Multiple sequence alignment - TraesCS3A01G050800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G050800 chr3A 100.000 5034 0 0 1 5034 27011811 27006778 0.000000e+00 9297.0
1 TraesCS3A01G050800 chr3A 92.169 166 11 2 1 165 164275211 164275375 3.030000e-57 233.0
2 TraesCS3A01G050800 chr3A 87.342 79 10 0 190 268 27131282 27131204 1.930000e-14 91.6
3 TraesCS3A01G050800 chr3A 87.342 79 10 0 190 268 27170840 27170762 1.930000e-14 91.6
4 TraesCS3A01G050800 chr3A 95.918 49 2 0 1829 1877 99426276 99426228 4.180000e-11 80.5
5 TraesCS3A01G050800 chr3A 92.157 51 4 0 1827 1877 710277977 710277927 6.990000e-09 73.1
6 TraesCS3A01G050800 chr3A 88.136 59 7 0 1818 1876 746180332 746180390 2.510000e-08 71.3
7 TraesCS3A01G050800 chr3D 87.362 2991 229 73 2116 5034 19362882 19359969 0.000000e+00 3291.0
8 TraesCS3A01G050800 chr3D 89.413 2437 182 43 2130 4524 19537803 19535401 0.000000e+00 3001.0
9 TraesCS3A01G050800 chr3D 88.089 2015 117 41 153 2092 19539763 19537797 0.000000e+00 2278.0
10 TraesCS3A01G050800 chr3D 94.172 429 24 1 1126 1553 19363665 19363237 0.000000e+00 652.0
11 TraesCS3A01G050800 chr3D 80.710 451 57 13 643 1068 19548048 19547603 1.750000e-84 324.0
12 TraesCS3A01G050800 chr3D 89.333 150 14 2 4864 5011 19531714 19531565 2.390000e-43 187.0
13 TraesCS3A01G050800 chr3D 97.826 92 2 0 4685 4776 19535161 19535070 5.220000e-35 159.0
14 TraesCS3A01G050800 chr3D 87.097 93 11 1 630 722 19364014 19363923 2.480000e-18 104.0
15 TraesCS3A01G050800 chr3D 97.826 46 1 0 1832 1877 569116061 569116106 4.180000e-11 80.5
16 TraesCS3A01G050800 chr3D 92.453 53 4 0 1835 1887 172378259 172378207 5.400000e-10 76.8
17 TraesCS3A01G050800 chr3B 87.029 1673 133 48 2134 3763 31107406 31105775 0.000000e+00 1810.0
18 TraesCS3A01G050800 chr3B 87.242 1646 127 47 2134 3737 31100289 31098685 0.000000e+00 1799.0
19 TraesCS3A01G050800 chr3B 84.090 1741 156 56 153 1831 31109405 31107724 0.000000e+00 1568.0
20 TraesCS3A01G050800 chr3B 83.462 1040 78 35 3759 4777 31105664 31104698 0.000000e+00 881.0
21 TraesCS3A01G050800 chr3B 89.948 388 35 2 2279 2666 539186046 539186429 9.730000e-137 497.0
22 TraesCS3A01G050800 chr3B 88.978 372 35 4 1466 1836 539185288 539185654 5.940000e-124 455.0
23 TraesCS3A01G050800 chr3B 76.364 990 139 50 164 1089 31116422 31115464 1.290000e-120 444.0
24 TraesCS3A01G050800 chr3B 85.260 346 31 9 756 1089 31261881 31261544 6.240000e-89 339.0
25 TraesCS3A01G050800 chr3B 90.566 212 16 3 1888 2096 539185656 539185866 1.380000e-70 278.0
26 TraesCS3A01G050800 chr3B 92.737 179 13 0 2111 2289 539185851 539186029 5.000000e-65 259.0
27 TraesCS3A01G050800 chr3B 86.364 198 19 2 1642 1831 31100804 31100607 5.110000e-50 209.0
28 TraesCS3A01G050800 chr3B 88.172 93 11 0 4919 5011 31103877 31103785 1.480000e-20 111.0
29 TraesCS3A01G050800 chr3B 86.408 103 6 2 153 247 31215240 31215138 6.890000e-19 106.0
30 TraesCS3A01G050800 chr3B 89.610 77 8 0 192 268 31124456 31124380 1.150000e-16 99.0
31 TraesCS3A01G050800 chr3B 85.294 102 7 5 153 246 31133440 31133339 1.150000e-16 99.0
32 TraesCS3A01G050800 chr3B 81.746 126 14 4 160 277 31113743 31113619 4.150000e-16 97.1
33 TraesCS3A01G050800 chr3B 83.178 107 16 2 613 719 31125196 31125092 4.150000e-16 97.1
34 TraesCS3A01G050800 chr2A 90.019 1032 82 13 2274 3289 727622101 727621075 0.000000e+00 1315.0
35 TraesCS3A01G050800 chr2A 89.189 407 21 13 1333 1739 727627945 727627562 2.110000e-133 486.0
36 TraesCS3A01G050800 chr2A 90.615 309 25 4 3456 3762 727621065 727620759 1.690000e-109 407.0
37 TraesCS3A01G050800 chr2A 88.623 334 32 6 1121 1454 727628289 727627962 7.850000e-108 401.0
38 TraesCS3A01G050800 chr2A 95.455 154 6 1 1 153 758094812 758094965 1.400000e-60 244.0
39 TraesCS3A01G050800 chr2A 92.398 171 12 1 1 170 574971834 574971664 5.040000e-60 243.0
40 TraesCS3A01G050800 chr2A 92.308 104 3 5 4684 4787 42403072 42402974 5.250000e-30 143.0
41 TraesCS3A01G050800 chr2A 89.474 57 5 1 3066 3122 589003781 589003726 2.510000e-08 71.3
42 TraesCS3A01G050800 chr5D 89.594 394 22 6 2281 2666 536501165 536501547 2.730000e-132 483.0
43 TraesCS3A01G050800 chr5D 91.667 324 23 2 1512 1835 536500451 536500770 3.580000e-121 446.0
44 TraesCS3A01G050800 chr5D 93.868 212 10 2 1888 2096 536500773 536500984 2.930000e-82 316.0
45 TraesCS3A01G050800 chr5D 93.889 180 7 1 2111 2290 536500969 536501144 8.310000e-68 268.0
46 TraesCS3A01G050800 chr5A 93.865 163 8 2 1 161 668993700 668993862 1.400000e-60 244.0
47 TraesCS3A01G050800 chr6A 93.252 163 10 1 1 162 502960227 502960389 6.510000e-59 239.0
48 TraesCS3A01G050800 chr6A 93.711 159 9 1 1 158 472008009 472007851 2.340000e-58 237.0
49 TraesCS3A01G050800 chr6A 92.169 166 10 3 1 165 169890910 169890747 1.090000e-56 231.0
50 TraesCS3A01G050800 chr6A 97.778 90 1 1 4688 4777 22187291 22187379 2.430000e-33 154.0
51 TraesCS3A01G050800 chr7B 93.210 162 10 1 1 161 125008878 125009039 2.340000e-58 237.0
52 TraesCS3A01G050800 chr7A 93.711 159 9 1 1 158 24763762 24763920 2.340000e-58 237.0
53 TraesCS3A01G050800 chrUn 91.818 110 4 5 4675 4784 358499706 358499602 1.130000e-31 148.0
54 TraesCS3A01G050800 chrUn 90.909 110 5 5 4675 4784 282525258 282525362 5.250000e-30 143.0
55 TraesCS3A01G050800 chrUn 90.909 110 5 4 4675 4784 408845007 408845111 5.250000e-30 143.0
56 TraesCS3A01G050800 chr4B 91.818 110 4 4 4675 4784 656304552 656304656 1.130000e-31 148.0
57 TraesCS3A01G050800 chr1B 96.000 50 2 0 1827 1876 66121416 66121465 1.160000e-11 82.4
