Multiple sequence alignment - TraesCS3A01G048700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G048700 chr3A 100.000 5494 0 0 1 5494 25937226 25931733 0.000000e+00 10146.0
1 TraesCS3A01G048700 chr3A 89.098 1697 162 11 3759 5453 19306927 19308602 0.000000e+00 2087.0
2 TraesCS3A01G048700 chr3A 91.632 968 78 2 3759 4726 19472354 19471390 0.000000e+00 1336.0
3 TraesCS3A01G048700 chr3A 89.256 968 101 1 3759 4726 19373796 19374760 0.000000e+00 1208.0
4 TraesCS3A01G048700 chr3A 90.920 826 51 13 964 1770 19304294 19305114 0.000000e+00 1088.0
5 TraesCS3A01G048700 chr3A 83.808 1019 120 29 882 1884 19371208 19372197 0.000000e+00 926.0
6 TraesCS3A01G048700 chr3A 92.157 561 38 5 3169 3724 19306280 19306839 0.000000e+00 787.0
7 TraesCS3A01G048700 chr3A 84.342 562 65 17 3171 3724 19472967 19472421 3.770000e-146 529.0
8 TraesCS3A01G048700 chr3A 97.000 300 9 0 575 874 724259465 724259166 6.350000e-139 505.0
9 TraesCS3A01G048700 chr3A 96.358 302 10 1 573 874 736155818 736156118 3.820000e-136 496.0
10 TraesCS3A01G048700 chr3A 85.386 479 56 9 3230 3705 19373246 19373713 8.270000e-133 484.0
11 TraesCS3A01G048700 chr3A 94.464 289 15 1 2825 3113 19305982 19306269 1.400000e-120 444.0
12 TraesCS3A01G048700 chr3A 78.488 516 56 22 1915 2401 19372150 19372639 2.500000e-73 287.0
13 TraesCS3A01G048700 chr3A 88.382 241 13 8 1948 2177 19305136 19305372 5.420000e-70 276.0
14 TraesCS3A01G048700 chr3A 90.751 173 14 2 402 573 11684695 11684866 4.280000e-56 230.0
15 TraesCS3A01G048700 chr3A 90.230 174 12 1 2166 2334 19305578 19305751 7.160000e-54 222.0
16 TraesCS3A01G048700 chr3A 82.812 256 29 7 1 248 19475296 19475048 1.200000e-51 215.0
17 TraesCS3A01G048700 chr3A 93.706 143 8 1 408 549 736155590 736155732 4.310000e-51 213.0
18 TraesCS3A01G048700 chr3A 82.186 247 13 10 1946 2165 19473963 19473721 3.380000e-42 183.0
19 TraesCS3A01G048700 chr3A 81.356 236 26 10 189 407 19304003 19304237 5.660000e-40 176.0
20 TraesCS3A01G048700 chr3A 93.617 47 2 1 2408 2454 714534196 714534241 9.880000e-08 69.4
21 TraesCS3A01G048700 chr3D 89.988 1708 136 17 3268 4959 17643694 17642006 0.000000e+00 2174.0
22 TraesCS3A01G048700 chr3D 84.579 1900 215 47 2855 4726 17375915 17377764 0.000000e+00 1814.0
23 TraesCS3A01G048700 chr3D 89.069 1482 131 15 3340 4798 11354285 11355758 0.000000e+00 1810.0
24 TraesCS3A01G048700 chr3D 91.781 1022 52 12 875 1872 17645486 17644473 0.000000e+00 1393.0
25 TraesCS3A01G048700 chr3D 90.690 956 86 2 3771 4726 17514554 17513602 0.000000e+00 1269.0
26 TraesCS3A01G048700 chr3D 88.976 889 41 24 921 1799 11352246 11353087 0.000000e+00 1046.0
27 TraesCS3A01G048700 chr3D 82.626 1013 136 25 880 1885 17516891 17515912 0.000000e+00 859.0
28 TraesCS3A01G048700 chr3D 87.561 410 34 8 1 407 17645874 17645479 5.020000e-125 459.0
29 TraesCS3A01G048700 chr3D 81.932 559 82 13 3169 3724 17515175 17514633 6.490000e-124 455.0
30 TraesCS3A01G048700 chr3D 80.791 531 64 19 1895 2405 11353139 11353651 1.120000e-101 381.0
31 TraesCS3A01G048700 chr3D 83.102 432 52 14 1960 2387 17644472 17644058 1.870000e-99 374.0
32 TraesCS3A01G048700 chr3D 78.672 497 75 15 1915 2405 17515959 17515488 8.940000e-78 302.0
33 TraesCS3A01G048700 chr3D 80.145 413 53 18 1 407 11351834 11352223 1.170000e-71 281.0
34 TraesCS3A01G048700 chr3D 84.698 281 25 6 1 270 17373861 17374134 1.170000e-66 265.0
35 TraesCS3A01G048700 chr3D 82.927 246 26 5 1925 2165 17375202 17375436 2.010000e-49 207.0
36 TraesCS3A01G048700 chr3D 78.393 361 29 18 1 342 18895208 18895538 7.270000e-44 189.0
37 TraesCS3A01G048700 chr3D 91.429 105 8 1 2511 2614 322016701 322016805 5.740000e-30 143.0
38 TraesCS3A01G048700 chr3D 73.735 415 62 26 2754 3147 11353796 11354184 9.670000e-23 119.0
39 TraesCS3A01G048700 chr3D 76.786 224 43 7 2935 3152 17644001 17643781 3.480000e-22 117.0
40 TraesCS3A01G048700 chrUn 92.195 1499 100 6 3396 4883 354553161 354551669 0.000000e+00 2104.0
41 TraesCS3A01G048700 chrUn 90.030 1324 80 17 875 2179 37955693 37956983 0.000000e+00 1666.0
42 TraesCS3A01G048700 chrUn 90.593 1063 59 13 1135 2179 392408923 392407884 0.000000e+00 1371.0
43 TraesCS3A01G048700 chrUn 86.636 1100 108 22 4421 5494 426956518 426955432 0.000000e+00 1181.0
44 TraesCS3A01G048700 chrUn 86.948 1019 97 20 4332 5324 268143053 268142045 0.000000e+00 1112.0
45 TraesCS3A01G048700 chrUn 95.465 419 19 0 2734 3152 354553700 354553282 0.000000e+00 669.0
46 TraesCS3A01G048700 chrUn 89.688 320 24 4 1 319 37954984 37955295 3.080000e-107 399.0
47 TraesCS3A01G048700 chrUn 89.474 323 25 4 1 322 340706948 340706634 3.080000e-107 399.0
48 TraesCS3A01G048700 chrUn 89.967 299 28 2 573 871 197230570 197230866 8.630000e-103 385.0
49 TraesCS3A01G048700 chrUn 95.111 225 11 0 2181 2405 37957035 37957259 6.770000e-94 355.0
50 TraesCS3A01G048700 chrUn 95.111 225 11 0 2181 2405 392407832 392407608 6.770000e-94 355.0
51 TraesCS3A01G048700 chrUn 96.842 95 3 0 2506 2600 48472301 48472395 5.700000e-35 159.0
52 TraesCS3A01G048700 chrUn 96.842 95 3 0 2506 2600 235114402 235114496 5.700000e-35 159.0
53 TraesCS3A01G048700 chrUn 96.842 95 3 0 2506 2600 433967202 433967108 5.700000e-35 159.0
54 TraesCS3A01G048700 chrUn 92.661 109 4 2 2599 2705 37957304 37957410 2.650000e-33 154.0
55 TraesCS3A01G048700 chrUn 92.661 109 4 2 2599 2705 392407563 392407457 2.650000e-33 154.0
56 TraesCS3A01G048700 chrUn 94.737 95 5 0 2506 2600 346823136 346823042 1.230000e-31 148.0
57 TraesCS3A01G048700 chrUn 96.923 65 2 0 2450 2514 37957241 37957305 5.820000e-20 110.0
58 TraesCS3A01G048700 chrUn 98.387 62 1 0 2453 2514 392407623 392407562 5.820000e-20 110.0
