Multiple sequence alignment - TraesCS3A01G051800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G051800 chr3A 100.000 4292 0 0 1 4292 27592758 27588467 0.000000e+00 7926.0
1 TraesCS3A01G051800 chr3A 95.439 592 24 3 57 647 27599778 27599189 0.000000e+00 941.0
2 TraesCS3A01G051800 chr3A 94.147 598 28 5 57 647 27598860 27598263 0.000000e+00 904.0
3 TraesCS3A01G051800 chr3A 90.735 313 19 7 336 647 27600410 27600107 4.000000e-110 409.0
4 TraesCS3A01G051800 chr3A 91.606 274 22 1 57 330 27608234 27607962 1.130000e-100 377.0
5 TraesCS3A01G051800 chr3A 88.732 284 29 3 151 431 27625489 27625206 1.140000e-90 344.0
6 TraesCS3A01G051800 chr3A 88.506 87 4 5 1 86 542763150 542763231 2.730000e-17 100.0
7 TraesCS3A01G051800 chr3A 100.000 49 0 0 4072 4120 568158811 568158859 1.640000e-14 91.6
8 TraesCS3A01G051800 chr3D 94.509 3278 95 35 851 4073 19962283 19959036 0.000000e+00 4977.0
9 TraesCS3A01G051800 chr3D 88.889 594 50 10 57 647 19963392 19962812 0.000000e+00 717.0
10 TraesCS3A01G051800 chr3D 88.377 499 39 8 151 647 19964216 19963735 2.220000e-162 582.0
11 TraesCS3A01G051800 chr3D 94.643 112 6 0 4158 4269 542181696 542181807 1.590000e-39 174.0
12 TraesCS3A01G051800 chr3D 91.667 120 5 1 4155 4269 19959053 19958934 1.240000e-35 161.0
13 TraesCS3A01G051800 chr3D 100.000 49 0 0 4072 4120 535873764 535873716 1.640000e-14 91.6
14 TraesCS3A01G051800 chr3D 100.000 41 0 0 3730 3770 542181660 542181700 4.600000e-10 76.8
15 TraesCS3A01G051800 chr3B 94.354 3011 112 23 1051 4017 32288072 32285076 0.000000e+00 4566.0
16 TraesCS3A01G051800 chr3B 90.219 593 55 3 57 647 32338428 32337837 0.000000e+00 771.0
17 TraesCS3A01G051800 chr3B 87.690 593 69 4 57 647 32337242 32336652 0.000000e+00 688.0
18 TraesCS3A01G051800 chr3B 86.296 467 45 5 183 647 32293251 32292802 1.390000e-134 490.0
19 TraesCS3A01G051800 chr3B 90.489 368 33 2 57 423 32290556 32290190 6.450000e-133 484.0
20 TraesCS3A01G051800 chr3B 85.867 467 47 6 183 647 32341122 32340673 3.000000e-131 479.0
21 TraesCS3A01G051800 chr3B 79.795 292 31 21 685 962 32288547 32288270 2.040000e-43 187.0
22 TraesCS3A01G051800 chr3B 84.354 147 10 3 4158 4291 32285052 32284906 9.680000e-27 132.0
23 TraesCS3A01G051800 chr3B 79.661 177 24 6 672 843 32338656 32338487 2.710000e-22 117.0
24 TraesCS3A01G051800 chr3B 100.000 51 0 0 4070 4120 19824799 19824849 1.270000e-15 95.3
25 TraesCS3A01G051800 chr3B 100.000 28 0 0 4131 4158 575502175 575502148 8.000000e-03 52.8
26 TraesCS3A01G051800 chr5B 90.596 638 51 3 1194 1831 666071299 666071927 0.000000e+00 837.0
27 TraesCS3A01G051800 chr5B 100.000 49 0 0 4072 4120 460675370 460675322 1.640000e-14 91.6
28 TraesCS3A01G051800 chr4A 94.690 452 19 3 3626 4073 177857988 177857538 0.000000e+00 697.0
29 TraesCS3A01G051800 chr4A 93.220 118 8 0 4155 4272 177857555 177857438 1.590000e-39 174.0
30 TraesCS3A01G051800 chr4A 90.789 76 1 5 3 78 736165005 736164936 3.530000e-16 97.1
31 TraesCS3A01G051800 chr2B 88.514 296 27 2 1562 1857 82960450 82960738 6.830000e-93 351.0
32 TraesCS3A01G051800 chr2B 95.385 65 3 0 3 67 80157689 80157625 2.110000e-18 104.0
33 TraesCS3A01G051800 chr2B 100.000 28 0 0 4131 4158 572157317 572157290 8.000000e-03 52.8
34 TraesCS3A01G051800 chr6A 87.629 291 30 1 1562 1852 226333801 226334085 2.470000e-87 333.0
35 TraesCS3A01G051800 chr7D 93.043 115 8 0 4158 4272 273497154 273497040 7.380000e-38 169.0
36 TraesCS3A01G051800 chr7D 92.174 115 9 0 4158 4272 555859511 555859397 3.430000e-36 163.0
37 TraesCS3A01G051800 chr7D 91.304 115 10 0 4158 4272 278468740 278468626 1.600000e-34 158.0
38 TraesCS3A01G051800 chr7D 100.000 41 0 0 3730 3770 273497190 273497150 4.600000e-10 76.8
39 TraesCS3A01G051800 chr7D 100.000 41 0 0 3730 3770 278468776 278468736 4.600000e-10 76.8
40 TraesCS3A01G051800 chr7D 100.000 41 0 0 3730 3770 555859547 555859507 4.600000e-10 76.8
41 TraesCS3A01G051800 chr7A 92.373 118 9 0 4155 4272 334913142 334913025 7.380000e-38 169.0
