATGCCGCGCAAG 62.532 66.667 8.75 0.00 43.62 4.01
147 148 4.233635 CTTCAGCAGATGCCGCGC 62.234 66.667 0.00 0.00 43.38 6.86
148 149 2.393768 AACTTCAGCAGATGCCGCG 61.394 57.895 0.00 0.00 43.38 6.46
149 150 1.136147 CAACTTCAGCAGATGCCGC 59.864 57.895 0.14 0.00 43.38 6.53
150 151 1.136147 GCAACTTCAGCAGATGCCG 59.864 57.895 0.14 0.00 43.86 5.69
153 154 4.502016 TCTTAGAGCAACTTCAGCAGATG 58.498 43.478 0.00 0.00 0.00 2.90
154 155 4.757594 CTCTTAGAGCAACTTCAGCAGAT 58.242 43.478 0.00 0.00 0.00 2.90
155 156 4.185467 CTCTTAGAGCAACTTCAGCAGA 57.815 45.455 0.00 0.00 0.00 4.26
168 169 4.274147 TCTCTACCACAAGGCTCTTAGAG 58.726 47.826 4.63 4.63 37.85 2.43
169 170 4.317530 TCTCTACCACAAGGCTCTTAGA 57.682 45.455 0.00 0.00 39.06 2.10
170 171 5.606348 AATCTCTACCACAAGGCTCTTAG 57.394 43.478 0.00 0.00 39.06 2.18
171 172 5.483937 TCAAATCTCTACCACAAGGCTCTTA 59.516 40.000 0.00 0.00 39.06 2.10
172 173 4.287067 TCAAATCTCTACCACAAGGCTCTT 59.713 41.667 0.00 0.00 39.06 2.85
173 174 3.840666 TCAAATCTCTACCACAAGGCTCT 59.159 43.478 0.00 0.00 39.06 4.09
174 175 4.207891 TCAAATCTCTACCACAAGGCTC 57.792 45.455 0.00 0.00 39.06 4.70
175 176 4.640771 TTCAAATCTCTACCACAAGGCT 57.359 40.909 0.00 0.00 39.06 4.58
176 177 5.241728 AGTTTTCAAATCTCTACCACAAGGC 59.758 40.000 0.00 0.00 39.06 4.35
177 178 6.884280 AGTTTTCAAATCTCTACCACAAGG 57.116 37.500 0.00 0.00 42.21 3.61
178 179 9.586435 AAAAAGTTTTCAAATCTCTACCACAAG 57.414 29.630 0.32 0.00 0.00 3.16
201 202 6.042781 TGCTTTGGACTAGGACTAGAGAAAAA 59.957 38.462 13.00 7.06 36.97 1.94
202 203 5.542635 TGCTTTGGACTAGGACTAGAGAAAA 59.457 40.000 13.00 8.46 36.97 2.29
203 204 5.084519 TGCTTTGGACTAGGACTAGAGAAA 58.915 41.667 13.00 7.41 36.97 2.52
204 205 4.673968 TGCTTTGGACTAGGACTAGAGAA 58.326 43.478 13.00 0.59 36.97 2.87
205 206 4.317530 TGCTTTGGACTAGGACTAGAGA 57.682 45.455 13.00 0.00 36.97 3.10
206 207 4.142049 CCTTGCTTTGGACTAGGACTAGAG 60.142 50.000 13.00 1.24 36.97 2.43
207 208 3.769844 CCTTGCTTTGGACTAGGACTAGA 59.230 47.826 13.00 0.00 36.97 2.43
208 209 3.515901 ACCTTGCTTTGGACTAGGACTAG 59.484 47.826 4.86 4.86 39.04 2.57
209 210 3.260884 CACCTTGCTTTGGACTAGGACTA 59.739 47.826 0.00 0.00 0.00 2.59
210 211 2.039084 CACCTTGCTTTGGACTAGGACT 59.961 50.000 0.00 0.00 0.00 3.85
211 212 2.427506 CACCTTGCTTTGGACTAGGAC 58.572 52.381 0.00 0.00 0.00 3.85
212 213 1.271379 GCACCTTGCTTTGGACTAGGA 60.271 52.381 0.00 0.00 40.96 2.94
213 214 1.168714 GCACCTTGCTTTGGACTAGG 58.831 55.000 0.00 0.00 40.96 3.02
214 215 1.896220 TGCACCTTGCTTTGGACTAG 58.104 50.000 0.00 0.00 45.31 2.57
215 216 2.229792 CTTGCACCTTGCTTTGGACTA 58.770 47.619 0.00 0.00 45.31 2.59
216 217 1.035139 CTTGCACCTTGCTTTGGACT 58.965 50.000 0.00 0.00 45.31 3.85
217 218 0.598419 GCTTGCACCTTGCTTTGGAC 60.598 55.000 0.00 0.00 45.31 4.02
218 219 1.042003 TGCTTGCACCTTGCTTTGGA 61.042 50.000 0.00 0.00 45.31 3.53
219 220 0.034337 ATGCTTGCACCTTGCTTTGG 59.966 50.000 0.00 0.00 45.31 3.28
220 221 1.144969 CATGCTTGCACCTTGCTTTG 58.855 50.000 0.00 0.00 45.31 2.77
221 222 0.034337 CCATGCTTGCACCTTGCTTT 59.966 50.000 0.00 0.00 45.31 3.51
248 249 7.867403 GGTCAACACATAACAGAAATGATTTGT 59.133 33.333 0.00 0.00 0.00 2.83
