Multiple sequence alignment - TraesCS3A01G053900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G053900 chr3A 100.000 3261 0 0 1 3261 30995675 30998935 0.000000e+00 6023
1 TraesCS3A01G053900 chr3A 83.104 509 62 14 1552 2046 31559578 31560076 2.990000e-120 442
2 TraesCS3A01G053900 chr3A 84.828 290 41 3 1681 1970 482184064 482183778 4.120000e-74 289
3 TraesCS3A01G053900 chr3A 84.615 195 28 2 1299 1492 482184461 482184268 3.320000e-45 193
4 TraesCS3A01G053900 chrUn 90.156 2570 165 33 176 2723 270383793 270381290 0.000000e+00 3264
5 TraesCS3A01G053900 chrUn 86.355 513 57 10 176 685 326232535 326232033 6.150000e-152 547
6 TraesCS3A01G053900 chrUn 86.355 513 57 10 176 685 344141688 344141186 6.150000e-152 547
7 TraesCS3A01G053900 chrUn 84.685 555 59 9 2710 3261 270381180 270380649 6.200000e-147 531
8 TraesCS3A01G053900 chr4B 86.667 990 89 19 1172 2157 616736741 616735791 0.000000e+00 1057
9 TraesCS3A01G053900 chr5A 86.525 987 81 22 1172 2154 665080073 665079135 0.000000e+00 1038
10 TraesCS3A01G053900 chr5A 87.179 195 22 3 1321 1512 665443834 665444028 5.480000e-53 219
11 TraesCS3A01G053900 chr4D 86.080 977 85 22 1184 2157 484495094 484494166 0.000000e+00 1003
12 TraesCS3A01G053900 chr4D 87.568 185 22 1 1321 1504 484620949 484621133 2.550000e-51 213
13 TraesCS3A01G053900 chr3B 84.055 508 59 11 1552 2046 37971110 37971608 1.370000e-128 470
14 TraesCS3A01G053900 chr3B 82.770 296 48 3 1681 1976 471800570 471800278 8.970000e-66 261
15 TraesCS3A01G053900 chr3D 83.858 508 60 11 1552 2046 21793427 21793925 6.370000e-127 464
16 TraesCS3A01G053900 chr3D 84.483 290 42 3 1681 1970 362069958 362069672 1.920000e-72 283
17 TraesCS3A01G053900 chr1D 82.315 311 44 10 1673 1973 454493238 454492929 3.230000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G053900 chr3A 30995675 30998935 3260 False 6023.0 6023 100.0000 1 3261 1 chr3A.!!$F1 3260
1 TraesCS3A01G053900 chr3A 482183778 482184461 683 True 241.0 289 84.7215 1299 1970 2 chr3A.!!$R1 671
2 TraesCS3A01G053900 chrUn 270380649 270383793 3144 True 1897.5 3264 87.4205 176 3261 2 chrUn.!!$R3 3085
3 TraesCS3A01G053900 chrUn 326232033 326232535 502 True 547.0 547 86.3550 176 685 1 chrUn.!!$R1 509
4 TraesCS3A01G053900 chrUn 344141186 344141688 502 True 547.0 547 86.3550 176 685 1 chrUn.!!$R2 509
5 TraesCS3A01G053900 chr4B 616735791 616736741 950 True 1057.0 1057 86.6670 1172 2157 1 chr4B.!!$R1 985
6 TraesCS3A01G053900 chr5A 665079135 665080073 938 True 1038.0 1038 86.5250 1172 2154 1 chr5A.!!$R1 982
7 TraesCS3A01G053900 chr4D 484494166 484495094 928 True 1003.0 1003 86.0800 1184 2157 1 chr4D.!!$R1 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 224 0.112412 TCTTCCCAGAAAAGCCACCC 59.888 55.0 0.00 0.0 0.0 4.61 F
1089 1091 0.459899 ACACTAATCGATCCAGCGCA 59.540 50.0 11.47 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1214 1216 0.038618 TGTCGTTGTCGTCCTCCATG 60.039 55.0 0.0 0.0 38.33 3.66 R
2927 3110 0.314935 AACCCATGCTGAACAAAGCG 59.685 50.0 0.0 0.0 46.65 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.355596 CATCCTCAAGTAACTCAGATGACC 58.644 45.833 0.00 0.00 33.16 4.02
24 25 3.769844 TCCTCAAGTAACTCAGATGACCC 59.230 47.826 0.00 0.00 0.00 4.46
25 26 3.515502 CCTCAAGTAACTCAGATGACCCA 59.484 47.826 0.00 0.00 0.00 4.51
26 27 4.499183 CTCAAGTAACTCAGATGACCCAC 58.501 47.826 0.00 0.00 0.00 4.61
27 28 3.901222 TCAAGTAACTCAGATGACCCACA 59.099 43.478 0.00 0.00 0.00 4.17
28 29 3.963428 AGTAACTCAGATGACCCACAC 57.037 47.619 0.00 0.00 0.00 3.82
29 30 3.511477 AGTAACTCAGATGACCCACACT 58.489 45.455 0.00 0.00 0.00 3.55
30 31 2.847327 AACTCAGATGACCCACACTG 57.153 50.000 0.00 0.00 32.82 3.66
31 32 2.015456 ACTCAGATGACCCACACTGA 57.985 50.000 0.00 0.00 36.27 3.41
32 33 2.544721 ACTCAGATGACCCACACTGAT 58.455 47.619 0.00 0.00 36.69 2.90
33 34 2.235650 ACTCAGATGACCCACACTGATG 59.764 50.000 0.00 0.00 36.69 3.07
34 35 2.235650 CTCAGATGACCCACACTGATGT 59.764 50.000 0.00 0.00 40.80 3.06
55 56 4.739195 GTGACATCTCACAGTTAGGAGAC 58.261 47.826 0.00 0.00 45.57 3.36
56 57 3.764434 TGACATCTCACAGTTAGGAGACC 59.236 47.826 0.00 0.00 42.49 3.85
57 58 3.764434 GACATCTCACAGTTAGGAGACCA 59.236 47.826 0.00 0.00 42.49 4.02
58 59 4.357325 ACATCTCACAGTTAGGAGACCAT 58.643 43.478 0.00 0.00 42.49 3.55
59 60 4.161189 ACATCTCACAGTTAGGAGACCATG 59.839 45.833 0.00 0.00 42.49 3.66
60 61 3.779444 TCTCACAGTTAGGAGACCATGT 58.221 45.455 0.00 0.00 35.34 3.21
61 62 4.160329 TCTCACAGTTAGGAGACCATGTT 58.840 43.478 0.00 0.00 35.34 2.71
62 63 5.330233 TCTCACAGTTAGGAGACCATGTTA 58.670 41.667 0.00 0.00 35.34 2.41
63 64 5.958380 TCTCACAGTTAGGAGACCATGTTAT 59.042 40.000 0.00 0.00 35.34 1.89
64 65 6.440647 TCTCACAGTTAGGAGACCATGTTATT 59.559 38.462 0.00 0.00 35.34 1.40
65 66 7.618117 TCTCACAGTTAGGAGACCATGTTATTA 59.382 37.037 0.00 0.00 35.34 0.98
66 67 8.319057 TCACAGTTAGGAGACCATGTTATTAT 57.681 34.615 0.00 0.00 0.00 1.28
67 68 8.768397 TCACAGTTAGGAGACCATGTTATTATT 58.232 33.333 0.00 0.00 0.00 1.40
68 69 9.396022 CACAGTTAGGAGACCATGTTATTATTT 57.604 33.333 0.00 0.00 0.00 1.40
69 70 9.396022 ACAGTTAGGAGACCATGTTATTATTTG 57.604 33.333 0.00 0.00 0.00 2.32
70 71 9.613428 CAGTTAGGAGACCATGTTATTATTTGA 57.387 33.333 0.00 0.00 0.00 2.69
75 76 9.753674 AGGAGACCATGTTATTATTTGAAGAAA 57.246 29.630 0.00 0.00 0.00 2.52
99 100 9.807649 AAAAATATTGATCATAGTTTGTGAGCC 57.192 29.630 0.00 0.00 36.10 4.70
100 101 8.757982 AAATATTGATCATAGTTTGTGAGCCT 57.242 30.769 0.00 0.00 31.27 4.58
101 102 9.851686 AAATATTGATCATAGTTTGTGAGCCTA 57.148 29.630 0.00 0.00 31.27 3.93
104 105 8.839310 ATTGATCATAGTTTGTGAGCCTATAC 57.161 34.615 0.00 0.00 31.27 1.47
105 106 7.360113 TGATCATAGTTTGTGAGCCTATACA 57.640 36.000 0.00 0.00 31.27 2.29
106 107 7.966812 TGATCATAGTTTGTGAGCCTATACAT 58.033 34.615 0.00 0.00 31.27 2.29
107 108 9.088987 TGATCATAGTTTGTGAGCCTATACATA 57.911 33.333 0.00 0.00 31.27 2.29
110 111 9.710900 TCATAGTTTGTGAGCCTATACATATTG 57.289 33.333 0.00 0.00 0.00 1.90
111 112 6.867662 AGTTTGTGAGCCTATACATATTGC 57.132 37.500 0.00 0.00 0.00 3.56
