Multiple sequence alignment - TraesCS3A01G055300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G055300 chr3A 100.000 6231 0 0 1 6231 32125835 32119605 0.000000e+00 11507.0
1 TraesCS3A01G055300 chr3A 85.488 379 46 7 1609 1985 32124040 32123669 2.720000e-103 387.0
2 TraesCS3A01G055300 chr3A 85.488 379 46 7 1796 2167 32124227 32123851 2.720000e-103 387.0
3 TraesCS3A01G055300 chr3A 81.771 192 26 7 1609 1798 32123853 32123669 1.080000e-32 152.0
4 TraesCS3A01G055300 chr3A 81.771 192 26 7 1983 2167 32124227 32124038 1.080000e-32 152.0
5 TraesCS3A01G055300 chr3A 96.296 54 2 0 3433 3486 494040267 494040320 8.600000e-14 89.8
6 TraesCS3A01G055300 chr3D 94.455 2759 119 17 3483 6222 22371218 22368475 0.000000e+00 4217.0
7 TraesCS3A01G055300 chr3D 92.199 987 43 13 1355 2323 22373318 22372348 0.000000e+00 1365.0
8 TraesCS3A01G055300 chr3D 92.944 737 20 6 2710 3437 22371930 22371217 0.000000e+00 1044.0
9 TraesCS3A01G055300 chr3D 88.983 826 61 9 543 1349 22374358 22373544 0.000000e+00 994.0
10 TraesCS3A01G055300 chr3D 91.071 336 27 3 2376 2709 22372330 22371996 9.530000e-123 451.0
11 TraesCS3A01G055300 chr3D 85.677 384 41 9 1609 1985 22372880 22372504 5.860000e-105 392.0
12 TraesCS3A01G055300 chr3D 85.379 383 43 8 1796 2167 22373067 22372687 9.800000e-103 385.0
13 TraesCS3A01G055300 chr3D 82.812 192 24 7 1983 2167 22373067 22372878 5.000000e-36 163.0
14 TraesCS3A01G055300 chr3D 82.383 193 24 8 1609 1798 22372689 22372504 6.470000e-35 159.0
15 TraesCS3A01G055300 chr3B 91.101 2798 171 31 3477 6222 39903229 39906000 0.000000e+00 3716.0
16 TraesCS3A01G055300 chr3B 89.057 2047 131 38 692 2694 39900425 39902422 0.000000e+00 2453.0
17 TraesCS3A01G055300 chr3B 94.422 735 29 7 2709 3434 39902502 39903233 0.000000e+00 1120.0
18 TraesCS3A01G055300 chr3B 87.105 380 39 8 1609 1985 39901547 39901919 7.470000e-114 422.0
19 TraesCS3A01G055300 chr3B 86.280 379 43 8 1796 2167 39901360 39901736 2.710000e-108 403.0
20 TraesCS3A01G055300 chr3B 88.079 151 16 2 543 692 39900242 39900391 1.780000e-40 178.0
21 TraesCS3A01G055300 chr3B 82.292 192 25 7 1983 2167 39901360 39901549 2.330000e-34 158.0
22 TraesCS3A01G055300 chr3B 81.865 193 25 8 1609 1798 39901734 39901919 3.010000e-33 154.0
23 TraesCS3A01G055300 chr3B 86.239 109 13 2 434 541 14220101 14220208 3.950000e-22 117.0
24 TraesCS3A01G055300 chr1A 89.961 508 34 6 1 501 289504409 289503912 1.890000e-179 640.0
25 TraesCS3A01G055300 chr1A 94.643 56 1 2 3433 3487 473033794 473033848 1.110000e-12 86.1
26 TraesCS3A01G055300 chr1A 93.220 59 3 1 487 545 567061991 567062048 1.110000e-12 86.1
27 TraesCS3A01G055300 chr1A 94.340 53 3 0 3433 3485 498140782 498140834 1.440000e-11 82.4
28 TraesCS3A01G055300 chr1A 89.552 67 4 3 495 559 582646243 582646178 1.440000e-11 82.4
29 TraesCS3A01G055300 chr1A 94.231 52 3 0 3443 3494 36568567 36568618 5.180000e-11 80.5
30 TraesCS3A01G055300 chr1A 96.000 50 1 1 3439 3487 471324160 471324111 5.180000e-11 80.5
31 TraesCS3A01G055300 chr5A 93.990 416 23 2 1 414 640090242 640089827 4.100000e-176 628.0
32 TraesCS3A01G055300 chr5A 87.069 116 11 1 434 545 103362347 103362232 1.820000e-25 128.0
33 TraesCS3A01G055300 chr7A 93.039 431 23 5 1 424 117042353 117041923 1.910000e-174 623.0
34 TraesCS3A01G055300 chr7A 92.117 444 25 9 3 437 731379709 731380151 8.870000e-173 617.0
35 TraesCS3A01G055300 chr7A 90.773 466 32 8 3 458 238122724 238122260 4.130000e-171 612.0
36 TraesCS3A01G055300 chr7A 84.952 525 52 16 3 501 87875345 87875868 2.000000e-139 507.0
37 TraesCS3A01G055300 chr7A 84.895 523 56 11 1 501 610996113 610996634 2.000000e-139 507.0
38 TraesCS3A01G055300 chr7A 84.630 527 48 19 3 501 676203332 676203853 1.560000e-135 494.0
39 TraesCS3A01G055300 chr7A 91.667 108 9 0 434 541 664845162 664845269 3.890000e-32 150.0
40 TraesCS3A01G055300 chr7A 92.308 91 7 0 411 501 729267365 729267455 5.070000e-26 130.0
41 TraesCS3A01G055300 chr2A 92.890 436 20 8 1 425 769672077 769672512 1.910000e-174 623.0
42 TraesCS3A01G055300 chr2A 94.737 57 3 0 487 543 633186713 633186657 8.600000e-14 89.8
43 TraesCS3A01G055300 chr2A 93.333 60 1 3 3436 3494 67537648 67537591 1.110000e-12 86.1
44 TraesCS3A01G055300 chr6A 92.824 432 23 7 1 425 56744306 56744736 2.470000e-173 619.0
45 TraesCS3A01G055300 chr6A 87.843 510 48 9 1 499 602704148 602704654 2.500000e-163 586.0
46 TraesCS3A01G055300 chr6A 93.220 59 4 0 487 545 9589825 9589883 3.090000e-13 87.9
47 TraesCS3A01G055300 chr6A 92.857 56 2 2 3436 3491 472520748 472520695 5.180000e-11 80.5
48 TraesCS3A01G055300 chr5B 88.627 510 46 9 1 499 377985276 377984768 1.490000e-170 610.0
49 TraesCS3A01G055300 chr4D 98.113 53 0 1 3436 3487 453044690 453044638 2.390000e-14 91.6
50 TraesCS3A01G055300 chr4D 94.118 51 3 0 3439 3489 377828386 377828336 1.860000e-10 78.7
51 TraesCS3A01G055300 chr4D 89.796 49 2 2 3456 3501 389229179 389229131 6.750000e-05 60.2
52 TraesCS3A01G055300 chr4D 100.000 31 0 0 3456 3486 108628599 108628569 2.430000e-04 58.4
53 TraesCS3A01G055300 chr4D 100.000 31 0 0 3456 3486 280179784 280179814 2.430000e-04 58.4
54 TraesCS3A01G055300 chr4D 97.059 34 0 1 3456 3489 19549551 19549519 8.730000e-04 56.5
55 TraesCS3A01G055300 chr4D 94.595 37 1 1 3456 3492 58134052 58134017 8.730000e-04 56.5
56 TraesCS3A01G055300 chr4D 94.286 35 2 0 3458 3492 317601897 317601863 3.000000e-03 54.7
57 TraesCS3A01G055300 chr7D 92.063 63 4 1 483 545 21875643 21875582 3.090000e-13 87.9
58 TraesCS3A01G055300 chr7D 96.154 52 2 0 3433 3484 446245039 446245090 1.110000e-12 86.1
59 TraesCS3A01G055300 chr4A 93.220 59 4 0 487 545 28875219 28875161 3.090000e-13 87.9
60 TraesCS3A01G055300 chr7B 97.959 49 1 0 3436 3484 462734042 462733994 1.110000e-12 86.1
61 TraesCS3A01G055300 chr7B 97.872 47 1 0 3439 3485 512694489 512694443 1.440000e-11 82.4
62 TraesCS3A01G055300 chr2D 92.857 56 3 1 3437 3492 15596780 15596834 5.180000e-11 80.5
63 TraesCS3A01G055300 chr2D 92.857 56 3 1 3430 3484 67220871 67220926 5.180000e-11 80.5
64 TraesCS3A01G055300 chr2B 92.857 56 3 1 3437 3492 27717200 27717254 5.180000e-11 80.5
65 TraesCS3A01G055300 chr4B 94.118 51 3 0 3439 3489 463582571 463582521 1.860000e-10 78.7
66 TraesCS3A01G055300 chr1D 95.918 49 1 1 3436 3484 194471424 194471471 1.860000e-10 78.7
67 TraesCS3A01G055300 chr1D 92.308 52 4 0 3433 3484 41505326 41505377 2.410000e-09 75.0
68 TraesCS3A01G055300 chr1D 90.244 41 4 0 3454 3494 37220057 37220097 3.000000e-03 54.7
69 TraesCS3A01G055300 chr6D 95.833 48 0 2 3444 3491 332956033 332955988 6.700000e-10 76.8
70 TraesCS3A01G055300 chr6D 97.222 36 1 0 3451 3486 324522772 324522737 1.880000e-05 62.1