58 TraesCS3A01G050800 chr2D 88.406 69 3 5 1830 1894 8292406 8292339 1.500000e-10 78.7
59 TraesCS3A01G050800 chr6B 91.071 56 3 2 1821 1876 626887404 626887457 1.940000e-09 75.0
60 TraesCS3A01G050800 chr4A 90.909 55 4 1 1836 1890 195327464 195327517 6.990000e-09 73.1
61 TraesCS3A01G050800 chr2B 89.286 56 5 1 3067 3122 525077155 525077101 9.040000e-08 69.4
62 TraesCS3A01G050800 chr2B 89.796 49 5 0 3074 3122 662886495 662886447 4.210000e-06 63.9
63 TraesCS3A01G050800 chr1A 88.679 53 6 0 3070 3122 19779348 19779400 1.170000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G050800 chr3A 27006778 27011811 5033 True 9297.00 9297 100.000000 1 5034 1 chr3A.!!$R1 5033
1 TraesCS3A01G050800 chr3D 19531565 19539763 8198 True 1406.25 3001 91.165250 153 5011 4 chr3D.!!$R4 4858
2 TraesCS3A01G050800 chr3D 19359969 19364014 4045 True 1349.00 3291 89.543667 630 5034 3 chr3D.!!$R3 4404
3 TraesCS3A01G050800 chr3B 31098685 31109405 10720 True 1063.00 1810 86.059833 153 5011 6 chr3B.!!$R4 4858
4 TraesCS3A01G050800 chr3B 539185288 539186429 1141 False 372.25 497 90.557250 1466 2666 4 chr3B.!!$F1 1200
5 TraesCS3A01G050800 chr3B 31113619 31116422 2803 True 270.55 444 79.055000 160 1089 2 chr3B.!!$R5 929
6 TraesCS3A01G050800 chr2A 727620759 727622101 1342 True 861.00 1315 90.317000 2274 3762 2 chr2A.!!$R4 1488
7 TraesCS3A01G050800 chr2A 727627562 727628289 727 True 443.50 486 88.906000 1121 1739 2 chr2A.!!$R5 618
8 TraesCS3A01G050800 chr5D 536500451 536501547 1096 False 378.25 483 92.254500 1512 2666 4 chr5D.!!$F1 1154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 395 0.170339 TCATCACGTACGAGTGCCAG 59.830 55.000 24.41 4.96 41.61 4.85 F
896 981 0.602638 CTGCGCCAACCACTCTGTAA 60.603 55.000 4.18 0.00 0.00 2.41 F
2290 2805 1.138069 ACCGTGACAACAGACATCACA 59.862 47.619 4.65 0.00 42.37 3.58 F
3014 3602 0.609957 TGGGCTTTGCTGGTCATCTG 60.610 55.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1194 1323 1.745489 GAAGCCGAACGCCTCCATT 60.745 57.895 0.00 0.00 38.78 3.16 R
2407 2961 2.843401 ATTTTGCAGCCAATTGAGCA 57.157 40.000 17.54 15.64 34.79 4.26 R
3583 4249 0.040351 ACAGGCCAGAGAGCAGAGTA 59.960 55.000 5.01 0.00 0.00 2.59 R
4456 5273 0.040781 GAGATGCTCGTAGCCTCGTC 60.041 60.000 4.73 2.20 41.51 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.274206 CTAAAAGTTTTTAGCCTCAAGACTAGT 57.726 33.333 6.10 0.00 41.97 2.57
56 57 7.731882 AAAGTTTTTAGCCTCAAGACTAGTC 57.268 36.000 15.41 15.41 0.00 2.59
57 58 5.795972 AGTTTTTAGCCTCAAGACTAGTCC 58.204 41.667 19.38 2.89 0.00 3.85
58 59 5.544562 AGTTTTTAGCCTCAAGACTAGTCCT 59.455 40.000 19.38 10.36 0.00 3.85
59 60 6.724905 AGTTTTTAGCCTCAAGACTAGTCCTA 59.275 38.462 19.38 9.39 0.00 2.94
60 61 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
61 62 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
62 63 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
63 64 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
64 65 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
65 66 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
66 67 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
67 68 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
68 69 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
69 70 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
70 71 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
71 72 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
72 73 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
73 74 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
74 75 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
75 76 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
76 77 3.634910 GTCCTAGCCTCTCTTTAGTCAGG 59.365 52.174 0.00 0.00 0.00 3.86
77 78 2.962421 CCTAGCCTCTCTTTAGTCAGGG 59.038 54.545 0.00 0.00 0.00 4.45
78 79 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
79 80 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
80 81 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
81 82 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
82 83 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
83 84 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
84 85 2.567615 TCTCTTTAGTCAGGGGTGCTTC 59.432 50.000 0.00 0.00 0.00 3.86
85 86 1.275291 TCTTTAGTCAGGGGTGCTTCG 59.725 52.381 0.00 0.00 0.00 3.79
86 87 1.275291 CTTTAGTCAGGGGTGCTTCGA 59.725 52.381 0.00 0.00 0.00 3.71
87 88 1.344065 TTAGTCAGGGGTGCTTCGAA 58.656 50.000 0.00 0.00 0.00 3.71
88 89 0.606604 TAGTCAGGGGTGCTTCGAAC 59.393 55.000 0.00 0.00 0.00 3.95
89 90 1.122019 AGTCAGGGGTGCTTCGAACT 61.122 55.000 0.00 0.00 0.00 3.01
90 91 0.250338 GTCAGGGGTGCTTCGAACTT 60.250 55.000 0.00 0.00 0.00 2.66
91 92 0.472471 TCAGGGGTGCTTCGAACTTT 59.528 50.000 0.00 0.00 0.00 2.66
92 93 1.695242 TCAGGGGTGCTTCGAACTTTA 59.305 47.619 0.00 0.00 0.00 1.85
93 94 2.076863 CAGGGGTGCTTCGAACTTTAG 58.923 52.381 0.00 0.00 0.00 1.85
94 95 0.803117 GGGGTGCTTCGAACTTTAGC 59.197 55.000 0.00 0.00 35.50 3.09
95 96 0.803117 GGGTGCTTCGAACTTTAGCC 59.197 55.000 3.71 1.96 34.03 3.93
96 97 1.610886 GGGTGCTTCGAACTTTAGCCT 60.611 52.381 3.71 0.00 34.03 4.58
97 98 1.732809 GGTGCTTCGAACTTTAGCCTC 59.267 52.381 3.71 0.00 34.03 4.70
98 99 2.613223 GGTGCTTCGAACTTTAGCCTCT 60.613 50.000 3.71 0.00 34.03 3.69
99 100 3.368116 GGTGCTTCGAACTTTAGCCTCTA 60.368 47.826 3.71 0.00 34.03 2.43
100 101 4.243270 GTGCTTCGAACTTTAGCCTCTAA 58.757 43.478 3.71 0.00 34.03 2.10