112 113 6.595682 AGTTTGTGAGCCTATACATATTGCT 58.404 36.000 0.00 0.00 34.40 3.91
113 114 7.056635 AGTTTGTGAGCCTATACATATTGCTT 58.943 34.615 0.00 0.00 31.23 3.91
114 115 6.866010 TTGTGAGCCTATACATATTGCTTG 57.134 37.500 0.00 0.00 31.23 4.01
115 116 5.928976 TGTGAGCCTATACATATTGCTTGT 58.071 37.500 0.00 0.00 31.23 3.16
116 117 6.356556 TGTGAGCCTATACATATTGCTTGTT 58.643 36.000 0.00 0.00 31.23 2.83
117 118 6.483307 TGTGAGCCTATACATATTGCTTGTTC 59.517 38.462 0.00 0.00 31.23 3.18
118 119 6.708054 GTGAGCCTATACATATTGCTTGTTCT 59.292 38.462 0.00 0.00 31.23 3.01
119 120 6.931281 TGAGCCTATACATATTGCTTGTTCTC 59.069 38.462 0.00 0.00 31.23 2.87
120 121 7.072263 AGCCTATACATATTGCTTGTTCTCT 57.928 36.000 0.00 0.00 0.00 3.10
121 122 7.158021 AGCCTATACATATTGCTTGTTCTCTC 58.842 38.462 0.00 0.00 0.00 3.20
122 123 7.016072 AGCCTATACATATTGCTTGTTCTCTCT 59.984 37.037 0.00 0.00 0.00 3.10
123 124 7.330700 GCCTATACATATTGCTTGTTCTCTCTC 59.669 40.741 0.00 0.00 0.00 3.20
124 125 8.584157 CCTATACATATTGCTTGTTCTCTCTCT 58.416 37.037 0.00 0.00 0.00 3.10
157 158 2.985957 TTACCCGTGCAATACCTACC 57.014 50.000 0.00 0.00 0.00 3.18
158 159 1.863325 TACCCGTGCAATACCTACCA 58.137 50.000 0.00 0.00 0.00 3.25
159 160 0.251073 ACCCGTGCAATACCTACCAC 59.749 55.000 0.00 0.00 0.00 4.16
160 161 0.250793 CCCGTGCAATACCTACCACA 59.749 55.000 0.00 0.00 0.00 4.17
161 162 1.339247 CCCGTGCAATACCTACCACAA 60.339 52.381 0.00 0.00 0.00 3.33
162 163 1.735571 CCGTGCAATACCTACCACAAC 59.264 52.381 0.00 0.00 0.00 3.32
163 164 1.735571 CGTGCAATACCTACCACAACC 59.264 52.381 0.00 0.00 0.00 3.77
164 165 2.785562 GTGCAATACCTACCACAACCA 58.214 47.619 0.00 0.00 0.00 3.67
165 166 3.150767 GTGCAATACCTACCACAACCAA 58.849 45.455 0.00 0.00 0.00 3.67
166 167 3.761752 GTGCAATACCTACCACAACCAAT 59.238 43.478 0.00 0.00 0.00 3.16
167 168 3.761218 TGCAATACCTACCACAACCAATG 59.239 43.478 0.00 0.00 0.00 2.82
168 169 3.428862 GCAATACCTACCACAACCAATGC 60.429 47.826 0.00 0.00 0.00 3.56
169 170 4.016444 CAATACCTACCACAACCAATGCT 58.984 43.478 0.00 0.00 0.00 3.79
170 171 2.675658 ACCTACCACAACCAATGCTT 57.324 45.000 0.00 0.00 0.00 3.91
171 172 2.238521 ACCTACCACAACCAATGCTTG 58.761 47.619 0.00 0.00 0.00 4.01
172 173 2.158534 ACCTACCACAACCAATGCTTGA 60.159 45.455 0.00 0.00 0.00 3.02
173 174 3.091545 CCTACCACAACCAATGCTTGAT 58.908 45.455 0.00 0.00 0.00 2.57
174 175 3.129287 CCTACCACAACCAATGCTTGATC 59.871 47.826 0.00 0.00 0.00 2.92
175 176 1.895131 ACCACAACCAATGCTTGATCC 59.105 47.619 0.00 0.00 0.00 3.36
176 177 1.205417 CCACAACCAATGCTTGATCCC 59.795 52.381 0.00 0.00 0.00 3.85
177 178 2.173519 CACAACCAATGCTTGATCCCT 58.826 47.619 0.00 0.00 0.00 4.20
178 179 3.355378 CACAACCAATGCTTGATCCCTA 58.645 45.455 0.00 0.00 0.00 3.53
179 180 3.763360 CACAACCAATGCTTGATCCCTAA 59.237 43.478 0.00 0.00 0.00 2.69
180 181 4.019174 ACAACCAATGCTTGATCCCTAAG 58.981 43.478 0.00 0.00 0.00 2.18
181 182 3.303351 ACCAATGCTTGATCCCTAAGG 57.697 47.619 0.00 0.00 0.00 2.69
221 223 1.248486 GTCTTCCCAGAAAAGCCACC 58.752 55.000 0.00 0.00 0.00 4.61
222 224 0.112412 TCTTCCCAGAAAAGCCACCC 59.888 55.000 0.00 0.00 0.00 4.61
228 230 1.272985 CCAGAAAAGCCACCCCCAATA 60.273 52.381 0.00 0.00 0.00 1.90
230 232 2.431782 CAGAAAAGCCACCCCCAATATG 59.568 50.000 0.00 0.00 0.00 1.78
234 236 3.767309 AAGCCACCCCCAATATGTTAA 57.233 42.857 0.00 0.00 0.00 2.01
235 237 3.312736 AGCCACCCCCAATATGTTAAG 57.687 47.619 0.00 0.00 0.00 1.85
246 248 7.147966 CCCCCAATATGTTAAGAGTACCAAAAC 60.148 40.741 0.00 0.00 0.00 2.43
248 250 8.798402 CCCAATATGTTAAGAGTACCAAAACAA 58.202 33.333 5.20 0.00 34.08 2.83
257 259 9.856162 TTAAGAGTACCAAAACAATCCTAAAGT 57.144 29.630 0.00 0.00 0.00 2.66
290 292 3.515630 TCAAGACAGAGACATTCATCGC 58.484 45.455 0.00 0.00 0.00 4.58
298 300 3.126831 GAGACATTCATCGCTTACCCTG 58.873 50.000 0.00 0.00 0.00 4.45
310 312 3.869246 CGCTTACCCTGTTACTTATGTGG 59.131 47.826 0.00 0.00 0.00 4.17
316 318 3.343617 CCTGTTACTTATGTGGTGGTGG 58.656 50.000 0.00 0.00 0.00 4.61
317 319 3.244770 CCTGTTACTTATGTGGTGGTGGT 60.245 47.826 0.00 0.00 0.00 4.16
318 320 4.020039 CCTGTTACTTATGTGGTGGTGGTA 60.020 45.833 0.00 0.00 0.00 3.25
319 321 5.513441 CCTGTTACTTATGTGGTGGTGGTAA 60.513 44.000 0.00 0.00 0.00 2.85
320 322 5.307204 TGTTACTTATGTGGTGGTGGTAAC 58.693 41.667 0.00 0.00 38.41 2.50
356 358 4.379813 CGTCCTCCCAATTTTCTCACATTG 60.380 45.833 0.00 0.00 0.00 2.82
361 363 6.295462 CCTCCCAATTTTCTCACATTGACAAT 60.295 38.462 0.00 0.00 32.91 2.71
362 364 7.093814 CCTCCCAATTTTCTCACATTGACAATA 60.094 37.037 0.00 0.00 32.91 1.90
371 373 9.868277 TTTCTCACATTGACAATAGTTTGTTTT 57.132 25.926 0.00 0.00 46.01 2.43
404 406 5.164620 TCTGAGTATGTTGAGATGGCAAA 57.835 39.130 0.00 0.00 0.00 3.68
405 407 4.937620 TCTGAGTATGTTGAGATGGCAAAC 59.062 41.667 0.00 0.00 0.00 2.93
406 408 4.650734 TGAGTATGTTGAGATGGCAAACA 58.349 39.130 5.06 5.06 0.00 2.83
411 413 3.286353 TGTTGAGATGGCAAACAAGTCA 58.714 40.909 0.17 0.00 0.00 3.41
418 420 2.235016 TGGCAAACAAGTCATGTACCC 58.765 47.619 0.00 0.00 42.99 3.69
419 421 2.158534 TGGCAAACAAGTCATGTACCCT 60.159 45.455 0.00 0.00 42.99 4.34
428 430 4.816048 AGTCATGTACCCTCCTCTATGA 57.184 45.455 0.00 0.00 0.00 2.15
429 431 4.475345 AGTCATGTACCCTCCTCTATGAC 58.525 47.826 9.51 9.51 42.72 3.06
430 432 3.574826 GTCATGTACCCTCCTCTATGACC 59.425 52.174 0.00 0.00 38.79 4.02
450 452 2.612212 CCGTGCAACTTGAACAACTACT 59.388 45.455 0.68 0.00 31.75 2.57
455 457 4.335315 TGCAACTTGAACAACTACTCCTTG 59.665 41.667 0.00 0.00 0.00 3.61
462 464 2.699954 ACAACTACTCCTTGAATGCCG 58.300 47.619 0.00 0.00 0.00 5.69
469 471 2.166664 ACTCCTTGAATGCCGACTAGTC 59.833 50.000 13.18 13.18 0.00 2.59
479 481 2.760650 TGCCGACTAGTCTGTCATCATT 59.239 45.455 20.34 0.00 36.82 2.57
484 486 5.393569 CCGACTAGTCTGTCATCATTCTTGT 60.394 44.000 20.34 0.00 36.82 3.16
487 489 7.180322 ACTAGTCTGTCATCATTCTTGTCAT 57.820 36.000 0.00 0.00 0.00 3.06
505 507 8.708742 TCTTGTCATGATTTTTGTAGTTACTCG 58.291 33.333 0.00 0.00 0.00 4.18
507 509 6.128391 TGTCATGATTTTTGTAGTTACTCGGC 60.128 38.462 0.00 0.00 0.00 5.54
508 510 4.914312 TGATTTTTGTAGTTACTCGGCG 57.086 40.909 0.00 0.00 0.00 6.46