268 269 0.938168 AGCTTTCGTCGACGGTCAAC 60.938 55.000 35.05 21.15 40.29 3.18
333 338 5.534407 TGCTCGTCTTTAAGAATACACACA 58.466 37.500 0.00 0.00 0.00 3.72
362 367 1.070758 TGAGTTGACTTGACTCTGGCC 59.929 52.381 0.00 0.00 43.07 5.36
393 398 1.699656 CCAAGCCAACGAGATCTGCG 61.700 60.000 0.00 6.49 0.00 5.18
408 421 6.317789 TCAGCTTGATTTGTAGAAACCAAG 57.682 37.500 13.86 13.86 35.44 3.61
492 507 0.179009 AGCAGCTGTGAAGAGCCAAA 60.179 50.000 16.64 0.00 40.08 3.28
496 511 1.999024 GAAGTAGCAGCTGTGAAGAGC 59.001 52.381 16.64 0.00 39.46 4.09
514 529 4.733077 ATCGAATCCTCCCTCTCTAGAA 57.267 45.455 0.00 0.00 0.00 2.10
515 530 4.507691 GGAATCGAATCCTCCCTCTCTAGA 60.508 50.000 12.50 0.00 36.50 2.43
516 531 3.761752 GGAATCGAATCCTCCCTCTCTAG 59.238 52.174 12.50 0.00 36.50 2.43
517 532 3.500654 GGGAATCGAATCCTCCCTCTCTA 60.501 52.174 18.82 0.00 44.81 2.43
518 533 2.604139 GGAATCGAATCCTCCCTCTCT 58.396 52.381 12.50 0.00 36.50 3.10
519 534 1.621317 GGGAATCGAATCCTCCCTCTC 59.379 57.143 18.82 0.00 44.81 3.20
520 535 1.723288 GGGAATCGAATCCTCCCTCT 58.277 55.000 18.82 0.00 44.81 3.69
545 560 7.583898 CTCTGACCTGGAGAAGATGGAACAC 62.584 52.000 0.00 0.00 35.13 3.32
546 561 5.600226 CTCTGACCTGGAGAAGATGGAACA 61.600 50.000 0.00 0.00 36.29 3.18
547 562 2.834549 TCTGACCTGGAGAAGATGGAAC 59.165 50.000 0.00 0.00 0.00 3.62
548 563 3.102972 CTCTGACCTGGAGAAGATGGAA 58.897 50.000 0.00 0.00 33.03 3.53
549 564 2.744760 CTCTGACCTGGAGAAGATGGA 58.255 52.381 0.00 0.00 33.03 3.41
550 565 1.138661 GCTCTGACCTGGAGAAGATGG 59.861 57.143 0.00 0.00 33.03 3.51
551 566 2.109774 AGCTCTGACCTGGAGAAGATG 58.890 52.381 0.00 0.00 33.03 2.90
552 567 2.548464 AGCTCTGACCTGGAGAAGAT 57.452 50.000 0.00 0.00 33.03 2.40
553 568 2.317371 AAGCTCTGACCTGGAGAAGA 57.683 50.000 0.00 0.00 33.03 2.87
554 569 3.415457 AAAAGCTCTGACCTGGAGAAG 57.585 47.619 0.00 0.00 33.03 2.85
555 570 3.864789 AAAAAGCTCTGACCTGGAGAA 57.135 42.857 0.00 0.00 33.03 2.87
556 571 4.160329 TCTAAAAAGCTCTGACCTGGAGA 58.840 43.478 0.00 0.00 33.03 3.71
557 572 4.543590 TCTAAAAAGCTCTGACCTGGAG 57.456 45.455 0.00 0.00 0.00 3.86
558 573 4.974645 TTCTAAAAAGCTCTGACCTGGA 57.025 40.909 0.00 0.00 0.00 3.86
571 586 6.699575 AAGCAGCTTCTCAGTTTCTAAAAA 57.300 33.333 0.21 0.00 0.00 1.94
581 596 4.564041 TCTGAAACTAAGCAGCTTCTCAG 58.436 43.478 12.07 17.79 29.78 3.35
653 669 1.599071 CGCGTCTAAACATGCATGGAT 59.401 47.619 29.41 19.53 0.00 3.41
705 723 2.045045 CCGCTGGCATCCAAGGAA 60.045 61.111 0.00 0.00 34.63 3.36
723 741 3.636231 CTTGGCCTCCACCACCGA 61.636 66.667 3.32 0.00 40.19 4.69
901 930 5.480422 TGTTTACCAGAGCAAGACAGATCTA 59.520 40.000 0.00 0.00 31.46 1.98
926 955 4.860802 TGTATGGATGGTCACAAATCCT 57.139 40.909 9.55 0.27 42.51 3.24
942 971 4.024556 GCTACAAGGCACAAGCTATGTATG 60.025 45.833 0.00 0.00 41.46 2.39
943 972 4.130118 GCTACAAGGCACAAGCTATGTAT 58.870 43.478 0.00 0.00 41.46 2.29
944 973 3.055458 TGCTACAAGGCACAAGCTATGTA 60.055 43.478 0.00 0.00 41.46 2.29
945 974 2.290260 TGCTACAAGGCACAAGCTATGT 60.290 45.455 0.00 0.00 45.34 2.29
979 1008 5.105877 CCATTTCTGATGATTGAGCACAAGT 60.106 40.000 2.37 0.00 39.46 3.16
