Multiple sequence alignment - TraesCS3A01G053500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G053500 chr3A 100.000 3563 0 0 1 3563 30443051 30446613 0.000000e+00 6580.0
1 TraesCS3A01G053500 chr3A 95.449 835 28 6 882 1711 30362352 30363181 0.000000e+00 1323.0
2 TraesCS3A01G053500 chr3A 85.714 714 59 19 1 678 30356979 30357685 0.000000e+00 713.0
3 TraesCS3A01G053500 chr3A 93.277 357 21 1 1705 2061 30387569 30387922 1.130000e-144 523.0
4 TraesCS3A01G053500 chr3A 97.345 113 3 0 1599 1711 30364885 30364997 3.630000e-45 193.0
5 TraesCS3A01G053500 chr3A 96.460 113 4 0 1599 1711 30366701 30366813 1.690000e-43 187.0
6 TraesCS3A01G053500 chr3A 96.460 113 4 0 1599 1711 30368517 30368629 1.690000e-43 187.0
7 TraesCS3A01G053500 chrUn 90.385 1664 135 12 991 2646 38416561 38418207 0.000000e+00 2163.0
8 TraesCS3A01G053500 chr4A 98.771 895 11 0 2669 3563 582812544 582813438 0.000000e+00 1592.0
9 TraesCS3A01G053500 chr4A 97.887 899 14 5 2667 3563 577857834 577856939 0.000000e+00 1550.0
10 TraesCS3A01G053500 chr2A 98.552 898 12 1 2667 3563 757880631 757881528 0.000000e+00 1585.0
11 TraesCS3A01G053500 chr2A 82.031 128 23 0 1104 1231 136086886 136087013 3.760000e-20 110.0
12 TraesCS3A01G053500 chr1A 98.441 898 12 2 2666 3563 551575063 551574168 0.000000e+00 1580.0
13 TraesCS3A01G053500 chr1A 97.884 898 18 1 2666 3563 42528569 42529465 0.000000e+00 1552.0
14 TraesCS3A01G053500 chr1A 97.210 896 20 2 2668 3563 577712766 577713656 0.000000e+00 1511.0
15 TraesCS3A01G053500 chr7A 98.218 898 15 1 2667 3563 24992917 24992020 0.000000e+00 1568.0
16 TraesCS3A01G053500 chr6A 98.103 896 17 0 2668 3563 73545801 73546696 0.000000e+00 1561.0
17 TraesCS3A01G053500 chr6A 97.444 900 20 3 2665 3563 614286662 614285765 0.000000e+00 1531.0
18 TraesCS3A01G053500 chr3B 86.864 708 55 24 1 678 35851438 35850739 0.000000e+00 758.0
19 TraesCS3A01G053500 chr3B 91.477 528 38 5 2124 2646 36016704 36017229 0.000000e+00 719.0
20 TraesCS3A01G053500 chr3B 90.495 505 48 0 1628 2132 36015015 36015519 0.000000e+00 667.0
21 TraesCS3A01G053500 chr3B 81.843 738 60 31 6 678 36044078 36044806 1.450000e-153 553.0
22 TraesCS3A01G053500 chr3B 88.028 284 28 4 1 279 36000798 36001080 7.370000e-87 331.0
23 TraesCS3A01G053500 chr3B 91.981 212 17 0 1056 1267 36014461 36014672 7.480000e-77 298.0
24 TraesCS3A01G053500 chr3B 97.872 47 1 0 351 397 36001122 36001168 8.200000e-12 82.4
25 TraesCS3A01G053500 chr2B 73.600 750 162 28 1064 1798 182926004 182926732 4.560000e-64 255.0
26 TraesCS3A01G053500 chr2D 72.894 819 176 37 1000 1798 129344865 129345657 1.280000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G053500 chr3A 30443051 30446613 3562 False 6580.000000 6580 100.000000 1 3563 1 chr3A.!!$F3 3562
1 TraesCS3A01G053500 chr3A 30356979 30357685 706 False 713.000000 713 85.714000 1 678 1 chr3A.!!$F1 677
2 TraesCS3A01G053500 chr3A 30362352 30368629 6277 False 472.500000 1323 96.428500 882 1711 4 chr3A.!!$F4 829
3 TraesCS3A01G053500 chrUn 38416561 38418207 1646 False 2163.000000 2163 90.385000 991 2646 1 chrUn.!!$F1 1655
4 TraesCS3A01G053500 chr4A 582812544 582813438 894 False 1592.000000 1592 98.771000 2669 3563 1 chr4A.!!$F1 894
5 TraesCS3A01G053500 chr4A 577856939 577857834 895 True 1550.000000 1550 97.887000 2667 3563 1 chr4A.!!$R1 896
6 TraesCS3A01G053500 chr2A 757880631 757881528 897 False 1585.000000 1585 98.552000 2667 3563 1 chr2A.!!$F2 896
7 TraesCS3A01G053500 chr1A 551574168 551575063 895 True 1580.000000 1580 98.441000 2666 3563 1 chr1A.!!$R1 897
8 TraesCS3A01G053500 chr1A 42528569 42529465 896 False 1552.000000 1552 97.884000 2666 3563 1 chr1A.!!$F1 897
9 TraesCS3A01G053500 chr1A 577712766 577713656 890 False 1511.000000 1511 97.210000 2668 3563 1 chr1A.!!$F2 895
10 TraesCS3A01G053500 chr7A 24992020 24992917 897 True 1568.000000 1568 98.218000 2667 3563 1 chr7A.!!$R1 896
11 TraesCS3A01G053500 chr6A 73545801 73546696 895 False 1561.000000 1561 98.103000 2668 3563 1 chr6A.!!$F1 895
12 TraesCS3A01G053500 chr6A 614285765 614286662 897 True 1531.000000 1531 97.444000 2665 3563 1 chr6A.!!$R1 898
13 TraesCS3A01G053500 chr3B 35850739 35851438 699 True 758.000000 758 86.864000 1 678 1 chr3B.!!$R1 677
14 TraesCS3A01G053500 chr3B 36014461 36017229 2768 False 561.333333 719 91.317667 1056 2646 3 chr3B.!!$F3 1590
15 TraesCS3A01G053500 chr3B 36044078 36044806 728 False 553.000000 553 81.843000 6 678 1 chr3B.!!$F1 672
16 TraesCS3A01G053500 chr2B 182926004 182926732 728 False 255.000000 255 73.600000 1064 1798 1 chr2B.!!$F1 734
17 TraesCS3A01G053500 chr2D 129344865 129345657 792 False 241.000000 241 72.894000 1000 1798 1 chr2D.!!$F1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 730 0.033796 CCACACCAGCTGAATCCCAT 60.034 55.0 17.39 0.0 0.00 4.00 F
767 842 0.042448 GCGTGGTTCGTTTGACTGAC 60.042 55.0 0.00 0.0 42.13 3.51 F
1908 3257 0.096976 GCCATGACGGTTTCATCGTG 59.903 55.0 0.00 0.0 43.68 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 3249 0.321564 CAGGTGGAAGGCACGATGAA 60.322 55.00 0.00 0.0 0.00 2.57 R
1939 3288 0.451783 GGTGACAACGATGATTGCCC 59.548 55.00 0.00 0.0 32.47 5.36 R
3322 7887 9.404848 TGAGAGCATTGATCATCTATTCTTTTT 57.595 29.63 4.52 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 5.065731 CCTTCTTGATGAATGAACTACAGCC 59.934 44.000 0.00 0.00 33.71 4.85
33 35 1.066430 TGAATGAACTACAGCCCGTCC 60.066 52.381 0.00 0.00 0.00 4.79
45 47 2.252260 CCGTCCTGCTGCGTTTTG 59.748 61.111 0.00 0.00 0.00 2.44
53 57 3.068873 TCCTGCTGCGTTTTGGTTAAAAT 59.931 39.130 0.00 0.00 38.01 1.82
214 246 5.038033 GCTCGAACTAAGATGACTAGGTTG 58.962 45.833 0.00 0.00 0.00 3.77
242 274 0.036164 AGCAGTATTGTGGGCAACGA 59.964 50.000 0.00 0.00 37.44 3.85