541 543 8.800332 TCGTTTACCTATATTTCCTAGTCATCC 58.200 37.037 0.00 0.00 0.00 3.51
581 583 8.595362 TCTGAGTTTCCACTAAGAATCATCTA 57.405 34.615 0.00 0.00 37.56 1.98
586 588 9.268282 AGTTTCCACTAAGAATCATCTAACCTA 57.732 33.333 0.00 0.00 33.77 3.08
589 591 8.466617 TCCACTAAGAATCATCTAACCTAGAC 57.533 38.462 0.00 0.00 37.69 2.59
591 593 6.858993 CACTAAGAATCATCTAACCTAGACGC 59.141 42.308 0.00 0.00 37.69 5.19
593 595 4.215908 AGAATCATCTAACCTAGACGCCA 58.784 43.478 0.00 0.00 37.69 5.69
596 598 1.041437 ATCTAACCTAGACGCCAGGC 58.959 55.000 0.00 0.00 37.69 4.85
601 603 1.321074 ACCTAGACGCCAGGCTACAC 61.321 60.000 10.54 0.00 36.79 2.90
602 604 1.064296 CTAGACGCCAGGCTACACG 59.936 63.158 10.54 0.00 36.79 4.49
639 641 4.322080 TTGACCAGACGGCTATCAATAG 57.678 45.455 12.08 0.00 34.57 1.73
640 642 3.296854 TGACCAGACGGCTATCAATAGT 58.703 45.455 1.90 0.00 34.57 2.12
644 646 4.345257 ACCAGACGGCTATCAATAGTTGAT 59.655 41.667 9.80 9.80 44.16 2.57
646 648 7.181862 ACCAGACGGCTATCAATAGTTGATTG 61.182 42.308 10.12 9.47 41.10 2.67
664 666 8.954350 AGTTGATTGAGAGATAACAATTTCCAG 58.046 33.333 0.00 0.00 36.94 3.86
710 712 9.444600 TTCTTAATTTTAACACGATAGCCTTCT 57.555 29.630 0.00 0.00 42.67 2.85
711 713 9.444600 TCTTAATTTTAACACGATAGCCTTCTT 57.555 29.630 0.00 0.00 42.67 2.52
724 726 9.125026 ACGATAGCCTTCTTCATCATAATTTTT 57.875 29.630 0.00 0.00 42.67 1.94
761 763 8.756864 GGTATCTTCGATAGTTTTTCAGCTAAG 58.243 37.037 0.00 0.00 37.40 2.18
769 771 8.006590 CGATAGTTTTTCAGCTAAGTATGATGC 58.993 37.037 0.04 0.00 0.00 3.91
776 778 7.719778 TTCAGCTAAGTATGATGCATTAGTG 57.280 36.000 0.00 0.62 0.00 2.74
804 806 6.922389 GTGTTGCAAAAGAACACTTCATAAC 58.078 36.000 10.65 0.00 46.42 1.89
813 815 3.434940 ACACTTCATAACCCCCTTGTC 57.565 47.619 0.00 0.00 0.00 3.18
826 828 3.118555 CCCCCTTGTCGTTACATATGTCA 60.119 47.826 12.68 0.00 34.97 3.58
827 829 4.444306 CCCCCTTGTCGTTACATATGTCAT 60.444 45.833 12.68 0.00 34.97 3.06
831 833 6.456853 CCCTTGTCGTTACATATGTCATTGTG 60.457 42.308 12.68 0.00 34.97 3.33
885 887 8.749026 TTTAATATGGATTGGCAAAAATGCAT 57.251 26.923 3.01 7.78 46.45 3.96
892 894 7.164122 TGGATTGGCAAAAATGCATTTAAGTA 58.836 30.769 24.35 9.11 33.53 2.24
894 896 8.676401 GGATTGGCAAAAATGCATTTAAGTAAT 58.324 29.630 24.35 18.86 36.33 1.89
895 897 9.493206 GATTGGCAAAAATGCATTTAAGTAATG 57.507 29.630 24.35 16.06 45.30 1.90
896 898 8.613060 TTGGCAAAAATGCATTTAAGTAATGA 57.387 26.923 24.35 5.25 45.35 2.57
897 899 8.027440 TGGCAAAAATGCATTTAAGTAATGAC 57.973 30.769 24.35 17.33 45.35 3.06
899 901 7.118971 GGCAAAAATGCATTTAAGTAATGACCA 59.881 33.333 24.35 0.00 45.35 4.02
900 902 8.170553 GCAAAAATGCATTTAAGTAATGACCAG 58.829 33.333 24.35 4.52 45.35 4.00
914 916 5.495926 AATGACCAGAGATTCTCACAAGT 57.504 39.130 15.83 6.97 32.06 3.16
917 919 4.529769 TGACCAGAGATTCTCACAAGTCAT 59.470 41.667 15.83 0.00 32.06 3.06
930 932 5.419542 TCACAAGTCATAAGCACATCTACC 58.580 41.667 0.00 0.00 0.00 3.18
937 939 1.453155 AAGCACATCTACCGCCAAAG 58.547 50.000 0.00 0.00 0.00 2.77
938 940 0.613260 AGCACATCTACCGCCAAAGA 59.387 50.000 0.00 0.00 0.00 2.52
939 941 0.727398 GCACATCTACCGCCAAAGAC 59.273 55.000 0.00 0.00 0.00 3.01
940 942 1.943968 GCACATCTACCGCCAAAGACA 60.944 52.381 0.00 0.00 0.00 3.41
941 943 2.632377 CACATCTACCGCCAAAGACAT 58.368 47.619 0.00 0.00 0.00 3.06
942 944 3.792401 CACATCTACCGCCAAAGACATA 58.208 45.455 0.00 0.00 0.00 2.29
984 986 4.261614 CCAAAAGTTCACTAGAAGCCAACC 60.262 45.833 0.00 0.00 33.63 3.77
985 987 3.857157 AAGTTCACTAGAAGCCAACCA 57.143 42.857 0.00 0.00 33.63 3.67
986 988 3.127425 AGTTCACTAGAAGCCAACCAC 57.873 47.619 0.00 0.00 33.63 4.16
987 989 2.438021 AGTTCACTAGAAGCCAACCACA 59.562 45.455 0.00 0.00 33.63 4.17
988 990 2.543777 TCACTAGAAGCCAACCACAC 57.456 50.000 0.00 0.00 0.00 3.82
989 991 1.765904 TCACTAGAAGCCAACCACACA 59.234 47.619 0.00 0.00 0.00 3.72
990 992 2.371841 TCACTAGAAGCCAACCACACAT 59.628 45.455 0.00 0.00 0.00 3.21
991 993 2.485426 CACTAGAAGCCAACCACACATG 59.515 50.000 0.00 0.00 0.00 3.21
992 994 2.106511 ACTAGAAGCCAACCACACATGT 59.893 45.455 0.00 0.00 0.00 3.21
993 995 1.609208 AGAAGCCAACCACACATGTC 58.391 50.000 0.00 0.00 0.00 3.06
1012 1014 9.797473 CACATGTCTATGTAGCATAAAATAACG 57.203 33.333 0.00 0.00 45.53 3.18
1014 1016 9.203421 CATGTCTATGTAGCATAAAATAACGGA 57.797 33.333 0.00 0.00 0.00 4.69
1051 1053 2.855953 GCTGCAAAGCATACATAAGCGG 60.856 50.000 0.00 0.00 38.13 5.52
1052 1054 1.065401 TGCAAAGCATACATAAGCGGC 59.935 47.619 0.00 0.00 31.71 6.53
1069 1071 4.481463 AGCGGCAACATAAACACAATTAC 58.519 39.130 1.45 0.00 0.00 1.89
1085 1087 6.535150 ACACAATTACACACTAATCGATCCAG 59.465 38.462 0.00 1.59 0.00 3.86
1086 1088 5.523916 ACAATTACACACTAATCGATCCAGC 59.476 40.000 0.00 0.00 0.00 4.85
1087 1089 2.209838 ACACACTAATCGATCCAGCG 57.790 50.000 0.00 0.00 0.00 5.18
1088 1090 0.855349 CACACTAATCGATCCAGCGC 59.145 55.000 0.00 0.00 0.00 5.92
1089 1091 0.459899 ACACTAATCGATCCAGCGCA 59.540 50.000 11.47 0.00 0.00 6.09
1090 1092 1.134818 ACACTAATCGATCCAGCGCAA 60.135 47.619 11.47 0.00 0.00 4.85
1091 1093 1.258982 CACTAATCGATCCAGCGCAAC 59.741 52.381 11.47 0.00 0.00 4.17
1092 1094 1.137086 ACTAATCGATCCAGCGCAACT 59.863 47.619 11.47 0.00 0.00 3.16
1244 1246 2.516923 GACAACGACATGGAGTACTCG 58.483 52.381 16.56 7.55 0.00 4.18
1247 1249 2.110901 ACGACATGGAGTACTCGTCT 57.889 50.000 20.30 9.88 0.00 4.18
1535 1537 2.687805 CGGCTCTTCGTCGTCCAGA 61.688 63.158 0.00 0.00 35.63 3.86
1544 1546 1.515304 GTCGTCCAGAAGCGAGCTC 60.515 63.158 2.73 2.73 37.82 4.09
1592 1594 1.227089 CTCCAAGGCCGAGATCGTG 60.227 63.158 0.00 0.00 37.74 4.35
1628 1630 1.233285 ACACCTACGACGACGAGCTT 61.233 55.000 15.32 0.00 42.66 3.74
1844 1885 0.457853 TCAATTTCGAGGACGGCGAG 60.458 55.000 16.62 0.00 39.14 5.03
1997 2041 1.153628 CGGGAATGACACGGAGGAC 60.154 63.158 0.00 0.00 42.25 3.85
2183 2227 0.246635 GCTCTTGGTCTTCTGCCGTA 59.753 55.000 0.00 0.00 0.00 4.02
2184 2228 1.997669 CTCTTGGTCTTCTGCCGTAC 58.002 55.000 0.00 0.00 0.00 3.67
2185 2229 1.546476 CTCTTGGTCTTCTGCCGTACT 59.454 52.381 0.00 0.00 0.00 2.73