101 102 4.689345 GTGCTTCGAACTTTAGCCTCTAAA 59.311 41.667 3.71 0.00 34.03 1.85
102 103 5.178809 GTGCTTCGAACTTTAGCCTCTAAAA 59.821 40.000 3.71 0.00 34.03 1.52
103 104 5.761234 TGCTTCGAACTTTAGCCTCTAAAAA 59.239 36.000 3.71 0.00 34.03 1.94
104 105 6.078479 GCTTCGAACTTTAGCCTCTAAAAAC 58.922 40.000 0.00 0.00 0.00 2.43
105 106 6.293244 GCTTCGAACTTTAGCCTCTAAAAACA 60.293 38.462 0.00 0.00 0.00 2.83
106 107 6.535274 TCGAACTTTAGCCTCTAAAAACAC 57.465 37.500 1.38 0.00 0.00 3.32
107 108 6.285990 TCGAACTTTAGCCTCTAAAAACACT 58.714 36.000 1.38 0.00 0.00 3.55
108 109 7.436118 TCGAACTTTAGCCTCTAAAAACACTA 58.564 34.615 1.38 0.00 0.00 2.74
109 110 8.092687 TCGAACTTTAGCCTCTAAAAACACTAT 58.907 33.333 1.38 0.00 0.00 2.12
110 111 8.718734 CGAACTTTAGCCTCTAAAAACACTATT 58.281 33.333 1.38 0.00 0.00 1.73
117 118 7.827701 AGCCTCTAAAAACACTATTTTTAGCC 58.172 34.615 19.88 13.35 44.98 3.93
118 119 7.450323 AGCCTCTAAAAACACTATTTTTAGCCA 59.550 33.333 19.88 8.88 44.98 4.75
119 120 7.755373 GCCTCTAAAAACACTATTTTTAGCCAG 59.245 37.037 19.88 14.97 44.98 4.85
120 121 9.010029 CCTCTAAAAACACTATTTTTAGCCAGA 57.990 33.333 19.88 9.51 44.98 3.86
121 122 9.827411 CTCTAAAAACACTATTTTTAGCCAGAC 57.173 33.333 19.88 0.00 44.98 3.51
122 123 9.569122 TCTAAAAACACTATTTTTAGCCAGACT 57.431 29.630 19.88 0.00 44.98 3.24
135 136 6.886178 TTAGCCAGACTAAAAATAGTCCCT 57.114 37.500 11.35 8.66 45.66 4.20
136 137 5.780958 AGCCAGACTAAAAATAGTCCCTT 57.219 39.130 11.35 0.00 45.66 3.95
137 138 5.501156 AGCCAGACTAAAAATAGTCCCTTG 58.499 41.667 11.35 5.05 45.66 3.61
138 139 5.250774 AGCCAGACTAAAAATAGTCCCTTGA 59.749 40.000 11.35 0.00 45.66 3.02
139 140 5.944007 GCCAGACTAAAAATAGTCCCTTGAA 59.056 40.000 11.35 0.00 45.66 2.69
140 141 6.603599 GCCAGACTAAAAATAGTCCCTTGAAT 59.396 38.462 11.35 0.00 45.66 2.57
141 142 7.201741 GCCAGACTAAAAATAGTCCCTTGAATC 60.202 40.741 11.35 0.00 45.66 2.52
142 143 7.283354 CCAGACTAAAAATAGTCCCTTGAATCC 59.717 40.741 11.35 0.00 45.66 3.01
143 144 7.829211 CAGACTAAAAATAGTCCCTTGAATCCA 59.171 37.037 11.35 0.00 45.66 3.41
144 145 8.390921 AGACTAAAAATAGTCCCTTGAATCCAA 58.609 33.333 11.35 0.00 45.66 3.53
145 146 8.950007 ACTAAAAATAGTCCCTTGAATCCAAA 57.050 30.769 0.00 0.00 0.00 3.28
146 147 8.803235 ACTAAAAATAGTCCCTTGAATCCAAAC 58.197 33.333 0.00 0.00 0.00 2.93
147 148 7.610580 AAAAATAGTCCCTTGAATCCAAACA 57.389 32.000 0.00 0.00 0.00 2.83
148 149 6.590234 AAATAGTCCCTTGAATCCAAACAC 57.410 37.500 0.00 0.00 0.00 3.32
149 150 2.876581 AGTCCCTTGAATCCAAACACC 58.123 47.619 0.00 0.00 0.00 4.16
150 151 1.893137 GTCCCTTGAATCCAAACACCC 59.107 52.381 0.00 0.00 0.00 4.61
151 152 1.786441 TCCCTTGAATCCAAACACCCT 59.214 47.619 0.00 0.00 0.00 4.34
159 160 6.575244 TGAATCCAAACACCCTCATAGTAT 57.425 37.500 0.00 0.00 0.00 2.12
188 189 5.306532 AGTGCAAGCTTATCATCAACAAG 57.693 39.130 0.00 0.00 0.00 3.16
228 233 2.034066 CTCCTTGGAGGCCGCAAA 59.966 61.111 9.31 1.46 34.61 3.68
250 255 1.741401 CAGATCGCGGTGCTCCAAA 60.741 57.895 6.13 0.00 0.00 3.28
357 384 1.079819 CCAGCGGTCTTCATCACGT 60.080 57.895 0.00 0.00 0.00 4.49
362 389 1.811428 CGGTCTTCATCACGTACGAG 58.189 55.000 24.41 15.18 0.00 4.18
366 393 1.135489 TCTTCATCACGTACGAGTGCC 60.135 52.381 24.41 0.00 41.61 5.01
367 394 0.599060 TTCATCACGTACGAGTGCCA 59.401 50.000 24.41 0.00 41.61 4.92
368 395 0.170339 TCATCACGTACGAGTGCCAG 59.830 55.000 24.41 4.96 41.61 4.85
372 399 0.800631 CACGTACGAGTGCCAGTAGA 59.199 55.000 24.41 0.00 35.17 2.59
383 410 1.987855 CCAGTAGAACGAGGGCCCA 60.988 63.158 27.56 0.00 0.00 5.36
406 433 1.749063 CCATGTGCTCAATGTGCTCAT 59.251 47.619 16.05 16.05 42.81 2.90
450 497 3.343421 AAACAGTCCGCCGAACGC 61.343 61.111 0.00 0.00 41.76 4.84
535 582 2.995574 CCCCAGACGGACGGACTT 60.996 66.667 0.00 0.00 0.00 3.01
544 592 0.672711 CGGACGGACTTCTTTTCCCC 60.673 60.000 0.00 0.00 0.00 4.81
550 598 1.235724 GACTTCTTTTCCCCACGTGG 58.764 55.000 28.26 28.26 0.00 4.94
627 683 4.193334 CGCTCCTCGACGGCATCA 62.193 66.667 0.00 0.00 41.67 3.07
628 684 2.184322 GCTCCTCGACGGCATCAA 59.816 61.111 0.00 0.00 0.00 2.57
786 865 4.463879 CTGCTCCGCCACCTCCAG 62.464 72.222 0.00 0.00 0.00 3.86
793 872 2.270527 GCCACCTCCAGCTTCTCC 59.729 66.667 0.00 0.00 0.00 3.71
817 901 2.997315 TCACGGAGGAGCAGTGGG 60.997 66.667 0.00 0.00 42.10 4.61
872 957 2.978010 GGCCCCACGTTGTCAGTG 60.978 66.667 0.00 0.00 39.19 3.66
891 976 2.280797 TCACTGCGCCAACCACTC 60.281 61.111 4.18 0.00 0.00 3.51
892 977 2.281070 CACTGCGCCAACCACTCT 60.281 61.111 4.18 0.00 0.00 3.24
893 978 2.281070 ACTGCGCCAACCACTCTG 60.281 61.111 4.18 0.00 0.00 3.35
894 979 2.281070 CTGCGCCAACCACTCTGT 60.281 61.111 4.18 0.00 0.00 3.41
895 980 1.005037 CTGCGCCAACCACTCTGTA 60.005 57.895 4.18 0.00 0.00 2.74
896 981 0.602638 CTGCGCCAACCACTCTGTAA 60.603 55.000 4.18 0.00 0.00 2.41
897 982 0.602638 TGCGCCAACCACTCTGTAAG 60.603 55.000 4.18 0.00 0.00 2.34
898 983 1.912371 GCGCCAACCACTCTGTAAGC 61.912 60.000 0.00 0.00 0.00 3.09
969 1077 1.511464 GATCGCTCGTCAACGTCGT 60.511 57.895 15.13 0.00 40.80 4.34
1091 1217 4.410400 CAACCCCACCCCTCGAGC 62.410 72.222 6.99 0.00 0.00 5.03
1546 1868 1.148157 CGCATCGGTGAGACATCCAC 61.148 60.000 0.00 0.00 0.00 4.02
1815 2223 8.080417 CCCAAAATGAATGATAACTGCATAGAG 58.920 37.037 0.00 0.00 0.00 2.43
1878 2286 3.067721 AGAGCGTTTAGATCACTACGC 57.932 47.619 22.66 22.66 41.29 4.42
2038 2457 8.237811 ACTGCTTTAATTTCTTCTCTTGGAAA 57.762 30.769 0.00 0.00 36.17 3.13
2077 2496 4.425772 TCTGGTTCTCAGTATTTCTCCCA 58.574 43.478 0.00 0.00 43.76 4.37