71 TraesCS3A01G055300 chr6D 90.909 44 2 2 3454 3495 4370793 4370836 2.430000e-04 58.4
72 TraesCS3A01G055300 chr5D 86.567 67 6 3 3433 3499 334901741 334901804 3.120000e-08 71.3
73 TraesCS3A01G055300 chr5D 89.796 49 3 2 3444 3491 565500363 565500410 1.880000e-05 62.1
74 TraesCS3A01G055300 chrUn 87.755 49 4 2 3444 3492 89026224 89026270 8.730000e-04 56.5
75 TraesCS3A01G055300 chrUn 100.000 29 0 0 3456 3484 19227896 19227924 3.000000e-03 54.7
76 TraesCS3A01G055300 chrUn 100.000 29 0 0 3456 3484 321894246 321894218 3.000000e-03 54.7
77 TraesCS3A01G055300 chrUn 96.774 31 1 0 3457 3487 50620885 50620855 1.100000e-02 52.8
78 TraesCS3A01G055300 chrUn 100.000 28 0 0 3458 3485 62662095 62662068 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G055300 chr3A 32119605 32125835 6230 True 2517.000000 11507 86.903600 1 6231 5 chr3A.!!$R1 6230
1 TraesCS3A01G055300 chr3D 22368475 22374358 5883 True 1018.888889 4217 88.433667 543 6222 9 chr3D.!!$R1 5679
2 TraesCS3A01G055300 chr3B 39900242 39906000 5758 False 1075.500000 3716 87.525125 543 6222 8 chr3B.!!$F2 5679
3 TraesCS3A01G055300 chr7A 87875345 87875868 523 False 507.000000 507 84.952000 3 501 1 chr7A.!!$F1 498
4 TraesCS3A01G055300 chr7A 610996113 610996634 521 False 507.000000 507 84.895000 1 501 1 chr7A.!!$F2 500
5 TraesCS3A01G055300 chr7A 676203332 676203853 521 False 494.000000 494 84.630000 3 501 1 chr7A.!!$F4 498
6 TraesCS3A01G055300 chr6A 602704148 602704654 506 False 586.000000 586 87.843000 1 499 1 chr6A.!!$F3 498
7 TraesCS3A01G055300 chr5B 377984768 377985276 508 True 610.000000 610 88.627000 1 499 1 chr5B.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 299 0.315886 TCCGAAGTTAAGCGTGCTCA 59.684 50.000 0.00 0.00 0.00 4.26 F
303 343 0.323629 TGACCGGCCAAGAAGTTAGG 59.676 55.000 0.00 0.00 0.00 2.69 F
1012 1136 0.392193 CACGGCCATGAGCTCTTCTT 60.392 55.000 16.19 0.00 43.05 2.52 F
1953 2327 0.666913 GCATTGAGAGCGCCATCATT 59.333 50.000 12.40 6.95 0.00 2.57 F
2581 2961 0.179092 TGAGCGTCTCAGATGCCATG 60.179 55.000 15.67 0.00 44.75 3.66 F
3919 4377 0.175760 GGACACATCCTCGCTGCTAA 59.824 55.000 0.00 0.00 42.45 3.09 F
3974 4432 1.555533 GTTCCTAGCTGGCAGGTAAGT 59.444 52.381 24.90 0.00 34.56 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1333 0.169009 GAAACGGCATGGAGCTTCAC 59.831 55.000 0.00 0.00 44.79 3.18 R
1815 2189 0.376152 CGCTTACTGGCTCTGCATTG 59.624 55.000 0.00 0.00 0.00 2.82 R
2557 2937 0.248417 CATCTGAGACGCTCACCTCG 60.248 60.000 5.59 0.00 35.39 4.63 R
3919 4377 1.504275 AAGCTTGACCCCAGCATCCT 61.504 55.000 0.00 0.00 0.00 3.24 R
3974 4432 3.230134 AGGTGAAATTGTAGGCTTGCAA 58.770 40.909 1.10 1.10 33.36 4.08 R
4778 5284 0.543277 CTCCTGCAGGGATGCTGTTA 59.457 55.000 32.23 8.89 44.15 2.41 R
5946 6459 0.033228 GCAGCGATAGAGCAGGACAT 59.967 55.000 0.00 0.00 40.15 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 55 6.968263 TGGTCAAATTTGGTCAAACTATGA 57.032 33.333 17.90 1.92 35.05 2.15
45 57 8.642935 TGGTCAAATTTGGTCAAACTATGATA 57.357 30.769 17.90 0.00 40.97 2.15
143 181 2.356382 TCAAACGGTGAAATGTGTGACC 59.644 45.455 0.00 0.00 31.51 4.02
145 183 3.478857 AACGGTGAAATGTGTGACCTA 57.521 42.857 0.00 0.00 0.00 3.08
162 200 4.937620 TGACCTAATGCTCAAGCTAAACTG 59.062 41.667 3.32 0.00 42.66 3.16
168 206 2.037641 TGCTCAAGCTAAACTGCTGAGA 59.962 45.455 12.44 6.15 43.24 3.27
185 223 6.577103 TGCTGAGAGTTAATAGGATTGACAG 58.423 40.000 0.00 0.00 0.00 3.51
191 229 8.079211 AGAGTTAATAGGATTGACAGCTTACA 57.921 34.615 0.00 0.00 0.00 2.41
192 230 8.709308 AGAGTTAATAGGATTGACAGCTTACAT 58.291 33.333 0.00 0.00 0.00 2.29
231 270 2.026822 AGTGCAGACTTGGAATGTAGGG 60.027 50.000 0.00 0.00 0.00 3.53
241 280 5.731678 ACTTGGAATGTAGGGGAATAGAACT 59.268 40.000 0.00 0.00 0.00 3.01
243 282 4.658901 TGGAATGTAGGGGAATAGAACTCC 59.341 45.833 0.00 0.00 0.00 3.85
244 283 4.262506 GGAATGTAGGGGAATAGAACTCCG 60.263 50.000 0.00 0.00 33.36 4.63
260 299 0.315886 TCCGAAGTTAAGCGTGCTCA 59.684 50.000 0.00 0.00 0.00 4.26
303 343 0.323629 TGACCGGCCAAGAAGTTAGG 59.676 55.000 0.00 0.00 0.00 2.69
338 378 2.225019 GTGATCCACACTTGAGCAGTTG 59.775 50.000 0.00 0.00 45.13 3.16
340 380 2.708216 TCCACACTTGAGCAGTTGAA 57.292 45.000 0.00 0.00 30.92 2.69
354 394 5.869579 AGCAGTTGAAAGAGGTGATTAGAA 58.130 37.500 0.00 0.00 0.00 2.10
501 574 3.313249 TCGTGCCGAATCGATACTAAAGA 59.687 43.478 3.36 0.00 31.06 2.52
502 575 3.421231 CGTGCCGAATCGATACTAAAGAC 59.579 47.826 3.36 0.00 0.00 3.01
503 576 3.734735 GTGCCGAATCGATACTAAAGACC 59.265 47.826 3.36 0.00 0.00 3.85
504 577 3.243636 TGCCGAATCGATACTAAAGACCC 60.244 47.826 3.36 0.00 0.00 4.46
505 578 3.005578 GCCGAATCGATACTAAAGACCCT 59.994 47.826 3.36 0.00 0.00 4.34
506 579 4.501058 GCCGAATCGATACTAAAGACCCTT 60.501 45.833 3.36 0.00 0.00 3.95
507 580 5.278660 GCCGAATCGATACTAAAGACCCTTA 60.279 44.000 3.36 0.00 0.00 2.69
508 581 6.148264 CCGAATCGATACTAAAGACCCTTAC 58.852 44.000 3.36 0.00 0.00 2.34
509 582 5.850128 CGAATCGATACTAAAGACCCTTACG 59.150 44.000 0.00 0.00 0.00 3.18
510 583 6.293081 CGAATCGATACTAAAGACCCTTACGA 60.293 42.308 0.00 0.00 0.00 3.43
511 584 6.949352 ATCGATACTAAAGACCCTTACGAA 57.051 37.500 0.00 0.00 0.00 3.85
512 585 6.124088 TCGATACTAAAGACCCTTACGAAC 57.876 41.667 0.00 0.00 0.00 3.95
513 586 5.066505 TCGATACTAAAGACCCTTACGAACC 59.933 44.000 0.00 0.00 0.00 3.62
514 587 3.582714 ACTAAAGACCCTTACGAACCG 57.417 47.619 0.00 0.00 0.00 4.44
515 588 2.232208 ACTAAAGACCCTTACGAACCGG 59.768 50.000 0.00 0.00 0.00 5.28
516 589 1.051008 AAAGACCCTTACGAACCGGT 58.949 50.000 0.00 0.00 0.00 5.28
517 590 1.051008 AAGACCCTTACGAACCGGTT 58.949 50.000 22.50 22.50 0.00 4.44
518 591 1.051008 AGACCCTTACGAACCGGTTT 58.949 50.000 23.22 9.26 0.00 3.27
519 592 1.417517 AGACCCTTACGAACCGGTTTT 59.582 47.619 23.22 14.26 0.00 2.43
520 593 2.632512 AGACCCTTACGAACCGGTTTTA 59.367 45.455 23.22 13.17 0.00 1.52
521 594 3.070878 AGACCCTTACGAACCGGTTTTAA 59.929 43.478 23.22 19.35 0.00 1.52
522 595 3.812609 GACCCTTACGAACCGGTTTTAAA 59.187 43.478 23.22 14.20 0.00 1.52
523 596 3.814842 ACCCTTACGAACCGGTTTTAAAG 59.185 43.478 23.22 21.71 0.00 1.85
524 597 3.365264 CCCTTACGAACCGGTTTTAAAGC 60.365 47.826 23.22 6.32 0.00 3.51
525 598 3.499537 CCTTACGAACCGGTTTTAAAGCT 59.500 43.478 23.22 0.00 0.00 3.74
526 599 4.377738 CCTTACGAACCGGTTTTAAAGCTC 60.378 45.833 23.22 4.78 0.00 4.09
527 600 1.875514 ACGAACCGGTTTTAAAGCTCC 59.124 47.619 23.22 3.91 0.00 4.70
528 601 1.136169 CGAACCGGTTTTAAAGCTCCG 60.136 52.381 23.22 12.96 42.22 4.63
529 602 1.875514 GAACCGGTTTTAAAGCTCCGT 59.124 47.619 23.22 0.00 41.17 4.69
530 603 1.971481 ACCGGTTTTAAAGCTCCGTT 58.029 45.000 0.00 9.12 41.17 4.44