42 TraesCS3A01G051800 chr7A 91.089 101 9 0 4172 4272 625120192 625120092 2.080000e-28 137.0
43 TraesCS3A01G051800 chr5A 87.218 133 7 4 4169 4291 314223604 314223736 4.470000e-30 143.0
44 TraesCS3A01G051800 chr5A 85.227 88 13 0 7 94 513021988 513021901 1.640000e-14 91.6
45 TraesCS3A01G051800 chr6B 96.923 65 2 0 3 67 117144182 117144246 4.540000e-20 110.0
46 TraesCS3A01G051800 chr6B 100.000 49 0 0 4072 4120 129755963 129755915 1.640000e-14 91.6
47 TraesCS3A01G051800 chr6B 100.000 29 0 0 4131 4159 225881386 225881358 2.000000e-03 54.7
48 TraesCS3A01G051800 chr6D 90.789 76 5 2 3 77 175314382 175314308 2.730000e-17 100.0
49 TraesCS3A01G051800 chr6D 98.039 51 1 0 4070 4120 464848564 464848614 5.910000e-14 89.8
50 TraesCS3A01G051800 chr1A 88.506 87 5 5 3 88 52169603 52169685 2.730000e-17 100.0
51 TraesCS3A01G051800 chr1A 87.059 85 7 3 3 87 285833888 285833808 4.570000e-15 93.5
52 TraesCS3A01G051800 chr1A 98.039 51 1 0 4074 4124 257769196 257769246 5.910000e-14 89.8
53 TraesCS3A01G051800 chr2D 88.889 81 5 4 3 83 499302099 499302175 3.530000e-16 97.1
54 TraesCS3A01G051800 chr4B 93.103 58 4 0 4063 4120 210779278 210779221 7.650000e-13 86.1
55 TraesCS3A01G051800 chr4B 93.103 58 4 0 4063 4120 210781262 210781205 7.650000e-13 86.1
56 TraesCS3A01G051800 chr4B 100.000 28 0 0 4131 4158 390331613 390331640 8.000000e-03 52.8
57 TraesCS3A01G051800 chr7B 100.000 28 0 0 4131 4158 539652608 539652635 8.000000e-03 52.8
58 TraesCS3A01G051800 chr5D 100.000 28 0 0 755 782 434919602 434919575 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G051800 chr3A 27588467 27592758 4291 True 7926.000000 7926 100.000000 1 4292 1 chr3A.!!$R1 4291
1 TraesCS3A01G051800 chr3A 27598263 27600410 2147 True 751.333333 941 93.440333 57 647 3 chr3A.!!$R4 590
2 TraesCS3A01G051800 chr3D 19958934 19964216 5282 True 1609.250000 4977 90.860500 57 4269 4 chr3D.!!$R2 4212
3 TraesCS3A01G051800 chr3B 32284906 32293251 8345 True 1171.800000 4566 87.057600 57 4291 5 chr3B.!!$R2 4234
4 TraesCS3A01G051800 chr3B 32336652 32341122 4470 True 513.750000 771 85.859250 57 843 4 chr3B.!!$R3 786
5 TraesCS3A01G051800 chr5B 666071299 666071927 628 False 837.000000 837 90.596000 1194 1831 1 chr5B.!!$F1 637
6 TraesCS3A01G051800 chr4A 177857438 177857988 550 True 435.500000 697 93.955000 3626 4272 2 chr4A.!!$R2 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 4952 0.038251 TGGCGTGACAGCAGTAGAAG 60.038 55.0 2.32 0.0 39.27 2.85 F
2265 6692 0.249398 ATTAACGGAGTGCTCGCCTT 59.751 50.0 6.97 3.4 45.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 6940 0.806868 GCTGCTGTAATTGCTGCTGA 59.193 50.0 26.58 9.83 46.79 4.26 R
3581 8039 0.110486 TTCACAGGCCTTCCTTCCAC 59.890 55.0 0.00 0.00 41.93 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.300286 CCTTTAGGGCATATTTCCTTCAGTG 59.700 44.000 0.00 0.00 34.75 3.66
59 60 3.303351 AGGGCATATTTCCTTCAGTGG 57.697 47.619 0.00 0.00 0.00 4.00
60 61 1.683385 GGGCATATTTCCTTCAGTGGC 59.317 52.381 0.00 0.00 0.00 5.01
133 2834 1.795768 CCGTGTGTCACAGCTGTATT 58.204 50.000 21.20 0.00 33.40 1.89
414 4312 7.251994 TCACAAAATGTTAGCGTTTGTAAACT 58.748 30.769 9.74 0.00 36.77 2.66
487 4389 9.416058 ACGTTTTTCTTTTTGCGATTTTATTTC 57.584 25.926 0.00 0.00 0.00 2.17
573 4476 2.287103 GGCTTCCGTCCGCTTTATAAAG 59.713 50.000 19.08 19.08 39.03 1.85
589 4492 8.606727 CTTTATAAAGAAAGCACGATTTCCAG 57.393 34.615 18.69 0.00 39.53 3.86
610 4513 2.952310 GGTCATCATCCAGGCTAAAACC 59.048 50.000 0.00 0.00 0.00 3.27
655 4583 6.660094 TGACAACTAATTTGGGGTACAATACC 59.340 38.462 0.00 0.00 42.25 2.73
704 4929 2.049526 CGTGGCGTGACAGCAGTA 60.050 61.111 2.32 0.00 39.27 2.74
705 4930 2.088763 CGTGGCGTGACAGCAGTAG 61.089 63.158 2.32 0.00 39.27 2.57
708 4952 0.038251 TGGCGTGACAGCAGTAGAAG 60.038 55.000 2.32 0.00 39.27 2.85
760 5008 0.320771 CAGCTGTGTACACCCAGACC 60.321 60.000 22.91 3.68 0.00 3.85
765 5013 0.320697 GTGTACACCCAGACCAGACC 59.679 60.000 15.42 0.00 0.00 3.85
769 5017 1.122019 ACACCCAGACCAGACCAGAC 61.122 60.000 0.00 0.00 0.00 3.51
772 5020 1.548357 CCCAGACCAGACCAGACCAG 61.548 65.000 0.00 0.00 0.00 4.00