2088 2603 6.214615 TCAGTATTTCTCCCACTGATACCAAA 59.785 38.462 0.00 0.00 42.75 3.28
2089 2604 6.884295 CAGTATTTCTCCCACTGATACCAAAA 59.116 38.462 0.00 0.00 41.80 2.44
2090 2605 7.066284 CAGTATTTCTCCCACTGATACCAAAAG 59.934 40.741 0.00 0.00 41.80 2.27
2091 2606 4.993705 TTCTCCCACTGATACCAAAAGT 57.006 40.909 0.00 0.00 0.00 2.66
2092 2607 4.286297 TCTCCCACTGATACCAAAAGTG 57.714 45.455 0.00 0.00 40.81 3.16
2093 2608 3.650942 TCTCCCACTGATACCAAAAGTGT 59.349 43.478 0.00 0.00 39.75 3.55
2094 2609 4.104102 TCTCCCACTGATACCAAAAGTGTT 59.896 41.667 0.00 0.00 39.75 3.32
2095 2610 4.798882 TCCCACTGATACCAAAAGTGTTT 58.201 39.130 0.00 0.00 39.75 2.83
2096 2611 5.205056 TCCCACTGATACCAAAAGTGTTTT 58.795 37.500 0.00 0.00 39.75 2.43
2097 2612 5.659079 TCCCACTGATACCAAAAGTGTTTTT 59.341 36.000 0.00 0.00 39.75 1.94
2157 2672 8.140677 GAGAATCTTCCTCTGATGTGTATTTG 57.859 38.462 0.00 0.00 0.00 2.32
2290 2805 1.138069 ACCGTGACAACAGACATCACA 59.862 47.619 4.65 0.00 42.37 3.58
2407 2961 2.380064 TTGTGACCCCAAATGAAGCT 57.620 45.000 0.00 0.00 0.00 3.74
2482 3036 6.037830 TCAAAGTAGGGAAAAACTTGAACTCG 59.962 38.462 0.00 0.00 36.12 4.18
2593 3173 5.008415 AGCAATTGAAGTTCTTGACAGACTG 59.992 40.000 10.34 0.00 0.00 3.51
2669 3249 5.592282 TCAGTGTGATGTTGTATGGTGTTTT 59.408 36.000 0.00 0.00 0.00 2.43
2966 3554 6.382869 AAAGCTGGTATTGCACTTATGATC 57.617 37.500 0.00 0.00 0.00 2.92
3014 3602 0.609957 TGGGCTTTGCTGGTCATCTG 60.610 55.000 0.00 0.00 0.00 2.90
3069 3657 6.622833 ATTGTGAAAATTCCCTGCAAAAAG 57.377 33.333 0.00 0.00 0.00 2.27
3070 3658 5.096443 TGTGAAAATTCCCTGCAAAAAGT 57.904 34.783 0.00 0.00 0.00 2.66
3077 3665 9.140286 GAAAATTCCCTGCAAAAAGTATTACTC 57.860 33.333 0.00 0.00 0.00 2.59
3079 3667 4.595986 TCCCTGCAAAAAGTATTACTCCC 58.404 43.478 0.00 0.00 0.00 4.30
3080 3668 4.291249 TCCCTGCAAAAAGTATTACTCCCT 59.709 41.667 0.00 0.00 0.00 4.20
3081 3669 4.640647 CCCTGCAAAAAGTATTACTCCCTC 59.359 45.833 0.00 0.00 0.00 4.30
3083 3671 5.355350 CCTGCAAAAAGTATTACTCCCTCAG 59.645 44.000 0.00 2.45 0.00 3.35
3084 3672 5.876357 TGCAAAAAGTATTACTCCCTCAGT 58.124 37.500 0.00 0.00 39.41 3.41
3086 3674 6.430000 TGCAAAAAGTATTACTCCCTCAGTTC 59.570 38.462 0.00 0.00 36.43 3.01
3087 3675 6.127980 GCAAAAAGTATTACTCCCTCAGTTCC 60.128 42.308 0.00 0.00 36.43 3.62
3088 3676 6.697641 AAAAGTATTACTCCCTCAGTTCCA 57.302 37.500 0.00 0.00 36.43 3.53
3089 3677 6.893020 AAAGTATTACTCCCTCAGTTCCAT 57.107 37.500 0.00 0.00 36.43 3.41
3090 3678 7.989947 AAAGTATTACTCCCTCAGTTCCATA 57.010 36.000 0.00 0.00 36.43 2.74
3091 3679 7.989947 AAGTATTACTCCCTCAGTTCCATAA 57.010 36.000 0.00 0.00 36.43 1.90
3093 3681 9.670442 AAGTATTACTCCCTCAGTTCCATAATA 57.330 33.333 0.00 0.00 36.43 0.98
3094 3682 9.670442 AGTATTACTCCCTCAGTTCCATAATAA 57.330 33.333 0.00 0.00 36.43 1.40
3095 3683 9.930693 GTATTACTCCCTCAGTTCCATAATAAG 57.069 37.037 0.00 0.00 36.43 1.73
3097 3685 6.240549 ACTCCCTCAGTTCCATAATAAGTG 57.759 41.667 0.00 0.00 26.56 3.16
3098 3686 5.726793 ACTCCCTCAGTTCCATAATAAGTGT 59.273 40.000 0.00 0.00 26.56 3.55
3099 3687 6.127026 ACTCCCTCAGTTCCATAATAAGTGTC 60.127 42.308 0.00 0.00 26.56 3.67
3100 3688 5.050490 CCCTCAGTTCCATAATAAGTGTCG 58.950 45.833 0.00 0.00 0.00 4.35
3101 3689 5.395324 CCCTCAGTTCCATAATAAGTGTCGT 60.395 44.000 0.00 0.00 0.00 4.34
3102 3690 5.520288 CCTCAGTTCCATAATAAGTGTCGTG 59.480 44.000 0.00 0.00 0.00 4.35
3104 3692 6.873997 TCAGTTCCATAATAAGTGTCGTGAT 58.126 36.000 0.00 0.00 0.00 3.06
3105 3693 7.327975 TCAGTTCCATAATAAGTGTCGTGATT 58.672 34.615 0.00 0.00 0.00 2.57
3106 3694 7.822334 TCAGTTCCATAATAAGTGTCGTGATTT 59.178 33.333 0.00 0.00 0.00 2.17
3107 3695 8.450964 CAGTTCCATAATAAGTGTCGTGATTTT 58.549 33.333 0.00 0.00 0.00 1.82
3108 3696 9.661563 AGTTCCATAATAAGTGTCGTGATTTTA 57.338 29.630 0.00 0.00 0.00 1.52
3109 3697 9.916397 GTTCCATAATAAGTGTCGTGATTTTAG 57.084 33.333 0.00 0.00 0.00 1.85
3110 3698 9.661563 TTCCATAATAAGTGTCGTGATTTTAGT 57.338 29.630 0.00 0.00 0.00 2.24
3112 3700 9.916397 CCATAATAAGTGTCGTGATTTTAGTTC 57.084 33.333 0.00 0.00 0.00 3.01
3120 3708 8.402472 AGTGTCGTGATTTTAGTTCAAAATTGA 58.598 29.630 0.00 0.00 44.98 2.57
3133 3721 6.745159 TTCAAAATTGAAATGATGGCATGG 57.255 33.333 3.81 0.00 43.62 3.66
3163 3776 4.764172 ACTAGAAATGATGGCTGTCAGAC 58.236 43.478 3.32 0.00 0.00 3.51
3188 3801 4.767409 AGGTGCTTAAATGGTTCTTCTTCC 59.233 41.667 0.00 0.00 0.00 3.46
3367 4007 7.894376 ATTTCAGCTTGTTTTCATGTAATGG 57.106 32.000 0.00 0.00 46.73 3.16
3420 4086 2.833794 TGCTGTTACCTGTCAGTTGTC 58.166 47.619 0.00 0.00 34.57 3.18
3432 4098 6.381420 ACCTGTCAGTTGTCTATTGCTACTAT 59.619 38.462 0.00 0.00 0.00 2.12
3434 4100 7.170393 TGTCAGTTGTCTATTGCTACTATGT 57.830 36.000 0.00 0.00 0.00 2.29
3488 4154 5.241285 TGCTGACATCTCAAAGCAAAATACA 59.759 36.000 0.00 0.00 27.55 2.29
3612 4279 3.507411 TCTCTGGCCTGTACTTACTGTT 58.493 45.455 3.32 0.00 0.00 3.16
3701 4368 4.808895 GGTTTCCTTCATTTGGACAACAAC 59.191 41.667 0.00 0.00 39.19 3.32
3719 4386 4.870636 ACAACAATGGATGGGTATGTCAT 58.129 39.130 0.00 0.00 0.00 3.06
3724 4391 5.547666 ACAATGGATGGGTATGTCATAGCTA 59.452 40.000 18.89 14.73 33.88 3.32
3730 4397 5.791336 TGGGTATGTCATAGCTAACTCAG 57.209 43.478 18.89 0.00 33.88 3.35
3731 4398 5.208890 TGGGTATGTCATAGCTAACTCAGT 58.791 41.667 18.89 0.00 33.88 3.41
3737 4404 4.945543 TGTCATAGCTAACTCAGTAACCGA 59.054 41.667 0.00 0.00 0.00 4.69
3738 4405 5.416639 TGTCATAGCTAACTCAGTAACCGAA 59.583 40.000 0.00 0.00 0.00 4.30
3748 4416 5.805728 ACTCAGTAACCGAAATTCCTGAAT 58.194 37.500 1.74 0.00 0.00 2.57
3790 4573 6.545666 TCAACATTCAAAATACTGTGGTCACT 59.454 34.615 2.66 0.00 0.00 3.41