2186 2230 2.753452 CTCTTGGTCTTCTGCCGTACTA 59.247 50.000 0.00 0.00 0.00 1.82
2260 2304 3.973206 TTCGGGAAGCAAGAATAGACA 57.027 42.857 0.00 0.00 0.00 3.41
2262 2306 4.487714 TCGGGAAGCAAGAATAGACAAT 57.512 40.909 0.00 0.00 0.00 2.71
2299 2343 4.514066 CACATCACATGATCACACCCATAG 59.486 45.833 0.00 0.00 31.21 2.23
2311 2357 7.510343 TGATCACACCCATAGAAGAAGATATCA 59.490 37.037 5.32 0.00 0.00 2.15
2343 2389 0.824109 CGGAGCAAGAGGACACCATA 59.176 55.000 0.00 0.00 0.00 2.74
2344 2390 1.414181 CGGAGCAAGAGGACACCATAT 59.586 52.381 0.00 0.00 0.00 1.78
2346 2392 2.486191 GGAGCAAGAGGACACCATATGG 60.486 54.545 20.68 20.68 42.17 2.74
2350 2396 3.041211 CAAGAGGACACCATATGGGAGA 58.959 50.000 25.55 0.00 41.15 3.71
2377 2435 5.868801 ACAATACCTTGCACATTTTGTATGC 59.131 36.000 0.00 0.00 39.88 3.14
2379 2437 2.899256 ACCTTGCACATTTTGTATGCCT 59.101 40.909 0.00 0.00 38.63 4.75
2382 2440 5.045215 CCTTGCACATTTTGTATGCCTATG 58.955 41.667 0.00 0.00 38.63 2.23
2423 2481 6.153924 AGATTCCACTATTCCAGAGGGTTAT 58.846 40.000 0.00 0.00 35.79 1.89
2431 2489 4.772886 TTCCAGAGGGTTATTAGAAGGC 57.227 45.455 0.00 0.00 34.93 4.35
2438 2496 5.601313 AGAGGGTTATTAGAAGGCGACAATA 59.399 40.000 0.00 0.00 0.00 1.90
2455 2513 6.678245 GCGACAATACTTTGCATAATTTTTGC 59.322 34.615 5.04 5.04 40.55 3.68
2457 2515 7.201308 CGACAATACTTTGCATAATTTTTGCGA 60.201 33.333 7.22 2.99 43.10 5.10
2458 2516 8.477984 ACAATACTTTGCATAATTTTTGCGAT 57.522 26.923 7.22 0.00 43.10 4.58
2466 2524 9.531942 TTTGCATAATTTTTGCGATGATCTTAT 57.468 25.926 7.22 0.00 43.10 1.73
2476 2534 9.667989 TTTTGCGATGATCTTATTGAATATGTG 57.332 29.630 0.00 0.00 0.00 3.21
2491 2549 9.975218 ATTGAATATGTGGTTACCTTTAGTTCT 57.025 29.630 2.07 0.00 0.00 3.01
2501 2559 7.447238 TGGTTACCTTTAGTTCTCCAAATCTTG 59.553 37.037 2.07 0.00 0.00 3.02
2539 2601 7.712639 TGATTGTTGTGCAGCCTTTAATTTTTA 59.287 29.630 0.00 0.00 0.00 1.52
2542 2604 9.547753 TTGTTGTGCAGCCTTTAATTTTTATTA 57.452 25.926 0.00 0.00 0.00 0.98
2572 2634 5.220710 AGATCGATCTTTACCATTCCCAG 57.779 43.478 22.32 0.00 31.97 4.45
2573 2635 4.656112 AGATCGATCTTTACCATTCCCAGT 59.344 41.667 22.32 0.00 31.97 4.00
2574 2636 4.137116 TCGATCTTTACCATTCCCAGTG 57.863 45.455 0.00 0.00 0.00 3.66
2575 2637 2.614057 CGATCTTTACCATTCCCAGTGC 59.386 50.000 0.00 0.00 0.00 4.40
2576 2638 3.682718 CGATCTTTACCATTCCCAGTGCT 60.683 47.826 0.00 0.00 0.00 4.40
2577 2639 3.806949 TCTTTACCATTCCCAGTGCTT 57.193 42.857 0.00 0.00 0.00 3.91
2578 2640 3.686016 TCTTTACCATTCCCAGTGCTTC 58.314 45.455 0.00 0.00 0.00 3.86
2579 2641 3.073798 TCTTTACCATTCCCAGTGCTTCA 59.926 43.478 0.00 0.00 0.00 3.02
2580 2642 3.737559 TTACCATTCCCAGTGCTTCAT 57.262 42.857 0.00 0.00 0.00 2.57
2581 2643 2.134789 ACCATTCCCAGTGCTTCATC 57.865 50.000 0.00 0.00 0.00 2.92
2582 2644 1.019673 CCATTCCCAGTGCTTCATCG 58.980 55.000 0.00 0.00 0.00 3.84
2583 2645 1.407299 CCATTCCCAGTGCTTCATCGA 60.407 52.381 0.00 0.00 0.00 3.59
2584 2646 2.569059 CATTCCCAGTGCTTCATCGAT 58.431 47.619 0.00 0.00 0.00 3.59
2585 2647 2.787473 TTCCCAGTGCTTCATCGATT 57.213 45.000 0.00 0.00 0.00 3.34
2586 2648 2.787473 TCCCAGTGCTTCATCGATTT 57.213 45.000 0.00 0.00 0.00 2.17
2587 2649 3.071874 TCCCAGTGCTTCATCGATTTT 57.928 42.857 0.00 0.00 0.00 1.82
2588 2650 3.420893 TCCCAGTGCTTCATCGATTTTT 58.579 40.909 0.00 0.00 0.00 1.94
2613 2675 3.276857 CCAATTCAGTGATGCTAGTGCT 58.723 45.455 0.00 0.00 40.48 4.40
2616 2678 4.743057 ATTCAGTGATGCTAGTGCTGTA 57.257 40.909 0.00 0.00 40.48 2.74
2620 2682 2.428890 AGTGATGCTAGTGCTGTAGGAC 59.571 50.000 0.00 0.00 40.48 3.85
2627 2689 5.691896 TGCTAGTGCTGTAGGACTATCTTA 58.308 41.667 12.68 0.00 45.63 2.10
2631 2693 5.511363 AGTGCTGTAGGACTATCTTACACT 58.489 41.667 4.11 0.00 45.07 3.55
2637 2699 7.228906 GCTGTAGGACTATCTTACACTATCACA 59.771 40.741 0.00 0.00 34.60 3.58
2652 2714 5.461407 CACTATCACATTGATTCAGGAGTCG 59.539 44.000 0.00 0.00 38.26 4.18
2654 2716 2.234661 TCACATTGATTCAGGAGTCGCT 59.765 45.455 0.00 0.00 0.00 4.93
2715 2777 2.626840 GCTGTAGAGCCTTTTCTCAGG 58.373 52.381 0.00 0.00 39.57 3.86
2720 2782 4.532126 TGTAGAGCCTTTTCTCAGGAATGA 59.468 41.667 0.00 0.00 35.71 2.57
2723 2785 5.578073 AGAGCCTTTTCTCAGGAATGAATT 58.422 37.500 0.00 0.00 35.71 2.17
2725 2787 7.177878 AGAGCCTTTTCTCAGGAATGAATTTA 58.822 34.615 0.00 0.00 35.71 1.40
2815 2998 7.741027 ATCTATTGGTAATCTGCATGAACTG 57.259 36.000 0.00 0.00 0.00 3.16
2829 3012 1.006571 AACTGGTACACACGCCGAG 60.007 57.895 0.00 0.00 0.00 4.63
2830 3013 2.126071 CTGGTACACACGCCGAGG 60.126 66.667 0.00 0.00 0.00 4.63
2831 3014 2.913578 TGGTACACACGCCGAGGT 60.914 61.111 0.00 0.00 0.00 3.85
2832 3015 2.431942 GGTACACACGCCGAGGTG 60.432 66.667 11.01 11.01 43.54 4.00
2833 3016 3.110178 GTACACACGCCGAGGTGC 61.110 66.667 12.17 0.00 41.65 5.01
2834 3017 3.299977 TACACACGCCGAGGTGCT 61.300 61.111 12.17 4.57 41.65 4.40
2835 3018 3.277211 TACACACGCCGAGGTGCTC 62.277 63.158 12.17 0.00 41.65 4.26
2840 3023 4.473520 CGCCGAGGTGCTCCCATT 62.474 66.667 0.00 0.00 34.66 3.16
2841 3024 2.044946 GCCGAGGTGCTCCCATTT 60.045 61.111 0.00 0.00 34.66 2.32
2842 3025 1.678970 GCCGAGGTGCTCCCATTTT 60.679 57.895 0.00 0.00 34.66 1.82
2843 3026 1.657751 GCCGAGGTGCTCCCATTTTC 61.658 60.000 0.00 0.00 34.66 2.29
2844 3027 1.369091 CCGAGGTGCTCCCATTTTCG 61.369 60.000 0.00 3.89 34.66 3.46
2845 3028 0.391130 CGAGGTGCTCCCATTTTCGA 60.391 55.000 7.42 0.00 34.66 3.71
2846 3029 1.087501 GAGGTGCTCCCATTTTCGAC 58.912 55.000 0.00 0.00 34.66 4.20
2847 3030 0.693049 AGGTGCTCCCATTTTCGACT 59.307 50.000 0.00 0.00 34.66 4.18
2927 3110 1.549203 ACCTCAACATGTGGAATGCC 58.451 50.000 4.07 0.00 34.79 4.40
2996 3180 6.806388 AAACAAATTTCAAATGAGATGGGC 57.194 33.333 0.00 0.00 0.00 5.36
2997 3181 5.486735 ACAAATTTCAAATGAGATGGGCA 57.513 34.783 0.00 0.00 0.00 5.36
3005 3189 2.653234 ATGAGATGGGCATCAAGGTC 57.347 50.000 0.00 0.00 40.22 3.85
3015 3199 2.422519 GGCATCAAGGTCATGGATCAGT 60.423 50.000 0.00 0.00 0.00 3.41
3027 3211 6.425114 GGTCATGGATCAGTATGTGTATTGTC 59.575 42.308 0.00 0.00 37.40 3.18
3029 3213 7.495606 GTCATGGATCAGTATGTGTATTGTCAA 59.504 37.037 0.00 0.00 37.40 3.18