774 5022 0.605589 CAGACCAGACCAGACCAGAC 59.394 60.000 0.00 0.00 0.00 3.51
775 5023 0.543174 AGACCAGACCAGACCAGACC 60.543 60.000 0.00 0.00 0.00 3.85
776 5024 0.832135 GACCAGACCAGACCAGACCA 60.832 60.000 0.00 0.00 0.00 4.02
777 5025 0.833834 ACCAGACCAGACCAGACCAG 60.834 60.000 0.00 0.00 0.00 4.00
779 5027 1.566211 CAGACCAGACCAGACCAGAT 58.434 55.000 0.00 0.00 0.00 2.90
782 5030 1.205893 GACCAGACCAGACCAGATCAC 59.794 57.143 0.00 0.00 0.00 3.06
783 5031 1.269958 CCAGACCAGACCAGATCACA 58.730 55.000 0.00 0.00 0.00 3.58
784 5032 1.206610 CCAGACCAGACCAGATCACAG 59.793 57.143 0.00 0.00 0.00 3.66
868 5147 0.725133 TCCCCATCTTTCCCCTCTCT 59.275 55.000 0.00 0.00 0.00 3.10
977 5256 3.793060 GATCCATCGATCCCCCGT 58.207 61.111 0.00 0.00 39.29 5.28
981 5260 2.842462 CATCGATCCCCCGTCCCA 60.842 66.667 0.00 0.00 0.00 4.37
982 5261 2.204319 ATCGATCCCCCGTCCCAT 59.796 61.111 0.00 0.00 0.00 4.00
1047 5344 3.525545 GGCTACCCGGAGTCGACC 61.526 72.222 13.01 3.55 39.00 4.79
1980 6402 1.966493 GATATATGCAACCGCCGCCG 61.966 60.000 0.00 0.00 37.32 6.46
2173 6596 7.112984 CGCAATTTTCACCTTGTTCTTAGTTAC 59.887 37.037 0.00 0.00 0.00 2.50
2227 6654 7.472334 AACTGATGATTGCCATTAGAAAAGT 57.528 32.000 0.00 0.00 40.26 2.66
2264 6691 0.460284 CATTAACGGAGTGCTCGCCT 60.460 55.000 6.97 0.00 45.00 5.52
2265 6692 0.249398 ATTAACGGAGTGCTCGCCTT 59.751 50.000 6.97 3.40 45.00 4.35
2266 6693 0.669318 TTAACGGAGTGCTCGCCTTG 60.669 55.000 6.97 0.00 45.00 3.61
2267 6694 1.812686 TAACGGAGTGCTCGCCTTGT 61.813 55.000 6.97 0.00 45.00 3.16
2270 6697 1.576421 GGAGTGCTCGCCTTGTTTG 59.424 57.895 0.85 0.00 0.00 2.93
2271 6698 0.884704 GGAGTGCTCGCCTTGTTTGA 60.885 55.000 0.85 0.00 0.00 2.69
2272 6699 1.160137 GAGTGCTCGCCTTGTTTGAT 58.840 50.000 0.00 0.00 0.00 2.57
2273 6700 0.877071 AGTGCTCGCCTTGTTTGATG 59.123 50.000 0.00 0.00 0.00 3.07
2274 6701 0.874390 GTGCTCGCCTTGTTTGATGA 59.126 50.000 0.00 0.00 0.00 2.92
2275 6702 1.470098 GTGCTCGCCTTGTTTGATGAT 59.530 47.619 0.00 0.00 0.00 2.45
2276 6703 1.739466 TGCTCGCCTTGTTTGATGATC 59.261 47.619 0.00 0.00 0.00 2.92
2277 6704 1.267732 GCTCGCCTTGTTTGATGATCG 60.268 52.381 0.00 0.00 0.00 3.69
2278 6705 2.002586 CTCGCCTTGTTTGATGATCGT 58.997 47.619 0.00 0.00 0.00 3.73
2279 6706 1.731709 TCGCCTTGTTTGATGATCGTG 59.268 47.619 0.00 0.00 0.00 4.35
2280 6707 1.731709 CGCCTTGTTTGATGATCGTGA 59.268 47.619 0.00 0.00 0.00 4.35
2281 6708 2.222886 CGCCTTGTTTGATGATCGTGAG 60.223 50.000 0.00 0.00 0.00 3.51
2282 6709 2.096496 GCCTTGTTTGATGATCGTGAGG 59.904 50.000 0.00 0.00 0.00 3.86
2285 6712 3.961480 TGTTTGATGATCGTGAGGACT 57.039 42.857 0.00 0.00 0.00 3.85
2508 6940 1.302832 GCAGTTACAGCAGCCACCT 60.303 57.895 0.00 0.00 0.00 4.00
2673 7129 4.695231 CAGCCGCAGCAAGCACAC 62.695 66.667 7.15 0.00 46.13 3.82
2703 7159 1.372582 CACAGCAATATGTCACCGCT 58.627 50.000 0.00 0.00 0.00 5.52
2895 7351 0.464373 ATACCATTCCTGCTGGTGCG 60.464 55.000 9.73 0.00 46.41 5.34
2988 7444 1.330234 TGAAGCCTGAATTGCAGCAA 58.670 45.000 11.07 11.07 43.50 3.91
3043 7499 2.656069 GCTCCAGGGCCTAACACGA 61.656 63.158 5.28 0.00 0.00 4.35
3300 7756 2.238646 TGGTGGTTCATAGCGAAGGATT 59.761 45.455 0.00 0.00 33.09 3.01
3376 7832 7.530863 TCATTATTGTTATTACAAGTTGCGCA 58.469 30.769 5.66 5.66 46.71 6.09
3398 7854 3.884895 AGTCGATGGCAAACATTGGATA 58.115 40.909 0.00 0.00 40.72 2.59
3399 7855 4.464008 AGTCGATGGCAAACATTGGATAT 58.536 39.130 0.00 0.00 40.72 1.63
3409 7865 6.108015 GCAAACATTGGATATTGTGATTGGT 58.892 36.000 0.00 0.00 0.00 3.67
3413 7869 5.068198 ACATTGGATATTGTGATTGGTCAGC 59.932 40.000 0.00 0.00 34.36 4.26
3486 7942 4.775253 TGGGGGTCCAAAATAAGATCAAAC 59.225 41.667 0.00 0.00 40.73 2.93
3571 8029 1.079875 CCATTTGCCGATGTTGCAGC 61.080 55.000 0.00 0.00 40.35 5.25
3581 8039 3.688159 GTTGCAGCAAGCTGGGGG 61.688 66.667 22.20 0.00 45.94 5.40
3798 8257 5.689383 TTAGCTTGCCTTGTAGAAACTTG 57.311 39.130 0.00 0.00 0.00 3.16
3827 8287 7.386851 CCGAGTTAAATATCATCATACACCCT 58.613 38.462 0.00 0.00 0.00 4.34
3903 8373 4.833938 TGGTTTTTAATACACCCTTGTCCC 59.166 41.667 0.00 0.00 37.15 4.46