272 308 7.573710 TCGGATCAAATCATATTATAAGGGGG 58.426 38.462 0.00 0.00 0.00 5.40
279 315 5.116084 TCATATTATAAGGGGGATGCAGC 57.884 43.478 0.00 0.00 0.00 5.25
311 347 3.895025 CCCTCGATGTGGCACAAG 58.105 61.111 25.95 20.74 44.16 3.16
410 446 3.133901 TCGCTTTCAATAGGATAGCACCA 59.866 43.478 7.37 0.00 46.99 4.17
426 462 2.287644 GCACCAAAAATTGTCACCTTGC 59.712 45.455 0.00 0.00 0.00 4.01
431 467 4.378774 CAAAAATTGTCACCTTGCATGGA 58.621 39.130 24.48 2.52 0.00 3.41
434 470 0.478072 TTGTCACCTTGCATGGACCT 59.522 50.000 24.48 0.00 0.00 3.85
512 557 5.900425 AGTAGCTCTGACATGTTCATGTAG 58.100 41.667 16.79 12.36 34.45 2.74
515 560 5.555017 AGCTCTGACATGTTCATGTAGTTT 58.445 37.500 16.79 3.96 34.45 2.66
530 575 5.781210 TGTAGTTTGATGCACAATTTCCA 57.219 34.783 0.00 0.00 38.36 3.53
567 637 9.660180 AGTCTTAAGAGTAAAAGATCATGAACC 57.340 33.333 11.23 0.00 34.43 3.62
569 639 8.311836 TCTTAAGAGTAAAAGATCATGAACCGT 58.688 33.333 0.00 0.00 0.00 4.83
576 646 9.530633 AGTAAAAGATCATGAACCGTAGAATAC 57.469 33.333 0.00 0.00 38.50 1.89
596 670 0.597118 AGATCTTCGAGCGAGCATGC 60.597 55.000 10.51 10.51 0.00 4.06
603 677 4.085876 AGCGAGCATGCTGGTTTT 57.914 50.000 28.27 11.13 45.28 2.43
604 678 2.344535 AGCGAGCATGCTGGTTTTT 58.655 47.368 28.27 8.54 45.28 1.94
652 727 0.962356 CCACCACACCAGCTGAATCC 60.962 60.000 17.39 0.00 0.00 3.01
655 730 0.033796 CCACACCAGCTGAATCCCAT 60.034 55.000 17.39 0.00 0.00 4.00
678 753 8.284693 CCATTGGCTAAAAGTTTGATTCTTTTG 58.715 33.333 12.06 5.57 42.55 2.44
679 754 9.044150 CATTGGCTAAAAGTTTGATTCTTTTGA 57.956 29.630 12.06 0.00 42.55 2.69
680 755 9.612066 ATTGGCTAAAAGTTTGATTCTTTTGAA 57.388 25.926 12.06 0.00 42.55 2.69
681 756 9.442047 TTGGCTAAAAGTTTGATTCTTTTGAAA 57.558 25.926 12.06 1.94 42.55 2.69
682 757 9.097257 TGGCTAAAAGTTTGATTCTTTTGAAAG 57.903 29.630 12.06 0.00 42.55 2.62
683 758 9.098355 GGCTAAAAGTTTGATTCTTTTGAAAGT 57.902 29.630 12.06 0.00 42.55 2.66
687 762 7.740519 AAGTTTGATTCTTTTGAAAGTCACG 57.259 32.000 3.63 0.00 42.31 4.35
688 763 6.852664 AGTTTGATTCTTTTGAAAGTCACGT 58.147 32.000 3.63 0.00 42.31 4.49
689 764 7.312899 AGTTTGATTCTTTTGAAAGTCACGTT 58.687 30.769 3.63 0.00 42.31 3.99
690 765 7.812669 AGTTTGATTCTTTTGAAAGTCACGTTT 59.187 29.630 3.63 0.00 42.31 3.60
691 766 7.734538 TTGATTCTTTTGAAAGTCACGTTTC 57.265 32.000 3.63 0.00 42.31 2.78
692 767 6.847400 TGATTCTTTTGAAAGTCACGTTTCA 58.153 32.000 3.63 0.00 43.21 2.69
693 768 6.966632 TGATTCTTTTGAAAGTCACGTTTCAG 59.033 34.615 3.63 0.00 45.00 3.02
694 769 5.873179 TCTTTTGAAAGTCACGTTTCAGT 57.127 34.783 3.63 0.00 45.00 3.41
695 770 6.249035 TCTTTTGAAAGTCACGTTTCAGTT 57.751 33.333 3.63 0.00 45.00 3.16
696 771 6.083630 TCTTTTGAAAGTCACGTTTCAGTTG 58.916 36.000 3.63 0.00 45.00 3.16
697 772 4.349663 TTGAAAGTCACGTTTCAGTTGG 57.650 40.909 1.10 0.00 45.00 3.77
698 773 3.340034 TGAAAGTCACGTTTCAGTTGGT 58.660 40.909 0.00 0.00 40.68 3.67
699 774 3.126171 TGAAAGTCACGTTTCAGTTGGTG 59.874 43.478 0.00 0.00 40.68 4.17
700 775 2.396590 AGTCACGTTTCAGTTGGTGT 57.603 45.000 0.00 0.00 0.00 4.16
701 776 3.530265 AGTCACGTTTCAGTTGGTGTA 57.470 42.857 0.00 0.00 0.00 2.90
702 777 3.864243 AGTCACGTTTCAGTTGGTGTAA 58.136 40.909 0.00 0.00 0.00 2.41
703 778 4.448210 AGTCACGTTTCAGTTGGTGTAAT 58.552 39.130 0.00 0.00 0.00 1.89
704 779 4.879545 AGTCACGTTTCAGTTGGTGTAATT 59.120 37.500 0.00 0.00 0.00 1.40
705 780 4.967575 GTCACGTTTCAGTTGGTGTAATTG 59.032 41.667 0.00 0.00 0.00 2.32
706 781 3.728718 CACGTTTCAGTTGGTGTAATTGC 59.271 43.478 0.00 0.00 0.00 3.56
707 782 3.378742 ACGTTTCAGTTGGTGTAATTGCA 59.621 39.130 0.00 0.00 0.00 4.08
708 783 4.037446 ACGTTTCAGTTGGTGTAATTGCAT 59.963 37.500 0.00 0.00 0.00 3.96
709 784 4.382457 CGTTTCAGTTGGTGTAATTGCATG 59.618 41.667 0.00 0.00 0.00 4.06
710 785 4.517952 TTCAGTTGGTGTAATTGCATGG 57.482 40.909 0.00 0.00 0.00 3.66
711 786 3.495331 TCAGTTGGTGTAATTGCATGGT 58.505 40.909 0.00 0.00 0.00 3.55
712 787 4.657013 TCAGTTGGTGTAATTGCATGGTA 58.343 39.130 0.00 0.00 0.00 3.25
713 788 5.260424 TCAGTTGGTGTAATTGCATGGTAT 58.740 37.500 0.00 0.00 0.00 2.73
714 789 5.356751 TCAGTTGGTGTAATTGCATGGTATC 59.643 40.000 0.00 0.00 0.00 2.24
715 790 4.644685 AGTTGGTGTAATTGCATGGTATCC 59.355 41.667 0.00 0.00 0.00 2.59
716 791 4.242336 TGGTGTAATTGCATGGTATCCA 57.758 40.909 0.00 0.00 38.19 3.41
717 792 4.604156 TGGTGTAATTGCATGGTATCCAA 58.396 39.130 0.00 0.00 36.95 3.53
718 793 5.019470 TGGTGTAATTGCATGGTATCCAAA 58.981 37.500 0.00 0.00 36.95 3.28
719 794 5.481824 TGGTGTAATTGCATGGTATCCAAAA 59.518 36.000 0.00 0.00 36.95 2.44
720 795 6.014242 TGGTGTAATTGCATGGTATCCAAAAA 60.014 34.615 0.00 0.00 36.95 1.94
721 796 7.047271 GGTGTAATTGCATGGTATCCAAAAAT 58.953 34.615 0.00 0.00 36.95 1.82
722 797 7.552330 GGTGTAATTGCATGGTATCCAAAAATT 59.448 33.333 0.00 3.14 36.95 1.82
723 798 8.389603 GTGTAATTGCATGGTATCCAAAAATTG 58.610 33.333 0.00 1.54 36.95 2.32
724 799 8.316946 TGTAATTGCATGGTATCCAAAAATTGA 58.683 29.630 0.00 0.00 36.95 2.57
725 800 9.328845 GTAATTGCATGGTATCCAAAAATTGAT 57.671 29.630 0.00 0.00 36.95 2.57
726 801 8.810990 AATTGCATGGTATCCAAAAATTGATT 57.189 26.923 0.00 0.00 36.95 2.57
727 802 7.846644 TTGCATGGTATCCAAAAATTGATTC 57.153 32.000 0.00 0.00 36.95 2.52
728 803 6.347696 TGCATGGTATCCAAAAATTGATTCC 58.652 36.000 0.00 0.00 36.95 3.01
729 804 5.463061 GCATGGTATCCAAAAATTGATTCCG 59.537 40.000 0.00 0.00 36.95 4.30
730 805 5.004922 TGGTATCCAAAAATTGATTCCGC 57.995 39.130 0.00 0.00 0.00 5.54
731 806 4.464244 TGGTATCCAAAAATTGATTCCGCA 59.536 37.500 0.00 0.00 0.00 5.69
732 807 5.043248 GGTATCCAAAAATTGATTCCGCAG 58.957 41.667 0.00 0.00 0.00 5.18
733 808 5.163561 GGTATCCAAAAATTGATTCCGCAGA 60.164 40.000 0.00 0.00 0.00 4.26
734 809 4.862902 TCCAAAAATTGATTCCGCAGAA 57.137 36.364 0.00 0.00 36.15 3.02