3056 3240 4.574892 TCTGCCGATGTTTGTCTAAATGA 58.425 39.130 0.00 0.00 0.00 2.57
3061 3245 5.419542 CCGATGTTTGTCTAAATGAGGAGA 58.580 41.667 0.00 0.00 0.00 3.71
3069 3253 7.437713 TTGTCTAAATGAGGAGATACATGGT 57.562 36.000 0.00 0.00 0.00 3.55
3072 3256 6.642950 GTCTAAATGAGGAGATACATGGTTCG 59.357 42.308 0.00 0.00 0.00 3.95
3078 3262 5.104941 TGAGGAGATACATGGTTCGTTCATT 60.105 40.000 0.00 0.00 0.00 2.57
3084 3268 7.726216 AGATACATGGTTCGTTCATTATCTCA 58.274 34.615 0.00 0.00 29.60 3.27
3094 3278 9.358123 GTTCGTTCATTATCTCAATGTATTTCG 57.642 33.333 0.00 0.00 0.00 3.46
3095 3279 8.642908 TCGTTCATTATCTCAATGTATTTCGT 57.357 30.769 0.00 0.00 0.00 3.85
3132 3316 2.029110 ACAATTGGATGGGAAAACTGCG 60.029 45.455 10.83 0.00 0.00 5.18
3139 3323 2.286365 TGGGAAAACTGCGGAGAATT 57.714 45.000 12.26 4.68 0.00 2.17
3151 3335 3.260884 TGCGGAGAATTAGAAGGTTGTCT 59.739 43.478 0.00 0.00 0.00 3.41
3170 3354 5.940603 GTCTTAGTGACATCATCTTGACG 57.059 43.478 0.00 0.00 44.73 4.35
3179 3363 3.817084 ACATCATCTTGACGCCATTATGG 59.183 43.478 6.92 6.92 41.55 2.74
3198 3382 4.829064 TGGCAGCGTTATGGAAATATTC 57.171 40.909 0.00 0.00 0.00 1.75
3206 3390 8.757789 CAGCGTTATGGAAATATTCGTAACTTA 58.242 33.333 13.34 0.00 33.22 2.24
3208 3392 9.577003 GCGTTATGGAAATATTCGTAACTTAAG 57.423 33.333 0.00 0.00 33.22 1.85
3228 3414 8.682710 ACTTAAGTGAAATTGCAAAGTTGTAGA 58.317 29.630 7.48 0.00 32.38 2.59
3229 3415 9.173939 CTTAAGTGAAATTGCAAAGTTGTAGAG 57.826 33.333 1.71 0.00 32.38 2.43
3230 3416 6.076981 AGTGAAATTGCAAAGTTGTAGAGG 57.923 37.500 1.71 0.00 32.38 3.69
3236 3422 9.129209 GAAATTGCAAAGTTGTAGAGGTTAATC 57.871 33.333 1.71 0.00 32.38 1.75
3241 3427 6.620089 GCAAAGTTGTAGAGGTTAATCGGAAC 60.620 42.308 0.00 0.00 0.00 3.62
3245 3431 8.075761 AGTTGTAGAGGTTAATCGGAACTAAT 57.924 34.615 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.515502 TGGGTCATCTGAGTTACTTGAGG 59.484 47.826 0.00 0.00 0.00 3.86
4 5 4.021104 TGTGGGTCATCTGAGTTACTTGAG 60.021 45.833 0.00 0.00 0.00 3.02
5 6 3.901222 TGTGGGTCATCTGAGTTACTTGA 59.099 43.478 0.00 0.00 0.00 3.02
6 7 3.997021 GTGTGGGTCATCTGAGTTACTTG 59.003 47.826 0.00 0.00 0.00 3.16
7 8 3.904339 AGTGTGGGTCATCTGAGTTACTT 59.096 43.478 0.00 0.00 0.00 2.24
8 9 3.259374 CAGTGTGGGTCATCTGAGTTACT 59.741 47.826 0.00 0.00 31.65 2.24
9 10 3.258372 TCAGTGTGGGTCATCTGAGTTAC 59.742 47.826 0.00 0.00 33.11 2.50
10 11 3.506398 TCAGTGTGGGTCATCTGAGTTA 58.494 45.455 0.00 0.00 33.11 2.24
11 12 2.329267 TCAGTGTGGGTCATCTGAGTT 58.671 47.619 0.00 0.00 33.11 3.01
12 13 2.015456 TCAGTGTGGGTCATCTGAGT 57.985 50.000 0.00 0.00 33.11 3.41
13 14 2.235650 ACATCAGTGTGGGTCATCTGAG 59.764 50.000 0.00 0.00 37.49 3.35
14 15 2.259917 ACATCAGTGTGGGTCATCTGA 58.740 47.619 0.00 0.00 37.14 3.27
15 16 2.775911 ACATCAGTGTGGGTCATCTG 57.224 50.000 0.00 0.00 37.14 2.90
34 35 3.764434 GGTCTCCTAACTGTGAGATGTCA 59.236 47.826 0.00 0.00 39.63 3.58
35 36 3.764434 TGGTCTCCTAACTGTGAGATGTC 59.236 47.826 0.00 0.00 39.63 3.06
36 37 3.779444 TGGTCTCCTAACTGTGAGATGT 58.221 45.455 0.00 0.00 39.63 3.06
37 38 4.161189 ACATGGTCTCCTAACTGTGAGATG 59.839 45.833 0.00 0.00 39.63 2.90
38 39 4.357325 ACATGGTCTCCTAACTGTGAGAT 58.643 43.478 0.00 0.00 39.63 2.75
39 40 3.779444 ACATGGTCTCCTAACTGTGAGA 58.221 45.455 0.00 0.00 35.33 3.27
40 41 4.543590 AACATGGTCTCCTAACTGTGAG 57.456 45.455 0.00 0.00 0.00 3.51
41 42 6.620877 AATAACATGGTCTCCTAACTGTGA 57.379 37.500 0.00 0.00 0.00 3.58
42 43 8.964476 AATAATAACATGGTCTCCTAACTGTG 57.036 34.615 0.00 0.00 0.00 3.66
43 44 9.396022 CAAATAATAACATGGTCTCCTAACTGT 57.604 33.333 0.00 0.00 0.00 3.55
44 45 9.613428 TCAAATAATAACATGGTCTCCTAACTG 57.387 33.333 0.00 0.00 0.00 3.16
49 50 9.753674 TTTCTTCAAATAATAACATGGTCTCCT 57.246 29.630 0.00 0.00 0.00 3.69
73 74 9.807649 GGCTCACAAACTATGATCAATATTTTT 57.192 29.630 0.00 0.00 0.00 1.94
74 75 9.193806 AGGCTCACAAACTATGATCAATATTTT 57.806 29.630 0.00 0.00 0.00 1.82
75 76 8.757982 AGGCTCACAAACTATGATCAATATTT 57.242 30.769 0.00 0.00 0.00 1.40
78 79 9.929180 GTATAGGCTCACAAACTATGATCAATA 57.071 33.333 0.00 0.00 0.00 1.90
79 80 8.432013 TGTATAGGCTCACAAACTATGATCAAT 58.568 33.333 0.00 0.00 0.00 2.57
80 81 7.791029 TGTATAGGCTCACAAACTATGATCAA 58.209 34.615 0.00 0.00 0.00 2.57
81 82 7.360113 TGTATAGGCTCACAAACTATGATCA 57.640 36.000 0.00 0.00 0.00 2.92
84 85 9.710900 CAATATGTATAGGCTCACAAACTATGA 57.289 33.333 6.02 0.00 0.00 2.15
85 86 8.446273 GCAATATGTATAGGCTCACAAACTATG 58.554 37.037 6.02 3.82 0.00 2.23
86 87 8.378565 AGCAATATGTATAGGCTCACAAACTAT 58.621 33.333 6.02 0.00 0.00 2.12
87 88 7.735917 AGCAATATGTATAGGCTCACAAACTA 58.264 34.615 6.02 0.00 0.00 2.24
88 89 6.595682 AGCAATATGTATAGGCTCACAAACT 58.404 36.000 6.02 0.00 0.00 2.66
89 90 6.867662 AGCAATATGTATAGGCTCACAAAC 57.132 37.500 6.02 0.00 0.00 2.93
90 91 6.828273 ACAAGCAATATGTATAGGCTCACAAA 59.172 34.615 6.02 0.00 32.84 2.83
91 92 6.356556 ACAAGCAATATGTATAGGCTCACAA 58.643 36.000 6.02 0.00 32.84 3.33
92 93 5.928976 ACAAGCAATATGTATAGGCTCACA 58.071 37.500 4.53 4.53 32.84 3.58
93 94 6.708054 AGAACAAGCAATATGTATAGGCTCAC 59.292 38.462 0.00 0.00 32.84 3.51
94 95 6.830912 AGAACAAGCAATATGTATAGGCTCA 58.169 36.000 0.00 0.00 32.84 4.26
95 96 7.158021 AGAGAACAAGCAATATGTATAGGCTC 58.842 38.462 0.00 0.00 32.84 4.70
96 97 7.016072 AGAGAGAACAAGCAATATGTATAGGCT 59.984 37.037 0.00 0.00 36.13 4.58
97 98 7.158021 AGAGAGAACAAGCAATATGTATAGGC 58.842 38.462 0.00 0.00 0.00 3.93
98 99 8.584157 AGAGAGAGAACAAGCAATATGTATAGG 58.416 37.037 0.00 0.00 0.00 2.57
135 136 4.009002 GGTAGGTATTGCACGGGTAAAAA 58.991 43.478 0.00 0.00 0.00 1.94
136 137 3.008813 TGGTAGGTATTGCACGGGTAAAA 59.991 43.478 0.00 0.00 0.00 1.52
137 138 2.570752 TGGTAGGTATTGCACGGGTAAA 59.429 45.455 0.00 0.00 0.00 2.01
138 139 2.093553 GTGGTAGGTATTGCACGGGTAA 60.094 50.000 0.00 0.00 0.00 2.85
139 140 1.481772 GTGGTAGGTATTGCACGGGTA 59.518 52.381 0.00 0.00 0.00 3.69
140 141 0.251073 GTGGTAGGTATTGCACGGGT 59.749 55.000 0.00 0.00 0.00 5.28
141 142 0.250793 TGTGGTAGGTATTGCACGGG 59.749 55.000 0.00 0.00 0.00 5.28
142 143 1.735571 GTTGTGGTAGGTATTGCACGG 59.264 52.381 0.00 0.00 0.00 4.94