3909 8379 1.823169 TACACCCTTGTCCCGTGCTC 61.823 60.000 0.00 0.00 37.15 4.26
3966 8436 4.882671 ACATTTGGATCGACATACAAGC 57.117 40.909 0.00 0.00 34.08 4.01
4041 8514 4.712051 ATGCCAGGATGACTAGCAAATA 57.288 40.909 0.00 0.00 39.69 1.40
4049 8522 7.173907 CCAGGATGACTAGCAAATAATTGTAGG 59.826 40.741 0.00 0.00 39.69 3.18
4053 8527 8.854614 ATGACTAGCAAATAATTGTAGGATCC 57.145 34.615 2.48 2.48 38.85 3.36
4070 8544 2.902705 TCCGGTAGTGTTATCATGCC 57.097 50.000 0.00 0.00 0.00 4.40
4071 8545 2.394632 TCCGGTAGTGTTATCATGCCT 58.605 47.619 0.00 0.00 0.00 4.75
4072 8546 2.102420 TCCGGTAGTGTTATCATGCCTG 59.898 50.000 0.00 0.00 0.00 4.85
4073 8547 2.483876 CGGTAGTGTTATCATGCCTGG 58.516 52.381 0.00 0.00 0.00 4.45
4074 8548 2.158957 CGGTAGTGTTATCATGCCTGGT 60.159 50.000 0.00 0.00 0.00 4.00
4075 8549 3.069016 CGGTAGTGTTATCATGCCTGGTA 59.931 47.826 0.00 0.00 0.00 3.25
4076 8550 4.377897 GGTAGTGTTATCATGCCTGGTAC 58.622 47.826 0.00 0.00 0.00 3.34
4077 8551 4.101119 GGTAGTGTTATCATGCCTGGTACT 59.899 45.833 0.00 0.00 0.00 2.73
4078 8552 5.303589 GGTAGTGTTATCATGCCTGGTACTA 59.696 44.000 0.00 0.00 0.00 1.82
4079 8553 5.277857 AGTGTTATCATGCCTGGTACTAC 57.722 43.478 0.00 0.00 0.00 2.73
4080 8554 4.101119 AGTGTTATCATGCCTGGTACTACC 59.899 45.833 0.00 0.00 39.22 3.18
4081 8555 4.101119 GTGTTATCATGCCTGGTACTACCT 59.899 45.833 6.79 0.00 39.58 3.08
4082 8556 4.344102 TGTTATCATGCCTGGTACTACCTC 59.656 45.833 6.79 0.00 39.58 3.85
4083 8557 1.789523 TCATGCCTGGTACTACCTCC 58.210 55.000 6.79 0.00 39.58 4.30
4084 8558 0.389391 CATGCCTGGTACTACCTCCG 59.611 60.000 6.79 0.00 39.58 4.63
4085 8559 0.032416 ATGCCTGGTACTACCTCCGT 60.032 55.000 6.79 0.00 39.58 4.69
4086 8560 0.682209 TGCCTGGTACTACCTCCGTC 60.682 60.000 6.79 0.00 39.58 4.79
4087 8561 0.395448 GCCTGGTACTACCTCCGTCT 60.395 60.000 6.79 0.00 39.58 4.18
4088 8562 1.133976 GCCTGGTACTACCTCCGTCTA 60.134 57.143 6.79 0.00 39.58 2.59
4089 8563 2.848691 CCTGGTACTACCTCCGTCTAG 58.151 57.143 6.79 0.00 39.58 2.43
4090 8564 2.486907 CCTGGTACTACCTCCGTCTAGG 60.487 59.091 6.79 0.00 39.58 3.02
4100 8574 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
4101 8575 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
4102 8576 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
4103 8577 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
4104 8578 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
4105 8579 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
4112 8586 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
4113 8587 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
4114 8588 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
4115 8589 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
4116 8590 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
4117 8591 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
4118 8592 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
4119 8593 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
4120 8594 3.065095 GTCATTCGCGTAGTTCTAGGTCT 59.935 47.826 5.77 0.00 0.00 3.85
4121 8595 3.693085 TCATTCGCGTAGTTCTAGGTCTT 59.307 43.478 5.77 0.00 0.00 3.01
4122 8596 4.157289 TCATTCGCGTAGTTCTAGGTCTTT 59.843 41.667 5.77 0.00 0.00 2.52
4123 8597 3.482722 TCGCGTAGTTCTAGGTCTTTG 57.517 47.619 5.77 0.00 0.00 2.77
4124 8598 1.918609 CGCGTAGTTCTAGGTCTTTGC 59.081 52.381 0.00 0.00 0.00 3.68
4125 8599 2.269172 GCGTAGTTCTAGGTCTTTGCC 58.731 52.381 0.00 0.00 0.00 4.52
4126 8600 2.527100 CGTAGTTCTAGGTCTTTGCCG 58.473 52.381 0.00 0.00 0.00 5.69
4127 8601 2.163010 CGTAGTTCTAGGTCTTTGCCGA 59.837 50.000 0.00 0.00 0.00 5.54
4128 8602 3.181489 CGTAGTTCTAGGTCTTTGCCGAT 60.181 47.826 0.00 0.00 0.00 4.18
4129 8603 3.252974 AGTTCTAGGTCTTTGCCGATG 57.747 47.619 0.00 0.00 0.00 3.84
4130 8604 2.093447 AGTTCTAGGTCTTTGCCGATGG 60.093 50.000 0.00 0.00 0.00 3.51
4131 8605 1.860641 TCTAGGTCTTTGCCGATGGA 58.139 50.000 0.00 0.00 0.00 3.41
4132 8606 1.480954 TCTAGGTCTTTGCCGATGGAC 59.519 52.381 0.00 0.00 0.00 4.02