59 TraesCS3A01G048700 chrUn 89.744 78 7 1 330 407 37955624 37955700 1.260000e-16 99.0
60 TraesCS3A01G048700 chr3B 86.718 1566 150 25 3171 4726 24943158 24944675 0.000000e+00 1687.0
61 TraesCS3A01G048700 chr3B 85.593 1527 176 25 3230 4726 27518432 27519944 0.000000e+00 1561.0
62 TraesCS3A01G048700 chr3B 83.805 1025 120 32 880 1885 27516604 27517601 0.000000e+00 931.0
63 TraesCS3A01G048700 chr3B 81.857 711 107 18 1025 1727 30231878 30232574 3.690000e-161 579.0
64 TraesCS3A01G048700 chr3B 88.852 305 29 4 571 874 743135232 743134932 2.420000e-98 370.0
65 TraesCS3A01G048700 chr3B 77.830 424 53 23 1 397 24941075 24941484 1.990000e-54 224.0
66 TraesCS3A01G048700 chr3B 83.929 224 18 6 1946 2165 24942360 24942569 1.210000e-46 198.0
67 TraesCS3A01G048700 chr3B 89.423 104 11 0 3 106 29729141 29729244 1.240000e-26 132.0
68 TraesCS3A01G048700 chr3B 95.556 45 2 0 209 253 27516440 27516484 7.630000e-09 73.1
69 TraesCS3A01G048700 chr4D 89.339 469 38 8 944 1408 479409539 479409079 3.690000e-161 579.0
70 TraesCS3A01G048700 chr4D 79.562 548 98 11 4954 5494 502028161 502028701 4.020000e-101 379.0
71 TraesCS3A01G048700 chr1A 96.393 305 11 0 573 877 364034668 364034364 2.280000e-138 503.0
72 TraesCS3A01G048700 chr1A 95.783 166 6 1 407 571 364034910 364034745 3.260000e-67 267.0
73 TraesCS3A01G048700 chr1A 88.554 166 19 0 408 573 418067059 418066894 9.330000e-48 202.0
74 TraesCS3A01G048700 chr1A 84.756 164 21 4 406 567 513853052 513852891 1.580000e-35 161.0
75 TraesCS3A01G048700 chr1A 94.681 94 5 0 2510 2603 118503691 118503598 4.430000e-31 147.0
76 TraesCS3A01G048700 chr7A 95.033 302 14 1 571 872 29814958 29814658 1.790000e-129 473.0
77 TraesCS3A01G048700 chr2A 92.177 294 13 2 582 874 59989593 59989877 1.840000e-109 407.0
78 TraesCS3A01G048700 chr6A 97.071 239 7 0 573 811 31107729 31107967 2.380000e-108 403.0
79 TraesCS3A01G048700 chr6A 91.781 146 10 2 409 552 608518820 608518965 9.330000e-48 202.0
80 TraesCS3A01G048700 chr6A 90.323 155 6 1 417 571 31107507 31107652 1.560000e-45 195.0
81 TraesCS3A01G048700 chr6A 86.624 157 19 2 412 567 11653579 11653734 7.320000e-39 172.0
82 TraesCS3A01G048700 chr6D 80.110 543 91 11 4960 5494 10432555 10433088 6.670000e-104 388.0
83 TraesCS3A01G048700 chr6D 78.065 465 91 8 5030 5486 462468586 462468125 3.240000e-72 283.0
84 TraesCS3A01G048700 chr6B 91.304 276 23 1 595 870 713200672 713200946 5.200000e-100 375.0
85 TraesCS3A01G048700 chr2B 80.000 515 90 9 4977 5485 13972849 13973356 8.690000e-98 368.0
86 TraesCS3A01G048700 chr2B 95.556 45 2 0 2409 2453 315555543 315555587 7.630000e-09 73.1
87 TraesCS3A01G048700 chr1D 78.336 577 93 24 4925 5486 460420629 460420070 1.470000e-90 344.0
88 TraesCS3A01G048700 chr2D 77.180 539 96 20 4956 5486 480166018 480166537 6.960000e-74 289.0
89 TraesCS3A01G048700 chr2D 94.737 95 3 2 2506 2599 13895063 13895156 4.430000e-31 147.0
90 TraesCS3A01G048700 chr5A 78.112 466 89 8 5037 5494 692177345 692177805 3.240000e-72 283.0
91 TraesCS3A01G048700 chr5A 86.275 153 20 1 412 563 700593344 700593496 1.220000e-36 165.0
92 TraesCS3A01G048700 chr5A 91.304 46 3 1 2409 2454 467062970 467062926 1.650000e-05 62.1
93 TraesCS3A01G048700 chr5B 94.681 94 5 0 2510 2603 366854599 366854692 4.430000e-31 147.0
94 TraesCS3A01G048700 chr5D 90.654 107 6 4 2512 2617 107238662 107238559 7.420000e-29 139.0
95 TraesCS3A01G048700 chr4B 94.286 35 1 1 2420 2453 125482333 125482367 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G048700 chr3A 25931733 25937226 5493 True 10146.000000 10146 100.000000 1 5494 1 chr3A.!!$R1 5493
1 TraesCS3A01G048700 chr3A 19371208 19374760 3552 False 726.250000 1208 84.234500 882 4726 4 chr3A.!!$F4 3844
2 TraesCS3A01G048700 chr3A 19304003 19308602 4599 False 725.714286 2087 89.515286 189 5453 7 chr3A.!!$F3 5264
3 TraesCS3A01G048700 chr3A 19471390 19475296 3906 True 565.750000 1336 85.243000 1 4726 4 chr3A.!!$R3 4725
4 TraesCS3A01G048700 chr3A 736155590 736156118 528 False 354.500000 496 95.032000 408 874 2 chr3A.!!$F5 466
5 TraesCS3A01G048700 chr3D 17642006 17645874 3868 True 903.400000 2174 85.843600 1 4959 5 chr3D.!!$R2 4958
6 TraesCS3A01G048700 chr3D 17373861 17377764 3903 False 762.000000 1814 84.068000 1 4726 3 chr3D.!!$F4 4725
7 TraesCS3A01G048700 chr3D 11351834 11355758 3924 False 727.400000 1810 82.543200 1 4798 5 chr3D.!!$F3 4797
8 TraesCS3A01G048700 chr3D 17513602 17516891 3289 True 721.250000 1269 83.480000 880 4726 4 chr3D.!!$R1 3846
9 TraesCS3A01G048700 chrUn 354551669 354553700 2031 True 1386.500000 2104 93.830000 2734 4883 2 chrUn.!!$R6 2149
10 TraesCS3A01G048700 chrUn 426955432 426956518 1086 True 1181.000000 1181 86.636000 4421 5494 1 chrUn.!!$R4 1073
11 TraesCS3A01G048700 chrUn 268142045 268143053 1008 True 1112.000000 1112 86.948000 4332 5324 1 chrUn.!!$R1 992
12 TraesCS3A01G048700 chrUn 392407457 392408923 1466 True 497.500000 1371 94.188000 1135 2705 4 chrUn.!!$R7 1570
13 TraesCS3A01G048700 chrUn 37954984 37957410 2426 False 463.833333 1666 92.359500 1 2705 6 chrUn.!!$F4 2704
14 TraesCS3A01G048700 chr3B 27516440 27519944 3504 False 855.033333 1561 88.318000 209 4726 3 chr3B.!!$F4 4517
15 TraesCS3A01G048700 chr3B 24941075 24944675 3600 False 703.000000 1687 82.825667 1 4726 3 chr3B.!!$F3 4725
16 TraesCS3A01G048700 chr3B 30231878 30232574 696 False 579.000000 579 81.857000 1025 1727 1 chr3B.!!$F2 702
17 TraesCS3A01G048700 chr4D 502028161 502028701 540 False 379.000000 379 79.562000 4954 5494 1 chr4D.!!$F1 540
18 TraesCS3A01G048700 chr1A 364034364 364034910 546 True 385.000000 503 96.088000 407 877 2 chr1A.!!$R4 470