531 604 2.300433 ACCGGTTTTAAAGCTCCGTTT 58.700 42.857 0.00 9.30 41.17 3.60
532 605 2.689471 ACCGGTTTTAAAGCTCCGTTTT 59.311 40.909 0.00 7.64 41.17 2.43
533 606 3.243168 ACCGGTTTTAAAGCTCCGTTTTC 60.243 43.478 0.00 0.00 41.17 2.29
534 607 3.004002 CCGGTTTTAAAGCTCCGTTTTCT 59.996 43.478 19.38 0.00 41.17 2.52
535 608 4.213906 CCGGTTTTAAAGCTCCGTTTTCTA 59.786 41.667 19.38 0.00 41.17 2.10
536 609 5.142265 CGGTTTTAAAGCTCCGTTTTCTAC 58.858 41.667 15.48 0.00 38.45 2.59
537 610 5.049886 CGGTTTTAAAGCTCCGTTTTCTACT 60.050 40.000 15.48 0.00 38.45 2.57
538 611 6.146021 CGGTTTTAAAGCTCCGTTTTCTACTA 59.854 38.462 15.48 0.00 38.45 1.82
539 612 7.516481 GGTTTTAAAGCTCCGTTTTCTACTAG 58.484 38.462 1.91 0.00 0.00 2.57
540 613 7.172190 GGTTTTAAAGCTCCGTTTTCTACTAGT 59.828 37.037 0.00 0.00 0.00 2.57
541 614 9.196552 GTTTTAAAGCTCCGTTTTCTACTAGTA 57.803 33.333 1.89 1.89 0.00 1.82
550 623 5.572126 CCGTTTTCTACTAGTAGTTGCTCAC 59.428 44.000 25.58 14.89 34.84 3.51
562 635 6.958767 AGTAGTTGCTCACCCTAACATATTT 58.041 36.000 0.00 0.00 0.00 1.40
564 637 8.204836 AGTAGTTGCTCACCCTAACATATTTAG 58.795 37.037 0.00 0.00 0.00 1.85
620 693 1.365368 GCTTCTTCCGCCTTCTCAGC 61.365 60.000 0.00 0.00 0.00 4.26
644 717 1.550524 CCCTTGTGGATGAGAACGAGA 59.449 52.381 0.00 0.00 35.39 4.04
660 733 4.789012 ACGAGAGGTACGTTATTTTCCA 57.211 40.909 0.00 0.00 41.18 3.53
684 757 2.851263 AATTGTTGGCGGTCTGTCTA 57.149 45.000 0.00 0.00 0.00 2.59
695 768 3.430374 GCGGTCTGTCTAATTCTAGGCAA 60.430 47.826 0.00 0.00 39.26 4.52
738 845 8.437443 TTTTTAAAACCAATCGTGCGTATTAG 57.563 30.769 0.00 0.00 0.00 1.73
749 856 7.798486 ATCGTGCGTATTAGTATTTGATCTC 57.202 36.000 0.00 0.00 0.00 2.75
796 903 8.561738 TGTTATGGAAAACTGAACTTAGATCC 57.438 34.615 0.00 0.00 0.00 3.36
802 911 8.413229 TGGAAAACTGAACTTAGATCCTTTTTG 58.587 33.333 3.95 0.00 0.00 2.44
827 936 0.750249 ATCATCGGGTGATACGTGCA 59.250 50.000 0.92 0.00 45.67 4.57
828 937 0.533032 TCATCGGGTGATACGTGCAA 59.467 50.000 0.00 0.00 32.18 4.08
829 938 1.138069 TCATCGGGTGATACGTGCAAT 59.862 47.619 0.00 0.00 32.18 3.56
830 939 1.261354 CATCGGGTGATACGTGCAATG 59.739 52.381 0.00 0.00 32.18 2.82
831 940 1.087202 TCGGGTGATACGTGCAATGC 61.087 55.000 0.00 0.00 0.00 3.56
832 941 1.365368 CGGGTGATACGTGCAATGCA 61.365 55.000 2.72 2.72 35.60 3.96
861 976 6.529125 GCATGTACAAAATCACTGGAAGATTG 59.471 38.462 0.00 0.00 35.96 2.67
882 997 2.462456 AGCTTTGAGATTCGTGCTGA 57.538 45.000 0.00 0.00 0.00 4.26
883 998 2.983229 AGCTTTGAGATTCGTGCTGAT 58.017 42.857 0.00 0.00 0.00 2.90
1012 1136 0.392193 CACGGCCATGAGCTCTTCTT 60.392 55.000 16.19 0.00 43.05 2.52
1018 1142 2.483538 GCCATGAGCTCTTCTTCTCCTC 60.484 54.545 16.19 0.00 38.99 3.71
1138 1262 4.127040 CGCTCACGCTCAGCTCCT 62.127 66.667 0.00 0.00 34.45 3.69
1140 1264 2.101965 CTCACGCTCAGCTCCTCG 59.898 66.667 0.00 0.00 0.00 4.63
1197 1321 0.941542 CGGCGTTTCTTGGTTTCTGA 59.058 50.000 0.00 0.00 0.00 3.27
1198 1322 1.333791 CGGCGTTTCTTGGTTTCTGAC 60.334 52.381 0.00 0.00 0.00 3.51
1199 1323 1.947456 GGCGTTTCTTGGTTTCTGACT 59.053 47.619 0.00 0.00 0.00 3.41
1200 1324 2.287009 GGCGTTTCTTGGTTTCTGACTG 60.287 50.000 0.00 0.00 0.00 3.51
1209 1333 1.605712 GGTTTCTGACTGTCAGGGACG 60.606 57.143 31.26 11.99 44.39 4.79
1229 1355 0.960364 TGAAGCTCCATGCCGTTTCC 60.960 55.000 0.00 0.00 44.23 3.13
1231 1357 0.962356 AAGCTCCATGCCGTTTCCTG 60.962 55.000 0.00 0.00 44.23 3.86
1236 1362 1.185315 CCATGCCGTTTCCTGGATTT 58.815 50.000 0.00 0.00 0.00 2.17
1249 1375 3.136763 CCTGGATTTCTCATCACATCCG 58.863 50.000 0.00 0.00 38.49 4.18
1274 1407 1.873591 ACGATTTCATGGCGCTAATCC 59.126 47.619 7.64 0.00 0.00 3.01
1424 1792 5.990386 CAGCTGCAGAGACAGATAATGTAAT 59.010 40.000 20.43 0.00 44.17 1.89
1426 1794 5.118357 GCTGCAGAGACAGATAATGTAATCG 59.882 44.000 20.43 0.00 44.17 3.34
1439 1807 8.827677 AGATAATGTAATCGTCCTTGCTTTTAC 58.172 33.333 0.00 0.00 0.00 2.01
1457 1825 6.359883 GCTTTTACGGTTTCTCAAATTCAGTC 59.640 38.462 0.00 0.00 0.00 3.51
1458 1826 7.562454 TTTTACGGTTTCTCAAATTCAGTCT 57.438 32.000 0.00 0.00 0.00 3.24
1459 1827 6.780706 TTACGGTTTCTCAAATTCAGTCTC 57.219 37.500 0.00 0.00 0.00 3.36
1460 1828 4.703897 ACGGTTTCTCAAATTCAGTCTCA 58.296 39.130 0.00 0.00 0.00 3.27
1461 1829 5.123227 ACGGTTTCTCAAATTCAGTCTCAA 58.877 37.500 0.00 0.00 0.00 3.02
1462 1830 5.007724 ACGGTTTCTCAAATTCAGTCTCAAC 59.992 40.000 0.00 0.00 0.00 3.18
1463 1831 5.237344 CGGTTTCTCAAATTCAGTCTCAACT 59.763 40.000 0.00 0.00 35.60 3.16
1494 1868 3.935203 CACTGTGCCTTACTTACCAGATG 59.065 47.826 0.00 0.00 0.00 2.90
1521 1895 3.645884 GCATCTTGCAGTGTGTGAATTT 58.354 40.909 0.00 0.00 44.26 1.82
1815 2189 2.092914 ACAGACGAAAGATGAATCCCCC 60.093 50.000 0.00 0.00 0.00 5.40
1827 2201 1.877672 AATCCCCCAATGCAGAGCCA 61.878 55.000 0.00 0.00 0.00 4.75
1844 2218 2.027073 CAGTAAGCGCCGCTGTCAA 61.027 57.895 14.52 0.00 39.62 3.18
1934 2308 9.535878 GTAGTGATCTAGTTTATTCCAGAAAGG 57.464 37.037 0.00 0.00 39.47 3.11
1953 2327 0.666913 GCATTGAGAGCGCCATCATT 59.333 50.000 12.40 6.95 0.00 2.57
2040 2418 0.798771 GCTAGCGACACGGTTCAGAG 60.799 60.000 0.00 0.00 38.83 3.35
2108 2486 7.603404 AGGTACGCTTGTAGTGATCTAGTATAG 59.397 40.741 0.00 0.00 41.04 1.31
2109 2487 6.804770 ACGCTTGTAGTGATCTAGTATAGG 57.195 41.667 0.00 0.00 39.78 2.57
2110 2488 5.181622 ACGCTTGTAGTGATCTAGTATAGGC 59.818 44.000 0.00 0.00 39.78 3.93
2111 2489 5.392165 CGCTTGTAGTGATCTAGTATAGGCC 60.392 48.000 0.00 0.00 39.78 5.19
2112 2490 5.477291 GCTTGTAGTGATCTAGTATAGGCCA 59.523 44.000 5.01 0.00 39.78 5.36
2113 2491 6.153680 GCTTGTAGTGATCTAGTATAGGCCAT 59.846 42.308 5.01 0.00 39.78 4.40
2145 2524 7.628235 CATTGAGAATGTAGTCATGACATGTC 58.372 38.462 27.02 19.27 37.59 3.06
2176 2555 0.670162 TCAAAAACAGGAGCAGCTGC 59.330 50.000 31.53 31.53 42.49 5.25
2270 2649 5.005971 CAGTTTTCTTGGTTTGCATGTTCAG 59.994 40.000 0.00 0.00 0.00 3.02
2277 2656 3.698539 TGGTTTGCATGTTCAGAAGTTGA 59.301 39.130 0.00 0.00 0.00 3.18
2281 2660 3.807553 TGCATGTTCAGAAGTTGAGTGA 58.192 40.909 0.00 0.00 37.07 3.41
2283 2662 4.639755 TGCATGTTCAGAAGTTGAGTGAAA 59.360 37.500 0.00 0.00 37.07 2.69
2284 2663 4.972440 GCATGTTCAGAAGTTGAGTGAAAC 59.028 41.667 0.00 0.00 37.07 2.78
2316 2695 4.637534 TCAAAGAGATATGCTGCTTGTTCC 59.362 41.667 0.00 0.00 0.00 3.62
2317 2696 3.920231 AGAGATATGCTGCTTGTTCCA 57.080 42.857 0.00 0.00 0.00 3.53
2323 2702 6.066690 AGATATGCTGCTTGTTCCACATAAT 58.933 36.000 0.00 0.00 0.00 1.28
2324 2703 4.644103 ATGCTGCTTGTTCCACATAATC 57.356 40.909 0.00 0.00 0.00 1.75
2325 2704 3.689347 TGCTGCTTGTTCCACATAATCT 58.311 40.909 0.00 0.00 0.00 2.40
2326 2705 3.691118 TGCTGCTTGTTCCACATAATCTC 59.309 43.478 0.00 0.00 0.00 2.75
2327 2706 3.944015 GCTGCTTGTTCCACATAATCTCT 59.056 43.478 0.00 0.00 0.00 3.10