4133 8607 1.482593 CTAGGTCTTTGCCGATGGACT 59.517 52.381 0.00 0.00 0.00 3.85
4134 8608 0.693049 AGGTCTTTGCCGATGGACTT 59.307 50.000 0.00 0.00 0.00 3.01
4135 8609 1.906574 AGGTCTTTGCCGATGGACTTA 59.093 47.619 0.00 0.00 0.00 2.24
4136 8610 2.505819 AGGTCTTTGCCGATGGACTTAT 59.494 45.455 0.00 0.00 0.00 1.73
4137 8611 3.054361 AGGTCTTTGCCGATGGACTTATT 60.054 43.478 0.00 0.00 0.00 1.40
4138 8612 3.312697 GGTCTTTGCCGATGGACTTATTC 59.687 47.826 0.00 0.00 0.00 1.75
4139 8613 3.938963 GTCTTTGCCGATGGACTTATTCA 59.061 43.478 0.00 0.00 0.00 2.57
4140 8614 3.938963 TCTTTGCCGATGGACTTATTCAC 59.061 43.478 0.00 0.00 0.00 3.18
4141 8615 3.627395 TTGCCGATGGACTTATTCACT 57.373 42.857 0.00 0.00 0.00 3.41
4142 8616 2.905075 TGCCGATGGACTTATTCACTG 58.095 47.619 0.00 0.00 0.00 3.66
4143 8617 2.499693 TGCCGATGGACTTATTCACTGA 59.500 45.455 0.00 0.00 0.00 3.41
4144 8618 3.126831 GCCGATGGACTTATTCACTGAG 58.873 50.000 0.00 0.00 0.00 3.35
4145 8619 3.181475 GCCGATGGACTTATTCACTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
4146 8620 4.363999 CCGATGGACTTATTCACTGAGAC 58.636 47.826 0.00 0.00 0.00 3.36
4147 8621 4.038361 CGATGGACTTATTCACTGAGACG 58.962 47.826 0.00 0.00 0.00 4.18
4148 8622 3.868757 TGGACTTATTCACTGAGACGG 57.131 47.619 0.00 0.00 0.00 4.79
4149 8623 3.427573 TGGACTTATTCACTGAGACGGA 58.572 45.455 0.00 0.00 0.00 4.69
4150 8624 3.444034 TGGACTTATTCACTGAGACGGAG 59.556 47.826 0.00 0.00 0.00 4.63
4151 8625 3.181485 GGACTTATTCACTGAGACGGAGG 60.181 52.174 0.00 0.00 0.00 4.30
4152 8626 3.432378 ACTTATTCACTGAGACGGAGGT 58.568 45.455 0.00 0.00 0.00 3.85
4153 8627 4.597004 ACTTATTCACTGAGACGGAGGTA 58.403 43.478 0.00 0.00 0.00 3.08
4175 8649 5.537300 AGTAGTGTTATCATGCCTGTAGG 57.463 43.478 0.00 0.00 38.53 3.18
4232 8711 2.489722 GAGTGGATTCTTTTCCTGGTGC 59.510 50.000 0.00 0.00 36.68 5.01
4236 8715 2.751806 GGATTCTTTTCCTGGTGCTGAG 59.248 50.000 0.00 0.00 32.68 3.35
4288 8775 6.266168 TCATGTTTGTTGGGCTTAGTTATG 57.734 37.500 0.00 0.00 0.00 1.90
4291 8778 4.279671 TGTTTGTTGGGCTTAGTTATGTGG 59.720 41.667 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.300286 CACTGAAGGAAATATGCCCTAAAGG 59.700 44.000 0.00 0.00 39.47 3.11
35 36 5.300286 CCACTGAAGGAAATATGCCCTAAAG 59.700 44.000 0.00 1.89 31.36 1.85
37 38 4.792068 CCACTGAAGGAAATATGCCCTAA 58.208 43.478 0.00 0.00 31.36 2.69
38 39 3.435026 GCCACTGAAGGAAATATGCCCTA 60.435 47.826 0.00 0.00 31.36 3.53
39 40 2.687914 GCCACTGAAGGAAATATGCCCT 60.688 50.000 0.00 0.00 0.00 5.19
40 41 1.683385 GCCACTGAAGGAAATATGCCC 59.317 52.381 0.00 0.00 0.00 5.36
42 43 3.243636 CCATGCCACTGAAGGAAATATGC 60.244 47.826 0.00 0.00 0.00 3.14
43 44 3.243636 GCCATGCCACTGAAGGAAATATG 60.244 47.826 0.00 0.00 0.00 1.78
44 45 2.961062 GCCATGCCACTGAAGGAAATAT 59.039 45.455 0.00 0.00 0.00 1.28
45 46 2.378038 GCCATGCCACTGAAGGAAATA 58.622 47.619 0.00 0.00 0.00 1.40
48 49 1.675310 CGCCATGCCACTGAAGGAA 60.675 57.895 0.00 0.00 0.00 3.36
49 50 2.046023 CGCCATGCCACTGAAGGA 60.046 61.111 0.00 0.00 0.00 3.36
51 52 1.672030 TCACGCCATGCCACTGAAG 60.672 57.895 0.00 0.00 0.00 3.02
52 53 1.965930 GTCACGCCATGCCACTGAA 60.966 57.895 0.00 0.00 0.00 3.02
54 55 2.191354 CTTGTCACGCCATGCCACTG 62.191 60.000 0.00 0.00 0.00 3.66
55 56 1.968017 CTTGTCACGCCATGCCACT 60.968 57.895 0.00 0.00 0.00 4.00
58 59 0.313672 TTTTCTTGTCACGCCATGCC 59.686 50.000 0.00 0.00 0.00 4.40
59 60 1.266718 TCTTTTCTTGTCACGCCATGC 59.733 47.619 0.00 0.00 0.00 4.06
60 61 3.624326 TTCTTTTCTTGTCACGCCATG 57.376 42.857 0.00 0.00 0.00 3.66
214 2915 1.600636 CGTTGTCATGCCCACCTGT 60.601 57.895 0.00 0.00 0.00 4.00
414 4312 4.442706 GCAACGAGGAAGAGGATATTTGA 58.557 43.478 0.00 0.00 0.00 2.69
469 4368 9.464248 GTAATGCAGAAATAAAATCGCAAAAAG 57.536 29.630 0.00 0.00 32.90 2.27
487 4389 9.891828 TGTAACACTTAATTTTGAGTAATGCAG 57.108 29.630 0.00 0.00 0.00 4.41
573 4476 2.151202 TGACCTGGAAATCGTGCTTTC 58.849 47.619 0.00 0.00 34.95 2.62
589 4492 2.952310 GGTTTTAGCCTGGATGATGACC 59.048 50.000 0.00 0.00 0.00 4.02
631 4534 7.092137 GGTATTGTACCCCAAATTAGTTGTC 57.908 40.000 0.00 0.00 43.18 3.18