19 TraesCS3A01G048700 chr6D 10432555 10433088 533 False 388.000000 388 80.110000 4960 5494 1 chr6D.!!$F1 534
20 TraesCS3A01G048700 chr2B 13972849 13973356 507 False 368.000000 368 80.000000 4977 5485 1 chr2B.!!$F1 508
21 TraesCS3A01G048700 chr1D 460420070 460420629 559 True 344.000000 344 78.336000 4925 5486 1 chr1D.!!$R1 561
22 TraesCS3A01G048700 chr2D 480166018 480166537 519 False 289.000000 289 77.180000 4956 5486 1 chr2D.!!$F2 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 201 0.106335 ATCGATCTGGCCTCAGCTTG 59.894 55.000 3.32 0.00 40.69 4.01 F
829 1278 0.169451 CCGTGGTAACCGCAAATTCC 59.831 55.000 0.00 0.00 32.88 3.01 F
830 1279 0.179210 CGTGGTAACCGCAAATTCCG 60.179 55.000 0.00 0.00 32.88 4.30 F
864 1313 0.392595 AAAAGGTTCGCTCGGGATCC 60.393 55.000 1.92 1.92 0.00 3.36 F
869 1318 0.446616 GTTCGCTCGGGATCCAAAAC 59.553 55.000 15.23 4.45 0.00 2.43 F
870 1319 0.675522 TTCGCTCGGGATCCAAAACC 60.676 55.000 15.23 0.00 0.00 3.27 F
872 1321 0.676782 CGCTCGGGATCCAAAACCTT 60.677 55.000 15.23 0.00 0.00 3.50 F
873 1322 0.811281 GCTCGGGATCCAAAACCTTG 59.189 55.000 15.23 0.00 0.00 3.61 F
1596 2114 0.840288 TGAGGCAAGGGTTCCTGCTA 60.840 55.000 3.72 0.00 32.13 3.49 F
1896 2458 1.270550 AGCAATTTGGACGAGCAAAGG 59.729 47.619 0.00 0.00 0.00 3.11 F
3950 5098 0.039180 TGAGCCGTGACCTTCTCCTA 59.961 55.000 0.00 0.00 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1982 0.106708 TTCGAGGTGGCTGCCATATC 59.893 55.000 26.22 22.57 35.28 1.63 R
2727 3718 0.184933 AAACAGCTTGGTGCCTGGTA 59.815 50.000 0.00 0.00 44.23 3.25 R
2730 3721 0.746063 TTGAAACAGCTTGGTGCCTG 59.254 50.000 0.00 0.00 44.23 4.85 R
2960 3969 4.992951 GCAACAGCTGGATTTCAGATTTTT 59.007 37.500 19.93 0.00 46.18 1.94 R
3128 4151 9.178758 GGGAGAGTCTGTAAATATTTTGAACAT 57.821 33.333 5.91 0.00 0.00 2.71 R
3138 4161 2.742348 TGCGGGGAGAGTCTGTAAATA 58.258 47.619 0.00 0.00 0.00 1.40 R
3141 4164 1.344065 TTTGCGGGGAGAGTCTGTAA 58.656 50.000 0.00 0.00 0.00 2.41 R
3142 4165 1.344065 TTTTGCGGGGAGAGTCTGTA 58.656 50.000 0.00 0.00 0.00 2.74 R
3143 4166 0.472471 TTTTTGCGGGGAGAGTCTGT 59.528 50.000 0.00 0.00 0.00 3.41 R
4070 5218 0.178068 CAACCGCATGTAGGTAGGCT 59.822 55.000 13.97 0.00 41.95 4.58 R
5159 6330 0.106318 AGATGATTGCAAGAGCCCCC 60.106 55.000 4.94 0.00 41.13 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 200 0.835941 AATCGATCTGGCCTCAGCTT 59.164 50.000 3.32 0.00 40.69 3.74
187 201 0.106335 ATCGATCTGGCCTCAGCTTG 59.894 55.000 3.32 0.00 40.69 4.01
207 223 2.300152 TGAGCTTCCTTATCTATGGGCG 59.700 50.000 0.00 0.00 0.00 6.13
271 287 4.511246 CGTCCCCAGCCATGGCAT 62.511 66.667 37.18 20.09 46.19 4.40
355 728 3.876914 TGCTAATGGAAAACAGATAGCGG 59.123 43.478 0.00 0.00 44.84 5.52
399 772 1.386533 CATGGCCACTGTCCTTCATC 58.613 55.000 8.16 0.00 0.00 2.92
400 773 1.064906 CATGGCCACTGTCCTTCATCT 60.065 52.381 8.16 0.00 0.00 2.90
401 774 1.067295 TGGCCACTGTCCTTCATCTT 58.933 50.000 0.00 0.00 0.00 2.40
402 775 1.003580 TGGCCACTGTCCTTCATCTTC 59.996 52.381 0.00 0.00 0.00 2.87
403 776 1.003580 GGCCACTGTCCTTCATCTTCA 59.996 52.381 0.00 0.00 0.00 3.02
404 777 2.553028 GGCCACTGTCCTTCATCTTCAA 60.553 50.000 0.00 0.00 0.00 2.69
405 778 3.149196 GCCACTGTCCTTCATCTTCAAA 58.851 45.455 0.00 0.00 0.00 2.69
571 945 2.173356 CAGGCCATCTCTTATCCAACCA 59.827 50.000 5.01 0.00 0.00 3.67
645 1094 2.029964 GCGACCAGGGTTCGAACA 59.970 61.111 28.24 0.00 0.00 3.18
705 1154 2.673368 CACTAGGCCAGAAAAGCGTTAG 59.327 50.000 5.01 0.00 0.00 2.34
712 1161 4.260784 GGCCAGAAAAGCGTTAGTGATATG 60.261 45.833 0.00 0.00 0.00 1.78
799 1248 2.226912 TCGTGCGAAATTTTTCCGGAAT 59.773 40.909 19.62 1.41 33.68 3.01
800 1249 2.983803 CGTGCGAAATTTTTCCGGAATT 59.016 40.909 19.62 9.32 33.68 2.17
801 1250 3.427193 CGTGCGAAATTTTTCCGGAATTT 59.573 39.130 19.62 15.72 38.89 1.82
802 1251 4.432373 CGTGCGAAATTTTTCCGGAATTTC 60.432 41.667 23.19 23.19 44.32 2.17
806 1255 5.509605 GAAATTTTTCCGGAATTTCGTGG 57.490 39.130 19.62 1.00 41.12 4.94
807 1256 4.594123 AATTTTTCCGGAATTTCGTGGT 57.406 36.364 19.62 0.00 0.00 4.16
808 1257 4.594123 ATTTTTCCGGAATTTCGTGGTT 57.406 36.364 19.62 0.00 0.00 3.67
809 1258 5.708877 ATTTTTCCGGAATTTCGTGGTTA 57.291 34.783 19.62 0.00 0.00 2.85
810 1259 4.486574 TTTTCCGGAATTTCGTGGTTAC 57.513 40.909 19.62 0.00 0.00 2.50
811 1260 2.097680 TCCGGAATTTCGTGGTTACC 57.902 50.000 0.00 0.00 0.00 2.85
812 1261 0.722848 CCGGAATTTCGTGGTTACCG 59.277 55.000 5.22 0.00 38.83 4.02
813 1262 1.431496 CGGAATTTCGTGGTTACCGT 58.569 50.000 0.00 0.00 35.21 4.83
814 1263 1.127213 CGGAATTTCGTGGTTACCGTG 59.873 52.381 0.00 0.00 35.21 4.94
815 1264 1.465777 GGAATTTCGTGGTTACCGTGG 59.534 52.381 0.00 0.00 0.00 4.94
816 1265 2.145536 GAATTTCGTGGTTACCGTGGT 58.854 47.619 0.00 0.00 0.00 4.16
817 1266 3.324993 GAATTTCGTGGTTACCGTGGTA 58.675 45.455 0.00 0.00 0.00 3.25
818 1267 2.898729 TTTCGTGGTTACCGTGGTAA 57.101 45.000 7.40 7.40 38.14 2.85
825 1274 3.694364 TTACCGTGGTAACCGCAAA 57.306 47.368 7.40 0.00 35.88 3.68
826 1275 2.181954 TTACCGTGGTAACCGCAAAT 57.818 45.000 7.40 0.00 35.88 2.32
827 1276 2.181954 TACCGTGGTAACCGCAAATT 57.818 45.000 0.00 0.00 32.88 1.82
828 1277 0.876399 ACCGTGGTAACCGCAAATTC 59.124 50.000 0.00 0.00 32.88 2.17
829 1278 0.169451 CCGTGGTAACCGCAAATTCC 59.831 55.000 0.00 0.00 32.88 3.01
830 1279 0.179210 CGTGGTAACCGCAAATTCCG 60.179 55.000 0.00 0.00 32.88 4.30
831 1280 1.158434 GTGGTAACCGCAAATTCCGA 58.842 50.000 0.00 0.00 33.65 4.55
832 1281 1.741145 GTGGTAACCGCAAATTCCGAT 59.259 47.619 0.00 0.00 33.65 4.18
833 1282 1.740585 TGGTAACCGCAAATTCCGATG 59.259 47.619 0.56 0.00 0.00 3.84
834 1283 1.533129 GGTAACCGCAAATTCCGATGC 60.533 52.381 0.56 0.00 39.17 3.91
835 1284 0.736053 TAACCGCAAATTCCGATGCC 59.264 50.000 0.56 0.00 39.39 4.40