985 1014 2.615447 TCGCCATTTCTGATGATTGAGC 59.385 45.455 0.00 0.00 0.00 4.26
986 1015 3.302935 CGTCGCCATTTCTGATGATTGAG 60.303 47.826 0.00 0.00 0.00 3.02
1113 1145 0.250945 TTCCAAATGCGCCTGTACCA 60.251 50.000 4.18 0.00 0.00 3.25
1341 1394 8.103305 ACCAACTTTACTACATTCTCATGATGT 58.897 33.333 5.78 5.78 34.11 3.06
1404 1457 8.970020 TCTGCAACAATATATCTTCCATTGTTT 58.030 29.630 9.74 0.00 45.78 2.83
1603 1839 0.179234 TTCTGAAGCGTGTGTCCCAA 59.821 50.000 0.00 0.00 0.00 4.12
1620 1856 2.158564 TGGCAGATCCCCTTGATGATTC 60.159 50.000 2.11 0.00 32.41 2.52
1674 1910 6.439636 TCTCAGGTTTAAGATCCATATGGG 57.560 41.667 21.78 3.43 35.41 4.00
1703 1939 3.558746 GGGGTCATCTTATCATCCAGCAG 60.559 52.174 0.00 0.00 0.00 4.24
1759 1995 2.404923 TCCGTGTTTGTTCTTGACCA 57.595 45.000 0.00 0.00 0.00 4.02
1828 2064 9.672086 CTTCATAAAGACGGAACAAAATGTTAA 57.328 29.630 0.00 0.00 36.23 2.01
1846 2082 8.196771 AGAACAAAATGCAGTTCACTTCATAAA 58.803 29.630 16.22 0.00 44.94 1.40
1936 2173 0.103937 CTTGGTGGAGATCTCGCCTC 59.896 60.000 25.61 12.95 36.72 4.70
1940 2177 2.095461 TCTGACTTGGTGGAGATCTCG 58.905 52.381 16.46 4.19 0.00 4.04
2100 2337 8.579850 AAACCAATTGTATCATGAGCTTCTAA 57.420 30.769 4.43 0.00 0.00 2.10
2101 2338 9.851686 ATAAACCAATTGTATCATGAGCTTCTA 57.148 29.630 4.43 0.00 0.00 2.10
2102 2339 8.757982 ATAAACCAATTGTATCATGAGCTTCT 57.242 30.769 4.43 0.00 0.00 2.85
2426 2858 6.381994 CCTGGGCCATTGAGCAATATTATATT 59.618 38.462 6.72 0.00 0.00 1.28
2548 2980 4.460263 TGGTTCTGCAGATGTTAAGTGTT 58.540 39.130 19.04 0.00 0.00 3.32
2579 3011 1.202110 CGACCAGCTGAAATGCATCAC 60.202 52.381 17.39 0.00 34.99 3.06
2582 3014 2.401583 TACGACCAGCTGAAATGCAT 57.598 45.000 17.39 0.00 34.99 3.96
2598 3055 9.830294 TTCCATATATAGTGTACGAATGTTACG 57.170 33.333 0.00 0.00 0.00 3.18
2606 3063 8.913487 TCTGAAGTTCCATATATAGTGTACGA 57.087 34.615 0.00 0.00 0.00 3.43
2622 3079 4.693095 GTGGAAACTGGAGATCTGAAGTTC 59.307 45.833 16.29 11.29 31.81 3.01
2625 3082 3.257393 CGTGGAAACTGGAGATCTGAAG 58.743 50.000 0.00 0.00 0.00 3.02
2799 4394 8.380644 CGTGTTCTTATTGGTACTGACATTAAG 58.619 37.037 0.00 0.28 35.06 1.85
2849 4444 1.391577 TGATGCCACATGGGAAATCG 58.608 50.000 0.00 0.00 39.60 3.34
2889 5252 7.326789 GTCATGCCAATATATTGTTGCATACAC 59.673 37.037 27.49 23.67 40.90 2.90
2910 5273 8.751302 TCAAAGAAATCATTGTTGATGTCATG 57.249 30.769 8.45 7.07 45.57 3.07
2911 5274 9.938280 AATCAAAGAAATCATTGTTGATGTCAT 57.062 25.926 8.45 0.00 45.57 3.06
2948 5311 2.420372 GGCCGGAGAGATGAAACTTTTC 59.580 50.000 5.05 0.00 37.69 2.29
2949 5312 2.040412 AGGCCGGAGAGATGAAACTTTT 59.960 45.455 5.05 0.00 0.00 2.27
2950 5313 1.630878 AGGCCGGAGAGATGAAACTTT 59.369 47.619 5.05 0.00 0.00 2.66
2951 5314 1.280457 AGGCCGGAGAGATGAAACTT 58.720 50.000 5.05 0.00 0.00 2.66
2952 5315 2.160721 TAGGCCGGAGAGATGAAACT 57.839 50.000 5.05 0.00 0.00 2.66
2953 5316 2.630580 AGATAGGCCGGAGAGATGAAAC 59.369 50.000 5.05 0.00 0.00 2.78
2954 5317 2.964209 AGATAGGCCGGAGAGATGAAA 58.036 47.619 5.05 0.00 0.00 2.69
2957 5320 2.242926 TCAAGATAGGCCGGAGAGATG 58.757 52.381 5.05 0.00 0.00 2.90
2958 5321 2.685106 TCAAGATAGGCCGGAGAGAT 57.315 50.000 5.05 0.00 0.00 2.75