655 4583 5.047802 ACCTAGAAACAACAATGAATGGCTG 60.048 40.000 0.00 0.00 0.00 4.85
691 4916 0.243907 TCCTTCTACTGCTGTCACGC 59.756 55.000 0.00 0.00 0.00 5.34
693 4918 1.205893 CCCTCCTTCTACTGCTGTCAC 59.794 57.143 0.00 0.00 0.00 3.67
694 4919 1.077169 TCCCTCCTTCTACTGCTGTCA 59.923 52.381 0.00 0.00 0.00 3.58
695 4920 1.754226 CTCCCTCCTTCTACTGCTGTC 59.246 57.143 0.00 0.00 0.00 3.51
696 4921 1.859302 CTCCCTCCTTCTACTGCTGT 58.141 55.000 0.66 0.66 0.00 4.40
697 4922 0.463620 GCTCCCTCCTTCTACTGCTG 59.536 60.000 0.00 0.00 0.00 4.41
698 4923 1.040339 CGCTCCCTCCTTCTACTGCT 61.040 60.000 0.00 0.00 0.00 4.24
699 4924 1.439644 CGCTCCCTCCTTCTACTGC 59.560 63.158 0.00 0.00 0.00 4.40
700 4925 0.395862 TCCGCTCCCTCCTTCTACTG 60.396 60.000 0.00 0.00 0.00 2.74
701 4926 0.106419 CTCCGCTCCCTCCTTCTACT 60.106 60.000 0.00 0.00 0.00 2.57
702 4927 1.110518 CCTCCGCTCCCTCCTTCTAC 61.111 65.000 0.00 0.00 0.00 2.59
703 4928 1.230497 CCTCCGCTCCCTCCTTCTA 59.770 63.158 0.00 0.00 0.00 2.10
704 4929 2.042435 CCTCCGCTCCCTCCTTCT 60.042 66.667 0.00 0.00 0.00 2.85
705 4930 3.855853 GCCTCCGCTCCCTCCTTC 61.856 72.222 0.00 0.00 0.00 3.46
736 4984 3.777925 GTGTACACAGCTGCGGCG 61.778 66.667 21.14 0.51 44.37 6.46
748 4996 0.608640 CTGGTCTGGTCTGGGTGTAC 59.391 60.000 0.00 0.00 0.00 2.90
760 5008 1.480137 GATCTGGTCTGGTCTGGTCTG 59.520 57.143 0.00 0.00 0.00 3.51
765 5013 1.206610 CCTGTGATCTGGTCTGGTCTG 59.793 57.143 0.00 0.00 0.00 3.51
769 5017 1.222936 GCCCTGTGATCTGGTCTGG 59.777 63.158 0.00 0.00 0.00 3.86
772 5020 1.451028 GCTGCCCTGTGATCTGGTC 60.451 63.158 0.00 0.00 0.00 4.02
774 5022 1.451567 CTGCTGCCCTGTGATCTGG 60.452 63.158 0.00 0.00 0.00 3.86
775 5023 2.113433 GCTGCTGCCCTGTGATCTG 61.113 63.158 3.85 0.00 0.00 2.90
776 5024 2.271497 GCTGCTGCCCTGTGATCT 59.729 61.111 3.85 0.00 0.00 2.75
777 5025 3.200593 CGCTGCTGCCCTGTGATC 61.201 66.667 10.24 0.00 35.36 2.92
849 5097 0.725133 AGAGAGGGGAAAGATGGGGA 59.275 55.000 0.00 0.00 0.00 4.81
868 5147 4.447180 GGATTGGAAGGGGAATTTATCGGA 60.447 45.833 0.00 0.00 0.00 4.55
1899 6321 1.661463 TCTGGGCAAAGTGATCCTCT 58.339 50.000 0.00 0.00 0.00 3.69
1950 6372 2.265367 TGCATATATCCCATCACCGGT 58.735 47.619 0.00 0.00 0.00 5.28
2058 6480 2.101415 GTGATCGGACCTGTCATCATCA 59.899 50.000 0.00 1.19 28.90 3.07
2211 6634 7.124750 AGGAATTGCTACTTTTCTAATGGCAAT 59.875 33.333 0.00 0.00 46.31 3.56
2212 6635 6.437162 AGGAATTGCTACTTTTCTAATGGCAA 59.563 34.615 0.00 0.00 41.31 4.52
2215 6638 8.738645 AGTAGGAATTGCTACTTTTCTAATGG 57.261 34.615 28.21 0.00 33.06 3.16
2227 6654 7.066525 CCGTTAATGGAAAAGTAGGAATTGCTA 59.933 37.037 8.10 2.04 0.00 3.49
2242 6669 2.004583 CGAGCACTCCGTTAATGGAA 57.995 50.000 17.15 2.29 37.64 3.53
2264 6691 4.271696 AGTCCTCACGATCATCAAACAA 57.728 40.909 0.00 0.00 0.00 2.83
2265 6692 3.961480 AGTCCTCACGATCATCAAACA 57.039 42.857 0.00 0.00 0.00 2.83
2266 6693 5.277058 GCATAAGTCCTCACGATCATCAAAC 60.277 44.000 0.00 0.00 0.00 2.93
2267 6694 4.811024 GCATAAGTCCTCACGATCATCAAA 59.189 41.667 0.00 0.00 0.00 2.69
2270 6697 3.006323 AGGCATAAGTCCTCACGATCATC 59.994 47.826 0.00 0.00 0.00 2.92
2271 6698 2.968574 AGGCATAAGTCCTCACGATCAT 59.031 45.455 0.00 0.00 0.00 2.45
2272 6699 2.101415 CAGGCATAAGTCCTCACGATCA 59.899 50.000 0.00 0.00 0.00 2.92
2273 6700 2.101582 ACAGGCATAAGTCCTCACGATC 59.898 50.000 0.00 0.00 0.00 3.69
2274 6701 2.101582 GACAGGCATAAGTCCTCACGAT 59.898 50.000 0.00 0.00 0.00 3.73
2275 6702 1.476891 GACAGGCATAAGTCCTCACGA 59.523 52.381 0.00 0.00 0.00 4.35
2276 6703 1.204704 TGACAGGCATAAGTCCTCACG 59.795 52.381 0.00 0.00 33.89 4.35
2277 6704 3.550437 ATGACAGGCATAAGTCCTCAC 57.450 47.619 0.00 0.00 34.82 3.51
2278 6705 4.655649 ACATATGACAGGCATAAGTCCTCA 59.344 41.667 10.38 0.00 42.45 3.86
2279 6706 5.220710 ACATATGACAGGCATAAGTCCTC 57.779 43.478 10.38 0.00 42.45 3.71
2280 6707 5.636903 AACATATGACAGGCATAAGTCCT 57.363 39.130 10.38 0.00 39.68 3.85
2281 6708 5.822519 TCAAACATATGACAGGCATAAGTCC 59.177 40.000 10.38 0.00 39.68 3.85
2282 6709 6.925610 TCAAACATATGACAGGCATAAGTC 57.074 37.500 10.38 0.00 39.68 3.01