735 810 5.207110 TCCAAAAATTGATTCCGCAGAAA 57.793 34.783 0.00 0.00 35.09 2.52
736 811 4.987912 TCCAAAAATTGATTCCGCAGAAAC 59.012 37.500 0.00 0.00 35.09 2.78
737 812 4.152223 CCAAAAATTGATTCCGCAGAAACC 59.848 41.667 0.00 0.00 35.09 3.27
738 813 4.599047 AAAATTGATTCCGCAGAAACCA 57.401 36.364 0.00 0.00 35.09 3.67
739 814 4.599047 AAATTGATTCCGCAGAAACCAA 57.401 36.364 4.14 4.14 35.09 3.67
740 815 3.855689 ATTGATTCCGCAGAAACCAAG 57.144 42.857 6.89 0.00 35.09 3.61
741 816 0.881118 TGATTCCGCAGAAACCAAGC 59.119 50.000 0.00 0.00 35.09 4.01
745 820 4.012895 CGCAGAAACCAAGCGCGT 62.013 61.111 8.43 0.00 45.14 6.01
746 821 2.663478 CGCAGAAACCAAGCGCGTA 61.663 57.895 8.43 0.00 45.14 4.42
747 822 1.154469 GCAGAAACCAAGCGCGTAC 60.154 57.895 8.43 0.00 0.00 3.67
748 823 1.129809 CAGAAACCAAGCGCGTACG 59.870 57.895 11.84 11.84 44.07 3.67
759 834 3.397317 GCGTACGCGTGGTTCGTT 61.397 61.111 26.17 0.00 40.96 3.85
760 835 2.930965 GCGTACGCGTGGTTCGTTT 61.931 57.895 26.17 0.00 40.96 3.60
761 836 1.154980 CGTACGCGTGGTTCGTTTG 60.155 57.895 24.59 0.00 40.89 2.93
762 837 1.538946 CGTACGCGTGGTTCGTTTGA 61.539 55.000 24.59 0.00 40.89 2.69
763 838 0.111574 GTACGCGTGGTTCGTTTGAC 60.112 55.000 24.59 3.51 40.89 3.18
764 839 0.248990 TACGCGTGGTTCGTTTGACT 60.249 50.000 24.59 0.00 40.89 3.41
765 840 1.083657 CGCGTGGTTCGTTTGACTG 60.084 57.895 0.00 0.00 42.13 3.51
766 841 1.484227 CGCGTGGTTCGTTTGACTGA 61.484 55.000 0.00 0.00 42.13 3.41
767 842 0.042448 GCGTGGTTCGTTTGACTGAC 60.042 55.000 0.00 0.00 42.13 3.51
768 843 1.567504 CGTGGTTCGTTTGACTGACT 58.432 50.000 0.00 0.00 34.52 3.41
769 844 1.521423 CGTGGTTCGTTTGACTGACTC 59.479 52.381 0.00 0.00 34.52 3.36
770 845 2.798499 CGTGGTTCGTTTGACTGACTCT 60.798 50.000 0.00 0.00 34.52 3.24
771 846 3.195661 GTGGTTCGTTTGACTGACTCTT 58.804 45.455 0.00 0.00 0.00 2.85
772 847 3.245519 GTGGTTCGTTTGACTGACTCTTC 59.754 47.826 0.00 0.00 0.00 2.87
773 848 2.801111 GGTTCGTTTGACTGACTCTTCC 59.199 50.000 0.00 0.00 0.00 3.46
774 849 3.454375 GTTCGTTTGACTGACTCTTCCA 58.546 45.455 0.00 0.00 0.00 3.53
775 850 3.093717 TCGTTTGACTGACTCTTCCAC 57.906 47.619 0.00 0.00 0.00 4.02
776 851 2.693591 TCGTTTGACTGACTCTTCCACT 59.306 45.455 0.00 0.00 0.00 4.00
777 852 3.887110 TCGTTTGACTGACTCTTCCACTA 59.113 43.478 0.00 0.00 0.00 2.74
778 853 3.982058 CGTTTGACTGACTCTTCCACTAC 59.018 47.826 0.00 0.00 0.00 2.73
779 854 3.917329 TTGACTGACTCTTCCACTACG 57.083 47.619 0.00 0.00 0.00 3.51
780 855 3.136009 TGACTGACTCTTCCACTACGA 57.864 47.619 0.00 0.00 0.00 3.43
781 856 3.075148 TGACTGACTCTTCCACTACGAG 58.925 50.000 0.00 0.00 0.00 4.18
782 857 2.420722 GACTGACTCTTCCACTACGAGG 59.579 54.545 0.00 0.00 0.00 4.63
783 858 2.040012 ACTGACTCTTCCACTACGAGGA 59.960 50.000 0.00 0.00 0.00 3.71
784 859 3.082548 CTGACTCTTCCACTACGAGGAA 58.917 50.000 0.00 0.00 42.62 3.36
791 866 3.150458 TCCACTACGAGGAAGACTTCA 57.850 47.619 16.85 0.00 30.71 3.02
792 867 2.818432 TCCACTACGAGGAAGACTTCAC 59.182 50.000 16.85 9.08 30.71 3.18
793 868 2.557056 CCACTACGAGGAAGACTTCACA 59.443 50.000 16.85 0.00 0.00 3.58
794 869 3.566523 CACTACGAGGAAGACTTCACAC 58.433 50.000 16.85 6.51 0.00 3.82
795 870 3.253677 CACTACGAGGAAGACTTCACACT 59.746 47.826 16.85 4.96 0.00 3.55
796 871 3.890147 ACTACGAGGAAGACTTCACACTT 59.110 43.478 16.85 4.20 0.00 3.16
797 872 3.099267 ACGAGGAAGACTTCACACTTG 57.901 47.619 16.85 10.64 0.00 3.16
798 873 2.224066 ACGAGGAAGACTTCACACTTGG 60.224 50.000 16.85 4.57 0.00 3.61
799 874 2.035961 CGAGGAAGACTTCACACTTGGA 59.964 50.000 16.85 0.00 0.00 3.53
800 875 3.492656 CGAGGAAGACTTCACACTTGGAA 60.493 47.826 16.85 0.00 0.00 3.53
801 876 4.061596 GAGGAAGACTTCACACTTGGAAG 58.938 47.826 16.85 0.00 45.63 3.46
802 877 3.711704 AGGAAGACTTCACACTTGGAAGA 59.288 43.478 16.85 0.00 43.46 2.87
803 878 3.810386 GGAAGACTTCACACTTGGAAGAC 59.190 47.826 16.85 3.25 43.46 3.01
804 879 4.443598 GGAAGACTTCACACTTGGAAGACT 60.444 45.833 16.85 5.41 44.95 3.24
805 880 4.329462 AGACTTCACACTTGGAAGACTC 57.671 45.455 8.96 0.00 41.30 3.36
806 881 3.053455 GACTTCACACTTGGAAGACTCG 58.947 50.000 8.96 0.00 43.46 4.18
807 882 2.693591 ACTTCACACTTGGAAGACTCGA 59.306 45.455 8.96 0.00 43.46 4.04
808 883 3.243569 ACTTCACACTTGGAAGACTCGAG 60.244 47.826 11.84 11.84 43.46 4.04
809 884 2.307768 TCACACTTGGAAGACTCGAGT 58.692 47.619 20.18 20.18 0.00 4.18
810 885 2.693591 TCACACTTGGAAGACTCGAGTT 59.306 45.455 21.08 4.10 0.00 3.01
811 886 3.887110 TCACACTTGGAAGACTCGAGTTA 59.113 43.478 21.08 1.51 0.00 2.24
812 887 4.023107 TCACACTTGGAAGACTCGAGTTAG 60.023 45.833 21.08 12.19 0.00 2.34
813 888 3.890147 ACACTTGGAAGACTCGAGTTAGT 59.110 43.478 21.08 12.78 0.00 2.24
814 889 4.023021 ACACTTGGAAGACTCGAGTTAGTC 60.023 45.833 21.08 16.15 45.20 2.59
824 899 5.759963 GACTCGAGTTAGTCTCAGAAAACA 58.240 41.667 21.08 0.00 42.21 2.83
825 900 5.521544 ACTCGAGTTAGTCTCAGAAAACAC 58.478 41.667 13.58 0.00 42.88 3.32
826 901 5.299782 ACTCGAGTTAGTCTCAGAAAACACT 59.700 40.000 13.58 0.00 42.88 3.55
827 902 6.145338 TCGAGTTAGTCTCAGAAAACACTT 57.855 37.500 4.42 0.00 42.88 3.16
828 903 5.977725 TCGAGTTAGTCTCAGAAAACACTTG 59.022 40.000 4.42 0.00 42.88 3.16
829 904 5.977725 CGAGTTAGTCTCAGAAAACACTTGA 59.022 40.000 4.42 0.00 42.88 3.02
830 905 6.475727 CGAGTTAGTCTCAGAAAACACTTGAA 59.524 38.462 4.42 0.00 42.88 2.69
831 906 7.515371 CGAGTTAGTCTCAGAAAACACTTGAAC 60.515 40.741 4.42 0.00 42.88 3.18
832 907 7.331791 AGTTAGTCTCAGAAAACACTTGAACT 58.668 34.615 4.42 0.00 0.00 3.01
833 908 7.492994 AGTTAGTCTCAGAAAACACTTGAACTC 59.507 37.037 4.42 0.00 0.00 3.01
834 909 5.119694 AGTCTCAGAAAACACTTGAACTCC 58.880 41.667 0.00 0.00 0.00 3.85
835 910 4.273724 GTCTCAGAAAACACTTGAACTCCC 59.726 45.833 0.00 0.00 0.00 4.30