836 1285 1.944234 AACCGCAAATTCCGATGCCC 61.944 55.000 0.56 0.00 39.39 5.36
837 1286 2.412937 CGCAAATTCCGATGCCCC 59.587 61.111 0.00 0.00 39.39 5.80
838 1287 2.413963 CGCAAATTCCGATGCCCCA 61.414 57.895 0.00 0.00 39.39 4.96
839 1288 1.141665 GCAAATTCCGATGCCCCAC 59.858 57.895 0.00 0.00 36.56 4.61
840 1289 1.433064 CAAATTCCGATGCCCCACG 59.567 57.895 0.00 0.00 0.00 4.94
841 1290 1.029408 CAAATTCCGATGCCCCACGA 61.029 55.000 0.00 0.00 0.00 4.35
842 1291 0.748005 AAATTCCGATGCCCCACGAG 60.748 55.000 0.00 0.00 0.00 4.18
843 1292 1.622607 AATTCCGATGCCCCACGAGA 61.623 55.000 0.00 0.00 0.00 4.04
844 1293 1.622607 ATTCCGATGCCCCACGAGAA 61.623 55.000 0.00 0.00 0.00 2.87
845 1294 1.832719 TTCCGATGCCCCACGAGAAA 61.833 55.000 0.00 0.00 0.00 2.52
846 1295 1.376683 CCGATGCCCCACGAGAAAA 60.377 57.895 0.00 0.00 0.00 2.29
847 1296 0.958382 CCGATGCCCCACGAGAAAAA 60.958 55.000 0.00 0.00 0.00 1.94
862 1311 3.644861 AAAAAGGTTCGCTCGGGAT 57.355 47.368 0.00 0.00 0.00 3.85
863 1312 1.450025 AAAAAGGTTCGCTCGGGATC 58.550 50.000 0.00 0.00 0.00 3.36
864 1313 0.392595 AAAAGGTTCGCTCGGGATCC 60.393 55.000 1.92 1.92 0.00 3.36
865 1314 1.550130 AAAGGTTCGCTCGGGATCCA 61.550 55.000 15.23 0.00 0.00 3.41
866 1315 1.550130 AAGGTTCGCTCGGGATCCAA 61.550 55.000 15.23 0.00 0.00 3.53
867 1316 1.078708 GGTTCGCTCGGGATCCAAA 60.079 57.895 15.23 0.00 0.00 3.28
868 1317 0.675522 GGTTCGCTCGGGATCCAAAA 60.676 55.000 15.23 0.00 0.00 2.44
869 1318 0.446616 GTTCGCTCGGGATCCAAAAC 59.553 55.000 15.23 4.45 0.00 2.43
870 1319 0.675522 TTCGCTCGGGATCCAAAACC 60.676 55.000 15.23 0.00 0.00 3.27
871 1320 1.078426 CGCTCGGGATCCAAAACCT 60.078 57.895 15.23 0.00 0.00 3.50
872 1321 0.676782 CGCTCGGGATCCAAAACCTT 60.677 55.000 15.23 0.00 0.00 3.50
873 1322 0.811281 GCTCGGGATCCAAAACCTTG 59.189 55.000 15.23 0.00 0.00 3.61
914 1376 1.019278 CATCCGTTCAGTCCCGTTGG 61.019 60.000 0.00 0.00 0.00 3.77
915 1377 2.798148 ATCCGTTCAGTCCCGTTGGC 62.798 60.000 0.00 0.00 0.00 4.52
916 1378 3.047877 CGTTCAGTCCCGTTGGCC 61.048 66.667 0.00 0.00 0.00 5.36
917 1379 3.047877 GTTCAGTCCCGTTGGCCG 61.048 66.667 0.00 0.00 0.00 6.13
918 1380 3.552384 TTCAGTCCCGTTGGCCGT 61.552 61.111 0.00 0.00 33.66 5.68
919 1381 3.109592 TTCAGTCCCGTTGGCCGTT 62.110 57.895 0.00 0.00 33.66 4.44
920 1382 3.353836 CAGTCCCGTTGGCCGTTG 61.354 66.667 0.00 0.00 33.66 4.10
1063 1549 2.436646 CATTTCTCCGGCTGCCGT 60.437 61.111 35.82 16.68 46.80 5.68
1542 2060 3.047877 GTCGTGCCGGTTCTTGGG 61.048 66.667 1.90 0.00 0.00 4.12
1596 2114 0.840288 TGAGGCAAGGGTTCCTGCTA 60.840 55.000 3.72 0.00 32.13 3.49
1632 2164 3.681835 GACGACTGCCCCGAGTGT 61.682 66.667 0.00 0.00 0.00 3.55
1800 2355 5.491982 AGTTCTTTGATCAAGCTAATCCGT 58.508 37.500 8.41 0.00 31.70 4.69
1824 2379 3.633986 GCTGGTATTCATTCCCCTCAAAG 59.366 47.826 0.00 0.00 0.00 2.77
1829 2386 5.952347 GGTATTCATTCCCCTCAAAGTTTCT 59.048 40.000 0.00 0.00 0.00 2.52
1896 2458 1.270550 AGCAATTTGGACGAGCAAAGG 59.729 47.619 0.00 0.00 0.00 3.11
1921 2484 4.623932 TGCTGGTATTCAGAAGTGACTT 57.376 40.909 0.00 0.00 46.18 3.01
2000 2568 3.942130 TGAATCGCTCTCAAGAACAGA 57.058 42.857 0.00 0.00 0.00 3.41
2001 2569 4.462508 TGAATCGCTCTCAAGAACAGAT 57.537 40.909 0.00 0.00 0.00 2.90
2002 2570 4.825422 TGAATCGCTCTCAAGAACAGATT 58.175 39.130 4.83 4.83 0.00 2.40
2003 2571 5.965922 TGAATCGCTCTCAAGAACAGATTA 58.034 37.500 5.04 0.00 0.00 1.75
2388 3354 4.749245 AAGTTGAATTGAACGCTGTAGG 57.251 40.909 1.98 0.00 0.00 3.18
2396 3362 2.937591 TGAACGCTGTAGGTAGTTTCG 58.062 47.619 0.00 0.00 0.00 3.46
2401 3367 1.405121 GCTGTAGGTAGTTTCGGTGGG 60.405 57.143 0.00 0.00 0.00 4.61
2402 3368 1.897802 CTGTAGGTAGTTTCGGTGGGT 59.102 52.381 0.00 0.00 0.00 4.51
2403 3369 3.091545 CTGTAGGTAGTTTCGGTGGGTA 58.908 50.000 0.00 0.00 0.00 3.69
2404 3370 2.825532 TGTAGGTAGTTTCGGTGGGTAC 59.174 50.000 0.00 0.00 0.00 3.34
2432 3398 4.599047 TTTTGGAATTGTTCGGATTGCT 57.401 36.364 0.00 0.00 0.00 3.91
2433 3399 4.599047 TTTGGAATTGTTCGGATTGCTT 57.401 36.364 0.00 0.00 0.00 3.91
2434 3400 5.713792 TTTGGAATTGTTCGGATTGCTTA 57.286 34.783 0.00 0.00 0.00 3.09
2435 3401 4.695217 TGGAATTGTTCGGATTGCTTAC 57.305 40.909 0.00 0.00 0.00 2.34
2436 3402 4.075682 TGGAATTGTTCGGATTGCTTACA 58.924 39.130 0.00 0.00 0.00 2.41
2437 3403 4.520874 TGGAATTGTTCGGATTGCTTACAA 59.479 37.500 0.00 0.00 40.87 2.41
2438 3404 4.857037 GGAATTGTTCGGATTGCTTACAAC 59.143 41.667 0.00 0.00 38.99 3.32
2439 3405 5.446143 AATTGTTCGGATTGCTTACAACA 57.554 34.783 0.00 0.00 38.99 3.33
2440 3406 5.643379 ATTGTTCGGATTGCTTACAACAT 57.357 34.783 0.00 0.00 38.99 2.71
2441 3407 4.418013 TGTTCGGATTGCTTACAACATG 57.582 40.909 0.00 0.00 38.99 3.21
2442 3408 3.818210 TGTTCGGATTGCTTACAACATGT 59.182 39.130 0.00 0.00 38.99 3.21
2443 3409 4.158384 GTTCGGATTGCTTACAACATGTG 58.842 43.478 0.00 0.00 38.99 3.21
2444 3410 3.407698 TCGGATTGCTTACAACATGTGT 58.592 40.909 0.00 2.49 44.82 3.72
2445 3411 3.435327 TCGGATTGCTTACAACATGTGTC 59.565 43.478 0.00 0.00 41.98 3.67
2446 3412 3.188254 CGGATTGCTTACAACATGTGTCA 59.812 43.478 0.00 0.00 41.98 3.58
2447 3413 4.475944 GGATTGCTTACAACATGTGTCAC 58.524 43.478 0.00 0.00 41.98 3.67
2448 3414 3.600717 TTGCTTACAACATGTGTCACG 57.399 42.857 0.00 0.00 41.98 4.35
2449 3415 2.556257 TGCTTACAACATGTGTCACGT 58.444 42.857 0.00 0.00 41.98 4.49
2450 3416 2.286563 TGCTTACAACATGTGTCACGTG 59.713 45.455 21.25 21.25 41.98 4.49
2451 3417 2.349438 GCTTACAACATGTGTCACGTGG 60.349 50.000 25.31 13.32 41.98 4.94
2452 3418 2.605837 TACAACATGTGTCACGTGGT 57.394 45.000 25.31 18.72 41.98 4.16
2453 3419 2.605837 ACAACATGTGTCACGTGGTA 57.394 45.000 25.31 1.73 39.36 3.25
2454 3420 2.479837 ACAACATGTGTCACGTGGTAG 58.520 47.619 25.31 16.89 39.36 3.18