2959 5322 2.630098 CAATCAAGATAGGCCGGAGAGA 59.370 50.000 5.05 0.00 0.00 3.10
2960 5323 2.630098 TCAATCAAGATAGGCCGGAGAG 59.370 50.000 5.05 0.00 0.00 3.20
2961 5324 2.677914 TCAATCAAGATAGGCCGGAGA 58.322 47.619 5.05 0.00 0.00 3.71
2962 5325 3.692257 ATCAATCAAGATAGGCCGGAG 57.308 47.619 5.05 0.00 0.00 4.63
2963 5326 5.338381 GGATTATCAATCAAGATAGGCCGGA 60.338 44.000 5.05 0.00 39.71 5.14
2964 5327 4.878397 GGATTATCAATCAAGATAGGCCGG 59.122 45.833 0.00 0.00 39.71 6.13
2965 5328 4.568359 CGGATTATCAATCAAGATAGGCCG 59.432 45.833 0.00 0.00 39.87 6.13
2966 5329 4.878397 CCGGATTATCAATCAAGATAGGCC 59.122 45.833 0.00 0.00 39.71 5.19
2967 5330 5.491982 ACCGGATTATCAATCAAGATAGGC 58.508 41.667 9.46 0.00 39.71 3.93
2968 5331 7.661437 TGAAACCGGATTATCAATCAAGATAGG 59.339 37.037 9.46 0.00 39.71 2.57
2969 5332 8.499162 GTGAAACCGGATTATCAATCAAGATAG 58.501 37.037 9.46 0.00 39.71 2.08
2970 5333 8.378172 GTGAAACCGGATTATCAATCAAGATA 57.622 34.615 9.46 0.00 39.71 1.98
2972 5335 6.677781 GTGAAACCGGATTATCAATCAAGA 57.322 37.500 9.46 0.00 39.71 3.02
2989 5441 4.976116 CCAGAAAGAAATCAACGGTGAAAC 59.024 41.667 7.51 1.64 37.30 2.78
2996 5448 5.237344 AGTTCTCACCAGAAAGAAATCAACG 59.763 40.000 0.00 0.00 40.49 4.10
2997 5449 6.625873 AGTTCTCACCAGAAAGAAATCAAC 57.374 37.500 0.00 0.00 40.49 3.18
2998 5450 7.339212 TCAAAGTTCTCACCAGAAAGAAATCAA 59.661 33.333 0.00 0.00 40.49 2.57
2999 5451 6.828273 TCAAAGTTCTCACCAGAAAGAAATCA 59.172 34.615 0.00 0.00 40.49 2.57
3000 5452 7.264373 TCAAAGTTCTCACCAGAAAGAAATC 57.736 36.000 0.00 0.00 40.49 2.17
3001 5453 7.645058 TTCAAAGTTCTCACCAGAAAGAAAT 57.355 32.000 0.00 0.00 40.49 2.17
3003 5455 6.659242 AGTTTCAAAGTTCTCACCAGAAAGAA 59.341 34.615 0.00 0.00 40.49 2.52
3005 5457 6.442513 AGTTTCAAAGTTCTCACCAGAAAG 57.557 37.500 0.00 0.00 40.49 2.62
3006 5458 7.335627 TCTAGTTTCAAAGTTCTCACCAGAAA 58.664 34.615 0.00 0.00 40.49 2.52
3008 5460 6.479972 TCTAGTTTCAAAGTTCTCACCAGA 57.520 37.500 0.00 0.00 0.00 3.86
3009 5461 6.931281 TGATCTAGTTTCAAAGTTCTCACCAG 59.069 38.462 0.00 0.00 0.00 4.00
3011 5463 6.706270 TGTGATCTAGTTTCAAAGTTCTCACC 59.294 38.462 9.82 0.00 0.00 4.02
3012 5464 7.715265 TGTGATCTAGTTTCAAAGTTCTCAC 57.285 36.000 0.00 7.05 0.00 3.51
3013 5465 7.933577 ACATGTGATCTAGTTTCAAAGTTCTCA 59.066 33.333 0.00 0.00 0.00 3.27
3014 5466 8.316640 ACATGTGATCTAGTTTCAAAGTTCTC 57.683 34.615 0.00 0.00 0.00 2.87
3015 5467 8.562892 CAACATGTGATCTAGTTTCAAAGTTCT 58.437 33.333 0.00 0.00 0.00 3.01
3016 5468 7.805071 CCAACATGTGATCTAGTTTCAAAGTTC 59.195 37.037 0.00 0.00 0.00 3.01
3017 5469 7.285401 ACCAACATGTGATCTAGTTTCAAAGTT 59.715 33.333 0.00 3.90 0.00 2.66
3018 5470 6.772716 ACCAACATGTGATCTAGTTTCAAAGT 59.227 34.615 0.00 0.00 0.00 2.66
3019 5471 7.206981 ACCAACATGTGATCTAGTTTCAAAG 57.793 36.000 0.00 0.00 0.00 2.77
3020 5472 8.729756 CATACCAACATGTGATCTAGTTTCAAA 58.270 33.333 0.00 0.00 0.00 2.69
3021 5473 7.882791 ACATACCAACATGTGATCTAGTTTCAA 59.117 33.333 0.00 0.00 37.74 2.69
3022 5474 7.394016 ACATACCAACATGTGATCTAGTTTCA 58.606 34.615 0.00 0.00 37.74 2.69
3030 5627 4.864247 GGCAAAACATACCAACATGTGATC 59.136 41.667 0.00 0.00 39.10 2.92