836 911 4.164221 TCTCAGAAAACACTTGAACTCCCT 59.836 41.667 0.00 0.00 0.00 4.20
837 912 4.855340 TCAGAAAACACTTGAACTCCCTT 58.145 39.130 0.00 0.00 0.00 3.95
838 913 4.640201 TCAGAAAACACTTGAACTCCCTTG 59.360 41.667 0.00 0.00 0.00 3.61
839 914 4.640201 CAGAAAACACTTGAACTCCCTTGA 59.360 41.667 0.00 0.00 0.00 3.02
840 915 4.884164 AGAAAACACTTGAACTCCCTTGAG 59.116 41.667 0.00 0.00 44.62 3.02
841 916 4.503714 AAACACTTGAACTCCCTTGAGA 57.496 40.909 0.00 0.00 41.42 3.27
842 917 3.760580 ACACTTGAACTCCCTTGAGAG 57.239 47.619 0.00 0.00 41.42 3.20
843 918 3.309296 ACACTTGAACTCCCTTGAGAGA 58.691 45.455 0.00 0.00 41.42 3.10
844 919 3.323403 ACACTTGAACTCCCTTGAGAGAG 59.677 47.826 0.00 0.00 41.42 3.20
845 920 3.576118 CACTTGAACTCCCTTGAGAGAGA 59.424 47.826 0.00 0.00 41.42 3.10
846 921 3.831911 ACTTGAACTCCCTTGAGAGAGAG 59.168 47.826 0.00 0.00 41.42 3.20
847 922 3.816398 TGAACTCCCTTGAGAGAGAGA 57.184 47.619 0.00 0.00 41.42 3.10
848 923 4.119556 TGAACTCCCTTGAGAGAGAGAA 57.880 45.455 0.00 0.00 41.42 2.87
849 924 4.085733 TGAACTCCCTTGAGAGAGAGAAG 58.914 47.826 0.00 0.00 41.42 2.85
850 925 4.202620 TGAACTCCCTTGAGAGAGAGAAGA 60.203 45.833 0.00 0.00 41.42 2.87
851 926 3.697166 ACTCCCTTGAGAGAGAGAAGAC 58.303 50.000 0.00 0.00 41.42 3.01
852 927 3.333680 ACTCCCTTGAGAGAGAGAAGACT 59.666 47.826 0.00 0.00 41.42 3.24
853 928 4.202673 ACTCCCTTGAGAGAGAGAAGACTT 60.203 45.833 0.00 0.00 41.42 3.01
854 929 4.340617 TCCCTTGAGAGAGAGAAGACTTC 58.659 47.826 7.14 7.14 0.00 3.01
855 930 4.085733 CCCTTGAGAGAGAGAAGACTTCA 58.914 47.826 17.34 0.00 0.00 3.02
856 931 4.711355 CCCTTGAGAGAGAGAAGACTTCAT 59.289 45.833 17.34 5.37 0.00 2.57
857 932 5.163519 CCCTTGAGAGAGAGAAGACTTCATC 60.164 48.000 17.34 13.69 0.00 2.92
858 933 5.418524 CCTTGAGAGAGAGAAGACTTCATCA 59.581 44.000 17.34 8.15 0.00 3.07
859 934 6.097270 CCTTGAGAGAGAGAAGACTTCATCAT 59.903 42.308 17.34 7.65 0.00 2.45
860 935 7.364056 CCTTGAGAGAGAGAAGACTTCATCATT 60.364 40.741 17.34 7.07 0.00 2.57
861 936 6.865411 TGAGAGAGAGAAGACTTCATCATTG 58.135 40.000 17.34 0.00 0.00 2.82
862 937 6.662663 TGAGAGAGAGAAGACTTCATCATTGA 59.337 38.462 17.34 0.00 0.00 2.57
863 938 6.866480 AGAGAGAGAAGACTTCATCATTGAC 58.134 40.000 17.34 5.99 0.00 3.18
864 939 6.664816 AGAGAGAGAAGACTTCATCATTGACT 59.335 38.462 17.34 5.05 0.00 3.41
865 940 7.178983 AGAGAGAGAAGACTTCATCATTGACTT 59.821 37.037 17.34 0.00 0.00 3.01
866 941 7.322664 AGAGAGAAGACTTCATCATTGACTTC 58.677 38.462 17.34 0.00 34.81 3.01
867 942 7.002250 AGAGAAGACTTCATCATTGACTTCA 57.998 36.000 17.34 0.00 36.04 3.02
868 943 6.873076 AGAGAAGACTTCATCATTGACTTCAC 59.127 38.462 17.34 7.87 36.04 3.18
869 944 6.528321 AGAAGACTTCATCATTGACTTCACA 58.472 36.000 17.34 0.00 36.04 3.58
870 945 6.426328 AGAAGACTTCATCATTGACTTCACAC 59.574 38.462 17.34 0.00 36.04 3.82
871 946 4.687948 AGACTTCATCATTGACTTCACACG 59.312 41.667 0.00 0.00 0.00 4.49
872 947 4.380531 ACTTCATCATTGACTTCACACGT 58.619 39.130 0.00 0.00 0.00 4.49
873 948 4.816385 ACTTCATCATTGACTTCACACGTT 59.184 37.500 0.00 0.00 0.00 3.99
874 949 5.296780 ACTTCATCATTGACTTCACACGTTT 59.703 36.000 0.00 0.00 0.00 3.60
875 950 5.094429 TCATCATTGACTTCACACGTTTG 57.906 39.130 0.00 0.00 0.00 2.93
876 951 4.574421 TCATCATTGACTTCACACGTTTGT 59.426 37.500 0.98 0.00 35.84 2.83
877 952 4.955925 TCATTGACTTCACACGTTTGTT 57.044 36.364 0.98 0.00 31.66 2.83
878 953 4.657055 TCATTGACTTCACACGTTTGTTG 58.343 39.130 0.98 0.00 31.66 3.33
879 954 2.535934 TGACTTCACACGTTTGTTGC 57.464 45.000 0.98 0.00 31.66 4.17
880 955 1.201976 TGACTTCACACGTTTGTTGCG 60.202 47.619 0.98 0.00 31.66 4.85
881 956 1.061421 GACTTCACACGTTTGTTGCGA 59.939 47.619 0.98 0.00 31.66 5.10
882 957 1.465387 ACTTCACACGTTTGTTGCGAA 59.535 42.857 0.98 0.00 31.66 4.70
883 958 2.101125 CTTCACACGTTTGTTGCGAAG 58.899 47.619 0.98 0.00 31.66 3.79
884 959 1.360820 TCACACGTTTGTTGCGAAGA 58.639 45.000 0.98 0.00 31.66 2.87
885 960 1.061421 TCACACGTTTGTTGCGAAGAC 59.939 47.619 0.98 0.00 31.66 3.01
886 961 1.062002 CACACGTTTGTTGCGAAGACT 59.938 47.619 0.00 0.00 31.66 3.24
909 984 3.502191 AGTCTCTCTTGATCGAAGCAC 57.498 47.619 0.00 0.00 0.00 4.40
929 1004 0.179067 AACGCGTGGAAAAGGACTCA 60.179 50.000 14.98 0.00 0.00 3.41
933 1008 1.531578 GCGTGGAAAAGGACTCAAGAC 59.468 52.381 0.00 0.00 0.00 3.01
948 1023 4.101898 ACTCAAGACTCCTCTCGCTCTATA 59.898 45.833 0.00 0.00 0.00 1.31
951 1026 6.953101 TCAAGACTCCTCTCGCTCTATATAT 58.047 40.000 0.00 0.00 0.00 0.86
952 1027 8.080363 TCAAGACTCCTCTCGCTCTATATATA 57.920 38.462 0.00 0.00 0.00 0.86
953 1028 8.201464 TCAAGACTCCTCTCGCTCTATATATAG 58.799 40.741 12.84 12.84 0.00 1.31
954 1029 7.670605 AGACTCCTCTCGCTCTATATATAGT 57.329 40.000 17.44 0.00 0.00 2.12
956 1031 8.636213 AGACTCCTCTCGCTCTATATATAGTAC 58.364 40.741 17.44 10.81 0.00 2.73
957 1032 8.308851 ACTCCTCTCGCTCTATATATAGTACA 57.691 38.462 17.44 0.44 0.00 2.90
958 1033 8.418662 ACTCCTCTCGCTCTATATATAGTACAG 58.581 40.741 17.44 10.16 0.00 2.74
959 1034 8.308851 TCCTCTCGCTCTATATATAGTACAGT 57.691 38.462 17.44 0.00 0.00 3.55
960 1035 8.415553 TCCTCTCGCTCTATATATAGTACAGTC 58.584 40.741 17.44 5.81 0.00 3.51
966 1041 7.764901 CGCTCTATATATAGTACAGTCACCTGA 59.235 40.741 17.44 0.00 41.50 3.86
975 1050 2.958818 ACAGTCACCTGACCAGTCTTA 58.041 47.619 1.66 0.00 45.85 2.10
976 1051 3.511477 ACAGTCACCTGACCAGTCTTAT 58.489 45.455 1.66 0.00 45.85 1.73
979 1054 4.462834 CAGTCACCTGACCAGTCTTATGTA 59.537 45.833 1.66 0.00 45.85 2.29
980 1055 4.463186 AGTCACCTGACCAGTCTTATGTAC 59.537 45.833 1.66 0.00 45.85 2.90
981 1056 4.219944 GTCACCTGACCAGTCTTATGTACA 59.780 45.833 0.00 0.00 39.07 2.90
1048 1123 2.101770 GCGAGACGGTTACGAGGG 59.898 66.667 10.92 0.00 44.60 4.30
1668 1840 1.153369 GAGGTTCATGCTGCGCCTA 60.153 57.895 4.18 0.00 0.00 3.93