3811 4594 8.190784 GTCACTTAAAAATATAGCCAGTTGCAT 58.809 33.333 0.00 0.00 44.83 3.96
3825 4615 5.664457 CCAGTTGCATACATTGTCTAGAGA 58.336 41.667 0.00 0.00 0.00 3.10
3834 4624 7.439356 GCATACATTGTCTAGAGATGCAGTAAA 59.561 37.037 12.76 0.00 38.43 2.01
3835 4625 8.759641 CATACATTGTCTAGAGATGCAGTAAAC 58.240 37.037 13.41 0.00 0.00 2.01
3836 4626 6.940739 ACATTGTCTAGAGATGCAGTAAACT 58.059 36.000 13.41 0.00 0.00 2.66
3837 4627 7.390027 ACATTGTCTAGAGATGCAGTAAACTT 58.610 34.615 13.41 0.00 0.00 2.66
3838 4628 8.531982 ACATTGTCTAGAGATGCAGTAAACTTA 58.468 33.333 13.41 0.00 0.00 2.24
3839 4629 9.371136 CATTGTCTAGAGATGCAGTAAACTTAA 57.629 33.333 0.00 0.00 0.00 1.85
3841 4631 9.944376 TTGTCTAGAGATGCAGTAAACTTAATT 57.056 29.630 0.00 0.00 0.00 1.40
3879 4669 3.391296 TCAGATACCTTTACATGGCCTCC 59.609 47.826 3.32 0.00 0.00 4.30
3884 4674 0.625849 CTTTACATGGCCTCCCACCT 59.374 55.000 3.32 0.00 45.77 4.00
3885 4675 1.843851 CTTTACATGGCCTCCCACCTA 59.156 52.381 3.32 0.00 45.77 3.08
3886 4676 1.507140 TTACATGGCCTCCCACCTAG 58.493 55.000 3.32 0.00 45.77 3.02
3894 4684 2.633481 GGCCTCCCACCTAGTATTACAG 59.367 54.545 0.00 0.00 0.00 2.74
3951 4748 5.820131 TGAAAATATGCATAAGAGTTGCCG 58.180 37.500 11.13 0.00 39.39 5.69
3963 4767 5.613358 AAGAGTTGCCGATTGAAAGTAAG 57.387 39.130 0.00 0.00 0.00 2.34
3974 4778 7.519002 CCGATTGAAAGTAAGGTGTTCTTTAG 58.481 38.462 0.00 0.00 36.93 1.85
4009 4813 3.419915 ACTACGTCTAAACACGCATACG 58.580 45.455 0.00 0.00 43.93 3.06
4047 4852 4.394920 TCAGAAATGAAGATGGTTAACGCC 59.605 41.667 0.00 0.00 0.00 5.68
4061 4866 3.234730 CGCCCGCCTTATCCTCCT 61.235 66.667 0.00 0.00 0.00 3.69
4088 4893 7.663493 GGAGGAACTTTATAAAGCATATCAGCT 59.337 37.037 22.45 10.54 44.54 4.24
4189 4996 4.141914 GCCATATATAGCGGTAAAGCTCCT 60.142 45.833 0.00 0.00 45.67 3.69
4456 5273 6.624352 TCAGTGAAAGAGAAGATTTTGTGG 57.376 37.500 0.00 0.00 0.00 4.17
4502 5320 3.901844 CGAAGGGTGAGAGGGGATTAATA 59.098 47.826 0.00 0.00 0.00 0.98
4503 5321 4.021016 CGAAGGGTGAGAGGGGATTAATAG 60.021 50.000 0.00 0.00 0.00 1.73
4504 5322 3.252351 AGGGTGAGAGGGGATTAATAGC 58.748 50.000 0.00 0.00 0.00 2.97
4506 5324 3.262151 GGGTGAGAGGGGATTAATAGCTC 59.738 52.174 0.00 0.00 0.00 4.09
4507 5325 3.262151 GGTGAGAGGGGATTAATAGCTCC 59.738 52.174 0.00 0.00 0.00 4.70
4508 5326 3.056465 GTGAGAGGGGATTAATAGCTCCG 60.056 52.174 0.00 0.00 31.95 4.63
4538 5387 9.941325 GAAGATCAGACCATGTGATTTCTATAT 57.059 33.333 0.00 0.00 34.69 0.86
4570 5419 0.553333 AGGGAGGCCTCTATTTTGCC 59.447 55.000 31.36 21.40 45.70 4.52
4571 5420 0.468214 GGGAGGCCTCTATTTTGCCC 60.468 60.000 31.36 18.83 46.55 5.36
4605 5460 5.619625 AGTTATTGCTGAAGAAAGAGCAC 57.380 39.130 0.00 0.00 44.81 4.40
4610 5465 3.216800 TGCTGAAGAAAGAGCACACAAT 58.783 40.909 0.00 0.00 40.30 2.71
4657 5555 5.535030 ACAGCTAAAAGGGGAAACTGTAAAG 59.465 40.000 0.00 0.00 35.27 1.85
4778 5692 0.681733 CTAGACCACTGGTGCTGTGT 59.318 55.000 5.10 0.00 35.25 3.72
4782 5696 0.034574 ACCACTGGTGCTGTGTTGAA 60.035 50.000 0.00 0.00 32.98 2.69
4788 5702 3.509575 ACTGGTGCTGTGTTGAAAGAAAA 59.490 39.130 0.00 0.00 0.00 2.29
4789 5703 4.160252 ACTGGTGCTGTGTTGAAAGAAAAT 59.840 37.500 0.00 0.00 0.00 1.82
4823 5738 9.391006 AGCCTATAATATTTGTTCTTTCGACAA 57.609 29.630 0.00 0.00 35.36 3.18
4831 5835 4.336889 TGTTCTTTCGACAAGATCTGGT 57.663 40.909 1.12 1.12 0.00 4.00
4834 5838 3.664107 TCTTTCGACAAGATCTGGTTGG 58.336 45.455 16.30 6.76 0.00 3.77
4838 5842 1.067846 CGACAAGATCTGGTTGGTCGA 60.068 52.381 20.24 0.00 33.82 4.20
4852 5856 2.048222 TCGACGAGTACGACCGGT 60.048 61.111 6.92 6.92 42.66 5.28
4853 5857 2.097160 CGACGAGTACGACCGGTG 59.903 66.667 14.63 7.23 42.66 4.94
4854 5858 2.482374 GACGAGTACGACCGGTGG 59.518 66.667 14.63 15.34 42.66 4.61
4855 5859 3.673867 GACGAGTACGACCGGTGGC 62.674 68.421 14.63 0.00 42.66 5.01
4856 5860 4.487412 CGAGTACGACCGGTGGCC 62.487 72.222 14.63 5.09 42.66 5.36
4857 5861 3.066814 GAGTACGACCGGTGGCCT 61.067 66.667 14.63 10.92 0.00 5.19
4858 5862 1.750399 GAGTACGACCGGTGGCCTA 60.750 63.158 14.63 0.00 0.00 3.93
4859 5863 1.997928 GAGTACGACCGGTGGCCTAC 61.998 65.000 14.63 10.73 0.00 3.18
4860 5864 3.133464 TACGACCGGTGGCCTACG 61.133 66.667 14.63 11.31 0.00 3.51
4910 9117 1.972660 GCCCTCAGCCGACACCTATT 61.973 60.000 0.00 0.00 34.35 1.73
4925 9132 1.647545 CTATTATGCATGGGCCGGCG 61.648 60.000 22.54 7.65 40.13 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.269453 GACTAGTCTTGAGGCTAAAAACTTTTA 57.731 33.333 15.91 0.00 0.00 1.52
31 32 7.228906 GGACTAGTCTTGAGGCTAAAAACTTTT 59.771 37.037 21.88 0.00 0.00 2.27
32 33 6.711194 GGACTAGTCTTGAGGCTAAAAACTTT 59.289 38.462 21.88 0.00 0.00 2.66
33 34 6.043358 AGGACTAGTCTTGAGGCTAAAAACTT 59.957 38.462 21.88 0.00 0.00 2.66
34 35 5.544562 AGGACTAGTCTTGAGGCTAAAAACT 59.455 40.000 21.88 0.00 0.00 2.66
35 36 5.795972 AGGACTAGTCTTGAGGCTAAAAAC 58.204 41.667 21.88 0.73 0.00 2.43
36 37 6.351117 GCTAGGACTAGTCTTGAGGCTAAAAA 60.351 42.308 21.88 0.00 35.65 1.94
37 38 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
38 39 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
39 40 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
40 41 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
41 42 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
42 43 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
43 44 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
49 50 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
50 51 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