143 144 1.735571 GGTTGTGGTAGGTATTGCACG 59.264 52.381 0.00 0.00 0.00 5.34
144 145 2.785562 TGGTTGTGGTAGGTATTGCAC 58.214 47.619 0.00 0.00 0.00 4.57
145 146 3.510531 TTGGTTGTGGTAGGTATTGCA 57.489 42.857 0.00 0.00 0.00 4.08
146 147 3.428862 GCATTGGTTGTGGTAGGTATTGC 60.429 47.826 0.00 0.00 0.00 3.56
147 148 4.016444 AGCATTGGTTGTGGTAGGTATTG 58.984 43.478 0.00 0.00 0.00 1.90
148 149 4.316025 AGCATTGGTTGTGGTAGGTATT 57.684 40.909 0.00 0.00 0.00 1.89
149 150 4.016444 CAAGCATTGGTTGTGGTAGGTAT 58.984 43.478 18.20 0.00 43.94 2.73
150 151 3.417101 CAAGCATTGGTTGTGGTAGGTA 58.583 45.455 18.20 0.00 43.94 3.08
151 152 2.238521 CAAGCATTGGTTGTGGTAGGT 58.761 47.619 18.20 0.00 43.94 3.08
152 153 3.129287 GATCAAGCATTGGTTGTGGTAGG 59.871 47.826 23.63 1.74 41.37 3.18
153 154 3.129287 GGATCAAGCATTGGTTGTGGTAG 59.871 47.826 23.63 2.39 41.37 3.18
154 155 3.088532 GGATCAAGCATTGGTTGTGGTA 58.911 45.455 23.63 8.86 41.37 3.25
155 156 1.895131 GGATCAAGCATTGGTTGTGGT 59.105 47.619 23.63 13.59 41.37 4.16
156 157 1.205417 GGGATCAAGCATTGGTTGTGG 59.795 52.381 23.63 3.70 41.37 4.17
157 158 2.173519 AGGGATCAAGCATTGGTTGTG 58.826 47.619 23.63 5.03 41.37 3.33
158 159 2.610438 AGGGATCAAGCATTGGTTGT 57.390 45.000 23.63 13.71 41.37 3.32
159 160 3.382546 CCTTAGGGATCAAGCATTGGTTG 59.617 47.826 19.93 19.93 41.37 3.77
160 161 3.269381 TCCTTAGGGATCAAGCATTGGTT 59.731 43.478 0.00 0.00 41.37 3.67
161 162 2.852449 TCCTTAGGGATCAAGCATTGGT 59.148 45.455 0.00 0.00 46.21 3.67
162 163 3.582998 TCCTTAGGGATCAAGCATTGG 57.417 47.619 0.00 0.00 41.01 3.16
163 164 5.920193 TTTTCCTTAGGGATCAAGCATTG 57.080 39.130 0.00 0.00 41.97 2.82
164 165 5.779771 TGTTTTTCCTTAGGGATCAAGCATT 59.220 36.000 0.00 0.00 41.87 3.56
165 166 5.332743 TGTTTTTCCTTAGGGATCAAGCAT 58.667 37.500 0.00 0.00 41.87 3.79
166 167 4.735369 TGTTTTTCCTTAGGGATCAAGCA 58.265 39.130 0.00 0.00 41.87 3.91
167 168 5.470368 GTTGTTTTTCCTTAGGGATCAAGC 58.530 41.667 0.00 0.00 41.87 4.01
168 169 5.047306 GGGTTGTTTTTCCTTAGGGATCAAG 60.047 44.000 0.00 0.00 41.87 3.02
169 170 4.836175 GGGTTGTTTTTCCTTAGGGATCAA 59.164 41.667 0.00 0.00 41.87 2.57
170 171 4.140900 TGGGTTGTTTTTCCTTAGGGATCA 60.141 41.667 0.00 0.00 41.87 2.92
171 172 4.412843 TGGGTTGTTTTTCCTTAGGGATC 58.587 43.478 0.00 0.00 41.87 3.36
172 173 4.479156 TGGGTTGTTTTTCCTTAGGGAT 57.521 40.909 0.00 0.00 41.87 3.85
173 174 3.975479 TGGGTTGTTTTTCCTTAGGGA 57.025 42.857 0.00 0.00 40.36 4.20
174 175 9.649316 TTATATATGGGTTGTTTTTCCTTAGGG 57.351 33.333 0.00 0.00 0.00 3.53
179 180 9.936329 AGACATTATATATGGGTTGTTTTTCCT 57.064 29.630 0.00 0.00 0.00 3.36
187 188 7.689299 TCTGGGAAGACATTATATATGGGTTG 58.311 38.462 0.00 0.00 0.00 3.77
221 223 7.394923 TGTTTTGGTACTCTTAACATATTGGGG 59.605 37.037 0.00 0.00 0.00 4.96
222 224 8.343168 TGTTTTGGTACTCTTAACATATTGGG 57.657 34.615 0.00 0.00 0.00 4.12
228 230 9.802039 TTAGGATTGTTTTGGTACTCTTAACAT 57.198 29.630 0.00 0.00 0.00 2.71
234 236 9.503399 CTAACTTTAGGATTGTTTTGGTACTCT 57.497 33.333 0.00 0.00 0.00 3.24
235 237 9.498176 TCTAACTTTAGGATTGTTTTGGTACTC 57.502 33.333 0.00 0.00 0.00 2.59
257 259 9.730705 ATGTCTCTGTCTTGAAAATCAATCTAA 57.269 29.630 0.00 0.00 35.59 2.10
275 277 3.126831 GGGTAAGCGATGAATGTCTCTG 58.873 50.000 0.00 0.00 0.00 3.35
276 278 3.034635 AGGGTAAGCGATGAATGTCTCT 58.965 45.455 0.00 0.00 0.00 3.10
279 281 2.906354 ACAGGGTAAGCGATGAATGTC 58.094 47.619 0.00 0.00 0.00 3.06
290 292 5.183228 CCACCACATAAGTAACAGGGTAAG 58.817 45.833 0.00 0.00 0.00 2.34
298 300 5.307204 TGTTACCACCACCACATAAGTAAC 58.693 41.667 0.00 0.00 38.86 2.50
316 318 5.121298 GGAGGACGATAAGTTTGGTTGTTAC 59.879 44.000 0.00 0.00 0.00 2.50
317 319 5.240121 GGAGGACGATAAGTTTGGTTGTTA 58.760 41.667 0.00 0.00 0.00 2.41
318 320 4.070009 GGAGGACGATAAGTTTGGTTGTT 58.930 43.478 0.00 0.00 0.00 2.83
319 321 3.558533 GGGAGGACGATAAGTTTGGTTGT 60.559 47.826 0.00 0.00 0.00 3.32
320 322 3.007635 GGGAGGACGATAAGTTTGGTTG 58.992 50.000 0.00 0.00 0.00 3.77
371 373 8.593679 TCTCAACATACTCAGAAACCTATGAAA 58.406 33.333 0.00 0.00 0.00 2.69
382 384 4.824479 TTGCCATCTCAACATACTCAGA 57.176 40.909 0.00 0.00 0.00 3.27
391 393 3.988379 TGACTTGTTTGCCATCTCAAC 57.012 42.857 0.00 0.00 0.00 3.18
404 406 3.191888 AGAGGAGGGTACATGACTTGT 57.808 47.619 0.00 0.00 42.62 3.16
405 407 4.895889 TCATAGAGGAGGGTACATGACTTG 59.104 45.833 0.00 0.00 0.00 3.16
406 408 4.896482 GTCATAGAGGAGGGTACATGACTT 59.104 45.833 0.00 0.00 39.29 3.01
411 413 2.177233 ACGGTCATAGAGGAGGGTACAT 59.823 50.000 0.00 0.00 0.00 2.29
418 420 1.478510 AGTTGCACGGTCATAGAGGAG 59.521 52.381 0.00 0.00 0.00 3.69
419 421 1.557099 AGTTGCACGGTCATAGAGGA 58.443 50.000 0.00 0.00 0.00 3.71
428 430 1.459450 AGTTGTTCAAGTTGCACGGT 58.541 45.000 0.00 0.00 0.00 4.83
429 431 2.612212 AGTAGTTGTTCAAGTTGCACGG 59.388 45.455 0.00 0.00 0.00 4.94
430 432 3.303132 GGAGTAGTTGTTCAAGTTGCACG 60.303 47.826 0.00 0.00 0.00 5.34
450 452 2.166459 CAGACTAGTCGGCATTCAAGGA 59.834 50.000 17.07 0.00 34.09 3.36
455 457 2.941453 TGACAGACTAGTCGGCATTC 57.059 50.000 21.11 12.69 41.41 2.67
462 464 6.625362 TGACAAGAATGATGACAGACTAGTC 58.375 40.000 15.41 15.41 38.99 2.59
469 471 8.860128 CAAAAATCATGACAAGAATGATGACAG 58.140 33.333 0.00 0.00 42.58 3.51
479 481 8.708742 CGAGTAACTACAAAAATCATGACAAGA 58.291 33.333 0.00 0.00 0.00 3.02
484 486 5.062934 CGCCGAGTAACTACAAAAATCATGA 59.937 40.000 0.00 0.00 0.00 3.07
487 489 4.558178 TCGCCGAGTAACTACAAAAATCA 58.442 39.130 0.00 0.00 0.00 2.57
521 523 8.798975 TTCTTGGATGACTAGGAAATATAGGT 57.201 34.615 0.00 0.00 0.00 3.08
555 557 7.911651 AGATGATTCTTAGTGGAAACTCAGAA 58.088 34.615 5.28 5.28 35.32 3.02
557 559 9.092876 GTTAGATGATTCTTAGTGGAAACTCAG 57.907 37.037 0.00 0.00 33.17 3.35
581 583 0.613853 TGTAGCCTGGCGTCTAGGTT 60.614 55.000 13.96 7.29 37.64 3.50
586 588 4.436998 GCGTGTAGCCTGGCGTCT 62.437 66.667 13.96 0.00 40.81 4.18
596 598 8.837059 GTCAAATTTTATTGTAGTTGCGTGTAG 58.163 33.333 0.00 0.00 0.00 2.74
601 603 7.060633 GTCTGGTCAAATTTTATTGTAGTTGCG 59.939 37.037 0.00 0.00 0.00 4.85
602 604 7.060633 CGTCTGGTCAAATTTTATTGTAGTTGC 59.939 37.037 0.00 0.00 0.00 4.17