1806 3155 3.811702 TCCTGGGTGGAGAGCTTG 58.188 61.111 0.00 0.00 40.56 4.01
1821 3170 0.612744 GCTTGCCCTTCAGAGAGACT 59.387 55.000 0.00 0.00 0.00 3.24
1857 3206 1.348064 TACACAGGACCTTGACCCAG 58.652 55.000 9.74 0.00 0.00 4.45
1881 3230 4.803426 CGTCCAGACCCGCTCTGC 62.803 72.222 3.38 0.00 44.80 4.26
1901 3250 3.055719 CAGCGGCCATGACGGTTT 61.056 61.111 2.24 0.00 44.50 3.27
1908 3257 0.096976 GCCATGACGGTTTCATCGTG 59.903 55.000 0.00 0.00 43.68 4.35
1972 3321 2.229792 TGTCACCATCAAAGTCAAGGC 58.770 47.619 0.00 0.00 0.00 4.35
2013 3362 0.818296 AGCAGGTGATCACGGTCTAC 59.182 55.000 19.33 6.27 0.00 2.59
2064 3413 0.950836 CTCCGCACAAAACACATGGA 59.049 50.000 0.00 0.00 0.00 3.41
2081 3430 4.219115 CATGGAGGGAGTAGAAGAAGCTA 58.781 47.826 0.00 0.00 0.00 3.32
2083 3432 4.219115 TGGAGGGAGTAGAAGAAGCTATG 58.781 47.826 0.00 0.00 0.00 2.23
2098 3447 4.373156 AGCTATGTGAAAACTCCAGGTT 57.627 40.909 0.00 0.00 40.28 3.50
2104 3704 4.340617 TGTGAAAACTCCAGGTTTGAAGT 58.659 39.130 0.00 0.00 46.18 3.01
2169 4964 0.739112 CTCAGGACGAGAGCTTTGCC 60.739 60.000 0.00 0.00 45.45 4.52
2196 4991 2.835431 ATCGACGGGGAGGAGCAG 60.835 66.667 0.00 0.00 0.00 4.24
2232 5027 2.243957 TGCGACCTTGCAAGACGTG 61.244 57.895 30.41 18.46 43.02 4.49
2256 5051 3.574074 GAAGCTGCTCCCCAAGGCA 62.574 63.158 1.00 0.00 36.94 4.75
2304 5102 2.871022 CAAGATGTATCAGCTGTGCCTC 59.129 50.000 14.67 7.44 27.64 4.70
2352 5150 2.504244 GTGGAGAAGACGACGCCG 60.504 66.667 0.00 0.00 42.50 6.46
2415 5213 5.918426 TGCATATCAATGGAAGCAAAAGA 57.082 34.783 0.00 0.00 33.38 2.52
2424 5222 1.609072 GGAAGCAAAAGAGTGGTGGAC 59.391 52.381 0.00 0.00 0.00 4.02
2502 5541 2.890474 CTATGGGTCGTGCGTGCC 60.890 66.667 0.00 0.00 0.00 5.01
2517 5558 1.598962 TGCCTCTGACAAGCTGCAC 60.599 57.895 1.02 0.00 0.00 4.57
2543 5821 0.531657 CTCAGCTCCTGGACTGTCAG 59.468 60.000 19.06 0.00 35.37 3.51
2582 5860 2.685380 CCTCCCCTCGCCTTCTGT 60.685 66.667 0.00 0.00 0.00 3.41
2608 5886 4.642437 TCTCTTCATCTAGTAGGCACACTG 59.358 45.833 0.00 0.00 0.00 3.66
2609 5887 3.701542 TCTTCATCTAGTAGGCACACTGG 59.298 47.826 0.00 0.00 0.00 4.00
2615 5893 0.178903 AGTAGGCACACTGGGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
2616 5894 0.912486 GTAGGCACACTGGGGAGAAT 59.088 55.000 0.00 0.00 0.00 2.40
2617 5895 1.134371 GTAGGCACACTGGGGAGAATC 60.134 57.143 0.00 0.00 0.00 2.52
2621 5899 1.406614 GCACACTGGGGAGAATCTCTG 60.407 57.143 10.38 2.71 34.46 3.35
2630 5908 3.374318 GGGGAGAATCTCTGGTCTAGGAA 60.374 52.174 10.38 0.00 34.46 3.36
2642 5920 4.899502 TGGTCTAGGAAGAAGAAAGCAAG 58.100 43.478 0.00 0.00 32.16 4.01
2646 5924 6.456501 GTCTAGGAAGAAGAAAGCAAGTGTA 58.543 40.000 0.00 0.00 32.16 2.90
2647 5925 6.929606 GTCTAGGAAGAAGAAAGCAAGTGTAA 59.070 38.462 0.00 0.00 32.16 2.41
2648 5926 7.441458 GTCTAGGAAGAAGAAAGCAAGTGTAAA 59.559 37.037 0.00 0.00 32.16 2.01
2649 5927 7.990886 TCTAGGAAGAAGAAAGCAAGTGTAAAA 59.009 33.333 0.00 0.00 0.00 1.52
2650 5928 7.404671 AGGAAGAAGAAAGCAAGTGTAAAAA 57.595 32.000 0.00 0.00 0.00 1.94
2651 5929 8.011844 AGGAAGAAGAAAGCAAGTGTAAAAAT 57.988 30.769 0.00 0.00 0.00 1.82
2652 5930 8.478066 AGGAAGAAGAAAGCAAGTGTAAAAATT 58.522 29.630 0.00 0.00 0.00 1.82
2653 5931 8.755941 GGAAGAAGAAAGCAAGTGTAAAAATTC 58.244 33.333 0.00 0.00 0.00 2.17
2654 5932 9.521503 GAAGAAGAAAGCAAGTGTAAAAATTCT 57.478 29.630 0.00 0.00 0.00 2.40
2655 5933 8.862550 AGAAGAAAGCAAGTGTAAAAATTCTG 57.137 30.769 0.00 0.00 0.00 3.02
2656 5934 8.470002 AGAAGAAAGCAAGTGTAAAAATTCTGT 58.530 29.630 0.00 0.00 0.00 3.41
2657 5935 7.992180 AGAAAGCAAGTGTAAAAATTCTGTG 57.008 32.000 0.00 0.00 0.00 3.66
2658 5936 6.980397 AGAAAGCAAGTGTAAAAATTCTGTGG 59.020 34.615 0.00 0.00 0.00 4.17
2659 5937 6.463995 AAGCAAGTGTAAAAATTCTGTGGA 57.536 33.333 0.00 0.00 0.00 4.02
2660 5938 6.076981 AGCAAGTGTAAAAATTCTGTGGAG 57.923 37.500 0.00 0.00 0.00 3.86
2661 5939 5.827797 AGCAAGTGTAAAAATTCTGTGGAGA 59.172 36.000 0.00 0.00 0.00 3.71
2662 5940 5.915196 GCAAGTGTAAAAATTCTGTGGAGAC 59.085 40.000 0.00 0.00 0.00 3.36
2663 5941 5.924475 AGTGTAAAAATTCTGTGGAGACG 57.076 39.130 0.00 0.00 0.00 4.18
2664 5942 4.755123 AGTGTAAAAATTCTGTGGAGACGG 59.245 41.667 0.00 0.00 0.00 4.79
3243 7808 5.954335 GATGGTATCCAGTTTTGACAAAGG 58.046 41.667 0.10 0.00 36.75 3.11
3322 7887 6.238897 CCATAAAAACCTAGCACAAGAACACA 60.239 38.462 0.00 0.00 0.00 3.72
3549 9179 1.201880 AGCGACTTAACCGAGAAGGAC 59.798 52.381 0.00 0.00 45.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 13 2.866762 GACGGGCTGTAGTTCATTCATC 59.133 50.000 0.00 0.00 0.00 2.92
28 30 2.252260 CAAAACGCAGCAGGACGG 59.748 61.111 0.00 0.00 0.00 4.79
33 35 6.200097 ACTTTATTTTAACCAAAACGCAGCAG 59.800 34.615 0.00 0.00 36.49 4.24
53 57 8.044908 AGAACAACAACACTTCCTCTAACTTTA 58.955 33.333 0.00 0.00 0.00 1.85
214 246 2.421424 CCACAATACTGCTTCAGCCTTC 59.579 50.000 0.00 0.00 41.18 3.46
272 308 1.227793 GGCCTACAGGAGCTGCATC 60.228 63.158 8.35 0.00 37.39 3.91
310 346 3.710209 AGCTGCAAGGATCACTAAACT 57.290 42.857 1.02 0.00 0.00 2.66
311 347 4.773323 AAAGCTGCAAGGATCACTAAAC 57.227 40.909 1.02 0.00 0.00 2.01
349 385 7.758528 AGAAAGCAATTGCAAAAGCTATTCTAG 59.241 33.333 30.89 6.16 39.81 2.43
410 446 4.379652 GTCCATGCAAGGTGACAATTTTT 58.620 39.130 8.03 0.00 0.00 1.94
426 462 9.273016 CTACACCTATTATTGTTTAGGTCCATG 57.727 37.037 0.00 0.00 45.05 3.66
512 557 7.546667 AGAACATATGGAAATTGTGCATCAAAC 59.453 33.333 7.80 2.48 39.36 2.93
515 560 6.778834 AGAACATATGGAAATTGTGCATCA 57.221 33.333 7.80 0.00 39.36 3.07
554 599 7.782049 TCTGTATTCTACGGTTCATGATCTTT 58.218 34.615 0.00 0.00 36.45 2.52
567 637 4.084485 TCGCTCGAAGATCTGTATTCTACG 60.084 45.833 0.00 0.00 33.89 3.51
569 639 4.083749 GCTCGCTCGAAGATCTGTATTCTA 60.084 45.833 0.00 0.00 33.89 2.10
576 646 1.130140 CATGCTCGCTCGAAGATCTG 58.870 55.000 0.00 0.00 33.89 2.90