51 52 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
52 53 5.398126 CCTGACTAAAGAGAGGCTAGGACTA 60.398 48.000 0.00 0.00 29.08 2.59
53 54 4.532834 CTGACTAAAGAGAGGCTAGGACT 58.467 47.826 0.00 0.00 0.00 3.85
54 55 3.634910 CCTGACTAAAGAGAGGCTAGGAC 59.365 52.174 0.00 0.00 29.08 3.85
55 56 3.373220 CCCTGACTAAAGAGAGGCTAGGA 60.373 52.174 0.00 0.00 29.08 2.94
56 57 2.962421 CCCTGACTAAAGAGAGGCTAGG 59.038 54.545 0.00 0.00 0.00 3.02
57 58 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
58 59 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
59 60 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
60 61 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
61 62 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
62 63 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
63 64 2.327325 AGCACCCCTGACTAAAGAGA 57.673 50.000 0.00 0.00 0.00 3.10
64 65 2.675317 CGAAGCACCCCTGACTAAAGAG 60.675 54.545 0.00 0.00 0.00 2.85
65 66 1.275291 CGAAGCACCCCTGACTAAAGA 59.725 52.381 0.00 0.00 0.00 2.52
66 67 1.275291 TCGAAGCACCCCTGACTAAAG 59.725 52.381 0.00 0.00 0.00 1.85
67 68 1.344065 TCGAAGCACCCCTGACTAAA 58.656 50.000 0.00 0.00 0.00 1.85
68 69 1.001633 GTTCGAAGCACCCCTGACTAA 59.998 52.381 0.00 0.00 0.00 2.24
69 70 0.606604 GTTCGAAGCACCCCTGACTA 59.393 55.000 0.00 0.00 0.00 2.59
70 71 1.122019 AGTTCGAAGCACCCCTGACT 61.122 55.000 0.00 0.00 0.00 3.41
71 72 0.250338 AAGTTCGAAGCACCCCTGAC 60.250 55.000 0.00 0.00 0.00 3.51
72 73 0.472471 AAAGTTCGAAGCACCCCTGA 59.528 50.000 0.00 0.00 0.00 3.86
73 74 2.076863 CTAAAGTTCGAAGCACCCCTG 58.923 52.381 0.00 0.00 0.00 4.45
74 75 1.610886 GCTAAAGTTCGAAGCACCCCT 60.611 52.381 0.00 0.00 36.26 4.79
75 76 0.803117 GCTAAAGTTCGAAGCACCCC 59.197 55.000 0.00 0.00 36.26 4.95
76 77 0.803117 GGCTAAAGTTCGAAGCACCC 59.197 55.000 0.00 0.00 38.01 4.61
77 78 1.732809 GAGGCTAAAGTTCGAAGCACC 59.267 52.381 0.00 0.00 38.01 5.01
78 79 2.689646 AGAGGCTAAAGTTCGAAGCAC 58.310 47.619 0.00 0.00 38.01 4.40
79 80 4.530710 TTAGAGGCTAAAGTTCGAAGCA 57.469 40.909 0.00 0.00 38.01 3.91
80 81 5.857822 TTTTAGAGGCTAAAGTTCGAAGC 57.142 39.130 0.00 0.00 35.47 3.86
81 82 7.041984 AGTGTTTTTAGAGGCTAAAGTTCGAAG 60.042 37.037 0.00 0.00 0.00 3.79
82 83 6.764560 AGTGTTTTTAGAGGCTAAAGTTCGAA 59.235 34.615 0.00 0.00 0.00 3.71
83 84 6.285990 AGTGTTTTTAGAGGCTAAAGTTCGA 58.714 36.000 0.00 0.00 0.00 3.71
84 85 6.541111 AGTGTTTTTAGAGGCTAAAGTTCG 57.459 37.500 0.00 0.00 0.00 3.95
91 92 8.953313 GGCTAAAAATAGTGTTTTTAGAGGCTA 58.047 33.333 32.37 10.11 46.75 3.93
92 93 7.450323 TGGCTAAAAATAGTGTTTTTAGAGGCT 59.550 33.333 32.37 8.20 46.75 4.58
93 94 7.599171 TGGCTAAAAATAGTGTTTTTAGAGGC 58.401 34.615 32.37 25.63 46.75 4.70
94 95 9.010029 TCTGGCTAAAAATAGTGTTTTTAGAGG 57.990 33.333 32.37 23.68 46.75 3.69
95 96 9.827411 GTCTGGCTAAAAATAGTGTTTTTAGAG 57.173 33.333 32.37 24.91 46.75 2.43
96 97 9.569122 AGTCTGGCTAAAAATAGTGTTTTTAGA 57.431 29.630 32.37 19.57 46.75 2.10
110 111 7.696017 AGGGACTATTTTTAGTCTGGCTAAAA 58.304 34.615 20.04 20.04 46.14 1.52
111 112 7.266905 AGGGACTATTTTTAGTCTGGCTAAA 57.733 36.000 10.24 10.24 44.35 1.85
112 113 6.886178 AGGGACTATTTTTAGTCTGGCTAA 57.114 37.500 11.69 0.00 44.35 3.09
113 114 6.442564 TCAAGGGACTATTTTTAGTCTGGCTA 59.557 38.462 11.69 0.00 44.35 3.93
114 115 5.250774 TCAAGGGACTATTTTTAGTCTGGCT 59.749 40.000 11.69 0.00 44.35 4.75
115 116 5.497474 TCAAGGGACTATTTTTAGTCTGGC 58.503 41.667 11.69 0.00 44.35 4.85
116 117 7.283354 GGATTCAAGGGACTATTTTTAGTCTGG 59.717 40.741 11.69 2.15 44.35 3.86
117 118 7.829211 TGGATTCAAGGGACTATTTTTAGTCTG 59.171 37.037 11.69 4.52 44.35 3.51
118 119 7.928873 TGGATTCAAGGGACTATTTTTAGTCT 58.071 34.615 11.69 0.00 44.35 3.24
119 120 8.575649 TTGGATTCAAGGGACTATTTTTAGTC 57.424 34.615 4.87 4.87 44.23 2.59
120 121 8.803235 GTTTGGATTCAAGGGACTATTTTTAGT 58.197 33.333 0.00 0.00 38.49 2.24
121 122 8.802267 TGTTTGGATTCAAGGGACTATTTTTAG 58.198 33.333 0.00 0.00 38.49 1.85
122 123 8.581578 GTGTTTGGATTCAAGGGACTATTTTTA 58.418 33.333 0.00 0.00 38.49 1.52
123 124 7.441836 GTGTTTGGATTCAAGGGACTATTTTT 58.558 34.615 0.00 0.00 38.49 1.94
124 125 6.014584 GGTGTTTGGATTCAAGGGACTATTTT 60.015 38.462 0.00 0.00 38.49 1.82
125 126 5.480422 GGTGTTTGGATTCAAGGGACTATTT 59.520 40.000 0.00 0.00 38.49 1.40
126 127 5.016831 GGTGTTTGGATTCAAGGGACTATT 58.983 41.667 0.00 0.00 38.49 1.73
127 128 4.569865 GGGTGTTTGGATTCAAGGGACTAT 60.570 45.833 0.00 0.00 38.49 2.12
128 129 3.245122 GGGTGTTTGGATTCAAGGGACTA 60.245 47.826 0.00 0.00 38.49 2.59
130 131 1.893137 GGGTGTTTGGATTCAAGGGAC 59.107 52.381 0.00 0.00 33.98 4.46
131 132 1.786441 AGGGTGTTTGGATTCAAGGGA 59.214 47.619 0.00 0.00 33.98 4.20
132 133 2.171003 GAGGGTGTTTGGATTCAAGGG 58.829 52.381 0.00 0.00 33.98 3.95
133 134 2.875296 TGAGGGTGTTTGGATTCAAGG 58.125 47.619 0.00 0.00 33.98 3.61
134 135 5.256474 ACTATGAGGGTGTTTGGATTCAAG 58.744 41.667 0.00 0.00 33.98 3.02
135 136 5.255397 ACTATGAGGGTGTTTGGATTCAA 57.745 39.130 0.00 0.00 0.00 2.69
136 137 4.927267 ACTATGAGGGTGTTTGGATTCA 57.073 40.909 0.00 0.00 0.00 2.57
137 138 8.211629 AGTAATACTATGAGGGTGTTTGGATTC 58.788 37.037 0.00 0.00 0.00 2.52
138 139 8.102484 AGTAATACTATGAGGGTGTTTGGATT 57.898 34.615 0.00 0.00 0.00 3.01
139 140 7.691993 AGTAATACTATGAGGGTGTTTGGAT 57.308 36.000 0.00 0.00 0.00 3.41
140 141 8.792830 ATAGTAATACTATGAGGGTGTTTGGA 57.207 34.615 11.79 0.00 39.76 3.53
144 145 8.804204 GCACTATAGTAATACTATGAGGGTGTT 58.196 37.037 20.02 0.00 41.23 3.32
145 146 7.948447 TGCACTATAGTAATACTATGAGGGTGT 59.052 37.037 20.02 8.41 41.23 4.16