2328 2707 5.118990 GCTGCTTGTTCCACATAATCTCTA 58.881 41.667 0.00 0.00 0.00 2.43
2329 2708 5.762218 GCTGCTTGTTCCACATAATCTCTAT 59.238 40.000 0.00 0.00 0.00 1.98
2330 2709 6.293298 GCTGCTTGTTCCACATAATCTCTATG 60.293 42.308 0.00 0.00 0.00 2.23
2331 2710 6.057533 TGCTTGTTCCACATAATCTCTATGG 58.942 40.000 0.00 0.00 0.00 2.74
2332 2711 6.058183 GCTTGTTCCACATAATCTCTATGGT 58.942 40.000 0.00 0.00 0.00 3.55
2333 2712 7.147567 TGCTTGTTCCACATAATCTCTATGGTA 60.148 37.037 0.00 0.00 0.00 3.25
2334 2713 7.386299 GCTTGTTCCACATAATCTCTATGGTAG 59.614 40.741 0.00 0.00 0.00 3.18
2335 2714 7.303182 TGTTCCACATAATCTCTATGGTAGG 57.697 40.000 0.00 0.00 0.00 3.18
2336 2715 6.270000 TGTTCCACATAATCTCTATGGTAGGG 59.730 42.308 0.00 0.00 0.00 3.53
2337 2716 5.977533 TCCACATAATCTCTATGGTAGGGT 58.022 41.667 0.00 0.00 0.00 4.34
2338 2717 5.780282 TCCACATAATCTCTATGGTAGGGTG 59.220 44.000 0.00 0.00 0.00 4.61
2339 2718 5.046304 CCACATAATCTCTATGGTAGGGTGG 60.046 48.000 0.00 0.00 35.49 4.61
2340 2719 5.544176 CACATAATCTCTATGGTAGGGTGGT 59.456 44.000 0.00 0.00 0.00 4.16
2341 2720 6.043243 CACATAATCTCTATGGTAGGGTGGTT 59.957 42.308 0.00 0.00 0.00 3.67
2342 2721 7.234782 CACATAATCTCTATGGTAGGGTGGTTA 59.765 40.741 0.00 0.00 0.00 2.85
2343 2722 7.962003 ACATAATCTCTATGGTAGGGTGGTTAT 59.038 37.037 0.00 0.00 0.00 1.89
2344 2723 8.826765 CATAATCTCTATGGTAGGGTGGTTATT 58.173 37.037 0.00 0.00 0.00 1.40
2409 2788 3.009033 TGAAATCTGAAACCCGATGAGGT 59.991 43.478 0.00 0.00 44.00 3.85
2410 2789 4.224147 TGAAATCTGAAACCCGATGAGGTA 59.776 41.667 0.00 0.00 40.05 3.08
2411 2790 4.408182 AATCTGAAACCCGATGAGGTAG 57.592 45.455 0.00 0.00 40.05 3.18
2432 2812 3.075148 GTGAGCCTTCTTGTTTACCTCC 58.925 50.000 0.00 0.00 0.00 4.30
2433 2813 2.979678 TGAGCCTTCTTGTTTACCTCCT 59.020 45.455 0.00 0.00 0.00 3.69
2458 2838 5.648178 AACTCAATGATATGCAGCAACAA 57.352 34.783 0.00 0.00 0.00 2.83
2500 2880 2.505819 CCCCAAGGCTACAGTAGACATT 59.494 50.000 16.28 6.21 35.81 2.71
2557 2937 1.448013 GACCAGCCACGAGCCTTAC 60.448 63.158 0.00 0.00 45.47 2.34
2567 2947 1.226717 GAGCCTTACGAGGTGAGCG 60.227 63.158 0.00 0.00 45.44 5.03
2581 2961 0.179092 TGAGCGTCTCAGATGCCATG 60.179 55.000 15.67 0.00 44.75 3.66
2612 2992 8.791327 TCTTCATGTTCATACAGCAGATTTTA 57.209 30.769 0.00 0.00 37.77 1.52
2694 3074 6.554334 TTGTGTTTCTAAAGTAGCATCCAC 57.446 37.500 0.00 0.00 0.00 4.02
3131 3585 9.745880 TGTAATAATTCTTTCCTCATAGTCGAC 57.254 33.333 7.70 7.70 0.00 4.20
3136 3590 3.943381 TCTTTCCTCATAGTCGACGCTAA 59.057 43.478 10.46 0.00 0.00 3.09
3154 3608 7.027778 ACGCTAAAGGAATTGGTCAAATATC 57.972 36.000 0.00 0.00 0.00 1.63
3194 3648 7.412891 GCACCCAAAATTTTGCATTACTATGTC 60.413 37.037 22.90 6.54 36.86 3.06
3197 3651 7.201548 CCCAAAATTTTGCATTACTATGTCTGC 60.202 37.037 22.90 0.00 36.86 4.26
3203 3657 5.966636 TGCATTACTATGTCTGCGTTTAG 57.033 39.130 0.00 0.00 37.44 1.85
3207 3661 7.094975 TGCATTACTATGTCTGCGTTTAGTTTT 60.095 33.333 0.00 0.00 37.44 2.43
3249 3703 7.882179 ACTGTCGGTAAATTAAATTTTCAGCT 58.118 30.769 0.00 0.00 33.82 4.24
3315 3769 1.865865 TCACTCTGTTGCTTCGGAAC 58.134 50.000 0.00 0.00 0.00 3.62
3453 3907 8.599055 AAGGTACTACAAAGTTGTACTAAAGC 57.401 34.615 16.94 5.10 41.71 3.51
3454 3908 7.960262 AGGTACTACAAAGTTGTACTAAAGCT 58.040 34.615 16.94 6.75 41.71 3.74
3455 3909 7.871463 AGGTACTACAAAGTTGTACTAAAGCTG 59.129 37.037 16.94 0.41 41.71 4.24
3456 3910 6.541111 ACTACAAAGTTGTACTAAAGCTGC 57.459 37.500 0.00 0.00 42.35 5.25
3457 3911 4.468095 ACAAAGTTGTACTAAAGCTGCG 57.532 40.909 0.00 0.00 40.16 5.18
3458 3912 4.124238 ACAAAGTTGTACTAAAGCTGCGA 58.876 39.130 0.00 0.00 40.16 5.10
3459 3913 4.025145 ACAAAGTTGTACTAAAGCTGCGAC 60.025 41.667 0.00 0.00 40.16 5.19
3460 3914 3.380479 AGTTGTACTAAAGCTGCGACA 57.620 42.857 0.00 0.00 0.00 4.35
3461 3915 3.724374 AGTTGTACTAAAGCTGCGACAA 58.276 40.909 0.00 0.00 0.00 3.18
3462 3916 3.741344 AGTTGTACTAAAGCTGCGACAAG 59.259 43.478 0.00 0.00 0.00 3.16
3463 3917 3.380479 TGTACTAAAGCTGCGACAAGT 57.620 42.857 0.00 0.00 0.00 3.16
3464 3918 4.508461 TGTACTAAAGCTGCGACAAGTA 57.492 40.909 0.00 0.00 0.00 2.24
3465 3919 4.873817 TGTACTAAAGCTGCGACAAGTAA 58.126 39.130 8.16 0.33 0.00 2.24
3466 3920 5.475719 TGTACTAAAGCTGCGACAAGTAAT 58.524 37.500 8.16 0.00 0.00 1.89
3467 3921 6.623486 TGTACTAAAGCTGCGACAAGTAATA 58.377 36.000 8.16 1.29 0.00 0.98
3468 3922 7.262772 TGTACTAAAGCTGCGACAAGTAATAT 58.737 34.615 8.16 0.00 0.00 1.28
3469 3923 6.589830 ACTAAAGCTGCGACAAGTAATATG 57.410 37.500 0.00 0.00 0.00 1.78
3470 3924 4.882671 AAAGCTGCGACAAGTAATATGG 57.117 40.909 0.00 0.00 0.00 2.74
3471 3925 3.819564 AGCTGCGACAAGTAATATGGA 57.180 42.857 0.00 0.00 0.00 3.41
3472 3926 4.342862 AGCTGCGACAAGTAATATGGAT 57.657 40.909 0.00 0.00 0.00 3.41
3473 3927 4.310769 AGCTGCGACAAGTAATATGGATC 58.689 43.478 0.00 0.00 0.00 3.36
3474 3928 3.121944 GCTGCGACAAGTAATATGGATCG 59.878 47.826 0.00 0.00 0.00 3.69
3475 3929 3.649073 TGCGACAAGTAATATGGATCGG 58.351 45.455 0.00 0.00 0.00 4.18
3476 3930 3.319689 TGCGACAAGTAATATGGATCGGA 59.680 43.478 0.00 0.00 0.00 4.55
3477 3931 3.921021 GCGACAAGTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
3478 3932 4.486090 CGACAAGTAATATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
3479 3933 4.618460 CGACAAGTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
3480 3934 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
3481 3935 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
3487 3941 5.941555 ATATGGATCGGAGGGAGTAATTC 57.058 43.478 0.00 0.00 0.00 2.17
3530 3984 2.349590 TGTCATCTTCGAATGGCAGTG 58.650 47.619 2.00 0.00 36.38 3.66
3582 4036 1.004745 GAAGTCTCATCTGGGGCCAAA 59.995 52.381 4.39 0.00 0.00 3.28
3632 4088 4.516698 TGATGCAAAACTTCTGTCTTCCTC 59.483 41.667 0.00 0.00 0.00 3.71
3633 4089 3.884895 TGCAAAACTTCTGTCTTCCTCA 58.115 40.909 0.00 0.00 0.00 3.86
3634 4090 4.464008 TGCAAAACTTCTGTCTTCCTCAT 58.536 39.130 0.00 0.00 0.00 2.90
3636 4092 5.470098 TGCAAAACTTCTGTCTTCCTCATAC 59.530 40.000 0.00 0.00 0.00 2.39
3637 4093 5.703130 GCAAAACTTCTGTCTTCCTCATACT 59.297 40.000 0.00 0.00 0.00 2.12
3638 4094 6.205658 GCAAAACTTCTGTCTTCCTCATACTT 59.794 38.462 0.00 0.00 0.00 2.24
3648 4106 6.070251 TGTCTTCCTCATACTTTAGCATTCCA 60.070 38.462 0.00 0.00 0.00 3.53
3650 4108 7.011857 GTCTTCCTCATACTTTAGCATTCCAAG 59.988 40.741 0.00 0.00 0.00 3.61
3656 4114 2.226437 ACTTTAGCATTCCAAGTGCACG 59.774 45.455 12.01 0.00 44.87 5.34
3658 4116 1.155889 TAGCATTCCAAGTGCACGTG 58.844 50.000 23.76 23.76 44.87 4.49
3671 4129 3.061965 AGTGCACGTGAAATTTGTTTTGC 59.938 39.130 22.23 0.00 0.00 3.68
3679 4137 6.536941 ACGTGAAATTTGTTTTGCCAATTACT 59.463 30.769 0.00 0.00 0.00 2.24
3741 4199 6.426937 TGATTCCTTTACTTCGGAAAACAGAG 59.573 38.462 0.00 0.00 42.16 3.35