604 678 2.919859 CGCATTCACACACACACAAAAA 59.080 40.909 0.00 0.00 0.00 1.94
609 683 0.316937 CACCGCATTCACACACACAC 60.317 55.000 0.00 0.00 0.00 3.82
652 727 7.967890 AAAGAATCAAACTTTTAGCCAATGG 57.032 32.000 0.00 0.00 34.50 3.16
655 730 9.442047 TTTCAAAAGAATCAAACTTTTAGCCAA 57.558 25.926 0.00 0.00 42.95 4.52
678 753 3.126343 ACACCAACTGAAACGTGACTTTC 59.874 43.478 0.00 0.00 0.00 2.62
679 754 3.078837 ACACCAACTGAAACGTGACTTT 58.921 40.909 0.00 0.00 0.00 2.66
680 755 2.706890 ACACCAACTGAAACGTGACTT 58.293 42.857 0.00 0.00 0.00 3.01
681 756 2.396590 ACACCAACTGAAACGTGACT 57.603 45.000 0.00 0.00 0.00 3.41
682 757 4.806342 ATTACACCAACTGAAACGTGAC 57.194 40.909 0.00 0.00 0.00 3.67
683 758 4.496673 GCAATTACACCAACTGAAACGTGA 60.497 41.667 0.00 0.00 0.00 4.35
684 759 3.728718 GCAATTACACCAACTGAAACGTG 59.271 43.478 0.00 0.00 0.00 4.49
685 760 3.378742 TGCAATTACACCAACTGAAACGT 59.621 39.130 0.00 0.00 0.00 3.99
686 761 3.958704 TGCAATTACACCAACTGAAACG 58.041 40.909 0.00 0.00 0.00 3.60
687 762 4.685628 CCATGCAATTACACCAACTGAAAC 59.314 41.667 0.00 0.00 0.00 2.78
688 763 4.343526 ACCATGCAATTACACCAACTGAAA 59.656 37.500 0.00 0.00 0.00 2.69
689 764 3.894427 ACCATGCAATTACACCAACTGAA 59.106 39.130 0.00 0.00 0.00 3.02
690 765 3.495331 ACCATGCAATTACACCAACTGA 58.505 40.909 0.00 0.00 0.00 3.41
691 766 3.940209 ACCATGCAATTACACCAACTG 57.060 42.857 0.00 0.00 0.00 3.16
692 767 4.644685 GGATACCATGCAATTACACCAACT 59.355 41.667 0.00 0.00 0.00 3.16
693 768 4.400884 TGGATACCATGCAATTACACCAAC 59.599 41.667 0.00 0.00 0.00 3.77
694 769 4.604156 TGGATACCATGCAATTACACCAA 58.396 39.130 0.00 0.00 0.00 3.67
695 770 4.242336 TGGATACCATGCAATTACACCA 57.758 40.909 0.00 0.00 0.00 4.17
696 771 5.590530 TTTGGATACCATGCAATTACACC 57.409 39.130 0.00 0.00 40.34 4.16
697 772 8.389603 CAATTTTTGGATACCATGCAATTACAC 58.610 33.333 0.00 0.00 40.34 2.90
698 773 8.316946 TCAATTTTTGGATACCATGCAATTACA 58.683 29.630 0.00 0.00 40.34 2.41
699 774 8.715191 TCAATTTTTGGATACCATGCAATTAC 57.285 30.769 0.00 0.00 40.34 1.89
700 775 9.902684 AATCAATTTTTGGATACCATGCAATTA 57.097 25.926 0.00 0.00 40.34 1.40
701 776 8.810990 AATCAATTTTTGGATACCATGCAATT 57.189 26.923 0.00 0.00 40.34 2.32
702 777 7.499895 GGAATCAATTTTTGGATACCATGCAAT 59.500 33.333 0.00 0.00 40.34 3.56
703 778 6.822676 GGAATCAATTTTTGGATACCATGCAA 59.177 34.615 0.00 0.00 38.89 4.08
704 779 6.347696 GGAATCAATTTTTGGATACCATGCA 58.652 36.000 0.00 0.00 31.53 3.96
705 780 5.463061 CGGAATCAATTTTTGGATACCATGC 59.537 40.000 0.00 0.00 31.53 4.06
706 781 5.463061 GCGGAATCAATTTTTGGATACCATG 59.537 40.000 0.00 0.00 31.53 3.66
707 782 5.128499 TGCGGAATCAATTTTTGGATACCAT 59.872 36.000 0.00 0.00 31.53 3.55
708 783 4.464244 TGCGGAATCAATTTTTGGATACCA 59.536 37.500 0.00 0.00 0.00 3.25
709 784 5.004922 TGCGGAATCAATTTTTGGATACC 57.995 39.130 0.00 0.00 0.00 2.73
710 785 5.890334 TCTGCGGAATCAATTTTTGGATAC 58.110 37.500 0.00 0.00 0.00 2.24
711 786 6.522625 TTCTGCGGAATCAATTTTTGGATA 57.477 33.333 3.13 0.00 0.00 2.59
712 787 5.404466 TTCTGCGGAATCAATTTTTGGAT 57.596 34.783 3.13 0.00 0.00 3.41
713 788 4.862902 TTCTGCGGAATCAATTTTTGGA 57.137 36.364 3.13 0.00 0.00 3.53
714 789 4.152223 GGTTTCTGCGGAATCAATTTTTGG 59.848 41.667 9.22 0.00 0.00 3.28
715 790 4.749099 TGGTTTCTGCGGAATCAATTTTTG 59.251 37.500 9.22 0.00 0.00 2.44
716 791 4.954875 TGGTTTCTGCGGAATCAATTTTT 58.045 34.783 9.22 0.00 0.00 1.94
717 792 4.599047 TGGTTTCTGCGGAATCAATTTT 57.401 36.364 9.22 0.00 0.00 1.82
718 793 4.559153 CTTGGTTTCTGCGGAATCAATTT 58.441 39.130 18.71 0.00 30.67 1.82
719 794 3.614870 GCTTGGTTTCTGCGGAATCAATT 60.615 43.478 18.71 0.00 30.67 2.32
720 795 2.094545 GCTTGGTTTCTGCGGAATCAAT 60.095 45.455 18.71 0.00 30.67 2.57
721 796 1.269448 GCTTGGTTTCTGCGGAATCAA 59.731 47.619 9.22 14.87 0.00 2.57
722 797 0.881118 GCTTGGTTTCTGCGGAATCA 59.119 50.000 9.22 8.18 0.00 2.57
723 798 0.179189 CGCTTGGTTTCTGCGGAATC 60.179 55.000 9.22 8.35 45.07 2.52
724 799 1.875963 CGCTTGGTTTCTGCGGAAT 59.124 52.632 9.22 0.00 45.07 3.01
725 800 3.339731 CGCTTGGTTTCTGCGGAA 58.660 55.556 3.13 3.13 45.07 4.30
729 804 1.154469 GTACGCGCTTGGTTTCTGC 60.154 57.895 5.73 0.00 0.00 4.26
730 805 1.129809 CGTACGCGCTTGGTTTCTG 59.870 57.895 5.73 0.00 0.00 3.02
731 806 3.545911 CGTACGCGCTTGGTTTCT 58.454 55.556 5.73 0.00 0.00 2.52
742 817 2.930965 AAACGAACCACGCGTACGC 61.931 57.895 29.83 29.83 46.94 4.42
743 818 1.154980 CAAACGAACCACGCGTACG 60.155 57.895 13.44 17.60 46.94 3.67
744 819 0.111574 GTCAAACGAACCACGCGTAC 60.112 55.000 13.44 0.00 46.94 3.67
745 820 0.248990 AGTCAAACGAACCACGCGTA 60.249 50.000 13.44 0.00 46.94 4.42
746 821 1.519898 AGTCAAACGAACCACGCGT 60.520 52.632 5.58 5.58 46.94 6.01
747 822 1.083657 CAGTCAAACGAACCACGCG 60.084 57.895 3.53 3.53 46.94 6.01
748 823 0.042448 GTCAGTCAAACGAACCACGC 60.042 55.000 0.00 0.00 46.94 5.34
750 825 2.822764 AGAGTCAGTCAAACGAACCAC 58.177 47.619 0.00 0.00 0.00 4.16
751 826 3.454375 GAAGAGTCAGTCAAACGAACCA 58.546 45.455 0.00 0.00 0.00 3.67
752 827 2.801111 GGAAGAGTCAGTCAAACGAACC 59.199 50.000 0.00 0.00 0.00 3.62
753 828 3.245519 GTGGAAGAGTCAGTCAAACGAAC 59.754 47.826 0.00 0.00 0.00 3.95
754 829 3.132289 AGTGGAAGAGTCAGTCAAACGAA 59.868 43.478 0.00 0.00 0.00 3.85
755 830 2.693591 AGTGGAAGAGTCAGTCAAACGA 59.306 45.455 0.00 0.00 0.00 3.85
756 831 3.099267 AGTGGAAGAGTCAGTCAAACG 57.901 47.619 0.00 0.00 0.00 3.60
757 832 3.982058 CGTAGTGGAAGAGTCAGTCAAAC 59.018 47.826 0.00 0.00 0.00 2.93
758 833 3.887110 TCGTAGTGGAAGAGTCAGTCAAA 59.113 43.478 0.00 0.00 0.00 2.69
759 834 3.483421 TCGTAGTGGAAGAGTCAGTCAA 58.517 45.455 0.00 0.00 0.00 3.18
760 835 3.075148 CTCGTAGTGGAAGAGTCAGTCA 58.925 50.000 0.00 0.00 0.00 3.41
761 836 2.420722 CCTCGTAGTGGAAGAGTCAGTC 59.579 54.545 0.00 0.00 45.27 3.51