639 641 8.950210 TCTGGAAATTGTTATCTCTCAATCAAC 58.050 33.333 0.00 0.00 33.86 3.18
640 642 9.170734 CTCTGGAAATTGTTATCTCTCAATCAA 57.829 33.333 0.00 0.00 33.86 2.57
731 733 8.704234 GCTGAAAAACTATCGAAGATACCTATG 58.296 37.037 0.00 0.00 45.12 2.23
740 742 9.302345 TCATACTTAGCTGAAAAACTATCGAAG 57.698 33.333 0.00 0.00 0.00 3.79
743 745 8.006590 GCATCATACTTAGCTGAAAAACTATCG 58.993 37.037 0.00 0.00 0.00 2.92
744 746 8.830580 TGCATCATACTTAGCTGAAAAACTATC 58.169 33.333 0.00 0.00 0.00 2.08
745 747 8.737168 TGCATCATACTTAGCTGAAAAACTAT 57.263 30.769 0.00 0.00 0.00 2.12
746 748 8.737168 ATGCATCATACTTAGCTGAAAAACTA 57.263 30.769 0.00 0.00 0.00 2.24
747 749 7.636150 ATGCATCATACTTAGCTGAAAAACT 57.364 32.000 0.00 0.00 0.00 2.66
748 750 9.443283 CTAATGCATCATACTTAGCTGAAAAAC 57.557 33.333 0.00 0.00 0.00 2.43
749 751 9.177608 ACTAATGCATCATACTTAGCTGAAAAA 57.822 29.630 0.00 0.00 0.00 1.94
769 771 0.595588 TTGCAACACGGGCACTAATG 59.404 50.000 0.00 0.00 41.75 1.90
776 778 0.179124 TGTTCTTTTGCAACACGGGC 60.179 50.000 0.00 0.00 0.00 6.13
777 779 1.555477 GTGTTCTTTTGCAACACGGG 58.445 50.000 0.00 0.00 43.07 5.28
797 799 3.327172 TGTAACGACAAGGGGGTTATGAA 59.673 43.478 0.00 0.00 30.68 2.57
802 804 3.264964 ACATATGTAACGACAAGGGGGTT 59.735 43.478 6.56 0.00 39.59 4.11
804 806 3.118555 TGACATATGTAACGACAAGGGGG 60.119 47.826 8.71 0.00 39.59 5.40
813 815 4.201676 ACACGCACAATGACATATGTAACG 60.202 41.667 8.71 3.51 35.59 3.18
826 828 6.934083 TCCATGAATATATGTACACGCACAAT 59.066 34.615 0.00 0.00 30.84 2.71
827 829 6.201997 GTCCATGAATATATGTACACGCACAA 59.798 38.462 0.00 0.00 30.84 3.33
831 833 6.779115 TTGTCCATGAATATATGTACACGC 57.221 37.500 0.00 0.00 28.36 5.34
872 874 7.118971 GGTCATTACTTAAATGCATTTTTGCCA 59.881 33.333 28.45 8.69 44.03 4.92
880 882 8.757982 AATCTCTGGTCATTACTTAAATGCAT 57.242 30.769 0.00 0.00 44.03 3.96
885 887 8.593679 TGTGAGAATCTCTGGTCATTACTTAAA 58.406 33.333 11.92 0.00 34.92 1.52
892 894 5.012458 TGACTTGTGAGAATCTCTGGTCATT 59.988 40.000 11.92 0.00 36.63 2.57
894 896 3.897505 TGACTTGTGAGAATCTCTGGTCA 59.102 43.478 11.92 15.04 37.90 4.02
895 897 4.527509 TGACTTGTGAGAATCTCTGGTC 57.472 45.455 11.92 13.03 34.92 4.02
896 898 6.611613 TTATGACTTGTGAGAATCTCTGGT 57.388 37.500 11.92 5.01 34.92 4.00
897 899 5.523188 GCTTATGACTTGTGAGAATCTCTGG 59.477 44.000 11.92 2.01 34.92 3.86
899 901 6.105333 GTGCTTATGACTTGTGAGAATCTCT 58.895 40.000 11.92 0.00 34.92 3.10
900 902 5.871524 TGTGCTTATGACTTGTGAGAATCTC 59.128 40.000 2.75 2.75 34.92 2.75
914 916 1.760029 TGGCGGTAGATGTGCTTATGA 59.240 47.619 0.00 0.00 0.00 2.15
917 919 2.235155 TCTTTGGCGGTAGATGTGCTTA 59.765 45.455 0.00 0.00 0.00 3.09
930 932 5.971202 GGTTGTCATTATTATGTCTTTGGCG 59.029 40.000 0.00 0.00 33.34 5.69
937 939 6.204882 GGCACTAGGGTTGTCATTATTATGTC 59.795 42.308 0.00 0.00 33.34 3.06
938 940 6.062095 GGCACTAGGGTTGTCATTATTATGT 58.938 40.000 0.00 0.00 33.34 2.29
939 941 6.061441 TGGCACTAGGGTTGTCATTATTATG 58.939 40.000 0.00 0.00 0.00 1.90
940 942 6.260700 TGGCACTAGGGTTGTCATTATTAT 57.739 37.500 0.00 0.00 0.00 1.28
941 943 5.702065 TGGCACTAGGGTTGTCATTATTA 57.298 39.130 0.00 0.00 0.00 0.98
942 944 4.584638 TGGCACTAGGGTTGTCATTATT 57.415 40.909 0.00 0.00 0.00 1.40
986 988 9.797473 CGTTATTTTATGCTACATAGACATGTG 57.203 33.333 1.15 0.00 45.17 3.21
988 990 9.203421 TCCGTTATTTTATGCTACATAGACATG 57.797 33.333 0.00 0.00 38.21 3.21
989 991 9.944376 ATCCGTTATTTTATGCTACATAGACAT 57.056 29.630 0.00 0.00 0.00 3.06
990 992 9.772973 AATCCGTTATTTTATGCTACATAGACA 57.227 29.630 0.00 0.00 0.00 3.41
1035 1037 2.752354 TGTTGCCGCTTATGTATGCTTT 59.248 40.909 0.00 0.00 0.00 3.51
1051 1053 8.789881 TTAGTGTGTAATTGTGTTTATGTTGC 57.210 30.769 0.00 0.00 0.00 4.17
1069 1071 0.855349 GCGCTGGATCGATTAGTGTG 59.145 55.000 19.04 10.25 0.00 3.82
1087 1089 1.833860 TTTTACACTTGCGCAGTTGC 58.166 45.000 11.31 0.00 30.92 4.17
1088 1090 3.182173 CCAATTTTACACTTGCGCAGTTG 59.818 43.478 11.31 14.47 30.92 3.16
1089 1091 3.067461 TCCAATTTTACACTTGCGCAGTT 59.933 39.130 11.31 0.00 30.92 3.16
1090 1092 2.621055 TCCAATTTTACACTTGCGCAGT 59.379 40.909 11.31 8.26 35.35 4.40
1091 1093 3.281341 TCCAATTTTACACTTGCGCAG 57.719 42.857 11.31 7.81 0.00 5.18
1092 1094 3.637432 CTTCCAATTTTACACTTGCGCA 58.363 40.909 5.66 5.66 0.00 6.09
1120 1122 7.391554 GTGTATATATTGAGATTGGTGCATGGT 59.608 37.037 0.00 0.00 0.00 3.55
1121 1123 7.391275 TGTGTATATATTGAGATTGGTGCATGG 59.609 37.037 0.00 0.00 0.00 3.66
1122 1124 8.326680 TGTGTATATATTGAGATTGGTGCATG 57.673 34.615 0.00 0.00 0.00 4.06
1123 1125 8.922931 TTGTGTATATATTGAGATTGGTGCAT 57.077 30.769 0.00 0.00 0.00 3.96
1200 1202 2.126888 CATGCCGTGGTTTGTCGC 60.127 61.111 0.00 0.00 0.00 5.19
1214 1216 0.038618 TGTCGTTGTCGTCCTCCATG 60.039 55.000 0.00 0.00 38.33 3.66
1523 1525 1.209383 CTCGCTTCTGGACGACGAA 59.791 57.895 0.00 0.00 34.08 3.85
1535 1537 2.829003 TCGGGATCGAGCTCGCTT 60.829 61.111 30.97 20.26 40.88 4.68
1559 1561 2.654877 GAGTGGTCGGCGAGGAAA 59.345 61.111 11.20 0.00 0.00 3.13
1829 1870 3.755628 CCCTCGCCGTCCTCGAAA 61.756 66.667 0.00 0.00 39.71 3.46
1844 1885 4.660938 AAGCGCCACACCTTCCCC 62.661 66.667 2.29 0.00 0.00 4.81
1997 2041 3.129462 TCTTGTAGTCGATGAAGAGCTGG 59.871 47.826 0.00 0.00 0.00 4.85
2061 2105 3.053842 ACATGGCCTGTCTCATTCTCATT 60.054 43.478 3.32 0.00 29.94 2.57
2128 2172 0.621280 TCAGCCACCTGATGATCCCA 60.621 55.000 0.00 0.00 42.98 4.37
2299 2343 7.148771 CGATCTGTCTGCATTGATATCTTCTTC 60.149 40.741 3.98 0.00 0.00 2.87
2311 2357 0.538584 TGCTCCGATCTGTCTGCATT 59.461 50.000 0.00 0.00 0.00 3.56
2343 2389 3.780294 TGCAAGGTATTGTACTCTCCCAT 59.220 43.478 0.00 0.00 38.76 4.00
2344 2390 3.055385 GTGCAAGGTATTGTACTCTCCCA 60.055 47.826 0.00 0.00 45.42 4.37
2382 2440 8.091449 AGTGGAATCTATTCAATAAGATCGACC 58.909 37.037 5.15 0.00 38.53 4.79
2423 2481 4.320023 TGCAAAGTATTGTCGCCTTCTAA 58.680 39.130 0.00 0.00 38.85 2.10
2431 2489 6.888797 CGCAAAAATTATGCAAAGTATTGTCG 59.111 34.615 14.37 0.00 44.01 4.35
2438 2496 7.037438 AGATCATCGCAAAAATTATGCAAAGT 58.963 30.769 14.37 0.00 44.01 2.66
2466 2524 9.444600 GAGAACTAAAGGTAACCACATATTCAA 57.555 33.333 0.00 0.00 37.17 2.69