2285 6712 7.878547 TTCATCAAACATATGACAGGCATAA 57.121 32.000 10.38 0.00 42.45 1.90
2508 6940 0.806868 GCTGCTGTAATTGCTGCTGA 59.193 50.000 26.58 9.83 46.79 4.26
2673 7129 3.734866 TATTGCTGTGGAGCTGGCTGG 62.735 57.143 0.00 0.00 46.39 4.85
2703 7159 5.725325 TGTGAATGAAATGCTGATTTCCA 57.275 34.783 6.96 0.00 44.83 3.53
2879 7335 2.535485 TACCGCACCAGCAGGAATGG 62.535 60.000 0.35 2.37 43.87 3.16
2988 7444 1.298667 GGTTCGGTACATGCCAGGT 59.701 57.895 0.00 0.00 0.00 4.00
3022 7478 2.124529 GTTAGGCCCTGGAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
3034 7490 4.062991 GCATAATTAGGGGTCGTGTTAGG 58.937 47.826 0.00 0.00 0.00 2.69
3043 7499 3.181418 CCCATTCCAGCATAATTAGGGGT 60.181 47.826 0.00 0.00 0.00 4.95
3300 7756 2.419673 CGCAGCATAACAGAATTCACCA 59.580 45.455 8.44 0.00 0.00 4.17
3376 7832 2.513753 TCCAATGTTTGCCATCGACTT 58.486 42.857 0.00 0.00 31.75 3.01
3398 7854 1.542915 GCACAGCTGACCAATCACAAT 59.457 47.619 23.35 0.00 0.00 2.71
3399 7855 0.953727 GCACAGCTGACCAATCACAA 59.046 50.000 23.35 0.00 0.00 3.33
3409 7865 0.462581 GATCCCGAATGCACAGCTGA 60.463 55.000 23.35 0.00 0.00 4.26
3413 7869 2.684374 TGATTTGATCCCGAATGCACAG 59.316 45.455 0.00 0.00 0.00 3.66
3486 7942 3.953201 GGGACGAACATAGTACCGG 57.047 57.895 0.00 0.00 32.16 5.28
3571 8029 2.036256 CCTTCCACCCCCAGCTTG 59.964 66.667 0.00 0.00 0.00 4.01
3581 8039 0.110486 TTCACAGGCCTTCCTTCCAC 59.890 55.000 0.00 0.00 41.93 4.02
3798 8257 9.088512 GTGTATGATGATATTTAACTCGGGATC 57.911 37.037 0.00 0.00 0.00 3.36
3903 8373 2.993911 GAAACACGCACACGAGCACG 62.994 60.000 0.76 0.76 43.93 5.34
3955 8425 2.009625 GACGCCACGCTTGTATGTCG 62.010 60.000 0.00 0.00 0.00 4.35
3966 8436 1.275657 GTCAAACTGTGACGCCACG 59.724 57.895 0.00 0.00 46.99 4.94
4041 8514 6.325545 TGATAACACTACCGGATCCTACAATT 59.674 38.462 9.46 0.00 0.00 2.32
4049 8522 3.006967 AGGCATGATAACACTACCGGATC 59.993 47.826 9.46 0.00 0.00 3.36
4053 8527 2.158957 ACCAGGCATGATAACACTACCG 60.159 50.000 0.00 0.00 0.00 4.02
4070 8544 2.848691 CCTAGACGGAGGTAGTACCAG 58.151 57.143 21.49 13.78 41.95 4.00
4079 8553 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
4080 8554 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
4081 8555 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
4082 8556 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
4083 8557 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
4084 8558 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
4085 8559 4.097437 ACGCGAATGACTTATTCACCTAGA 59.903 41.667 15.93 0.00 44.42 2.43
4086 8560 4.360563 ACGCGAATGACTTATTCACCTAG 58.639 43.478 15.93 0.00 44.42 3.02
4087 8561 4.380841 ACGCGAATGACTTATTCACCTA 57.619 40.909 15.93 0.00 44.42 3.08
4088 8562 3.247006 ACGCGAATGACTTATTCACCT 57.753 42.857 15.93 0.00 44.42 4.00
4089 8563 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
4090 8564 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
4091 8565 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
4092 8566 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
4093 8567 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
4094 8568 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
4095 8569 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
4096 8570 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
4097 8571 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
4098 8572 3.065095 AGACCTAGAACTACGCGAATGAC 59.935 47.826 15.93 0.66 0.00 3.06
4099 8573 3.276857 AGACCTAGAACTACGCGAATGA 58.723 45.455 15.93 0.00 0.00 2.57
4100 8574 3.694535 AGACCTAGAACTACGCGAATG 57.305 47.619 15.93 4.47 0.00 2.67
4101 8575 4.421948 CAAAGACCTAGAACTACGCGAAT 58.578 43.478 15.93 0.00 0.00 3.34
4102 8576 3.829948 CAAAGACCTAGAACTACGCGAA 58.170 45.455 15.93 0.00 0.00 4.70
4103 8577 2.415090 GCAAAGACCTAGAACTACGCGA 60.415 50.000 15.93 0.00 0.00 5.87
4104 8578 1.918609 GCAAAGACCTAGAACTACGCG 59.081 52.381 3.53 3.53 0.00 6.01
4105 8579 2.269172 GGCAAAGACCTAGAACTACGC 58.731 52.381 0.00 0.00 0.00 4.42