762 837 2.438411 CCTCGTAGTGGAAGAGTCAGT 58.562 52.381 0.00 0.00 45.27 3.41
772 847 2.557056 TGTGAAGTCTTCCTCGTAGTGG 59.443 50.000 10.12 0.00 43.52 4.00
773 848 3.253677 AGTGTGAAGTCTTCCTCGTAGTG 59.746 47.826 10.12 0.00 0.00 2.74
774 849 3.488363 AGTGTGAAGTCTTCCTCGTAGT 58.512 45.455 10.12 0.00 0.00 2.73
775 850 4.230657 CAAGTGTGAAGTCTTCCTCGTAG 58.769 47.826 10.12 0.00 0.00 3.51
776 851 3.005472 CCAAGTGTGAAGTCTTCCTCGTA 59.995 47.826 10.12 0.00 0.00 3.43
777 852 2.224066 CCAAGTGTGAAGTCTTCCTCGT 60.224 50.000 10.12 0.00 0.00 4.18
778 853 2.035961 TCCAAGTGTGAAGTCTTCCTCG 59.964 50.000 10.12 0.00 0.00 4.63
779 854 3.753294 TCCAAGTGTGAAGTCTTCCTC 57.247 47.619 10.12 4.36 0.00 3.71
780 855 3.711704 TCTTCCAAGTGTGAAGTCTTCCT 59.288 43.478 10.12 0.00 40.10 3.36
781 856 3.810386 GTCTTCCAAGTGTGAAGTCTTCC 59.190 47.826 10.12 2.58 40.10 3.46
782 857 4.698575 AGTCTTCCAAGTGTGAAGTCTTC 58.301 43.478 5.58 5.58 40.10 2.87
783 858 4.698575 GAGTCTTCCAAGTGTGAAGTCTT 58.301 43.478 0.00 0.00 38.01 3.01
784 859 3.243569 CGAGTCTTCCAAGTGTGAAGTCT 60.244 47.826 0.00 0.00 39.70 3.24
785 860 3.053455 CGAGTCTTCCAAGTGTGAAGTC 58.947 50.000 0.00 0.00 40.10 3.01
786 861 2.693591 TCGAGTCTTCCAAGTGTGAAGT 59.306 45.455 0.00 0.00 40.10 3.01
787 862 3.243569 ACTCGAGTCTTCCAAGTGTGAAG 60.244 47.826 13.58 0.00 40.45 3.02
788 863 2.693591 ACTCGAGTCTTCCAAGTGTGAA 59.306 45.455 13.58 0.00 0.00 3.18
789 864 2.307768 ACTCGAGTCTTCCAAGTGTGA 58.692 47.619 13.58 0.00 0.00 3.58
790 865 2.802787 ACTCGAGTCTTCCAAGTGTG 57.197 50.000 13.58 0.00 0.00 3.82
791 866 3.890147 ACTAACTCGAGTCTTCCAAGTGT 59.110 43.478 20.33 1.01 0.00 3.55
792 867 4.477780 GACTAACTCGAGTCTTCCAAGTG 58.522 47.826 20.33 4.18 42.26 3.16
793 868 4.769859 GACTAACTCGAGTCTTCCAAGT 57.230 45.455 20.33 14.53 42.26 3.16
806 881 7.492994 AGTTCAAGTGTTTTCTGAGACTAACTC 59.507 37.037 7.78 5.00 45.11 3.01
807 882 7.331791 AGTTCAAGTGTTTTCTGAGACTAACT 58.668 34.615 7.78 0.00 0.00 2.24
808 883 7.254488 GGAGTTCAAGTGTTTTCTGAGACTAAC 60.254 40.741 0.96 0.96 0.00 2.34
809 884 6.761714 GGAGTTCAAGTGTTTTCTGAGACTAA 59.238 38.462 0.00 0.00 0.00 2.24
810 885 6.281405 GGAGTTCAAGTGTTTTCTGAGACTA 58.719 40.000 0.00 0.00 0.00 2.59
811 886 5.119694 GGAGTTCAAGTGTTTTCTGAGACT 58.880 41.667 0.00 0.00 0.00 3.24
812 887 4.273724 GGGAGTTCAAGTGTTTTCTGAGAC 59.726 45.833 0.00 0.00 0.00 3.36
813 888 4.164221 AGGGAGTTCAAGTGTTTTCTGAGA 59.836 41.667 0.00 0.00 0.00 3.27
814 889 4.455606 AGGGAGTTCAAGTGTTTTCTGAG 58.544 43.478 0.00 0.00 0.00 3.35
815 890 4.503714 AGGGAGTTCAAGTGTTTTCTGA 57.496 40.909 0.00 0.00 0.00 3.27
816 891 4.640201 TCAAGGGAGTTCAAGTGTTTTCTG 59.360 41.667 0.00 0.00 0.00 3.02
817 892 4.855340 TCAAGGGAGTTCAAGTGTTTTCT 58.145 39.130 0.00 0.00 0.00 2.52
818 893 4.881850 TCTCAAGGGAGTTCAAGTGTTTTC 59.118 41.667 0.00 0.00 42.05 2.29
819 894 4.855340 TCTCAAGGGAGTTCAAGTGTTTT 58.145 39.130 0.00 0.00 42.05 2.43
820 895 4.164221 TCTCTCAAGGGAGTTCAAGTGTTT 59.836 41.667 0.00 0.00 42.05 2.83
821 896 3.711704 TCTCTCAAGGGAGTTCAAGTGTT 59.288 43.478 0.00 0.00 42.05 3.32
822 897 3.309296 TCTCTCAAGGGAGTTCAAGTGT 58.691 45.455 0.00 0.00 42.05 3.55
823 898 3.576118 TCTCTCTCAAGGGAGTTCAAGTG 59.424 47.826 6.79 0.00 42.05 3.16
824 899 3.831911 CTCTCTCTCAAGGGAGTTCAAGT 59.168 47.826 6.79 0.00 44.04 3.16
825 900 4.454728 CTCTCTCTCAAGGGAGTTCAAG 57.545 50.000 6.79 0.00 44.04 3.02
832 907 4.202620 TGAAGTCTTCTCTCTCTCAAGGGA 60.203 45.833 13.67 0.00 0.00 4.20
833 908 4.085733 TGAAGTCTTCTCTCTCTCAAGGG 58.914 47.826 13.67 0.00 0.00 3.95
834 909 5.418524 TGATGAAGTCTTCTCTCTCTCAAGG 59.581 44.000 13.67 0.00 0.00 3.61
835 910 6.513806 TGATGAAGTCTTCTCTCTCTCAAG 57.486 41.667 13.67 0.00 0.00 3.02
836 911 7.178097 TCAATGATGAAGTCTTCTCTCTCTCAA 59.822 37.037 13.67 0.00 30.99 3.02
837 912 6.662663 TCAATGATGAAGTCTTCTCTCTCTCA 59.337 38.462 13.67 7.34 30.99 3.27
838 913 6.974622 GTCAATGATGAAGTCTTCTCTCTCTC 59.025 42.308 13.67 2.65 37.30 3.20
839 914 6.664816 AGTCAATGATGAAGTCTTCTCTCTCT 59.335 38.462 13.67 0.71 37.30 3.10
840 915 6.866480 AGTCAATGATGAAGTCTTCTCTCTC 58.134 40.000 13.67 6.22 37.30 3.20
841 916 6.855763 AGTCAATGATGAAGTCTTCTCTCT 57.144 37.500 13.67 0.00 37.30 3.10
842 917 7.063308 GTGAAGTCAATGATGAAGTCTTCTCTC 59.937 40.741 13.67 10.50 37.22 3.20
843 918 6.873076 GTGAAGTCAATGATGAAGTCTTCTCT 59.127 38.462 13.67 1.41 37.22 3.10
844 919 6.648310 TGTGAAGTCAATGATGAAGTCTTCTC 59.352 38.462 13.67 9.03 37.22 2.87
845 920 6.426328 GTGTGAAGTCAATGATGAAGTCTTCT 59.574 38.462 13.67 0.00 37.22 2.85
846 921 6.597614 GTGTGAAGTCAATGATGAAGTCTTC 58.402 40.000 5.58 5.58 37.01 2.87
847 922 5.178252 CGTGTGAAGTCAATGATGAAGTCTT 59.822 40.000 0.00 0.00 37.30 3.01
848 923 4.687948 CGTGTGAAGTCAATGATGAAGTCT 59.312 41.667 0.00 0.00 37.30 3.24
849 924 4.449068 ACGTGTGAAGTCAATGATGAAGTC 59.551 41.667 0.00 0.00 37.30 3.01
850 925 4.380531 ACGTGTGAAGTCAATGATGAAGT 58.619 39.130 0.00 0.00 37.30 3.01
851 926 4.997905 ACGTGTGAAGTCAATGATGAAG 57.002 40.909 0.00 0.00 37.30 3.02
852 927 5.065859 ACAAACGTGTGAAGTCAATGATGAA 59.934 36.000 13.99 0.00 35.14 2.57
853 928 4.574421 ACAAACGTGTGAAGTCAATGATGA 59.426 37.500 13.99 0.00 36.31 2.92
854 929 4.847633 ACAAACGTGTGAAGTCAATGATG 58.152 39.130 13.99 0.00 36.31 3.07
855 930 5.273170 CAACAAACGTGTGAAGTCAATGAT 58.727 37.500 13.99 0.00 38.27 2.45
856 931 4.657055 CAACAAACGTGTGAAGTCAATGA 58.343 39.130 13.99 0.00 38.27 2.57
857 932 3.240401 GCAACAAACGTGTGAAGTCAATG 59.760 43.478 13.99 1.13 38.27 2.82
858 933 3.434637 GCAACAAACGTGTGAAGTCAAT 58.565 40.909 13.99 0.00 38.27 2.57
859 934 2.726373 CGCAACAAACGTGTGAAGTCAA 60.726 45.455 13.99 0.00 38.27 3.18
860 935 1.201976 CGCAACAAACGTGTGAAGTCA 60.202 47.619 13.99 0.00 38.27 3.41