3033 5630 3.987547 TGGCAAAACATACCAACATGTG 58.012 40.909 0.00 0.00 39.10 3.21
3064 5661 3.928727 AACCTGACAAGTATCGACGAA 57.071 42.857 0.00 0.00 0.00 3.85
3065 5662 4.637091 TCATAACCTGACAAGTATCGACGA 59.363 41.667 0.00 0.00 0.00 4.20
3066 5663 4.916870 TCATAACCTGACAAGTATCGACG 58.083 43.478 0.00 0.00 0.00 5.12
3068 5665 4.202121 GCCTCATAACCTGACAAGTATCGA 60.202 45.833 0.00 0.00 0.00 3.59
3070 5667 4.811557 GTGCCTCATAACCTGACAAGTATC 59.188 45.833 0.00 0.00 0.00 2.24
3071 5668 4.471386 AGTGCCTCATAACCTGACAAGTAT 59.529 41.667 0.00 0.00 0.00 2.12
3074 5671 3.340814 AGTGCCTCATAACCTGACAAG 57.659 47.619 0.00 0.00 0.00 3.16
3075 5672 3.411446 CAAGTGCCTCATAACCTGACAA 58.589 45.455 0.00 0.00 0.00 3.18
3076 5673 2.290260 CCAAGTGCCTCATAACCTGACA 60.290 50.000 0.00 0.00 0.00 3.58
3077 5674 2.290323 ACCAAGTGCCTCATAACCTGAC 60.290 50.000 0.00 0.00 0.00 3.51
3079 5676 2.489329 CAACCAAGTGCCTCATAACCTG 59.511 50.000 0.00 0.00 0.00 4.00
3081 5678 2.488153 GACAACCAAGTGCCTCATAACC 59.512 50.000 0.00 0.00 0.00 2.85
3082 5679 3.146066 TGACAACCAAGTGCCTCATAAC 58.854 45.455 0.00 0.00 0.00 1.89
3083 5680 3.500448 TGACAACCAAGTGCCTCATAA 57.500 42.857 0.00 0.00 0.00 1.90
3084 5681 3.719268 ATGACAACCAAGTGCCTCATA 57.281 42.857 0.00 0.00 0.00 2.15
3085 5682 2.592102 ATGACAACCAAGTGCCTCAT 57.408 45.000 0.00 0.00 0.00 2.90
3086 5683 3.719268 ATATGACAACCAAGTGCCTCA 57.281 42.857 0.00 0.00 0.00 3.86
3087 5684 6.509418 TTTAATATGACAACCAAGTGCCTC 57.491 37.500 0.00 0.00 0.00 4.70
3088 5685 7.480760 AATTTAATATGACAACCAAGTGCCT 57.519 32.000 0.00 0.00 0.00 4.75
3089 5686 9.083080 GTTAATTTAATATGACAACCAAGTGCC 57.917 33.333 0.00 0.00 0.00 5.01
3090 5687 9.855021 AGTTAATTTAATATGACAACCAAGTGC 57.145 29.630 0.00 0.00 0.00 4.40
3098 5695 9.646427 GGCAACCAAGTTAATTTAATATGACAA 57.354 29.630 0.00 0.00 0.00 3.18
3099 5696 9.030452 AGGCAACCAAGTTAATTTAATATGACA 57.970 29.630 0.00 0.00 37.17 3.58
3100 5697 9.301153 CAGGCAACCAAGTTAATTTAATATGAC 57.699 33.333 0.00 0.00 37.17 3.06
3101 5698 8.474025 CCAGGCAACCAAGTTAATTTAATATGA 58.526 33.333 0.00 0.00 37.17 2.15
3102 5699 8.257306 ACCAGGCAACCAAGTTAATTTAATATG 58.743 33.333 0.00 0.00 37.17 1.78
3103 5700 8.374184 ACCAGGCAACCAAGTTAATTTAATAT 57.626 30.769 0.00 0.00 37.17 1.28
3104 5701 7.784470 ACCAGGCAACCAAGTTAATTTAATA 57.216 32.000 0.00 0.00 37.17 0.98
3105 5702 6.680148 ACCAGGCAACCAAGTTAATTTAAT 57.320 33.333 0.00 0.00 37.17 1.40
3106 5703 6.284459 CAACCAGGCAACCAAGTTAATTTAA 58.716 36.000 0.00 0.00 37.17 1.52
3107 5704 5.740513 GCAACCAGGCAACCAAGTTAATTTA 60.741 40.000 0.00 0.00 37.17 1.40
3108 5705 4.702831 CAACCAGGCAACCAAGTTAATTT 58.297 39.130 0.00 0.00 37.17 1.82
3109 5706 3.494223 GCAACCAGGCAACCAAGTTAATT 60.494 43.478 0.00 0.00 37.17 1.40
3110 5707 2.037121 GCAACCAGGCAACCAAGTTAAT 59.963 45.455 0.00 0.00 37.17 1.40
3111 5708 1.410882 GCAACCAGGCAACCAAGTTAA 59.589 47.619 0.00 0.00 37.17 2.01
3112 5709 1.036707 GCAACCAGGCAACCAAGTTA 58.963 50.000 0.00 0.00 37.17 2.24
3113 5710 0.975040 TGCAACCAGGCAACCAAGTT 60.975 50.000 0.00 0.00 41.65 2.66