3776 4234 8.206126 TCCTCATATCATAAGCCAGACAATAA 57.794 34.615 0.00 0.00 0.00 1.40
3780 4238 9.605275 TCATATCATAAGCCAGACAATAATAGC 57.395 33.333 0.00 0.00 0.00 2.97
3783 4241 6.233434 TCATAAGCCAGACAATAATAGCCTG 58.767 40.000 0.00 0.00 0.00 4.85
3784 4242 2.856222 AGCCAGACAATAATAGCCTGC 58.144 47.619 0.00 0.00 0.00 4.85
3785 4243 2.441001 AGCCAGACAATAATAGCCTGCT 59.559 45.455 0.00 0.00 0.00 4.24
3786 4244 3.648067 AGCCAGACAATAATAGCCTGCTA 59.352 43.478 0.64 0.64 0.00 3.49
3787 4245 3.748568 GCCAGACAATAATAGCCTGCTAC 59.251 47.826 0.04 0.00 0.00 3.58
3788 4246 4.503991 GCCAGACAATAATAGCCTGCTACT 60.504 45.833 0.04 0.00 0.00 2.57
3789 4247 5.615289 CCAGACAATAATAGCCTGCTACTT 58.385 41.667 0.04 0.96 0.00 2.24
3790 4248 5.698545 CCAGACAATAATAGCCTGCTACTTC 59.301 44.000 0.04 0.00 0.00 3.01
3795 4253 8.251383 ACAATAATAGCCTGCTACTTCTTCTA 57.749 34.615 0.04 0.00 0.00 2.10
3800 4258 3.129638 AGCCTGCTACTTCTTCTAACGAG 59.870 47.826 0.00 0.00 0.00 4.18
3857 4315 4.786425 AGCTATTGAAAGATGGACTTCCC 58.214 43.478 0.00 0.00 37.93 3.97
3864 4322 3.699134 GATGGACTTCCCGGTGCCC 62.699 68.421 0.00 0.00 37.93 5.36
3872 4330 4.770874 CCCGGTGCCCTGGTAACG 62.771 72.222 4.61 4.61 40.49 3.18
3905 4363 3.165071 AGGGGTTCATGAAATTGGACAC 58.835 45.455 10.35 0.00 0.00 3.67
3911 4369 5.393461 GGTTCATGAAATTGGACACATCCTC 60.393 44.000 10.35 0.00 46.43 3.71
3919 4377 0.175760 GGACACATCCTCGCTGCTAA 59.824 55.000 0.00 0.00 42.45 3.09
3974 4432 1.555533 GTTCCTAGCTGGCAGGTAAGT 59.444 52.381 24.90 0.00 34.56 2.24
4007 4465 8.701895 CCTACAATTTCACCTAAGGAGTGTATA 58.298 37.037 0.00 0.00 36.58 1.47
4098 4556 5.902613 TGGATGATTTCCTTGCTTACTTG 57.097 39.130 0.00 0.00 45.68 3.16
4306 4790 3.681593 TCATTTTTGCACCATTCCAGG 57.318 42.857 0.00 0.00 0.00 4.45
4393 4885 7.661437 GGCATCACCAGAATAGTCAATATTGTA 59.339 37.037 14.97 2.03 38.86 2.41
4596 5095 3.764434 ACTACACATCATCCTCGTTCTGT 59.236 43.478 0.00 0.00 0.00 3.41
4609 5108 5.123502 TCCTCGTTCTGTATGTACTGAGTTC 59.876 44.000 0.00 0.00 35.92 3.01
4619 5118 4.607293 TGTACTGAGTTCTGAACTGCAT 57.393 40.909 26.47 13.51 43.03 3.96
4644 5149 7.913674 AAAAACCTTTTGAACTATGCAAACA 57.086 28.000 0.00 0.00 35.20 2.83
4685 5191 8.547967 TGTCTTTTCTTGGTACTATAGCAAAG 57.452 34.615 0.00 1.33 44.47 2.77
4727 5233 7.004555 TCTAAAAGAAGGAACACAGCTATCA 57.995 36.000 0.00 0.00 0.00 2.15
4778 5284 1.407437 GGTCTCCTGATCAACGCCATT 60.407 52.381 0.00 0.00 0.00 3.16
4790 5296 0.255890 ACGCCATTAACAGCATCCCT 59.744 50.000 0.04 0.00 0.00 4.20
4863 5369 3.427233 GGTAAAGATGCTGCTGCTCAAAG 60.427 47.826 17.00 0.00 40.48 2.77
4894 5401 2.247699 TGGAAGGCTACCTGAAGCTA 57.752 50.000 0.00 0.00 42.37 3.32
5083 5591 0.178891 TCTTCTTCCTGCAGAGGGGT 60.179 55.000 17.39 0.00 40.25 4.95
5089 5597 1.457643 CCTGCAGAGGGGTCCGATA 60.458 63.158 17.39 0.00 35.40 2.92
5188 5696 3.009115 GTCTGCCTGCCCTACCCA 61.009 66.667 0.00 0.00 0.00 4.51
5227 5735 4.748102 TCGCAAGTTACTGATTTCGACTTT 59.252 37.500 0.00 0.00 39.48 2.66
5279 5787 4.682050 GCTTCTCTTCCTCCAACTGTATCC 60.682 50.000 0.00 0.00 0.00 2.59
5435 5947 8.208224 TCACCTTGTATCAGAGTAGAACAAAAA 58.792 33.333 0.00 0.00 30.30 1.94
5503 6015 2.937149 CTGCTGATGAGTTCATGACAGG 59.063 50.000 9.91 0.00 36.57 4.00
5524 6036 6.042143 CAGGTTTTTGCAACATTTCAGTAGT 58.958 36.000 0.00 0.00 0.00 2.73
5557 6069 3.059097 AGCCCTGACATTATGGGATTCT 58.941 45.455 1.66 0.00 43.47 2.40
5740 6252 8.145122 AGAACATATAAAAGACGGATCCTTCTC 58.855 37.037 20.29 6.99 0.00 2.87
5741 6253 7.361457 ACATATAAAAGACGGATCCTTCTCA 57.639 36.000 20.29 9.82 0.00 3.27
5742 6254 7.792032 ACATATAAAAGACGGATCCTTCTCAA 58.208 34.615 20.29 9.81 0.00 3.02
5787 6299 1.379443 ACATGGAGCAGCCCACATG 60.379 57.895 16.07 16.07 44.61 3.21
5862 6374 5.128991 AGCTCATCAGAGATGATCTTCAACA 59.871 40.000 9.86 0.00 44.98 3.33
5866 6378 5.082251 TCAGAGATGATCTTCAACACTGG 57.918 43.478 10.90 2.07 38.02 4.00
5905 6418 4.690748 GTGGTCGTGAAAATTCATCAGAGA 59.309 41.667 0.00 0.00 39.73 3.10
5946 6459 3.544684 AGAGGCAAATCATCGTGCATAA 58.455 40.909 0.00 0.00 42.74 1.90
6027 6540 2.357034 TTGTTGACGCTCGGCTCC 60.357 61.111 0.00 0.00 0.00 4.70
6048 6561 2.328099 GCTGGCGTTGCTGCTAGTT 61.328 57.895 0.00 0.00 44.45 2.24
6063 6576 2.183679 CTAGTTGCAAGAGGGGAGTCT 58.816 52.381 0.00 0.00 0.00 3.24
6066 6579 1.280421 GTTGCAAGAGGGGAGTCTGAT 59.720 52.381 0.00 0.00 0.00 2.90
6093 6606 2.971598 CGGTCTGCCCCTTGTGGAT 61.972 63.158 0.00 0.00 35.39 3.41
6183 6696 3.254654 CGCCGTATGTCCTGCGTG 61.255 66.667 0.00 0.00 41.95 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 57 9.883142 TTCTTGAATAAGTTTGACCACAATTTT 57.117 25.926 0.00 0.00 35.38 1.82
143 181 4.633126 TCAGCAGTTTAGCTTGAGCATTAG 59.367 41.667 5.70 0.00 43.70 1.73
145 183 3.415212 TCAGCAGTTTAGCTTGAGCATT 58.585 40.909 5.70 0.00 43.70 3.56
162 200 5.465056 GCTGTCAATCCTATTAACTCTCAGC 59.535 44.000 0.00 0.00 37.00 4.26
168 206 9.686683 AAATGTAAGCTGTCAATCCTATTAACT 57.313 29.630 0.00 0.00 0.00 2.24
191 229 6.402222 TGCACTTGTTGTTTTCCTTACAAAT 58.598 32.000 0.00 0.00 37.26 2.32
192 230 5.784177 TGCACTTGTTGTTTTCCTTACAAA 58.216 33.333 0.00 0.00 37.26 2.83
197 235 3.763897 AGTCTGCACTTGTTGTTTTCCTT 59.236 39.130 0.00 0.00 0.00 3.36
225 263 3.675348 TCGGAGTTCTATTCCCCTACA 57.325 47.619 0.00 0.00 0.00 2.74
226 264 3.959449 ACTTCGGAGTTCTATTCCCCTAC 59.041 47.826 0.00 0.00 29.87 3.18
227 265 4.261411 ACTTCGGAGTTCTATTCCCCTA 57.739 45.455 0.00 0.00 29.87 3.53
231 270 4.503370 CGCTTAACTTCGGAGTTCTATTCC 59.497 45.833 13.67 0.00 44.75 3.01
241 280 0.315886 TGAGCACGCTTAACTTCGGA 59.684 50.000 0.00 0.00 0.00 4.55
243 282 0.716108 CCTGAGCACGCTTAACTTCG 59.284 55.000 0.00 0.00 0.00 3.79
244 283 0.444260 GCCTGAGCACGCTTAACTTC 59.556 55.000 0.00 0.00 39.53 3.01
260 299 2.040278 CTCTCACTCCCCCAGCCT 59.960 66.667 0.00 0.00 0.00 4.58
267 306 0.325671 TCACCCATCCTCTCACTCCC 60.326 60.000 0.00 0.00 0.00 4.30
269 308 0.827368 GGTCACCCATCCTCTCACTC 59.173 60.000 0.00 0.00 0.00 3.51
291 331 3.343617 TCCAAATCGCCTAACTTCTTGG 58.656 45.455 0.00 0.00 34.44 3.61
294 334 4.843728 TCATTCCAAATCGCCTAACTTCT 58.156 39.130 0.00 0.00 0.00 2.85
303 343 2.945008 TGGATCACTCATTCCAAATCGC 59.055 45.455 0.00 0.00 39.05 4.58
304 344 3.940852 TGTGGATCACTCATTCCAAATCG 59.059 43.478 0.00 0.00 43.42 3.34
466 539 1.572447 GCACGAACCAGCGCTAAAA 59.428 52.632 10.99 0.00 33.86 1.52
489 562 5.066505 GGTTCGTAAGGGTCTTTAGTATCGA 59.933 44.000 0.00 0.00 38.47 3.59
492 565 4.098501 CCGGTTCGTAAGGGTCTTTAGTAT 59.901 45.833 0.00 0.00 38.47 2.12
501 574 3.483808 TTAAAACCGGTTCGTAAGGGT 57.516 42.857 22.53 0.00 38.47 4.34
502 575 3.365264 GCTTTAAAACCGGTTCGTAAGGG 60.365 47.826 22.53 16.98 38.47 3.95