2472 2530 5.836024 TGGAGAACTAAAGGTAACCACAT 57.164 39.130 0.00 0.00 37.17 3.21
2476 2534 7.447545 ACAAGATTTGGAGAACTAAAGGTAACC 59.552 37.037 0.00 0.00 34.12 2.85
2488 2546 6.009589 TGGCAATAGAACAAGATTTGGAGAA 58.990 36.000 0.00 0.00 34.12 2.87
2491 2549 5.951148 TCATGGCAATAGAACAAGATTTGGA 59.049 36.000 0.00 0.00 34.12 3.53
2501 2559 4.563976 GCACAACAATCATGGCAATAGAAC 59.436 41.667 0.00 0.00 0.00 3.01
2542 2604 9.790389 GAATGGTAAAGATCGATCTCGTATAAT 57.210 33.333 27.43 14.22 40.80 1.28
2555 2617 3.891049 AGCACTGGGAATGGTAAAGATC 58.109 45.455 0.00 0.00 0.00 2.75
2585 2647 3.903090 AGCATCACTGAATTGGGGAAAAA 59.097 39.130 0.00 0.00 0.00 1.94
2586 2648 3.509442 AGCATCACTGAATTGGGGAAAA 58.491 40.909 0.00 0.00 0.00 2.29
2587 2649 3.173953 AGCATCACTGAATTGGGGAAA 57.826 42.857 0.00 0.00 0.00 3.13
2588 2650 2.905415 AGCATCACTGAATTGGGGAA 57.095 45.000 0.00 0.00 0.00 3.97
2589 2651 2.846206 ACTAGCATCACTGAATTGGGGA 59.154 45.455 0.00 0.00 0.00 4.81
2590 2652 2.947652 CACTAGCATCACTGAATTGGGG 59.052 50.000 0.00 0.00 0.00 4.96
2591 2653 2.357009 GCACTAGCATCACTGAATTGGG 59.643 50.000 0.00 0.00 41.58 4.12
2592 2654 3.064958 CAGCACTAGCATCACTGAATTGG 59.935 47.826 0.00 0.00 45.49 3.16
2593 2655 3.688185 ACAGCACTAGCATCACTGAATTG 59.312 43.478 0.00 0.00 45.49 2.32
2594 2656 3.947868 ACAGCACTAGCATCACTGAATT 58.052 40.909 0.00 0.00 45.49 2.17
2613 2675 9.642343 AATGTGATAGTGTAAGATAGTCCTACA 57.358 33.333 0.00 0.00 0.00 2.74
2616 2678 8.768501 TCAATGTGATAGTGTAAGATAGTCCT 57.231 34.615 0.00 0.00 0.00 3.85
2627 2689 6.305272 ACTCCTGAATCAATGTGATAGTGT 57.695 37.500 0.00 0.00 35.76 3.55
2631 2693 4.100035 AGCGACTCCTGAATCAATGTGATA 59.900 41.667 0.00 0.00 35.76 2.15
2637 2699 4.631813 GTGTTTAGCGACTCCTGAATCAAT 59.368 41.667 0.00 0.00 0.00 2.57
2652 2714 6.373186 AGTTTACAACTCCTTGTGTTTAGC 57.627 37.500 0.00 0.00 40.98 3.09
2654 2716 7.925043 TGAAGTTTACAACTCCTTGTGTTTA 57.075 32.000 0.00 0.00 41.91 2.01
2701 2763 5.911378 AATTCATTCCTGAGAAAAGGCTC 57.089 39.130 0.00 0.00 37.24 4.70
2731 2914 9.973450 GAATCAAAGTATAGATGCTTCTCTACA 57.027 33.333 20.36 6.64 35.20 2.74
2785 2968 9.797642 TCATGCAGATTACCAATAGATTAATGT 57.202 29.630 0.00 0.00 0.00 2.71
2801 2984 3.753272 GTGTGTACCAGTTCATGCAGATT 59.247 43.478 0.00 0.00 0.00 2.40
2802 2985 3.338249 GTGTGTACCAGTTCATGCAGAT 58.662 45.455 0.00 0.00 0.00 2.90
2804 2987 1.460743 CGTGTGTACCAGTTCATGCAG 59.539 52.381 0.00 0.00 0.00 4.41
2815 2998 2.431942 CACCTCGGCGTGTGTACC 60.432 66.667 19.11 0.00 0.00 3.34
2829 3012 0.804989 CAGTCGAAAATGGGAGCACC 59.195 55.000 0.00 0.00 40.81 5.01
2830 3013 1.808411 TCAGTCGAAAATGGGAGCAC 58.192 50.000 0.00 0.00 0.00 4.40
2831 3014 2.559698 TTCAGTCGAAAATGGGAGCA 57.440 45.000 0.00 0.00 0.00 4.26
2832 3015 3.915437 TTTTCAGTCGAAAATGGGAGC 57.085 42.857 0.00 0.00 44.32 4.70
2839 3022 8.859156 CACAGATTTTTCTTTTTCAGTCGAAAA 58.141 29.630 0.00 0.00 46.80 2.29
2840 3023 8.240682 TCACAGATTTTTCTTTTTCAGTCGAAA 58.759 29.630 0.00 0.00 39.38 3.46
2841 3024 7.757526 TCACAGATTTTTCTTTTTCAGTCGAA 58.242 30.769 0.00 0.00 0.00 3.71
2842 3025 7.279981 TCTCACAGATTTTTCTTTTTCAGTCGA 59.720 33.333 0.00 0.00 0.00 4.20
2843 3026 7.409697 TCTCACAGATTTTTCTTTTTCAGTCG 58.590 34.615 0.00 0.00 0.00 4.18
2844 3027 9.178427 CATCTCACAGATTTTTCTTTTTCAGTC 57.822 33.333 0.00 0.00 31.32 3.51
2845 3028 8.139989 CCATCTCACAGATTTTTCTTTTTCAGT 58.860 33.333 0.00 0.00 31.32 3.41
2846 3029 8.139989 ACCATCTCACAGATTTTTCTTTTTCAG 58.860 33.333 0.00 0.00 31.32 3.02
2847 3030 8.010733 ACCATCTCACAGATTTTTCTTTTTCA 57.989 30.769 0.00 0.00 31.32 2.69
2858 3041 5.563592 TGATGTTTGACCATCTCACAGATT 58.436 37.500 0.00 0.00 41.47 2.40
2859 3042 5.169992 TGATGTTTGACCATCTCACAGAT 57.830 39.130 0.00 0.00 41.47 2.90
2861 3044 5.892160 AATGATGTTTGACCATCTCACAG 57.108 39.130 0.00 0.00 41.47 3.66
2885 3068 7.667219 AGGTTTGATCACACATAACATTTCTCT 59.333 33.333 13.73 0.00 0.00 3.10
2900 3083 3.820467 TCCACATGTTGAGGTTTGATCAC 59.180 43.478 0.00 0.00 29.78 3.06
2927 3110 0.314935 AACCCATGCTGAACAAAGCG 59.685 50.000 0.00 0.00 46.65 4.68
2971 3155 7.935755 TGCCCATCTCATTTGAAATTTGTTTAA 59.064 29.630 0.00 0.00 0.00 1.52
2975 3159 5.486735 TGCCCATCTCATTTGAAATTTGT 57.513 34.783 0.00 0.00 0.00 2.83
2989 3173 1.133575 CCATGACCTTGATGCCCATCT 60.134 52.381 9.44 0.00 38.60 2.90
2990 3174 1.133699 TCCATGACCTTGATGCCCATC 60.134 52.381 0.00 1.35 38.29 3.51
2995 3179 2.928334 ACTGATCCATGACCTTGATGC 58.072 47.619 0.00 0.00 0.00 3.91
2996 3180 5.469084 CACATACTGATCCATGACCTTGATG 59.531 44.000 0.00 0.00 0.00 3.07
2997 3181 5.131642 ACACATACTGATCCATGACCTTGAT 59.868 40.000 0.00 0.00 0.00 2.57
3005 3189 7.790823 TTGACAATACACATACTGATCCATG 57.209 36.000 0.00 0.00 0.00 3.66
3029 3213 4.853924 AGACAAACATCGGCAGATTTTT 57.146 36.364 5.30 5.30 37.27 1.94
3040 3224 8.948631 TGTATCTCCTCATTTAGACAAACATC 57.051 34.615 0.00 0.00 0.00 3.06
3056 3240 5.359194 AATGAACGAACCATGTATCTCCT 57.641 39.130 0.00 0.00 0.00 3.69
3061 3245 8.777413 CATTGAGATAATGAACGAACCATGTAT 58.223 33.333 0.00 0.00 0.00 2.29
3069 3253 9.093970 ACGAAATACATTGAGATAATGAACGAA 57.906 29.630 6.63 0.00 0.00 3.85
3114 3298 1.185315 CCGCAGTTTTCCCATCCAAT 58.815 50.000 0.00 0.00 0.00 3.16
3116 3300 0.322456 CTCCGCAGTTTTCCCATCCA 60.322 55.000 0.00 0.00 0.00 3.41
3132 3316 7.546316 GTCACTAAGACAACCTTCTAATTCTCC 59.454 40.741 0.00 0.00 46.77 3.71
3151 3335 3.056179 TGGCGTCAAGATGATGTCACTAA 60.056 43.478 2.89 0.00 42.44 2.24
3179 3363 4.468095 ACGAATATTTCCATAACGCTGC 57.532 40.909 0.00 0.00 0.00 5.25
3198 3382 7.908193 ACTTTGCAATTTCACTTAAGTTACG 57.092 32.000 5.07 0.00 0.00 3.18
3206 3390 6.096846 ACCTCTACAACTTTGCAATTTCACTT 59.903 34.615 0.00 0.00 0.00 3.16
3208 3392 5.831997 ACCTCTACAACTTTGCAATTTCAC 58.168 37.500 0.00 0.00 0.00 3.18
3209 3393 6.463995 AACCTCTACAACTTTGCAATTTCA 57.536 33.333 0.00 0.00 0.00 2.69
3210 3394 9.129209 GATTAACCTCTACAACTTTGCAATTTC 57.871 33.333 0.00 0.00 0.00 2.17
3213 3399 6.128007 CCGATTAACCTCTACAACTTTGCAAT 60.128 38.462 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.