3114 5711 1.381056 TGCAACCAGGCAACCAAGT 60.381 52.632 0.00 0.00 41.65 3.16
3115 5712 1.108727 TCTGCAACCAGGCAACCAAG 61.109 55.000 0.00 0.00 44.40 3.61
3116 5713 0.685785 TTCTGCAACCAGGCAACCAA 60.686 50.000 0.00 0.00 44.40 3.67
3117 5714 0.469705 ATTCTGCAACCAGGCAACCA 60.470 50.000 0.00 0.00 44.40 3.67
3118 5715 0.037975 CATTCTGCAACCAGGCAACC 60.038 55.000 0.00 0.00 44.40 3.77
3119 5716 0.668401 GCATTCTGCAACCAGGCAAC 60.668 55.000 0.00 0.00 44.40 4.17
3120 5717 1.667151 GCATTCTGCAACCAGGCAA 59.333 52.632 0.00 0.00 44.40 4.52
3121 5718 3.368822 GCATTCTGCAACCAGGCA 58.631 55.556 0.00 0.00 44.26 4.75
3127 5724 7.380253 GTGGTATACACTGGCATTCTGCAAC 62.380 48.000 5.01 0.00 45.52 4.17
3128 5725 5.399933 GTGGTATACACTGGCATTCTGCAA 61.400 45.833 5.01 0.00 45.52 4.08
3129 5726 3.930954 GTGGTATACACTGGCATTCTGCA 60.931 47.826 5.01 0.00 45.52 4.41
3130 5727 2.614057 GTGGTATACACTGGCATTCTGC 59.386 50.000 5.01 0.00 46.72 4.26
3140 5737 9.619741 GAAGCAAGTCTTCTGGTGGTATACACT 62.620 44.444 5.01 0.00 46.34 3.55
3141 5738 7.559406 GAAGCAAGTCTTCTGGTGGTATACAC 61.559 46.154 5.01 1.38 46.36 2.90
3142 5739 3.838317 AGCAAGTCTTCTGGTGGTATACA 59.162 43.478 5.01 0.00 0.00 2.29
3143 5740 4.473477 AGCAAGTCTTCTGGTGGTATAC 57.527 45.455 0.00 0.00 0.00 1.47
3144 5741 5.086104 GAAGCAAGTCTTCTGGTGGTATA 57.914 43.478 0.00 0.00 45.99 1.47
3145 5742 3.944087 GAAGCAAGTCTTCTGGTGGTAT 58.056 45.455 0.00 0.00 45.99 2.73
3146 5743 3.402628 GAAGCAAGTCTTCTGGTGGTA 57.597 47.619 0.00 0.00 45.99 3.25
3147 5744 2.262423 GAAGCAAGTCTTCTGGTGGT 57.738 50.000 0.00 0.00 45.99 4.16
3157 5754 3.815401 ACACAAGTACCATGAAGCAAGTC 59.185 43.478 0.00 0.00 0.00 3.01
3163 5760 5.056480 TCAACTCACACAAGTACCATGAAG 58.944 41.667 0.00 0.00 0.00 3.02
3167 5764 4.997395 GTCATCAACTCACACAAGTACCAT 59.003 41.667 0.00 0.00 0.00 3.55
3170 5767 5.050490 AGTGTCATCAACTCACACAAGTAC 58.950 41.667 4.39 0.00 42.48 2.73
3171 5768 5.069119 AGAGTGTCATCAACTCACACAAGTA 59.931 40.000 6.37 0.00 42.48 2.24
3172 5769 4.122776 GAGTGTCATCAACTCACACAAGT 58.877 43.478 4.39 0.00 42.48 3.16
3173 5770 4.375272 AGAGTGTCATCAACTCACACAAG 58.625 43.478 6.37 0.00 42.48 3.16
3174 5771 4.406648 AGAGTGTCATCAACTCACACAA 57.593 40.909 6.37 0.00 42.48 3.33
3175 5772 4.406648 AAGAGTGTCATCAACTCACACA 57.593 40.909 6.37 0.00 42.48 3.72
3176 5773 4.212214 GGAAAGAGTGTCATCAACTCACAC 59.788 45.833 6.37 0.00 40.70 3.82
3177 5774 4.380531 GGAAAGAGTGTCATCAACTCACA 58.619 43.478 6.37 0.00 34.94 3.58
3178 5775 3.748568 GGGAAAGAGTGTCATCAACTCAC 59.251 47.826 6.37 0.00 33.26 3.51
3179 5776 3.648067 AGGGAAAGAGTGTCATCAACTCA 59.352 43.478 6.37 0.00 33.26 3.41
3180 5777 4.278975 AGGGAAAGAGTGTCATCAACTC 57.721 45.455 0.00 0.00 0.00 3.01
3181 5778 6.176183 CAATAGGGAAAGAGTGTCATCAACT 58.824 40.000 0.00 0.00 0.00 3.16
3182 5779 5.940470 ACAATAGGGAAAGAGTGTCATCAAC 59.060 40.000 0.00 0.00 0.00 3.18
3183 5780 6.126863 ACAATAGGGAAAGAGTGTCATCAA 57.873 37.500 0.00 0.00 0.00 2.57
3184 5781 5.762179 ACAATAGGGAAAGAGTGTCATCA 57.238 39.130 0.00 0.00 0.00 3.07
3185 5782 7.606456 TGTTAACAATAGGGAAAGAGTGTCATC 59.394 37.037 5.64 0.00 0.00 2.92
3189 5786 6.838382 AGTGTTAACAATAGGGAAAGAGTGT 58.162 36.000 10.51 0.00 0.00 3.55