503 576 3.499537 AGCTTTAAAACCGGTTCGTAAGG 59.500 43.478 22.53 20.95 38.47 2.69
504 577 4.377738 GGAGCTTTAAAACCGGTTCGTAAG 60.378 45.833 22.53 21.96 0.00 2.34
505 578 3.498018 GGAGCTTTAAAACCGGTTCGTAA 59.502 43.478 22.53 18.41 0.00 3.18
506 579 3.066380 GGAGCTTTAAAACCGGTTCGTA 58.934 45.455 22.53 13.30 0.00 3.43
507 580 1.875514 GGAGCTTTAAAACCGGTTCGT 59.124 47.619 22.53 14.40 0.00 3.85
508 581 1.136169 CGGAGCTTTAAAACCGGTTCG 60.136 52.381 22.53 12.55 41.41 3.95
509 582 2.291465 AACGGAGCTTTAAAACCGGTTC 59.709 45.455 22.53 6.84 43.44 3.62
510 583 2.300433 AACGGAGCTTTAAAACCGGTT 58.700 42.857 15.86 15.86 43.44 4.44
514 587 6.309712 AGTAGAAAACGGAGCTTTAAAACC 57.690 37.500 0.00 0.00 0.00 3.27
515 588 8.081208 ACTAGTAGAAAACGGAGCTTTAAAAC 57.919 34.615 3.59 0.00 0.00 2.43
516 589 9.415544 CTACTAGTAGAAAACGGAGCTTTAAAA 57.584 33.333 23.20 0.00 35.21 1.52
517 590 8.579863 ACTACTAGTAGAAAACGGAGCTTTAAA 58.420 33.333 31.93 0.00 36.97 1.52
518 591 8.115490 ACTACTAGTAGAAAACGGAGCTTTAA 57.885 34.615 31.93 0.00 36.97 1.52
519 592 7.693969 ACTACTAGTAGAAAACGGAGCTTTA 57.306 36.000 31.93 0.00 36.97 1.85
520 593 6.587206 ACTACTAGTAGAAAACGGAGCTTT 57.413 37.500 31.93 6.02 36.97 3.51
521 594 6.388278 CAACTACTAGTAGAAAACGGAGCTT 58.612 40.000 31.93 11.97 36.97 3.74
522 595 5.621781 GCAACTACTAGTAGAAAACGGAGCT 60.622 44.000 31.93 6.70 36.97 4.09
523 596 4.562000 GCAACTACTAGTAGAAAACGGAGC 59.438 45.833 31.93 18.89 36.97 4.70
524 597 5.952033 AGCAACTACTAGTAGAAAACGGAG 58.048 41.667 31.93 9.21 36.97 4.63
525 598 5.474532 TGAGCAACTACTAGTAGAAAACGGA 59.525 40.000 31.93 10.47 36.97 4.69
526 599 5.572126 GTGAGCAACTACTAGTAGAAAACGG 59.428 44.000 31.93 16.18 36.97 4.44
527 600 5.572126 GGTGAGCAACTACTAGTAGAAAACG 59.428 44.000 31.93 16.91 36.97 3.60
528 601 5.868258 GGGTGAGCAACTACTAGTAGAAAAC 59.132 44.000 31.93 19.70 36.97 2.43
529 602 5.778750 AGGGTGAGCAACTACTAGTAGAAAA 59.221 40.000 31.93 11.33 36.97 2.29
530 603 5.331069 AGGGTGAGCAACTACTAGTAGAAA 58.669 41.667 31.93 10.72 36.97 2.52
531 604 4.931914 AGGGTGAGCAACTACTAGTAGAA 58.068 43.478 31.93 10.41 36.97 2.10
532 605 4.587976 AGGGTGAGCAACTACTAGTAGA 57.412 45.455 31.93 9.49 36.97 2.59
533 606 5.651139 TGTTAGGGTGAGCAACTACTAGTAG 59.349 44.000 25.30 25.30 39.04 2.57
534 607 5.573219 TGTTAGGGTGAGCAACTACTAGTA 58.427 41.667 1.89 1.89 0.00 1.82
535 608 4.413760 TGTTAGGGTGAGCAACTACTAGT 58.586 43.478 0.00 0.00 0.00 2.57
536 609 5.599999 ATGTTAGGGTGAGCAACTACTAG 57.400 43.478 0.00 0.00 0.00 2.57
537 610 7.670605 AATATGTTAGGGTGAGCAACTACTA 57.329 36.000 0.00 0.00 0.00 1.82
538 611 6.561519 AATATGTTAGGGTGAGCAACTACT 57.438 37.500 0.00 0.00 0.00 2.57
539 612 7.041984 GCTAAATATGTTAGGGTGAGCAACTAC 60.042 40.741 0.00 0.00 0.00 2.73
540 613 6.990349 GCTAAATATGTTAGGGTGAGCAACTA 59.010 38.462 0.00 0.00 0.00 2.24
541 614 5.823045 GCTAAATATGTTAGGGTGAGCAACT 59.177 40.000 0.00 0.00 0.00 3.16
550 623 7.603024 GTGGCTTAGTAGCTAAATATGTTAGGG 59.397 40.741 0.00 0.00 46.90 3.53
562 635 4.956700 AGTCTCAATGTGGCTTAGTAGCTA 59.043 41.667 0.00 0.00 46.90 3.32
564 637 6.641947 CACAGTCTCAATGTGGCTTAGTAGC 61.642 48.000 0.00 0.00 43.47 3.58
620 693 0.698238 TTCTCATCCACAAGGGGGTG 59.302 55.000 0.00 0.00 40.59 4.61
644 717 6.584185 ATTTTGCTGGAAAATAACGTACCT 57.416 33.333 16.75 0.00 41.60 3.08
653 726 3.250521 CGCCAACAATTTTGCTGGAAAAT 59.749 39.130 15.21 13.23 45.08 1.82
660 733 1.039856 AGACCGCCAACAATTTTGCT 58.960 45.000 0.00 0.00 0.00 3.91
684 757 9.630098 CAAATAATTATGCGATTGCCTAGAATT 57.370 29.630 1.50 3.07 41.78 2.17
777 884 8.630037 TCAAAAAGGATCTAAGTTCAGTTTTCC 58.370 33.333 0.00 0.00 0.00 3.13
793 900 4.202182 CCCGATGATGCATTCAAAAAGGAT 60.202 41.667 0.00 0.00 38.03 3.24
794 901 3.130869 CCCGATGATGCATTCAAAAAGGA 59.869 43.478 0.00 0.00 38.03 3.36
796 903 3.861113 CACCCGATGATGCATTCAAAAAG 59.139 43.478 0.00 0.00 38.03 2.27
830 939 5.163933 CCAGTGATTTTGTACATGCATTTGC 60.164 40.000 0.00 0.00 42.50 3.68
831 940 6.157904 TCCAGTGATTTTGTACATGCATTTG 58.842 36.000 0.00 0.00 0.00 2.32
832 941 6.343716 TCCAGTGATTTTGTACATGCATTT 57.656 33.333 0.00 0.00 0.00 2.32
861 976 3.254060 TCAGCACGAATCTCAAAGCTAC 58.746 45.455 0.00 0.00 0.00 3.58
921 1036 3.265791 CTCTTGGAAACGGATGGAGAAG 58.734 50.000 0.00 0.00 0.00 2.85
924 1039 1.555075 TCCTCTTGGAAACGGATGGAG 59.445 52.381 0.00 0.00 39.87 3.86
1132 1256 4.824515 CGGGAGGGACGAGGAGCT 62.825 72.222 0.00 0.00 0.00 4.09
1197 1321 1.115930 AGCTTCACGTCCCTGACAGT 61.116 55.000 0.93 0.00 32.09 3.55
1198 1322 0.389166 GAGCTTCACGTCCCTGACAG 60.389 60.000 0.00 0.00 32.09 3.51
1199 1323 1.666011 GAGCTTCACGTCCCTGACA 59.334 57.895 0.00 0.00 32.09 3.58
1200 1324 1.079750 GGAGCTTCACGTCCCTGAC 60.080 63.158 0.00 0.00 0.00 3.51
1209 1333 0.169009 GAAACGGCATGGAGCTTCAC 59.831 55.000 0.00 0.00 44.79 3.18
1229 1355 3.801698 ACGGATGTGATGAGAAATCCAG 58.198 45.455 0.00 0.00 38.85 3.86
1231 1357 3.242870 GCAACGGATGTGATGAGAAATCC 60.243 47.826 0.00 0.00 36.10 3.01
1236 1362 1.725641 GTGCAACGGATGTGATGAGA 58.274 50.000 0.00 0.00 0.00 3.27
1249 1375 1.405469 GCGCCATGAAATCGTGCAAC 61.405 55.000 0.00 0.00 33.26 4.17
1274 1407 3.068691 TCCGGCTCCTCGACCTTG 61.069 66.667 0.00 0.00 0.00 3.61
1413 1769 7.865706 AAAAGCAAGGACGATTACATTATCT 57.134 32.000 0.00 0.00 0.00 1.98
1424 1792 2.243602 AACCGTAAAAGCAAGGACGA 57.756 45.000 0.00 0.00 37.50 4.20
1426 1794 3.562557 TGAGAAACCGTAAAAGCAAGGAC 59.437 43.478 0.00 0.00 0.00 3.85
1439 1807 5.237344 AGTTGAGACTGAATTTGAGAAACCG 59.763 40.000 0.00 0.00 33.99 4.44
1457 1825 3.608707 GCACAGTGCATTTCAGAGTTGAG 60.609 47.826 21.22 0.00 44.26 3.02
1458 1826 2.291465 GCACAGTGCATTTCAGAGTTGA 59.709 45.455 21.22 0.00 44.26 3.18
1459 1827 2.658285 GCACAGTGCATTTCAGAGTTG 58.342 47.619 21.22 0.00 44.26 3.16
1460 1828 4.251443 AAGGCACAGTGCATTTCAGAGTT 61.251 43.478 26.78 0.00 45.82 3.01
1461 1829 2.750807 AAGGCACAGTGCATTTCAGAGT 60.751 45.455 26.78 0.00 45.82 3.24
1462 1830 1.884579 AAGGCACAGTGCATTTCAGAG 59.115 47.619 26.78 0.00 45.82 3.35
1463 1831 1.985473 AAGGCACAGTGCATTTCAGA 58.015 45.000 26.78 0.00 45.82 3.27
1494 1868 0.959372 ACACTGCAAGATGCTCTGGC 60.959 55.000 3.78 5.80 43.75 4.85
1521 1895 8.840200 AGGATTCTAGGTCTAACAGACATAAA 57.160 34.615 8.47 4.20 46.79 1.40
1588 1962 1.673168 GTGAGGCATGGGAAAGCTAG 58.327 55.000 0.00 0.00 0.00 3.42
1753 2127 2.526304 TGCTACTATGATGGCGTTCC 57.474 50.000 0.00 0.00 0.00 3.62
1815 2189 0.376152 CGCTTACTGGCTCTGCATTG 59.624 55.000 0.00 0.00 0.00 2.82
1827 2201 0.673644 ATTTGACAGCGGCGCTTACT 60.674 50.000 34.51 17.79 36.40 2.24
1844 2218 3.254060 CGGTCGATGTTCTGAAGTGATT 58.746 45.455 0.00 0.00 0.00 2.57
1934 2308 0.666913 AATGATGGCGCTCTCAATGC 59.333 50.000 7.64 0.00 0.00 3.56