146 147 8.349568 TGCACTATAGTAATACTATGAGGGTG 57.650 38.462 20.02 20.00 41.23 4.61
147 148 8.951614 TTGCACTATAGTAATACTATGAGGGT 57.048 34.615 20.02 11.63 41.23 4.34
148 149 7.976734 GCTTGCACTATAGTAATACTATGAGGG 59.023 40.741 20.02 15.07 41.23 4.30
149 150 8.744652 AGCTTGCACTATAGTAATACTATGAGG 58.255 37.037 20.02 13.05 41.23 3.86
159 160 9.261180 GTTGATGATAAGCTTGCACTATAGTAA 57.739 33.333 9.86 0.00 0.00 2.24
188 189 4.335594 GGCACCACTTTTGTATGGATCTAC 59.664 45.833 0.00 0.00 39.46 2.59
250 255 6.713903 AGTTAATGATTGATTCTCGCCATCAT 59.286 34.615 0.00 0.00 30.63 2.45
301 306 3.150767 CCCGTACCCATTGTCTCAAAAA 58.849 45.455 0.00 0.00 0.00 1.94
302 307 2.785562 CCCGTACCCATTGTCTCAAAA 58.214 47.619 0.00 0.00 0.00 2.44
303 308 1.612199 GCCCGTACCCATTGTCTCAAA 60.612 52.381 0.00 0.00 0.00 2.69
304 309 0.035820 GCCCGTACCCATTGTCTCAA 60.036 55.000 0.00 0.00 0.00 3.02
309 314 1.001393 CCAAGCCCGTACCCATTGT 60.001 57.895 0.00 0.00 0.00 2.71
310 315 2.414785 GCCAAGCCCGTACCCATTG 61.415 63.158 0.00 0.00 0.00 2.82
312 317 3.334891 TGCCAAGCCCGTACCCAT 61.335 61.111 0.00 0.00 0.00 4.00
313 318 4.338710 GTGCCAAGCCCGTACCCA 62.339 66.667 0.00 0.00 0.00 4.51
317 344 3.599285 CTTCGGTGCCAAGCCCGTA 62.599 63.158 13.59 6.18 40.98 4.02
346 373 1.135489 GGCACTCGTACGTGATGAAGA 60.135 52.381 22.86 0.00 37.06 2.87
357 384 1.736126 CTCGTTCTACTGGCACTCGTA 59.264 52.381 0.00 0.00 0.00 3.43
362 389 1.448013 GCCCTCGTTCTACTGGCAC 60.448 63.158 0.00 0.00 41.76 5.01
366 393 0.179073 CATGGGCCCTCGTTCTACTG 60.179 60.000 25.70 2.63 0.00 2.74
367 394 1.972660 GCATGGGCCCTCGTTCTACT 61.973 60.000 25.70 0.00 0.00 2.57
368 395 1.523938 GCATGGGCCCTCGTTCTAC 60.524 63.158 25.70 0.00 0.00 2.59
535 582 4.889807 CACCACGTGGGGAAAAGA 57.110 55.556 36.47 0.00 42.67 2.52
786 865 1.137825 CGTGACGGAGAGGAGAAGC 59.862 63.158 0.00 0.00 0.00 3.86
872 957 3.660111 GTGGTTGGCGCAGTGACC 61.660 66.667 10.83 11.65 0.00 4.02
874 959 2.280797 GAGTGGTTGGCGCAGTGA 60.281 61.111 10.83 0.00 0.00 3.41
891 976 4.865365 GCCGCTTTCTATATAGGCTTACAG 59.135 45.833 9.89 0.00 41.21 2.74
892 977 4.322499 GGCCGCTTTCTATATAGGCTTACA 60.322 45.833 9.89 0.00 43.68 2.41
893 978 4.182339 GGCCGCTTTCTATATAGGCTTAC 58.818 47.826 9.89 0.00 43.68 2.34
894 979 3.119245 CGGCCGCTTTCTATATAGGCTTA 60.119 47.826 14.67 0.00 43.68 3.09
895 980 2.353803 CGGCCGCTTTCTATATAGGCTT 60.354 50.000 14.67 0.00 43.68 4.35
896 981 1.204941 CGGCCGCTTTCTATATAGGCT 59.795 52.381 14.67 0.00 43.68 4.58
897 982 1.641577 CGGCCGCTTTCTATATAGGC 58.358 55.000 14.67 5.03 43.47 3.93
898 983 1.739371 GCCGGCCGCTTTCTATATAGG 60.739 57.143 22.85 1.58 0.00 2.57
1194 1323 1.745489 GAAGCCGAACGCCTCCATT 60.745 57.895 0.00 0.00 38.78 3.16
1383 1578 4.436998 GTGACGGAGGGGAGCACG 62.437 72.222 0.00 0.00 0.00 5.34
1546 1868 4.389374 AGTATGAAGACAAACAGGTGTGG 58.611 43.478 0.00 0.00 0.00 4.17
1548 1870 5.552870 AGAGTATGAAGACAAACAGGTGT 57.447 39.130 0.00 0.00 0.00 4.16
1878 2286 6.137559 AGAGTCCCTTAATTACTACTCCCTG 58.862 44.000 10.07 0.00 35.13 4.45
2120 2635 5.694995 AGGAAGATTCTCTTGTCCAAACAA 58.305 37.500 5.20 0.00 43.06 2.83
2157 2672 4.805719 CCTTTGTTGGAGAAAAGAACAAGC 59.194 41.667 0.00 0.00 39.90 4.01
2407 2961 2.843401 ATTTTGCAGCCAATTGAGCA 57.157 40.000 17.54 15.64 34.79 4.26
2482 3036 4.479786 AGCCTTCAGAACTTCTATGTCC 57.520 45.455 0.00 0.00 0.00 4.02
2593 3173 5.467705 ACATAGTGAGAGTACAAACCGTTC 58.532 41.667 0.00 0.00 0.00 3.95
2966 3554 1.602851 CTAGTCTCGACCATACCACCG 59.397 57.143 0.00 0.00 0.00 4.94
3069 3657 9.930693 CTTATTATGGAACTGAGGGAGTAATAC 57.069 37.037 0.00 0.00 33.09 1.89
3070 3658 9.670442 ACTTATTATGGAACTGAGGGAGTAATA 57.330 33.333 0.00 0.00 33.09 0.98
3077 3665 5.050490 CGACACTTATTATGGAACTGAGGG 58.950 45.833 0.00 0.00 0.00 4.30
3079 3667 6.330278 TCACGACACTTATTATGGAACTGAG 58.670 40.000 0.00 0.00 0.00 3.35
3080 3668 6.275494 TCACGACACTTATTATGGAACTGA 57.725 37.500 0.00 0.00 0.00 3.41
3081 3669 7.539712 AATCACGACACTTATTATGGAACTG 57.460 36.000 0.00 0.00 0.00 3.16
3083 3671 9.916397 CTAAAATCACGACACTTATTATGGAAC 57.084 33.333 0.00 0.00 0.00 3.62
3084 3672 9.661563 ACTAAAATCACGACACTTATTATGGAA 57.338 29.630 0.00 0.00 0.00 3.53
3086 3674 9.916397 GAACTAAAATCACGACACTTATTATGG 57.084 33.333 0.00 0.00 0.00 2.74
3093 3681 9.019764 CAATTTTGAACTAAAATCACGACACTT 57.980 29.630 0.00 0.00 45.74 3.16
3094 3682 8.402472 TCAATTTTGAACTAAAATCACGACACT 58.598 29.630 0.00 0.00 45.74 3.55
3095 3683 8.555166 TCAATTTTGAACTAAAATCACGACAC 57.445 30.769 0.00 0.00 45.74 3.67
3104 3692 9.334947 TGCCATCATTTCAATTTTGAACTAAAA 57.665 25.926 5.26 0.00 45.99 1.52
3105 3693 8.899427 TGCCATCATTTCAATTTTGAACTAAA 57.101 26.923 5.26 0.00 45.99 1.85
3106 3694 8.937884 CATGCCATCATTTCAATTTTGAACTAA 58.062 29.630 5.26 0.00 45.99 2.24
3107 3695 7.549842 CCATGCCATCATTTCAATTTTGAACTA 59.450 33.333 5.26 0.00 45.99 2.24
3108 3696 6.373216 CCATGCCATCATTTCAATTTTGAACT 59.627 34.615 5.26 0.00 45.99 3.01
3109 3697 6.372103 TCCATGCCATCATTTCAATTTTGAAC 59.628 34.615 5.26 0.00 45.99 3.18
3110 3698 6.473758 TCCATGCCATCATTTCAATTTTGAA 58.526 32.000 1.66 1.66 44.78 2.69
3112 3700 5.878116 ACTCCATGCCATCATTTCAATTTTG 59.122 36.000 0.00 0.00 0.00 2.44
3113 3701 6.057321 ACTCCATGCCATCATTTCAATTTT 57.943 33.333 0.00 0.00 0.00 1.82
3114 3702 5.687166 ACTCCATGCCATCATTTCAATTT 57.313 34.783 0.00 0.00 0.00 1.82
3116 3704 4.712829 TGAACTCCATGCCATCATTTCAAT 59.287 37.500 0.00 0.00 28.35 2.57
3120 3708 4.529377 AGTTTGAACTCCATGCCATCATTT 59.471 37.500 0.00 0.00 32.86 2.32