2455 3421 2.159014 ACAACATGTGTCACGTGGTAGT 60.159 45.455 25.31 17.43 39.36 2.73
2456 3422 2.869801 CAACATGTGTCACGTGGTAGTT 59.130 45.455 25.31 10.64 39.36 2.24
2457 3423 3.188159 ACATGTGTCACGTGGTAGTTT 57.812 42.857 25.31 4.32 39.36 2.66
2458 3424 3.128349 ACATGTGTCACGTGGTAGTTTC 58.872 45.455 25.31 0.77 39.36 2.78
2459 3425 2.963548 TGTGTCACGTGGTAGTTTCA 57.036 45.000 17.00 3.36 0.00 2.69
2460 3426 2.816689 TGTGTCACGTGGTAGTTTCAG 58.183 47.619 17.00 0.00 0.00 3.02
2461 3427 2.166870 TGTGTCACGTGGTAGTTTCAGT 59.833 45.455 17.00 0.00 0.00 3.41
2462 3428 2.538449 GTGTCACGTGGTAGTTTCAGTG 59.462 50.000 17.00 0.00 0.00 3.66
2463 3429 2.132762 GTCACGTGGTAGTTTCAGTGG 58.867 52.381 17.00 0.00 0.00 4.00
2513 3504 3.415212 ACTGAGTGTTGCACTGCATAAT 58.585 40.909 4.10 0.00 45.44 1.28
2515 3506 4.393062 ACTGAGTGTTGCACTGCATAATAC 59.607 41.667 4.10 0.39 45.44 1.89
2517 3508 4.631377 TGAGTGTTGCACTGCATAATACTC 59.369 41.667 18.71 18.71 45.44 2.59
2518 3509 3.941483 AGTGTTGCACTGCATAATACTCC 59.059 43.478 4.10 0.00 43.63 3.85
2519 3510 3.065371 GTGTTGCACTGCATAATACTCCC 59.935 47.826 4.10 0.00 38.76 4.30
2520 3511 3.054434 TGTTGCACTGCATAATACTCCCT 60.054 43.478 4.10 0.00 38.76 4.20
2521 3512 3.475566 TGCACTGCATAATACTCCCTC 57.524 47.619 0.00 0.00 31.71 4.30
2523 3514 2.104792 GCACTGCATAATACTCCCTCCA 59.895 50.000 0.00 0.00 0.00 3.86
2524 3515 3.244700 GCACTGCATAATACTCCCTCCAT 60.245 47.826 0.00 0.00 0.00 3.41
2526 3517 4.999950 CACTGCATAATACTCCCTCCATTC 59.000 45.833 0.00 0.00 0.00 2.67
2527 3518 4.042187 ACTGCATAATACTCCCTCCATTCC 59.958 45.833 0.00 0.00 0.00 3.01
2528 3519 3.980022 TGCATAATACTCCCTCCATTCCA 59.020 43.478 0.00 0.00 0.00 3.53
2530 3521 5.103728 TGCATAATACTCCCTCCATTCCAAA 60.104 40.000 0.00 0.00 0.00 3.28
2531 3522 5.833131 GCATAATACTCCCTCCATTCCAAAA 59.167 40.000 0.00 0.00 0.00 2.44
2532 3523 6.494835 GCATAATACTCCCTCCATTCCAAAAT 59.505 38.462 0.00 0.00 0.00 1.82
2533 3524 7.669722 GCATAATACTCCCTCCATTCCAAAATA 59.330 37.037 0.00 0.00 0.00 1.40
2534 3525 9.236006 CATAATACTCCCTCCATTCCAAAATAG 57.764 37.037 0.00 0.00 0.00 1.73
2535 3526 7.465900 AATACTCCCTCCATTCCAAAATAGA 57.534 36.000 0.00 0.00 0.00 1.98
2536 3527 7.654287 ATACTCCCTCCATTCCAAAATAGAT 57.346 36.000 0.00 0.00 0.00 1.98
2537 3528 5.699143 ACTCCCTCCATTCCAAAATAGATG 58.301 41.667 0.00 0.00 0.00 2.90
2538 3529 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
2539 3530 5.694995 TCCCTCCATTCCAAAATAGATGAC 58.305 41.667 0.00 0.00 0.00 3.06
2540 3531 4.829492 CCCTCCATTCCAAAATAGATGACC 59.171 45.833 0.00 0.00 0.00 4.02
2541 3532 4.829492 CCTCCATTCCAAAATAGATGACCC 59.171 45.833 0.00 0.00 0.00 4.46
2542 3533 5.448654 CTCCATTCCAAAATAGATGACCCA 58.551 41.667 0.00 0.00 0.00 4.51
2543 3534 5.836705 TCCATTCCAAAATAGATGACCCAA 58.163 37.500 0.00 0.00 0.00 4.12
2544 3535 5.656416 TCCATTCCAAAATAGATGACCCAAC 59.344 40.000 0.00 0.00 0.00 3.77
2545 3536 5.658190 CCATTCCAAAATAGATGACCCAACT 59.342 40.000 0.00 0.00 0.00 3.16
2546 3537 6.155049 CCATTCCAAAATAGATGACCCAACTT 59.845 38.462 0.00 0.00 0.00 2.66
2547 3538 7.310609 CCATTCCAAAATAGATGACCCAACTTT 60.311 37.037 0.00 0.00 0.00 2.66
2548 3539 8.748412 CATTCCAAAATAGATGACCCAACTTTA 58.252 33.333 0.00 0.00 0.00 1.85
2549 3540 7.938140 TCCAAAATAGATGACCCAACTTTAG 57.062 36.000 0.00 0.00 0.00 1.85
2550 3541 7.695055 TCCAAAATAGATGACCCAACTTTAGA 58.305 34.615 0.00 0.00 0.00 2.10
2551 3542 7.610305 TCCAAAATAGATGACCCAACTTTAGAC 59.390 37.037 0.00 0.00 0.00 2.59
2552 3543 7.611855 CCAAAATAGATGACCCAACTTTAGACT 59.388 37.037 0.00 0.00 0.00 3.24
2553 3544 9.667107 CAAAATAGATGACCCAACTTTAGACTA 57.333 33.333 0.00 0.00 0.00 2.59
2597 3588 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
2598 3589 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
2611 3602 3.370527 GGAGGGAGTATTAAGCAGTGCAA 60.371 47.826 19.20 3.82 0.00 4.08
2676 3667 5.363101 AGCTTACGGCCCTTAAGTTAATAC 58.637 41.667 16.57 3.42 43.05 1.89
2682 3673 7.739498 ACGGCCCTTAAGTTAATACATATTG 57.261 36.000 0.00 0.00 0.00 1.90
2722 3713 6.735556 AGAGATGACCAAAGGAACCAAATAT 58.264 36.000 0.00 0.00 0.00 1.28
2723 3714 7.872138 AGAGATGACCAAAGGAACCAAATATA 58.128 34.615 0.00 0.00 0.00 0.86
2725 3716 7.062957 AGATGACCAAAGGAACCAAATATAGG 58.937 38.462 0.00 0.00 0.00 2.57
2726 3717 5.515106 TGACCAAAGGAACCAAATATAGGG 58.485 41.667 0.00 0.00 0.00 3.53
2727 3718 5.015817 TGACCAAAGGAACCAAATATAGGGT 59.984 40.000 0.00 0.00 39.65 4.34
2728 3719 6.217900 TGACCAAAGGAACCAAATATAGGGTA 59.782 38.462 0.00 0.00 36.05 3.69
2973 3982 9.710900 ACCACCTTGAATTAAAAATCTGAAATC 57.289 29.630 0.00 0.00 0.00 2.17
3071 4089 7.609146 AGTTATCATGACAATGCCGATTCATAT 59.391 33.333 0.00 0.00 33.47 1.78
3154 4177 8.561738 TGTTCAAAATATTTACAGACTCTCCC 57.438 34.615 0.01 0.00 0.00 4.30
3155 4178 7.610305 TGTTCAAAATATTTACAGACTCTCCCC 59.390 37.037 0.01 0.00 0.00 4.81
3156 4179 6.346096 TCAAAATATTTACAGACTCTCCCCG 58.654 40.000 0.01 0.00 0.00 5.73
3157 4180 4.338379 AATATTTACAGACTCTCCCCGC 57.662 45.455 0.00 0.00 0.00 6.13
3158 4181 1.568504 ATTTACAGACTCTCCCCGCA 58.431 50.000 0.00 0.00 0.00 5.69
3159 4182 1.344065 TTTACAGACTCTCCCCGCAA 58.656 50.000 0.00 0.00 0.00 4.85
3197 4222 2.093235 ACAGACTCTTCTTATGCAGGGC 60.093 50.000 0.00 0.00 0.00 5.19
3310 4345 2.438021 TCCTGTGCTCCATATTGTACCC 59.562 50.000 0.00 0.00 0.00 3.69
3370 4432 1.965414 TAGCCAGATCCCTTGGTTGA 58.035 50.000 1.80 0.00 0.00 3.18
3450 4524 2.419159 GCTGTACTCATGGCATGTCTCA 60.419 50.000 25.62 18.11 0.00 3.27
3561 4635 5.941788 ACAGTAAAGACCTTGAGTTGGATT 58.058 37.500 0.00 0.00 0.00 3.01
3650 4724 2.038659 CTTGGTGATGGTGGTTTTGGT 58.961 47.619 0.00 0.00 0.00 3.67
3709 4793 5.181690 TGTTGCTTGTGAATCTTAACACC 57.818 39.130 0.00 0.00 36.35 4.16