1953 2327 9.665719 TTTTAACAGAATATCAGACATGCTACA 57.334 29.630 0.00 0.00 0.00 2.74
2176 2555 4.460382 AGCAACATTAACATCAACCTCCAG 59.540 41.667 0.00 0.00 0.00 3.86
2277 2656 8.688747 ATCTCTTTGATTTCTGAAGTTTCACT 57.311 30.769 0.00 0.00 30.00 3.41
2281 2660 9.240734 AGCATATCTCTTTGATTTCTGAAGTTT 57.759 29.630 0.00 0.00 36.65 2.66
2283 2662 7.201714 GCAGCATATCTCTTTGATTTCTGAAGT 60.202 37.037 0.00 0.00 36.65 3.01
2284 2663 7.012515 AGCAGCATATCTCTTTGATTTCTGAAG 59.987 37.037 0.00 0.00 36.65 3.02
2289 2668 6.793349 ACAAGCAGCATATCTCTTTGATTTC 58.207 36.000 0.00 0.00 36.65 2.17
2316 2695 5.544176 ACCACCCTACCATAGAGATTATGTG 59.456 44.000 0.00 0.00 0.00 3.21
2317 2696 5.727630 ACCACCCTACCATAGAGATTATGT 58.272 41.667 0.00 0.00 0.00 2.29
2323 2702 9.543231 CTATTAATAACCACCCTACCATAGAGA 57.457 37.037 0.00 0.00 0.00 3.10
2324 2703 9.543231 TCTATTAATAACCACCCTACCATAGAG 57.457 37.037 0.00 0.00 0.00 2.43
2325 2704 9.543231 CTCTATTAATAACCACCCTACCATAGA 57.457 37.037 0.00 0.00 0.00 1.98
2326 2705 9.543231 TCTCTATTAATAACCACCCTACCATAG 57.457 37.037 0.00 0.00 0.00 2.23
2327 2706 9.901651 TTCTCTATTAATAACCACCCTACCATA 57.098 33.333 0.00 0.00 0.00 2.74
2328 2707 8.808240 TTCTCTATTAATAACCACCCTACCAT 57.192 34.615 0.00 0.00 0.00 3.55
2329 2708 8.808240 ATTCTCTATTAATAACCACCCTACCA 57.192 34.615 0.00 0.00 0.00 3.25
2330 2709 9.722184 GAATTCTCTATTAATAACCACCCTACC 57.278 37.037 0.00 0.00 0.00 3.18
2366 2745 6.429791 TCAGAAACATCGAACAGTCAAAAA 57.570 33.333 0.00 0.00 0.00 1.94
2367 2746 6.429791 TTCAGAAACATCGAACAGTCAAAA 57.570 33.333 0.00 0.00 0.00 2.44
2368 2747 6.429791 TTTCAGAAACATCGAACAGTCAAA 57.570 33.333 0.00 0.00 0.00 2.69
2409 2788 4.020485 GGAGGTAAACAAGAAGGCTCACTA 60.020 45.833 0.00 0.00 0.00 2.74
2410 2789 3.244596 GGAGGTAAACAAGAAGGCTCACT 60.245 47.826 0.00 0.00 0.00 3.41
2411 2790 3.075148 GGAGGTAAACAAGAAGGCTCAC 58.925 50.000 0.00 0.00 0.00 3.51
2432 2812 7.252708 TGTTGCTGCATATCATTGAGTTTTAG 58.747 34.615 1.84 0.00 0.00 1.85
2433 2813 7.155655 TGTTGCTGCATATCATTGAGTTTTA 57.844 32.000 1.84 0.00 0.00 1.52
2447 2827 3.797865 GCTTCTTCAAGTTGTTGCTGCAT 60.798 43.478 1.84 0.00 33.23 3.96
2458 2838 4.323104 GGGATACTCACAGCTTCTTCAAGT 60.323 45.833 0.00 0.00 31.45 3.16
2500 2880 9.184523 TCAAAACTGAAAACTTGATCCTTTAGA 57.815 29.630 0.00 0.00 0.00 2.10
2557 2937 0.248417 CATCTGAGACGCTCACCTCG 60.248 60.000 5.59 0.00 35.39 4.63
2567 2947 4.712476 AGATAAACCATGGCATCTGAGAC 58.288 43.478 18.56 1.84 0.00 3.36
2581 2961 7.280876 TCTGCTGTATGAACATGAAGATAAACC 59.719 37.037 0.00 0.00 34.37 3.27
2616 2996 8.398665 GTGAGGTTGATATTTCACTGGAATTAC 58.601 37.037 0.00 0.00 37.53 1.89
2618 2998 7.177878 AGTGAGGTTGATATTTCACTGGAATT 58.822 34.615 5.29 0.00 46.12 2.17
2672 3052 5.616270 TGTGGATGCTACTTTAGAAACACA 58.384 37.500 0.00 0.00 34.72 3.72
2679 3059 5.647658 TGGTTGATTGTGGATGCTACTTTAG 59.352 40.000 0.00 0.00 0.00 1.85
2944 3389 8.288913 CAGAACATTCACATATTTGTACACACA 58.711 33.333 0.00 0.00 33.76 3.72
3129 3583 4.759516 TTTGACCAATTCCTTTAGCGTC 57.240 40.909 0.00 0.00 0.00 5.19
3131 3585 7.264373 AGATATTTGACCAATTCCTTTAGCG 57.736 36.000 0.00 0.00 0.00 4.26
3154 3608 3.071874 TGGGTGCCTGACATAAGAAAG 57.928 47.619 0.00 0.00 0.00 2.62
3203 3657 6.756542 ACAGTTGGATCAGCAAGTTTTAAAAC 59.243 34.615 21.06 21.06 39.17 2.43
3207 3661 4.213270 CGACAGTTGGATCAGCAAGTTTTA 59.787 41.667 0.00 0.00 0.00 1.52
3276 3730 5.100943 GTGAAGATGGTAACTACTCCGAAC 58.899 45.833 0.00 0.00 37.61 3.95
3434 3888 5.404366 TCGCAGCTTTAGTACAACTTTGTAG 59.596 40.000 1.96 0.00 43.67 2.74
3435 3889 5.176223 GTCGCAGCTTTAGTACAACTTTGTA 59.824 40.000 0.00 0.00 42.35 2.41
3436 3890 4.025145 GTCGCAGCTTTAGTACAACTTTGT 60.025 41.667 0.00 0.00 44.86 2.83
3437 3891 4.025229 TGTCGCAGCTTTAGTACAACTTTG 60.025 41.667 0.00 0.00 0.00 2.77
3438 3892 4.124238 TGTCGCAGCTTTAGTACAACTTT 58.876 39.130 0.00 0.00 0.00 2.66
3439 3893 3.724374 TGTCGCAGCTTTAGTACAACTT 58.276 40.909 0.00 0.00 0.00 2.66
3440 3894 3.380479 TGTCGCAGCTTTAGTACAACT 57.620 42.857 0.00 0.00 0.00 3.16
3441 3895 3.493503 ACTTGTCGCAGCTTTAGTACAAC 59.506 43.478 0.00 0.00 0.00 3.32
3442 3896 3.724374 ACTTGTCGCAGCTTTAGTACAA 58.276 40.909 0.00 0.00 0.00 2.41
3443 3897 3.380479 ACTTGTCGCAGCTTTAGTACA 57.620 42.857 0.00 0.00 0.00 2.90
3444 3898 7.306632 CCATATTACTTGTCGCAGCTTTAGTAC 60.307 40.741 0.00 0.00 0.00 2.73
3445 3899 6.700081 CCATATTACTTGTCGCAGCTTTAGTA 59.300 38.462 0.00 0.00 0.00 1.82
3446 3900 5.523916 CCATATTACTTGTCGCAGCTTTAGT 59.476 40.000 0.00 0.00 0.00 2.24
3447 3901 5.753438 TCCATATTACTTGTCGCAGCTTTAG 59.247 40.000 0.00 0.00 0.00 1.85
3448 3902 5.666462 TCCATATTACTTGTCGCAGCTTTA 58.334 37.500 0.00 0.00 0.00 1.85
3449 3903 4.513442 TCCATATTACTTGTCGCAGCTTT 58.487 39.130 0.00 0.00 0.00 3.51
3450 3904 4.137116 TCCATATTACTTGTCGCAGCTT 57.863 40.909 0.00 0.00 0.00 3.74
3451 3905 3.819564 TCCATATTACTTGTCGCAGCT 57.180 42.857 0.00 0.00 0.00 4.24
3452 3906 3.121944 CGATCCATATTACTTGTCGCAGC 59.878 47.826 0.00 0.00 0.00 5.25
3453 3907 3.675225 CCGATCCATATTACTTGTCGCAG 59.325 47.826 0.00 0.00 0.00 5.18
3454 3908 3.319689 TCCGATCCATATTACTTGTCGCA 59.680 43.478 0.00 0.00 0.00 5.10
3455 3909 3.909430 TCCGATCCATATTACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
3456 3910 4.486090 CCTCCGATCCATATTACTTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
3457 3911 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
3458 3912 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
3459 3913 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
3460 3914 4.753186 ACTCCCTCCGATCCATATTACTT 58.247 43.478 0.00 0.00 0.00 2.24
3461 3915 4.405756 ACTCCCTCCGATCCATATTACT 57.594 45.455 0.00 0.00 0.00 2.24
3462 3916 6.793505 ATTACTCCCTCCGATCCATATTAC 57.206 41.667 0.00 0.00 0.00 1.89
3463 3917 6.957606 TGAATTACTCCCTCCGATCCATATTA 59.042 38.462 0.00 0.00 0.00 0.98
3464 3918 5.785423 TGAATTACTCCCTCCGATCCATATT 59.215 40.000 0.00 0.00 0.00 1.28
3465 3919 5.342017 TGAATTACTCCCTCCGATCCATAT 58.658 41.667 0.00 0.00 0.00 1.78
3466 3920 4.747583 TGAATTACTCCCTCCGATCCATA 58.252 43.478 0.00 0.00 0.00 2.74
3467 3921 3.587498 TGAATTACTCCCTCCGATCCAT 58.413 45.455 0.00 0.00 0.00 3.41
3468 3922 3.040655 TGAATTACTCCCTCCGATCCA 57.959 47.619 0.00 0.00 0.00 3.41
3469 3923 4.625607 AATGAATTACTCCCTCCGATCC 57.374 45.455 0.00 0.00 0.00 3.36
3470 3924 6.522054 TGTAAATGAATTACTCCCTCCGATC 58.478 40.000 0.00 0.00 43.60 3.69
3471 3925 6.099845 ACTGTAAATGAATTACTCCCTCCGAT 59.900 38.462 0.00 0.00 43.60 4.18
3472 3926 5.424252 ACTGTAAATGAATTACTCCCTCCGA 59.576 40.000 0.00 0.00 43.60 4.55
3473 3927 5.671493 ACTGTAAATGAATTACTCCCTCCG 58.329 41.667 0.69 0.00 43.60 4.63