3190 5787 7.444183 TCAAGTGTTAACAATAGGGAAAGAGTG 59.556 37.037 10.51 0.40 0.00 3.51
3192 5789 7.979444 TCAAGTGTTAACAATAGGGAAAGAG 57.021 36.000 10.51 0.00 0.00 2.85
3205 5802 8.373992 GTCGAGAGTGAATATTCAAGTGTTAAC 58.626 37.037 19.55 9.32 39.21 2.01
3206 5803 7.544566 GGTCGAGAGTGAATATTCAAGTGTTAA 59.455 37.037 19.55 1.26 39.21 2.01
3208 5805 5.869888 GGTCGAGAGTGAATATTCAAGTGTT 59.130 40.000 19.55 4.58 39.21 3.32
3210 5807 5.410924 TGGTCGAGAGTGAATATTCAAGTG 58.589 41.667 19.55 8.52 39.21 3.16
3211 5808 5.419155 TCTGGTCGAGAGTGAATATTCAAGT 59.581 40.000 19.55 10.21 39.21 3.16
3212 5809 5.895928 TCTGGTCGAGAGTGAATATTCAAG 58.104 41.667 19.55 10.12 39.21 3.02
3214 5811 4.339530 CCTCTGGTCGAGAGTGAATATTCA 59.660 45.833 14.23 14.23 46.30 2.57
3215 5812 4.580995 TCCTCTGGTCGAGAGTGAATATTC 59.419 45.833 8.60 8.60 46.30 1.75
3217 5814 4.141287 CTCCTCTGGTCGAGAGTGAATAT 58.859 47.826 10.59 0.00 46.30 1.28
3221 5818 0.034960 CCTCCTCTGGTCGAGAGTGA 60.035 60.000 10.59 6.91 46.30 3.41
3222 5819 1.034838 CCCTCCTCTGGTCGAGAGTG 61.035 65.000 10.59 3.28 46.30 3.51
3223 5820 1.304952 CCCTCCTCTGGTCGAGAGT 59.695 63.158 10.59 0.00 46.30 3.24
3225 5822 0.612174 CAACCCTCCTCTGGTCGAGA 60.612 60.000 0.00 0.00 42.62 4.04
3229 5826 1.065126 CCATTCAACCCTCCTCTGGTC 60.065 57.143 0.00 0.00 34.15 4.02
3230 5827 0.995024 CCATTCAACCCTCCTCTGGT 59.005 55.000 0.00 0.00 37.85 4.00
3231 5828 1.289160 TCCATTCAACCCTCCTCTGG 58.711 55.000 0.00 0.00 0.00 3.86
3232 5829 2.507058 TCATCCATTCAACCCTCCTCTG 59.493 50.000 0.00 0.00 0.00 3.35
3233 5830 2.850833 TCATCCATTCAACCCTCCTCT 58.149 47.619 0.00 0.00 0.00 3.69
3234 5831 3.652057 TTCATCCATTCAACCCTCCTC 57.348 47.619 0.00 0.00 0.00 3.71
3235 5832 5.937492 ATATTCATCCATTCAACCCTCCT 57.063 39.130 0.00 0.00 0.00 3.69
3236 5833 6.015940 GTGAATATTCATCCATTCAACCCTCC 60.016 42.308 20.65 0.00 41.50 4.30
3238 5835 6.676558 AGTGAATATTCATCCATTCAACCCT 58.323 36.000 20.65 6.25 41.50 4.34
3239 5836 6.774656 AGAGTGAATATTCATCCATTCAACCC 59.225 38.462 20.65 4.10 41.50 4.11
3240 5837 7.814264 AGAGTGAATATTCATCCATTCAACC 57.186 36.000 20.65 4.59 41.50 3.77
3241 5838 9.727627 GAAAGAGTGAATATTCATCCATTCAAC 57.272 33.333 20.65 5.27 41.50 3.18
3242 5839 8.906867 GGAAAGAGTGAATATTCATCCATTCAA 58.093 33.333 20.65 0.00 41.50 2.69
3244 5841 7.308229 CGGGAAAGAGTGAATATTCATCCATTC 60.308 40.741 25.67 22.13 39.73 2.67
3245 5842 6.488006 CGGGAAAGAGTGAATATTCATCCATT 59.512 38.462 25.67 17.61 39.73 3.16
3246 5843 6.000219 CGGGAAAGAGTGAATATTCATCCAT 59.000 40.000 25.67 13.33 39.73 3.41
3248 5845 4.214332 GCGGGAAAGAGTGAATATTCATCC 59.786 45.833 20.65 20.33 39.73 3.51
3249 5846 4.214332 GGCGGGAAAGAGTGAATATTCATC 59.786 45.833 20.65 17.14 39.73 2.92
3250 5847 4.137543 GGCGGGAAAGAGTGAATATTCAT 58.862 43.478 20.65 10.17 39.73 2.57
3252 5849 2.544267 CGGCGGGAAAGAGTGAATATTC 59.456 50.000 8.60 8.60 0.00 1.75
3255 5852 0.461339 GCGGCGGGAAAGAGTGAATA 60.461 55.000 9.78 0.00 0.00 1.75
3257 5854 2.358247 GCGGCGGGAAAGAGTGAA 60.358 61.111 9.78 0.00 0.00 3.18
3260 5857 2.951475 TTTGTGCGGCGGGAAAGAGT 62.951 55.000 9.78 0.00 0.00 3.24