3866 5014 3.149196 GGTTGAGCAGTTCCTGAATGAA 58.851 45.455 0.00 0.00 32.44 2.57
3878 5026 5.246981 TCCTGAATGAAGTTGACATCCTT 57.753 39.130 0.00 0.00 0.00 3.36
3881 5029 5.391310 CCTGAATGAAGTTGACATCCTTTCG 60.391 44.000 0.00 0.00 0.00 3.46
3929 5077 3.499537 TCTTATATGGATGTACGTCGCGT 59.500 43.478 5.77 9.64 44.35 6.01
3950 5098 0.039180 TGAGCCGTGACCTTCTCCTA 59.961 55.000 0.00 0.00 0.00 2.94
4070 5218 3.521560 CATAGAAACGGCTGAAGCACTA 58.478 45.455 0.00 0.00 44.36 2.74
4079 5227 2.032620 GCTGAAGCACTAGCCTACCTA 58.967 52.381 0.00 0.00 43.56 3.08
4088 5236 1.687123 CTAGCCTACCTACATGCGGTT 59.313 52.381 12.01 0.00 35.98 4.44
4181 5329 0.681564 TTGGGTTGTCACGCCTGTTT 60.682 50.000 0.00 0.00 34.90 2.83
4193 5341 1.172812 GCCTGTTTCCGCTTGAGGTT 61.173 55.000 0.00 0.00 0.00 3.50
4304 5452 1.080772 CAGCTTCGGTGTCGTGCTA 60.081 57.895 0.00 0.00 41.78 3.49
4410 5558 6.430925 CAGGATTCAGAACCATGAAGTTGTTA 59.569 38.462 0.00 0.00 42.20 2.41
4416 5564 5.239306 CAGAACCATGAAGTTGTTAAGCTGA 59.761 40.000 0.00 0.00 0.00 4.26
4424 5572 6.003326 TGAAGTTGTTAAGCTGATTGATCCA 58.997 36.000 0.00 0.00 0.00 3.41
4599 5747 5.615289 GGGCTAATAGCATGAAGAAGAAGA 58.385 41.667 14.76 0.00 44.75 2.87
4600 5748 6.058183 GGGCTAATAGCATGAAGAAGAAGAA 58.942 40.000 14.76 0.00 44.75 2.52
4601 5749 6.204495 GGGCTAATAGCATGAAGAAGAAGAAG 59.796 42.308 14.76 0.00 44.75 2.85
4624 5772 0.522180 TCTCAGAAAGAGGACGCGTC 59.478 55.000 30.67 30.67 44.81 5.19
4625 5773 0.523966 CTCAGAAAGAGGACGCGTCT 59.476 55.000 35.50 22.76 40.84 4.18
4661 5809 2.338620 CAGTTCTCGCCCGACACA 59.661 61.111 0.00 0.00 0.00 3.72
4677 5825 6.516860 GCCCGACACAGTTATACATAGATTCT 60.517 42.308 0.00 0.00 0.00 2.40
4729 5877 5.807520 CGTCAAATGCTAGCGGATTATCTAT 59.192 40.000 10.77 0.00 30.40 1.98
4730 5878 6.972901 CGTCAAATGCTAGCGGATTATCTATA 59.027 38.462 10.77 0.00 30.40 1.31
4733 5881 7.488150 TCAAATGCTAGCGGATTATCTATAACG 59.512 37.037 10.77 0.00 30.40 3.18
4783 5932 4.871933 CCCTTTTGGCACTCTTTAACAT 57.128 40.909 0.00 0.00 38.58 2.71
4794 5943 6.198966 GGCACTCTTTAACATTGACAAAACAG 59.801 38.462 0.00 0.00 0.00 3.16
4828 5977 0.668535 GCTCGGCAAAATGGGGTATC 59.331 55.000 0.00 0.00 0.00 2.24
4829 5978 1.750682 GCTCGGCAAAATGGGGTATCT 60.751 52.381 0.00 0.00 0.00 1.98
4839 5988 1.583556 TGGGGTATCTGATGTGCTGT 58.416 50.000 0.00 0.00 0.00 4.40
4858 6007 3.472652 TGTAATGTTTTGACTGCCGAGT 58.527 40.909 0.00 0.00 33.98 4.18
4889 6060 3.574396 GACCTCGGATGGAGATGATACAA 59.426 47.826 0.00 0.00 46.23 2.41
4930 6101 3.162666 TCTTTTCCTCGAGCAGTTAGGA 58.837 45.455 6.99 0.00 37.64 2.94
4950 6121 0.609131 TTAGCCAGGCAAACAGGAGC 60.609 55.000 15.80 0.00 0.00 4.70
5049 6220 2.025589 GGAGGAACCTCGGATTTGTC 57.974 55.000 13.70 0.00 43.59 3.18
5083 6254 4.136341 TCTCAGTAGGGTTAGGGTTGAA 57.864 45.455 0.00 0.00 0.00 2.69
5113 6284 2.046988 CAGGCTGTCACGATGGCA 60.047 61.111 6.28 0.00 0.00 4.92
5159 6330 4.261888 CGTTCACGGTTGAGGGAG 57.738 61.111 0.00 0.00 31.71 4.30
5171 6342 4.682714 AGGGAGGGGGCTCTTGCA 62.683 66.667 0.00 0.00 41.91 4.08
5172 6343 3.661648 GGGAGGGGGCTCTTGCAA 61.662 66.667 0.00 0.00 41.91 4.08
5272 6443 4.410400 GCCGGGTTGGTCCTCAGG 62.410 72.222 2.18 0.00 41.21 3.86
5358 6540 3.882888 CCTCCTTCTTTGTGTTGTTGCTA 59.117 43.478 0.00 0.00 0.00 3.49
5359 6541 4.338118 CCTCCTTCTTTGTGTTGTTGCTAA 59.662 41.667 0.00 0.00 0.00 3.09
5385 6567 3.451894 CCTGATTTGCCCGGGTGC 61.452 66.667 24.63 9.39 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.390521 TCGCCGGCATTCACCTCT 61.391 61.111 28.98 0.00 0.00 3.69
113 123 1.134907 ACGACTGAACTCACCGTTGTT 60.135 47.619 0.00 0.00 35.56 2.83
114 124 0.458669 ACGACTGAACTCACCGTTGT 59.541 50.000 0.00 0.00 35.56 3.32
152 162 5.644206 CAGATCGATTCCTAGGAACTCGATA 59.356 44.000 37.86 27.07 44.44 2.92
171 185 0.814812 GCTCAAGCTGAGGCCAGATC 60.815 60.000 5.01 0.00 44.43 2.75
186 200 2.300152 CGCCCATAGATAAGGAAGCTCA 59.700 50.000 0.00 0.00 0.00 4.26
187 201 2.563179 TCGCCCATAGATAAGGAAGCTC 59.437 50.000 0.00 0.00 0.00 4.09
207 223 3.177997 ACCCGCCATTAATTTTGCATC 57.822 42.857 0.00 0.00 0.00 3.91
271 287 2.033911 TTCCAGAGCGGCAATGCA 59.966 55.556 7.79 0.00 37.31 3.96
336 708 4.497291 ACCCGCTATCTGTTTTCCATTA 57.503 40.909 0.00 0.00 0.00 1.90
355 728 0.391597 TTGACCGGTCAGAGTCAACC 59.608 55.000 34.25 6.52 45.53 3.77
389 762 3.817084 CAGTGCTTTGAAGATGAAGGACA 59.183 43.478 9.74 0.00 43.86 4.02
399 772 3.525268 ACCCAAAACAGTGCTTTGAAG 57.475 42.857 18.41 12.22 36.12 3.02
400 773 3.131400 GGTACCCAAAACAGTGCTTTGAA 59.869 43.478 18.41 3.32 36.12 2.69
401 774 2.691011 GGTACCCAAAACAGTGCTTTGA 59.309 45.455 18.41 0.00 36.12 2.69
402 775 2.542824 CGGTACCCAAAACAGTGCTTTG 60.543 50.000 11.32 11.32 34.24 2.77
403 776 1.679153 CGGTACCCAAAACAGTGCTTT 59.321 47.619 6.25 0.00 0.00 3.51
404 777 1.134037 TCGGTACCCAAAACAGTGCTT 60.134 47.619 6.25 0.00 0.00 3.91
405 778 0.470766 TCGGTACCCAAAACAGTGCT 59.529 50.000 6.25 0.00 0.00 4.40
530 904 5.817816 GCCTGTATTTAACTATGCTGTGAGT 59.182 40.000 0.00 0.00 0.00 3.41
645 1094 0.966920 CACCTGTGTAGAAGTCCCGT 59.033 55.000 0.00 0.00 0.00 5.28
696 1145 6.096423 TCAGTCCTACATATCACTAACGCTTT 59.904 38.462 0.00 0.00 0.00 3.51
799 1248 2.898729 TTACCACGGTAACCACGAAA 57.101 45.000 4.51 0.00 35.88 3.46
807 1256 2.181954 ATTTGCGGTTACCACGGTAA 57.818 45.000 4.51 4.51 38.14 2.85
808 1257 2.075338 GAATTTGCGGTTACCACGGTA 58.925 47.619 1.13 0.00 0.00 4.02
809 1258 0.876399 GAATTTGCGGTTACCACGGT 59.124 50.000 1.13 0.00 0.00 4.83
810 1259 0.169451 GGAATTTGCGGTTACCACGG 59.831 55.000 1.13 0.00 0.00 4.94
811 1260 0.179210 CGGAATTTGCGGTTACCACG 60.179 55.000 1.13 0.00 0.00 4.94
812 1261 1.158434 TCGGAATTTGCGGTTACCAC 58.842 50.000 10.48 0.00 0.00 4.16