3474 3928 7.829706 AGAAACTGTAAATGAATTACTCCCTCC 59.170 37.037 0.69 0.00 43.60 4.30
3475 3929 8.794335 AGAAACTGTAAATGAATTACTCCCTC 57.206 34.615 0.69 0.00 43.60 4.30
3476 3930 8.606830 AGAGAAACTGTAAATGAATTACTCCCT 58.393 33.333 0.00 0.00 43.60 4.20
3477 3931 8.794335 AGAGAAACTGTAAATGAATTACTCCC 57.206 34.615 0.00 0.00 43.60 4.30
3487 3941 8.261492 ACATCAAGCTAGAGAAACTGTAAATG 57.739 34.615 0.00 0.00 0.00 2.32
3530 3984 7.916450 TGTTTTAACACAAAGGTATAAGCACAC 59.084 33.333 0.00 0.00 33.17 3.82
3582 4036 4.141413 TGCCAAGTGCCTAGATAACATCAT 60.141 41.667 0.00 0.00 40.16 2.45
3608 4063 5.075493 AGGAAGACAGAAGTTTTGCATCAT 58.925 37.500 0.00 0.00 33.45 2.45
3632 4088 5.335127 GTGCACTTGGAATGCTAAAGTATG 58.665 41.667 10.32 0.00 43.77 2.39
3633 4089 4.094887 CGTGCACTTGGAATGCTAAAGTAT 59.905 41.667 16.19 0.00 43.77 2.12
3634 4090 3.435327 CGTGCACTTGGAATGCTAAAGTA 59.565 43.478 16.19 0.00 43.77 2.24
3636 4092 2.226437 ACGTGCACTTGGAATGCTAAAG 59.774 45.455 16.19 0.00 43.77 1.85
3637 4093 2.031245 CACGTGCACTTGGAATGCTAAA 60.031 45.455 16.19 0.00 43.77 1.85
3638 4094 1.535028 CACGTGCACTTGGAATGCTAA 59.465 47.619 16.19 0.00 43.77 3.09
3648 4106 4.435386 GCAAAACAAATTTCACGTGCACTT 60.435 37.500 16.19 1.59 31.12 3.16
3650 4108 3.341410 GCAAAACAAATTTCACGTGCAC 58.659 40.909 11.67 6.82 31.12 4.57
3671 4129 8.365399 TCGAGATGCATAACTAAAGTAATTGG 57.635 34.615 0.00 0.00 0.00 3.16
3679 4137 6.891624 GCATGAATCGAGATGCATAACTAAA 58.108 36.000 17.49 0.00 43.75 1.85
3688 4146 7.082602 AGAAATTATTGCATGAATCGAGATGC 58.917 34.615 16.18 16.18 44.42 3.91
3730 4188 4.378459 GGAAATACACAGCTCTGTTTTCCG 60.378 45.833 21.12 6.06 42.81 4.30
3741 4199 7.148340 GGCTTATGATATGAGGAAATACACAGC 60.148 40.741 0.00 0.00 0.00 4.40
3776 4234 4.888239 TCGTTAGAAGAAGTAGCAGGCTAT 59.112 41.667 4.06 0.00 0.00 2.97
3778 4236 3.090037 TCGTTAGAAGAAGTAGCAGGCT 58.910 45.455 0.00 0.00 0.00 4.58
3779 4237 3.128938 TCTCGTTAGAAGAAGTAGCAGGC 59.871 47.826 0.00 0.00 0.00 4.85
3780 4238 4.966965 TCTCGTTAGAAGAAGTAGCAGG 57.033 45.455 0.00 0.00 0.00 4.85
3783 4241 9.389570 GAAGAATATCTCGTTAGAAGAAGTAGC 57.610 37.037 0.00 0.00 34.73 3.58
3786 4244 8.626526 GGAGAAGAATATCTCGTTAGAAGAAGT 58.373 37.037 0.00 0.00 45.54 3.01
3787 4245 8.625651 TGGAGAAGAATATCTCGTTAGAAGAAG 58.374 37.037 0.00 0.00 45.54 2.85
3788 4246 8.521170 TGGAGAAGAATATCTCGTTAGAAGAA 57.479 34.615 0.00 0.00 45.54 2.52
3789 4247 7.993758 TCTGGAGAAGAATATCTCGTTAGAAGA 59.006 37.037 0.00 0.00 45.54 2.87
3790 4248 8.160521 TCTGGAGAAGAATATCTCGTTAGAAG 57.839 38.462 0.00 0.00 45.54 2.85
3795 4253 6.968263 TGATCTGGAGAAGAATATCTCGTT 57.032 37.500 0.00 0.00 45.54 3.85
3800 4258 9.334947 TCAAATGTTGATCTGGAGAAGAATATC 57.665 33.333 0.00 0.00 38.79 1.63
3864 4322 3.568853 CCTACTATGAGTCCCGTTACCAG 59.431 52.174 0.00 0.00 0.00 4.00
3872 4330 3.042059 TGAACCCCTACTATGAGTCCC 57.958 52.381 0.00 0.00 0.00 4.46
3911 4369 1.890979 CCCAGCATCCTTAGCAGCG 60.891 63.158 0.00 0.00 0.00 5.18
3919 4377 1.504275 AAGCTTGACCCCAGCATCCT 61.504 55.000 0.00 0.00 0.00 3.24
3974 4432 3.230134 AGGTGAAATTGTAGGCTTGCAA 58.770 40.909 1.10 1.10 33.36 4.08
4125 4583 9.618890 TCTTCTAATTTTGTCTCATAATCTGGG 57.381 33.333 0.00 0.00 0.00 4.45
4571 5063 5.289675 CAGAACGAGGATGATGTGTAGTTTC 59.710 44.000 0.00 0.00 0.00 2.78
4574 5066 3.764434 ACAGAACGAGGATGATGTGTAGT 59.236 43.478 0.00 0.00 0.00 2.73
4575 5067 4.377839 ACAGAACGAGGATGATGTGTAG 57.622 45.455 0.00 0.00 0.00 2.74
4576 5068 5.359860 ACATACAGAACGAGGATGATGTGTA 59.640 40.000 0.00 0.00 0.00 2.90
4577 5069 4.160439 ACATACAGAACGAGGATGATGTGT 59.840 41.667 0.00 0.00 0.00 3.72
4578 5070 4.686972 ACATACAGAACGAGGATGATGTG 58.313 43.478 0.00 0.00 0.00 3.21
4580 5072 5.917447 CAGTACATACAGAACGAGGATGATG 59.083 44.000 0.00 0.00 0.00 3.07
4596 5095 5.722021 TGCAGTTCAGAACTCAGTACATA 57.278 39.130 13.27 0.00 40.46 2.29
4609 5108 7.492344 AGTTCAAAAGGTTTTTATGCAGTTCAG 59.508 33.333 0.00 0.00 0.00 3.02
4619 5118 9.092876 CTGTTTGCATAGTTCAAAAGGTTTTTA 57.907 29.630 0.00 0.00 35.49 1.52
4661 5167 7.334671 AGCTTTGCTATAGTACCAAGAAAAGAC 59.665 37.037 18.06 11.87 37.88 3.01
4667 5173 8.705594 AGAATAAGCTTTGCTATAGTACCAAGA 58.294 33.333 3.20 0.00 38.25 3.02
4673 5179 8.924303 TCTCCAAGAATAAGCTTTGCTATAGTA 58.076 33.333 3.20 0.00 38.25 1.82
4674 5180 7.796054 TCTCCAAGAATAAGCTTTGCTATAGT 58.204 34.615 3.20 0.00 38.25 2.12
4678 5184 6.418101 ACATCTCCAAGAATAAGCTTTGCTA 58.582 36.000 3.20 0.00 38.25 3.49
4685 5191 9.167311 TCTTTTAGAACATCTCCAAGAATAAGC 57.833 33.333 0.00 0.00 27.75 3.09
4778 5284 0.543277 CTCCTGCAGGGATGCTGTTA 59.457 55.000 32.23 8.89 44.15 2.41
4790 5296 3.443925 CCGTCGAGCTCTCCTGCA 61.444 66.667 12.85 0.00 34.99 4.41
4863 5369 4.822350 GGTAGCCTTCCATCCTGTTTATTC 59.178 45.833 0.00 0.00 0.00 1.75
4894 5401 3.484407 AGCAAGCACAGAAGTTCTTCAT 58.516 40.909 1.56 0.50 28.44 2.57
5083 5591 1.461144 GGAGAGGGGAGCTATCGGA 59.539 63.158 0.00 0.00 0.00 4.55
5127 5635 3.592814 CGCCGAGGCCGATGTAGA 61.593 66.667 8.72 0.00 38.22 2.59
5303 5811 9.638176 AAGCTATTCTTATGATCACAAGGAATT 57.362 29.630 13.63 0.00 32.10 2.17
5435 5947 5.104900 AGCCGGAGTAATGAACTGAACTATT 60.105 40.000 5.05 0.00 39.07 1.73
5436 5948 4.406003 AGCCGGAGTAATGAACTGAACTAT 59.594 41.667 5.05 0.00 39.07 2.12
5437 5949 3.767673 AGCCGGAGTAATGAACTGAACTA 59.232 43.478 5.05 0.00 39.07 2.24
5438 5950 2.567615 AGCCGGAGTAATGAACTGAACT 59.432 45.455 5.05 0.00 39.07 3.01
5439 5951 2.673368 CAGCCGGAGTAATGAACTGAAC 59.327 50.000 5.05 0.00 39.07 3.18
5440 5952 2.301870 ACAGCCGGAGTAATGAACTGAA 59.698 45.455 5.05 0.00 39.07 3.02
5441 5953 1.899814 ACAGCCGGAGTAATGAACTGA 59.100 47.619 5.05 0.00 39.07 3.41
5451 5963 1.045407 TGAACAGTTACAGCCGGAGT 58.955 50.000 5.05 5.20 0.00 3.85
5524 6036 5.567037 ATGTCAGGGCTGCTACATTAATA 57.433 39.130 0.00 0.00 27.64 0.98
5557 6069 4.162131 TGGTAGCTCATCTTGCTGAATGTA 59.838 41.667 0.00 0.00 41.32 2.29
5762 6274 1.436336 GCTGCTCCATGTCCAATGC 59.564 57.895 0.00 0.00 0.00 3.56
5787 6299 4.986659 GTCCAATGCTCATTCATTTATGCC 59.013 41.667 0.00 0.00 34.68 4.40
5862 6374 2.884639 ACAAAATGTTAAGAGCGCCAGT 59.115 40.909 2.29 0.00 0.00 4.00
5866 6378 3.234386 GACCACAAAATGTTAAGAGCGC 58.766 45.455 0.00 0.00 0.00 5.92
5946 6459 0.033228 GCAGCGATAGAGCAGGACAT 59.967 55.000 0.00 0.00 40.15 3.06
6048 6561 2.111384 GTATCAGACTCCCCTCTTGCA 58.889 52.381 0.00 0.00 0.00 4.08
6063 6576 2.364324 GGGCAGACCGATAAGTGTATCA 59.636 50.000 0.00 0.00 36.65 2.15
6066 6579 1.117150 GGGGCAGACCGATAAGTGTA 58.883 55.000 0.00 0.00 41.60 2.90
6093 6606 3.536917 CATAGCGGCCGGTCTGGA 61.537 66.667 36.11 17.69 42.00 3.86
6181 6694 8.810652 TTAAATCTGAGGTGTAATTTTTGCAC 57.189 30.769 0.00 0.52 44.22 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.