3261 5858 2.187599 CTTTGTGCGGCGGGAAAGAG 62.188 60.000 9.78 0.00 0.00 2.85
3263 5860 2.255252 CTTTGTGCGGCGGGAAAG 59.745 61.111 9.78 0.00 0.00 2.62
3264 5861 3.972276 GCTTTGTGCGGCGGGAAA 61.972 61.111 9.78 0.00 0.00 3.13
3273 5870 0.316204 ACCATTGCTGAGCTTTGTGC 59.684 50.000 5.83 0.00 43.29 4.57
3274 5871 1.336517 CCACCATTGCTGAGCTTTGTG 60.337 52.381 5.83 7.87 0.00 3.33
3275 5872 0.963962 CCACCATTGCTGAGCTTTGT 59.036 50.000 5.83 0.00 0.00 2.83
3277 5874 0.963962 CACCACCATTGCTGAGCTTT 59.036 50.000 5.83 0.00 0.00 3.51
3278 5875 0.178981 ACACCACCATTGCTGAGCTT 60.179 50.000 5.83 0.00 0.00 3.74
3280 5877 1.878775 GACACCACCATTGCTGAGC 59.121 57.895 0.00 0.00 0.00 4.26
3282 5879 1.302431 CCGACACCACCATTGCTGA 60.302 57.895 0.00 0.00 0.00 4.26
3285 5882 1.599518 TCACCGACACCACCATTGC 60.600 57.895 0.00 0.00 0.00 3.56
3286 5883 1.234615 GGTCACCGACACCACCATTG 61.235 60.000 0.00 0.00 33.68 2.82
3287 5884 1.072505 GGTCACCGACACCACCATT 59.927 57.895 0.00 0.00 33.68 3.16
3288 5885 1.415672 AAGGTCACCGACACCACCAT 61.416 55.000 0.00 0.00 36.23 3.55
3289 5886 2.067605 AAGGTCACCGACACCACCA 61.068 57.895 0.00 0.00 36.23 4.17
3290 5887 1.597027 CAAGGTCACCGACACCACC 60.597 63.158 0.00 0.00 36.23 4.61
3291 5888 1.597027 CCAAGGTCACCGACACCAC 60.597 63.158 0.00 0.00 36.23 4.16
3292 5889 1.754380 CTCCAAGGTCACCGACACCA 61.754 60.000 0.00 0.00 36.23 4.17
3293 5890 1.004918 CTCCAAGGTCACCGACACC 60.005 63.158 0.00 0.00 33.68 4.16
3294 5891 1.004918 CCTCCAAGGTCACCGACAC 60.005 63.158 0.00 0.00 33.68 3.67
3295 5892 2.879233 GCCTCCAAGGTCACCGACA 61.879 63.158 0.00 0.00 37.80 4.35
3296 5893 2.047179 GCCTCCAAGGTCACCGAC 60.047 66.667 0.00 0.00 37.80 4.79
3297 5894 3.319198 GGCCTCCAAGGTCACCGA 61.319 66.667 0.00 0.00 40.51 4.69
3298 5895 3.636231 TGGCCTCCAAGGTCACCG 61.636 66.667 3.32 0.00 43.71 4.94
3312 6140 4.048470 GAAGGGGAGGTGGGTGGC 62.048 72.222 0.00 0.00 0.00 5.01
3318 6146 0.393537 GCAGATGTGAAGGGGAGGTG 60.394 60.000 0.00 0.00 0.00 4.00
3319 6147 0.842030 TGCAGATGTGAAGGGGAGGT 60.842 55.000 0.00 0.00 0.00 3.85
3320 6148 0.549950 ATGCAGATGTGAAGGGGAGG 59.450 55.000 0.00 0.00 0.00 4.30
3321 6149 1.809271 CGATGCAGATGTGAAGGGGAG 60.809 57.143 0.00 0.00 0.00 4.30
3322 6150 0.178767 CGATGCAGATGTGAAGGGGA 59.821 55.000 0.00 0.00 0.00 4.81
3323 6151 0.816825 CCGATGCAGATGTGAAGGGG 60.817 60.000 0.00 0.00 0.00 4.79
3324 6152 1.442526 GCCGATGCAGATGTGAAGGG 61.443 60.000 0.00 0.00 37.47 3.95
3325 6153 1.442526 GGCCGATGCAGATGTGAAGG 61.443 60.000 0.00 0.00 40.13 3.46
3327 6155 0.107066 ATGGCCGATGCAGATGTGAA 60.107 50.000 0.00 0.00 40.13 3.18
3328 6156 0.107066 AATGGCCGATGCAGATGTGA 60.107 50.000 0.00 0.00 40.13 3.58
3329 6157 0.030235 CAATGGCCGATGCAGATGTG 59.970 55.000 0.00 0.00 40.13 3.21
3330 6158 0.107066 TCAATGGCCGATGCAGATGT 60.107 50.000 0.00 0.00 40.13 3.06
3331 6159 1.068541 CATCAATGGCCGATGCAGATG 60.069 52.381 6.22 6.20 40.13 2.90
3332 6160 1.244816 CATCAATGGCCGATGCAGAT 58.755 50.000 6.22 0.00 40.13 2.90
3333 6161 2.710440 CATCAATGGCCGATGCAGA 58.290 52.632 6.22 0.00 40.13 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.