3122 3710 3.705051 AGTTTGAACTCCATGCCATCAT 58.295 40.909 0.00 0.00 32.86 2.45
3123 3711 3.159213 AGTTTGAACTCCATGCCATCA 57.841 42.857 0.00 0.00 32.86 3.07
3124 3712 4.517285 TCTAGTTTGAACTCCATGCCATC 58.483 43.478 0.00 0.00 40.37 3.51
3125 3713 4.574674 TCTAGTTTGAACTCCATGCCAT 57.425 40.909 0.00 0.00 40.37 4.40
3126 3714 4.365514 TTCTAGTTTGAACTCCATGCCA 57.634 40.909 0.00 0.00 40.37 4.92
3127 3715 5.415701 TCATTTCTAGTTTGAACTCCATGCC 59.584 40.000 0.00 0.00 40.37 4.40
3128 3716 6.500684 TCATTTCTAGTTTGAACTCCATGC 57.499 37.500 0.00 0.00 40.37 4.06
3129 3717 7.478322 CCATCATTTCTAGTTTGAACTCCATG 58.522 38.462 0.00 0.00 40.37 3.66
3130 3718 6.096001 GCCATCATTTCTAGTTTGAACTCCAT 59.904 38.462 0.00 0.00 40.37 3.41
3131 3719 5.415701 GCCATCATTTCTAGTTTGAACTCCA 59.584 40.000 0.00 0.00 40.37 3.86
3132 3720 5.649831 AGCCATCATTTCTAGTTTGAACTCC 59.350 40.000 0.00 0.00 40.37 3.85
3133 3721 6.150140 ACAGCCATCATTTCTAGTTTGAACTC 59.850 38.462 0.00 0.00 40.37 3.01
3163 3776 4.082125 AGAAGAACCATTTAAGCACCTGG 58.918 43.478 0.00 0.00 34.84 4.45
3188 3801 5.234116 GGTCAATAAAACTGCAACCACAAAG 59.766 40.000 0.00 0.00 0.00 2.77
3290 3903 8.449251 AACACATTTACAAAAGGAAATTGCAT 57.551 26.923 0.00 0.00 0.00 3.96
3343 3982 6.369615 GCCATTACATGAAAACAAGCTGAAAT 59.630 34.615 0.00 0.00 0.00 2.17
3350 3989 5.771469 TCTGTGCCATTACATGAAAACAAG 58.229 37.500 0.00 0.00 0.00 3.16
3367 4007 5.124457 ACAATATGGACTGAAACATCTGTGC 59.876 40.000 1.45 1.45 0.00 4.57
3380 4020 8.297470 ACAGCATATTTTTCACAATATGGACT 57.703 30.769 12.96 3.09 43.28 3.85
3432 4098 7.660112 CATTGGAATGCCAGCTTAATAATACA 58.340 34.615 0.00 0.00 46.91 2.29
3488 4154 8.800332 AGATTTTGAACAAACATGAATAGAGCT 58.200 29.630 0.00 0.00 0.00 4.09
3583 4249 0.040351 ACAGGCCAGAGAGCAGAGTA 59.960 55.000 5.01 0.00 0.00 2.59
3584 4250 0.040351 TACAGGCCAGAGAGCAGAGT 59.960 55.000 5.01 0.00 0.00 3.24
3612 4279 8.904834 AGAAGCTGATAATAGAAGTCGAGTAAA 58.095 33.333 0.00 0.00 0.00 2.01
3701 4368 4.914983 AGCTATGACATACCCATCCATTG 58.085 43.478 0.00 0.00 0.00 2.82
3719 4386 6.154021 AGGAATTTCGGTTACTGAGTTAGCTA 59.846 38.462 0.00 0.00 0.00 3.32
3724 4391 5.223449 TCAGGAATTTCGGTTACTGAGTT 57.777 39.130 6.86 0.00 42.63 3.01
3780 4563 7.336931 ACTGGCTATATTTTTAAGTGACCACAG 59.663 37.037 2.78 0.00 0.00 3.66
3811 4594 8.067751 AGTTTACTGCATCTCTAGACAATGTA 57.932 34.615 10.57 6.60 0.00 2.29
3839 4629 8.903820 GGTATCTGACAGGCAAATTTAAGTAAT 58.096 33.333 1.81 0.00 0.00 1.89
3840 4630 8.107095 AGGTATCTGACAGGCAAATTTAAGTAA 58.893 33.333 1.81 0.00 0.00 2.24
3841 4631 7.630082 AGGTATCTGACAGGCAAATTTAAGTA 58.370 34.615 1.81 0.00 0.00 2.24
3879 4669 6.573289 GCCAGATCATCTGTAATACTAGGTGG 60.573 46.154 13.82 0.00 42.80 4.61
3884 4674 7.360113 TGTTGCCAGATCATCTGTAATACTA 57.640 36.000 13.82 0.00 42.80 1.82
3885 4675 6.239217 TGTTGCCAGATCATCTGTAATACT 57.761 37.500 13.82 0.00 42.80 2.12
3886 4676 5.468072 CCTGTTGCCAGATCATCTGTAATAC 59.532 44.000 13.82 6.68 42.80 1.89
3894 4684 1.211457 AGTCCCTGTTGCCAGATCATC 59.789 52.381 0.00 0.00 41.50 2.92
3923 4720 9.910511 GCAACTCTTATGCATATTTTCATTTTG 57.089 29.630 7.36 5.00 43.29 2.44
3951 4748 9.274206 AGACTAAAGAACACCTTACTTTCAATC 57.726 33.333 0.00 0.00 35.79 2.67
4047 4852 2.053618 CTCCAGGAGGATAAGGCGG 58.946 63.158 8.88 0.00 44.70 6.13
4061 4866 7.445402 GCTGATATGCTTTATAAAGTTCCTCCA 59.555 37.037 22.94 13.30 38.28 3.86
4177 4984 5.291128 CAGTACATAAACAGGAGCTTTACCG 59.709 44.000 0.00 0.00 0.00 4.02
4189 4996 6.163476 CAGGACTTACAGCAGTACATAAACA 58.837 40.000 0.00 0.00 28.57 2.83
4377 5194 4.482386 CTCAGAAACATGGAAATGCACAG 58.518 43.478 0.00 0.00 0.00 3.66
4456 5273 0.040781 GAGATGCTCGTAGCCTCGTC 60.041 60.000 4.73 2.20 41.51 4.20
4503 5321 0.529555 GTCTGATCTTCAGCCGGAGC 60.530 60.000 5.05 0.00 43.95 4.70
4504 5322 0.103937 GGTCTGATCTTCAGCCGGAG 59.896 60.000 5.05 0.00 43.95 4.63
4506 5324 0.467384 ATGGTCTGATCTTCAGCCGG 59.533 55.000 0.00 0.00 43.95 6.13
4507 5325 1.134580 ACATGGTCTGATCTTCAGCCG 60.135 52.381 0.00 0.00 43.95 5.52
4508 5326 2.093288 TCACATGGTCTGATCTTCAGCC 60.093 50.000 0.00 5.58 43.95 4.85
4538 5387 1.971357 GCCTCCCTCTCCGATTTCATA 59.029 52.381 0.00 0.00 0.00 2.15
4578 5429 8.454106 TGCTCTTTCTTCAGCAATAACTATTTC 58.546 33.333 0.00 0.00 42.74 2.17
4637 5496 6.713450 TGCTACTTTACAGTTTCCCCTTTTAG 59.287 38.462 0.00 0.00 34.06 1.85
4638 5497 6.603224 TGCTACTTTACAGTTTCCCCTTTTA 58.397 36.000 0.00 0.00 34.06 1.52
4644 5542 8.736244 TGATAATTTGCTACTTTACAGTTTCCC 58.264 33.333 0.00 0.00 34.06 3.97
4679 5587 9.481340 GCAATTCTTCTTTTGTTTTATCCTTCT 57.519 29.630 0.00 0.00 0.00 2.85
4680 5588 9.260002 TGCAATTCTTCTTTTGTTTTATCCTTC 57.740 29.630 0.00 0.00 0.00 3.46
4683 5597 7.440856 TGGTGCAATTCTTCTTTTGTTTTATCC 59.559 33.333 0.00 0.00 0.00 2.59
4699 5613 1.322538 ATTCCCGGCTGGTGCAATTC 61.323 55.000 11.58 0.00 41.91 2.17
4797 5712 8.958119 TGTCGAAAGAACAAATATTATAGGCT 57.042 30.769 0.00 0.00 45.01 4.58
4813 5728 3.071023 ACCAACCAGATCTTGTCGAAAGA 59.929 43.478 0.00 10.92 38.16 2.52
4815 5730 3.399330 GACCAACCAGATCTTGTCGAAA 58.601 45.455 0.00 0.00 0.00 3.46
4819 5734 2.338500 GTCGACCAACCAGATCTTGTC 58.662 52.381 3.51 0.00 0.00 3.18
4821 5736 1.067846 TCGTCGACCAACCAGATCTTG 60.068 52.381 10.58 0.00 0.00 3.02
4823 5738 0.811915 CTCGTCGACCAACCAGATCT 59.188 55.000 10.58 0.00 0.00 2.75
4838 5842 3.741476 GCCACCGGTCGTACTCGT 61.741 66.667 2.59 0.00 38.33 4.18
4925 9132 3.975168 TCCAAGCACCTTCTTACTACC 57.025 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.