813 1262 1.740585 CATCGGAATTTGCGGTTACCA 59.259 47.619 10.48 0.00 0.00 3.25
814 1263 1.533129 GCATCGGAATTTGCGGTTACC 60.533 52.381 10.48 0.00 0.00 2.85
815 1264 1.533129 GGCATCGGAATTTGCGGTTAC 60.533 52.381 10.48 0.00 39.78 2.50
816 1265 0.736053 GGCATCGGAATTTGCGGTTA 59.264 50.000 10.48 0.00 39.78 2.85
817 1266 1.510844 GGCATCGGAATTTGCGGTT 59.489 52.632 10.48 0.00 39.78 4.44
818 1267 2.414785 GGGCATCGGAATTTGCGGT 61.415 57.895 10.48 0.00 39.78 5.68
819 1268 2.412937 GGGCATCGGAATTTGCGG 59.587 61.111 10.48 0.00 39.78 5.69
820 1269 2.412937 GGGGCATCGGAATTTGCG 59.587 61.111 3.69 3.69 39.78 4.85
821 1270 1.141665 GTGGGGCATCGGAATTTGC 59.858 57.895 0.00 0.00 38.14 3.68
822 1271 1.029408 TCGTGGGGCATCGGAATTTG 61.029 55.000 0.00 0.00 0.00 2.32
823 1272 0.748005 CTCGTGGGGCATCGGAATTT 60.748 55.000 0.00 0.00 0.00 1.82
824 1273 1.153168 CTCGTGGGGCATCGGAATT 60.153 57.895 0.00 0.00 0.00 2.17
825 1274 1.622607 TTCTCGTGGGGCATCGGAAT 61.623 55.000 0.00 0.00 0.00 3.01
826 1275 1.832719 TTTCTCGTGGGGCATCGGAA 61.833 55.000 0.00 0.00 0.00 4.30
827 1276 1.832719 TTTTCTCGTGGGGCATCGGA 61.833 55.000 0.00 0.00 0.00 4.55
828 1277 0.958382 TTTTTCTCGTGGGGCATCGG 60.958 55.000 0.00 0.00 0.00 4.18
829 1278 2.550487 TTTTTCTCGTGGGGCATCG 58.450 52.632 0.00 0.00 0.00 3.84
844 1293 1.450025 GATCCCGAGCGAACCTTTTT 58.550 50.000 0.00 0.00 0.00 1.94
845 1294 0.392595 GGATCCCGAGCGAACCTTTT 60.393 55.000 0.00 0.00 0.00 2.27
846 1295 1.221021 GGATCCCGAGCGAACCTTT 59.779 57.895 0.00 0.00 0.00 3.11
847 1296 1.550130 TTGGATCCCGAGCGAACCTT 61.550 55.000 9.90 0.00 0.00 3.50
848 1297 1.550130 TTTGGATCCCGAGCGAACCT 61.550 55.000 9.90 0.00 0.00 3.50
849 1298 0.675522 TTTTGGATCCCGAGCGAACC 60.676 55.000 9.90 0.00 0.00 3.62
850 1299 0.446616 GTTTTGGATCCCGAGCGAAC 59.553 55.000 9.90 1.65 0.00 3.95
851 1300 0.675522 GGTTTTGGATCCCGAGCGAA 60.676 55.000 9.90 0.00 0.00 4.70
852 1301 1.078708 GGTTTTGGATCCCGAGCGA 60.079 57.895 9.90 0.00 0.00 4.93
853 1302 0.676782 AAGGTTTTGGATCCCGAGCG 60.677 55.000 9.90 0.00 0.00 5.03
854 1303 0.811281 CAAGGTTTTGGATCCCGAGC 59.189 55.000 9.90 4.77 0.00 5.03
855 1304 0.811281 GCAAGGTTTTGGATCCCGAG 59.189 55.000 9.90 0.00 34.79 4.63
856 1305 0.404040 AGCAAGGTTTTGGATCCCGA 59.596 50.000 9.90 0.00 34.79 5.14
857 1306 1.202348 GAAGCAAGGTTTTGGATCCCG 59.798 52.381 9.90 0.00 34.79 5.14
858 1307 2.247358 TGAAGCAAGGTTTTGGATCCC 58.753 47.619 9.90 0.00 34.79 3.85
859 1308 4.202253 ACTTTGAAGCAAGGTTTTGGATCC 60.202 41.667 4.20 4.20 29.49 3.36
860 1309 4.948847 ACTTTGAAGCAAGGTTTTGGATC 58.051 39.130 0.00 0.00 29.49 3.36
861 1310 4.499696 CGACTTTGAAGCAAGGTTTTGGAT 60.500 41.667 0.00 0.00 33.92 3.41
862 1311 3.181491 CGACTTTGAAGCAAGGTTTTGGA 60.181 43.478 0.00 0.00 33.92 3.53
863 1312 3.115554 CGACTTTGAAGCAAGGTTTTGG 58.884 45.455 0.00 0.00 33.92 3.28
864 1313 2.535574 GCGACTTTGAAGCAAGGTTTTG 59.464 45.455 0.00 0.00 33.92 2.44
865 1314 2.165437 TGCGACTTTGAAGCAAGGTTTT 59.835 40.909 0.00 0.00 33.92 2.43
866 1315 1.748493 TGCGACTTTGAAGCAAGGTTT 59.252 42.857 0.00 0.00 33.92 3.27
867 1316 1.065551 GTGCGACTTTGAAGCAAGGTT 59.934 47.619 0.00 0.00 42.93 3.50
868 1317 0.663153 GTGCGACTTTGAAGCAAGGT 59.337 50.000 0.00 0.00 42.93 3.50
869 1318 0.662619 TGTGCGACTTTGAAGCAAGG 59.337 50.000 0.00 0.00 42.93 3.61
870 1319 2.578495 GATGTGCGACTTTGAAGCAAG 58.422 47.619 0.00 0.00 42.93 4.01
871 1320 1.266718 GGATGTGCGACTTTGAAGCAA 59.733 47.619 0.00 0.00 42.93 3.91
872 1321 0.874390 GGATGTGCGACTTTGAAGCA 59.126 50.000 0.00 0.00 38.71 3.91
873 1322 0.169009 GGGATGTGCGACTTTGAAGC 59.831 55.000 0.00 0.00 0.00 3.86
914 1376 1.145803 AAGTTAACGAGAGCAACGGC 58.854 50.000 0.00 0.00 41.61 5.68
915 1377 3.572584 ACTAAGTTAACGAGAGCAACGG 58.427 45.455 15.08 0.00 35.28 4.44
916 1378 3.607209 GGACTAAGTTAACGAGAGCAACG 59.393 47.826 15.08 0.00 35.28 4.10
917 1379 4.807443 AGGACTAAGTTAACGAGAGCAAC 58.193 43.478 15.08 2.99 0.00 4.17
918 1380 4.379186 CGAGGACTAAGTTAACGAGAGCAA 60.379 45.833 15.08 0.00 0.00 3.91
919 1381 3.126514 CGAGGACTAAGTTAACGAGAGCA 59.873 47.826 15.08 0.00 0.00 4.26
920 1382 3.126686 ACGAGGACTAAGTTAACGAGAGC 59.873 47.826 15.08 7.99 0.00 4.09
1472 1982 0.106708 TTCGAGGTGGCTGCCATATC 59.893 55.000 26.22 22.57 35.28 1.63
1473 1983 0.179045 GTTCGAGGTGGCTGCCATAT 60.179 55.000 26.22 16.44 35.28 1.78
1542 2060 4.705519 TCGTCGCCGTCCGGAAAC 62.706 66.667 5.23 5.45 37.50 2.78
1800 2355 2.580322 TGAGGGGAATGAATACCAGCAA 59.420 45.455 0.00 0.00 0.00 3.91
1824 2379 1.000506 TCGGTCACTGGCACTAGAAAC 59.999 52.381 0.00 0.00 0.00 2.78
1829 2386 1.204704 CTGAATCGGTCACTGGCACTA 59.795 52.381 0.00 0.00 31.13 2.74
1896 2458 6.109359 AGTCACTTCTGAATACCAGCATTAC 58.891 40.000 0.00 0.00 42.62 1.89
1921 2484 5.122239 CGCCACTTCTGAATTCACTCAAATA 59.878 40.000 3.38 0.00 0.00 1.40
2171 3034 7.276218 GCATCTTTGTTGAATAGCAATGCTTAA 59.724 33.333 14.85 0.00 40.44 1.85
2173 3036 5.579511 GCATCTTTGTTGAATAGCAATGCTT 59.420 36.000 14.85 0.00 40.44 3.91
2354 3311 1.600023 TCAACTTTGCACCCCTAACG 58.400 50.000 0.00 0.00 0.00 3.18
2410 3376 4.954875 AGCAATCCGAACAATTCCAAAAA 58.045 34.783 0.00 0.00 0.00 1.94
2411 3377 4.599047 AGCAATCCGAACAATTCCAAAA 57.401 36.364 0.00 0.00 0.00 2.44
2412 3378 4.599047 AAGCAATCCGAACAATTCCAAA 57.401 36.364 0.00 0.00 0.00 3.28
2413 3379 4.520874 TGTAAGCAATCCGAACAATTCCAA 59.479 37.500 0.00 0.00 0.00 3.53
2414 3380 4.075682 TGTAAGCAATCCGAACAATTCCA 58.924 39.130 0.00 0.00 0.00 3.53
2415 3381 4.695217 TGTAAGCAATCCGAACAATTCC 57.305 40.909 0.00 0.00 0.00 3.01
2416 3382 5.457140 TGTTGTAAGCAATCCGAACAATTC 58.543 37.500 0.00 0.00 36.92 2.17
2417 3383 5.446143 TGTTGTAAGCAATCCGAACAATT 57.554 34.783 0.00 0.00 36.92 2.32