861 936 1.061421 TCGCAACAAACGTGTGAAGTC 59.939 47.619 13.99 0.00 38.27 3.01
862 937 1.080298 TCGCAACAAACGTGTGAAGT 58.920 45.000 13.99 0.00 38.27 3.01
863 938 2.166741 TTCGCAACAAACGTGTGAAG 57.833 45.000 13.99 5.26 39.82 3.02
864 939 1.732809 TCTTCGCAACAAACGTGTGAA 59.267 42.857 13.99 5.76 41.82 3.18
865 940 1.061421 GTCTTCGCAACAAACGTGTGA 59.939 47.619 13.99 0.00 38.27 3.58
866 941 1.062002 AGTCTTCGCAACAAACGTGTG 59.938 47.619 3.56 3.56 38.27 3.82
867 942 1.326548 GAGTCTTCGCAACAAACGTGT 59.673 47.619 0.00 0.00 40.75 4.49
868 943 1.326245 TGAGTCTTCGCAACAAACGTG 59.674 47.619 0.00 0.00 0.00 4.49
869 944 1.647346 TGAGTCTTCGCAACAAACGT 58.353 45.000 0.00 0.00 0.00 3.99
870 945 2.030457 ACTTGAGTCTTCGCAACAAACG 59.970 45.455 0.00 0.00 30.83 3.60
871 946 3.608456 GACTTGAGTCTTCGCAACAAAC 58.392 45.455 3.93 0.00 41.65 2.93
872 947 3.944422 GACTTGAGTCTTCGCAACAAA 57.056 42.857 3.93 0.00 41.65 2.83
909 984 0.234884 GAGTCCTTTTCCACGCGTTG 59.765 55.000 10.22 6.47 0.00 4.10
922 997 1.953311 GCGAGAGGAGTCTTGAGTCCT 60.953 57.143 22.83 22.83 46.46 3.85
929 1004 8.086143 ACTATATATAGAGCGAGAGGAGTCTT 57.914 38.462 23.70 0.00 34.50 3.01
933 1008 8.418662 ACTGTACTATATATAGAGCGAGAGGAG 58.581 40.741 23.70 11.00 34.50 3.69
957 1032 3.511477 ACATAAGACTGGTCAGGTGACT 58.489 45.455 9.90 0.00 44.20 3.41
958 1033 3.963428 ACATAAGACTGGTCAGGTGAC 57.037 47.619 1.17 1.17 44.04 3.67
959 1034 4.412843 TGTACATAAGACTGGTCAGGTGA 58.587 43.478 3.51 0.00 0.00 4.02
960 1035 4.801330 TGTACATAAGACTGGTCAGGTG 57.199 45.455 3.51 1.65 0.00 4.00
966 1041 6.420913 AGTGAACTTGTACATAAGACTGGT 57.579 37.500 0.00 0.00 0.00 4.00
975 1050 8.821147 TTAAACGTGATAGTGAACTTGTACAT 57.179 30.769 0.00 0.00 0.00 2.29
976 1051 8.705134 CATTAAACGTGATAGTGAACTTGTACA 58.295 33.333 0.00 0.00 0.00 2.90
979 1054 6.348213 GCCATTAAACGTGATAGTGAACTTGT 60.348 38.462 0.00 0.00 0.00 3.16
980 1055 6.021596 GCCATTAAACGTGATAGTGAACTTG 58.978 40.000 0.00 0.00 0.00 3.16
981 1056 5.163893 CGCCATTAAACGTGATAGTGAACTT 60.164 40.000 0.00 0.00 0.00 2.66
1044 1119 1.198713 TGATGAAGCTGGAGACCCTC 58.801 55.000 0.00 0.00 0.00 4.30
1048 1123 2.159184 TGTCGATGATGAAGCTGGAGAC 60.159 50.000 0.00 0.00 0.00 3.36
1328 1500 0.881796 AGATGACACGAGCGACTTGA 59.118 50.000 0.00 0.00 0.00 3.02
1668 1840 3.134792 ACGTCGCTGCTCTCGGAT 61.135 61.111 0.00 0.00 0.00 4.18
1821 3170 4.784177 TGTGTATATCGACCCAGTACTCA 58.216 43.478 0.00 0.00 0.00 3.41
1857 3206 2.047179 GGGTCTGGACGAAGGCAC 60.047 66.667 0.00 0.00 0.00 5.01
1896 3245 0.953471 TGGAAGGCACGATGAAACCG 60.953 55.000 0.00 0.00 0.00 4.44
1898 3247 0.521735 GGTGGAAGGCACGATGAAAC 59.478 55.000 0.00 0.00 0.00 2.78
1900 3249 0.321564 CAGGTGGAAGGCACGATGAA 60.322 55.000 0.00 0.00 0.00 2.57
1901 3250 1.296392 CAGGTGGAAGGCACGATGA 59.704 57.895 0.00 0.00 0.00 2.92
1908 3257 1.746991 GCTGCTACAGGTGGAAGGC 60.747 63.158 0.00 0.00 31.21 4.35
1939 3288 0.451783 GGTGACAACGATGATTGCCC 59.548 55.000 0.00 0.00 32.47 5.36
1972 3321 1.009675 GAAACAGTGTGCACGCCAG 60.010 57.895 26.13 20.68 36.20 4.85
2013 3362 0.520404 GCGAGATATGGCATTGCAGG 59.480 55.000 4.78 0.00 0.00 4.85
2064 3413 4.873010 TCACATAGCTTCTTCTACTCCCT 58.127 43.478 0.00 0.00 0.00 4.20
2081 3430 4.956075 ACTTCAAACCTGGAGTTTTCACAT 59.044 37.500 0.00 0.00 46.79 3.21
2083 3432 4.983671 ACTTCAAACCTGGAGTTTTCAC 57.016 40.909 0.00 0.00 46.79 3.18
2098 3447 5.738118 ATAAAAACGACCGACAACTTCAA 57.262 34.783 0.00 0.00 0.00 2.69
2104 3704 2.813172 GGGGAATAAAAACGACCGACAA 59.187 45.455 0.00 0.00 0.00 3.18
2188 4983 1.079057 GGACCGTTTCCTGCTCCTC 60.079 63.158 0.00 0.00 41.95 3.71
2196 4991 1.202143 GCATTTCGATGGACCGTTTCC 60.202 52.381 0.00 0.00 46.13 3.13
2232 5027 2.185608 GGGAGCAGCTTCTCGTCC 59.814 66.667 7.31 0.22 33.98 4.79
2275 5073 3.389329 AGCTGATACATCTTGGATTCGGT 59.611 43.478 0.00 0.00 0.00 4.69
2304 5102 2.753043 GTGCCATGCCTGGACCTG 60.753 66.667 12.80 0.00 46.37 4.00
2397 5195 5.183713 CACCACTCTTTTGCTTCCATTGATA 59.816 40.000 0.00 0.00 0.00 2.15
2415 5213 2.095978 CTCGTTTCCGGTCCACCACT 62.096 60.000 0.00 0.00 35.14 4.00
2424 5222 2.426024 TCTGTAATCCTCTCGTTTCCGG 59.574 50.000 0.00 0.00 33.95 5.14
2502 5541 2.675056 GCCGTGCAGCTTGTCAGAG 61.675 63.158 0.00 0.00 0.00 3.35
2550 5828 1.418334 GGAGGGATTAGCTCTGCAGA 58.582 55.000 17.19 17.19 35.14 4.26
2582 5860 7.013750 CAGTGTGCCTACTAGATGAAGAGATTA 59.986 40.741 0.00 0.00 0.00 1.75
2608 5886 2.178106 TCCTAGACCAGAGATTCTCCCC 59.822 54.545 10.09 0.00 0.00 4.81
2609 5887 3.603965 TCCTAGACCAGAGATTCTCCC 57.396 52.381 10.09 0.00 0.00 4.30
2615 5893 5.128663 GCTTTCTTCTTCCTAGACCAGAGAT 59.871 44.000 0.00 0.00 0.00 2.75
2616 5894 4.464597 GCTTTCTTCTTCCTAGACCAGAGA 59.535 45.833 0.00 0.00 0.00 3.10
2617 5895 4.221703 TGCTTTCTTCTTCCTAGACCAGAG 59.778 45.833 0.00 0.00 0.00 3.35
2621 5899 4.693095 CACTTGCTTTCTTCTTCCTAGACC 59.307 45.833 0.00 0.00 0.00 3.85
2630 5908 8.470002 ACAGAATTTTTACACTTGCTTTCTTCT 58.530 29.630 0.00 0.00 0.00 2.85
2642 5920 4.083484 CCCGTCTCCACAGAATTTTTACAC 60.083 45.833 0.00 0.00 0.00 2.90
2646 5924 3.223674 ACCCGTCTCCACAGAATTTTT 57.776 42.857 0.00 0.00 0.00 1.94
2647 5925 2.951229 ACCCGTCTCCACAGAATTTT 57.049 45.000 0.00 0.00 0.00 1.82
2648 5926 2.951229 AACCCGTCTCCACAGAATTT 57.049 45.000 0.00 0.00 0.00 1.82
2649 5927 2.951229 AAACCCGTCTCCACAGAATT 57.049 45.000 0.00 0.00 0.00 2.17
2650 5928 2.951229 AAAACCCGTCTCCACAGAAT 57.049 45.000 0.00 0.00 0.00 2.40
2651 5929 2.721425 AAAAACCCGTCTCCACAGAA 57.279 45.000 0.00 0.00 0.00 3.02
3243 7808 9.556030 CCGAAATTACCTTTATCTTTCTTTGAC 57.444 33.333 0.00 0.00 0.00 3.18
3322 7887 9.404848 TGAGAGCATTGATCATCTATTCTTTTT 57.595 29.630 4.52 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.