4106 8580 2.163010 TCGGCAAAGACCTAGAACTACG 59.837 50.000 0.00 0.00 0.00 3.51
4107 8581 3.863142 TCGGCAAAGACCTAGAACTAC 57.137 47.619 0.00 0.00 0.00 2.73
4108 8582 3.132289 CCATCGGCAAAGACCTAGAACTA 59.868 47.826 0.00 0.00 0.00 2.24
4109 8583 2.093447 CCATCGGCAAAGACCTAGAACT 60.093 50.000 0.00 0.00 0.00 3.01
4110 8584 2.093658 TCCATCGGCAAAGACCTAGAAC 60.094 50.000 0.00 0.00 0.00 3.01
4111 8585 2.093658 GTCCATCGGCAAAGACCTAGAA 60.094 50.000 0.00 0.00 0.00 2.10
4112 8586 1.480954 GTCCATCGGCAAAGACCTAGA 59.519 52.381 0.00 0.00 0.00 2.43
4113 8587 1.482593 AGTCCATCGGCAAAGACCTAG 59.517 52.381 0.00 0.00 0.00 3.02
4114 8588 1.568504 AGTCCATCGGCAAAGACCTA 58.431 50.000 0.00 0.00 0.00 3.08
4115 8589 0.693049 AAGTCCATCGGCAAAGACCT 59.307 50.000 0.00 0.00 0.00 3.85
4116 8590 2.396590 TAAGTCCATCGGCAAAGACC 57.603 50.000 0.00 0.00 0.00 3.85
4117 8591 3.938963 TGAATAAGTCCATCGGCAAAGAC 59.061 43.478 0.00 0.00 0.00 3.01
4118 8592 3.938963 GTGAATAAGTCCATCGGCAAAGA 59.061 43.478 0.00 0.00 0.00 2.52
4119 8593 3.941483 AGTGAATAAGTCCATCGGCAAAG 59.059 43.478 0.00 0.00 0.00 2.77
4120 8594 3.689161 CAGTGAATAAGTCCATCGGCAAA 59.311 43.478 0.00 0.00 0.00 3.68
4121 8595 3.055458 TCAGTGAATAAGTCCATCGGCAA 60.055 43.478 0.00 0.00 0.00 4.52
4122 8596 2.499693 TCAGTGAATAAGTCCATCGGCA 59.500 45.455 0.00 0.00 0.00 5.69
4123 8597 3.126831 CTCAGTGAATAAGTCCATCGGC 58.873 50.000 0.00 0.00 0.00 5.54
4124 8598 4.363999 GTCTCAGTGAATAAGTCCATCGG 58.636 47.826 0.00 0.00 0.00 4.18
4125 8599 4.038361 CGTCTCAGTGAATAAGTCCATCG 58.962 47.826 0.00 0.00 0.00 3.84
4126 8600 4.098044 TCCGTCTCAGTGAATAAGTCCATC 59.902 45.833 0.00 0.00 0.00 3.51
4127 8601 4.023980 TCCGTCTCAGTGAATAAGTCCAT 58.976 43.478 0.00 0.00 0.00 3.41
4128 8602 3.427573 TCCGTCTCAGTGAATAAGTCCA 58.572 45.455 0.00 0.00 0.00 4.02
4129 8603 3.181485 CCTCCGTCTCAGTGAATAAGTCC 60.181 52.174 0.00 0.00 0.00 3.85
4130 8604 3.444388 ACCTCCGTCTCAGTGAATAAGTC 59.556 47.826 0.00 0.00 0.00 3.01
4131 8605 3.432378 ACCTCCGTCTCAGTGAATAAGT 58.568 45.455 0.00 0.00 0.00 2.24
4132 8606 4.641094 ACTACCTCCGTCTCAGTGAATAAG 59.359 45.833 0.00 0.00 0.00 1.73
4133 8607 4.597004 ACTACCTCCGTCTCAGTGAATAA 58.403 43.478 0.00 0.00 0.00 1.40
4134 8608 4.232188 ACTACCTCCGTCTCAGTGAATA 57.768 45.455 0.00 0.00 0.00 1.75
4135 8609 3.088789 ACTACCTCCGTCTCAGTGAAT 57.911 47.619 0.00 0.00 0.00 2.57
4136 8610 2.581216 ACTACCTCCGTCTCAGTGAA 57.419 50.000 0.00 0.00 0.00 3.18
4137 8611 2.570752 ACTACTACCTCCGTCTCAGTGA 59.429 50.000 0.00 0.00 0.00 3.41
4138 8612 2.678836 CACTACTACCTCCGTCTCAGTG 59.321 54.545 0.00 0.00 0.00 3.66
4139 8613 2.305343 ACACTACTACCTCCGTCTCAGT 59.695 50.000 0.00 0.00 0.00 3.41
4140 8614 2.988570 ACACTACTACCTCCGTCTCAG 58.011 52.381 0.00 0.00 0.00 3.35
4141 8615 3.430042 AACACTACTACCTCCGTCTCA 57.570 47.619 0.00 0.00 0.00 3.27
4142 8616 5.121811 TGATAACACTACTACCTCCGTCTC 58.878 45.833 0.00 0.00 0.00 3.36
4143 8617 5.108187 TGATAACACTACTACCTCCGTCT 57.892 43.478 0.00 0.00 0.00 4.18
4144 8618 5.759963 CATGATAACACTACTACCTCCGTC 58.240 45.833 0.00 0.00 0.00 4.79
4145 8619 4.037684 GCATGATAACACTACTACCTCCGT 59.962 45.833 0.00 0.00 0.00 4.69
4146 8620 4.547532 GCATGATAACACTACTACCTCCG 58.452 47.826 0.00 0.00 0.00 4.63
4147 8621 4.589374 AGGCATGATAACACTACTACCTCC 59.411 45.833 0.00 0.00 0.00 4.30
4148 8622 5.069251 ACAGGCATGATAACACTACTACCTC 59.931 44.000 4.84 0.00 0.00 3.85
4149 8623 4.962995 ACAGGCATGATAACACTACTACCT 59.037 41.667 4.84 0.00 0.00 3.08
4150 8624 5.277857 ACAGGCATGATAACACTACTACC 57.722 43.478 4.84 0.00 0.00 3.18
4151 8625 6.040616 ACCTACAGGCATGATAACACTACTAC 59.959 42.308 4.84 0.00 39.32 2.73
4152 8626 6.134055 ACCTACAGGCATGATAACACTACTA 58.866 40.000 4.84 0.00 39.32 1.82
4153 8627 4.962995 ACCTACAGGCATGATAACACTACT 59.037 41.667 4.84 0.00 39.32 2.57
4175 8649 1.135402 AGCAAATCCATCGGCGAAAAC 60.135 47.619 15.93 0.00 0.00 2.43
4232 8711 2.500910 ACATCTCTTCTCCTTGGCTCAG 59.499 50.000 0.00 0.00 0.00 3.35
4236 8715 4.764308 AGAAAAACATCTCTTCTCCTTGGC 59.236 41.667 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.