2418 3384 5.048083 ACATGTTGTAAGCAATCCGAACAAT 60.048 36.000 0.00 0.00 36.92 2.71
2419 3385 4.277174 ACATGTTGTAAGCAATCCGAACAA 59.723 37.500 0.00 0.00 36.92 2.83
2420 3386 3.818210 ACATGTTGTAAGCAATCCGAACA 59.182 39.130 0.00 0.00 36.92 3.18
2421 3387 4.158384 CACATGTTGTAAGCAATCCGAAC 58.842 43.478 0.00 0.00 36.92 3.95
2422 3388 3.818210 ACACATGTTGTAAGCAATCCGAA 59.182 39.130 0.00 0.00 36.32 4.30
2423 3389 3.407698 ACACATGTTGTAAGCAATCCGA 58.592 40.909 0.00 0.00 36.32 4.55
2424 3390 3.188254 TGACACATGTTGTAAGCAATCCG 59.812 43.478 0.00 0.00 39.17 4.18
2425 3391 4.475944 GTGACACATGTTGTAAGCAATCC 58.524 43.478 0.00 0.00 39.17 3.01
2426 3392 4.151070 CGTGACACATGTTGTAAGCAATC 58.849 43.478 6.37 0.00 39.17 2.67
2427 3393 3.563808 ACGTGACACATGTTGTAAGCAAT 59.436 39.130 6.37 0.00 39.17 3.56
2428 3394 2.939756 ACGTGACACATGTTGTAAGCAA 59.060 40.909 6.37 0.00 39.17 3.91
2429 3395 2.286563 CACGTGACACATGTTGTAAGCA 59.713 45.455 10.90 0.00 39.17 3.91
2430 3396 2.349438 CCACGTGACACATGTTGTAAGC 60.349 50.000 19.30 0.00 39.17 3.09
2431 3397 2.869801 ACCACGTGACACATGTTGTAAG 59.130 45.455 19.30 0.00 39.17 2.34
2432 3398 2.907634 ACCACGTGACACATGTTGTAA 58.092 42.857 19.30 0.00 39.17 2.41
2433 3399 2.605837 ACCACGTGACACATGTTGTA 57.394 45.000 19.30 0.00 39.17 2.41
2434 3400 2.159014 ACTACCACGTGACACATGTTGT 60.159 45.455 19.30 9.25 43.10 3.32
2435 3401 2.479837 ACTACCACGTGACACATGTTG 58.520 47.619 19.30 8.59 30.47 3.33
2436 3402 2.902705 ACTACCACGTGACACATGTT 57.097 45.000 19.30 0.00 30.47 2.71
2437 3403 2.902705 AACTACCACGTGACACATGT 57.097 45.000 19.30 7.66 33.47 3.21
2438 3404 3.127589 TGAAACTACCACGTGACACATG 58.872 45.455 19.30 0.00 0.00 3.21
2439 3405 3.181469 ACTGAAACTACCACGTGACACAT 60.181 43.478 19.30 0.00 0.00 3.21
2440 3406 2.166870 ACTGAAACTACCACGTGACACA 59.833 45.455 19.30 6.28 0.00 3.72
2441 3407 2.538449 CACTGAAACTACCACGTGACAC 59.462 50.000 19.30 0.00 0.00 3.67
2442 3408 2.482316 CCACTGAAACTACCACGTGACA 60.482 50.000 19.30 2.69 0.00 3.58
2443 3409 2.132762 CCACTGAAACTACCACGTGAC 58.867 52.381 19.30 0.02 0.00 3.67
2444 3410 1.069513 CCCACTGAAACTACCACGTGA 59.930 52.381 19.30 0.00 0.00 4.35
2445 3411 1.202604 ACCCACTGAAACTACCACGTG 60.203 52.381 9.08 9.08 0.00 4.49
2446 3412 1.125633 ACCCACTGAAACTACCACGT 58.874 50.000 0.00 0.00 0.00 4.49
2447 3413 2.298163 AGTACCCACTGAAACTACCACG 59.702 50.000 0.00 0.00 32.25 4.94
2448 3414 4.347360 AAGTACCCACTGAAACTACCAC 57.653 45.455 0.00 0.00 34.36 4.16
2449 3415 5.396485 TCTAAGTACCCACTGAAACTACCA 58.604 41.667 0.00 0.00 34.36 3.25
2450 3416 5.105432 CCTCTAAGTACCCACTGAAACTACC 60.105 48.000 0.00 0.00 34.36 3.18
2451 3417 5.479724 ACCTCTAAGTACCCACTGAAACTAC 59.520 44.000 0.00 0.00 34.36 2.73
2452 3418 5.479375 CACCTCTAAGTACCCACTGAAACTA 59.521 44.000 0.00 0.00 34.36 2.24
2453 3419 4.283722 CACCTCTAAGTACCCACTGAAACT 59.716 45.833 0.00 0.00 34.36 2.66
2454 3420 4.040095 ACACCTCTAAGTACCCACTGAAAC 59.960 45.833 0.00 0.00 34.36 2.78
2455 3421 4.228824 ACACCTCTAAGTACCCACTGAAA 58.771 43.478 0.00 0.00 34.36 2.69
2456 3422 3.853207 ACACCTCTAAGTACCCACTGAA 58.147 45.455 0.00 0.00 34.36 3.02
2457 3423 3.537795 ACACCTCTAAGTACCCACTGA 57.462 47.619 0.00 0.00 34.36 3.41
2458 3424 3.576982 TCAACACCTCTAAGTACCCACTG 59.423 47.826 0.00 0.00 34.36 3.66
2459 3425 3.853207 TCAACACCTCTAAGTACCCACT 58.147 45.455 0.00 0.00 36.19 4.00
2460 3426 4.504858 CATCAACACCTCTAAGTACCCAC 58.495 47.826 0.00 0.00 0.00 4.61
2461 3427 3.055385 GCATCAACACCTCTAAGTACCCA 60.055 47.826 0.00 0.00 0.00 4.51
2462 3428 3.055385 TGCATCAACACCTCTAAGTACCC 60.055 47.826 0.00 0.00 0.00 3.69
2463 3429 3.933332 GTGCATCAACACCTCTAAGTACC 59.067 47.826 0.00 0.00 34.35 3.34
2513 3504 6.619437 TCATCTATTTTGGAATGGAGGGAGTA 59.381 38.462 0.00 0.00 36.39 2.59
2515 3506 5.767168 GTCATCTATTTTGGAATGGAGGGAG 59.233 44.000 0.00 0.00 36.39 4.30
2517 3508 4.829492 GGTCATCTATTTTGGAATGGAGGG 59.171 45.833 0.00 0.00 36.39 4.30
2518 3509 4.829492 GGGTCATCTATTTTGGAATGGAGG 59.171 45.833 0.00 0.00 36.39 4.30
2519 3510 5.448654 TGGGTCATCTATTTTGGAATGGAG 58.551 41.667 0.00 0.00 36.39 3.86
2520 3511 5.464588 TGGGTCATCTATTTTGGAATGGA 57.535 39.130 0.00 0.00 37.20 3.41
2521 3512 5.658190 AGTTGGGTCATCTATTTTGGAATGG 59.342 40.000 0.00 0.00 0.00 3.16
2523 3514 7.797121 AAAGTTGGGTCATCTATTTTGGAAT 57.203 32.000 0.00 0.00 0.00 3.01
2524 3515 8.167392 TCTAAAGTTGGGTCATCTATTTTGGAA 58.833 33.333 0.00 0.00 0.00 3.53
2526 3517 7.611855 AGTCTAAAGTTGGGTCATCTATTTTGG 59.388 37.037 0.00 0.00 0.00 3.28
2527 3518 8.567285 AGTCTAAAGTTGGGTCATCTATTTTG 57.433 34.615 0.00 0.00 0.00 2.44
2530 3521 9.892130 CTTTAGTCTAAAGTTGGGTCATCTATT 57.108 33.333 20.10 0.00 40.13 1.73
2564 3555 8.936864 CCGTTCTAAAATAGATGACTCAACTTT 58.063 33.333 0.00 0.00 34.22 2.66
2565 3556 8.311836 TCCGTTCTAAAATAGATGACTCAACTT 58.688 33.333 0.00 0.00 34.22 2.66
2566 3557 7.837863 TCCGTTCTAAAATAGATGACTCAACT 58.162 34.615 0.00 0.00 34.22 3.16
2567 3558 7.222999 CCTCCGTTCTAAAATAGATGACTCAAC 59.777 40.741 0.00 0.00 34.22 3.18
2568 3559 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
2569 3560 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
2570 3561 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
2573 3564 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2575 3566 8.493787 AATACTCCCTCCGTTCTAAAATAGAT 57.506 34.615 0.00 0.00 34.22 1.98
2577 3568 9.694137 CTTAATACTCCCTCCGTTCTAAAATAG 57.306 37.037 0.00 0.00 0.00 1.73
2583 3574 4.539726 TGCTTAATACTCCCTCCGTTCTA 58.460 43.478 0.00 0.00 0.00 2.10
2584 3575 3.371965 TGCTTAATACTCCCTCCGTTCT 58.628 45.455 0.00 0.00 0.00 3.01
2597 3588 4.082787 GCCACTCTTTTGCACTGCTTAATA 60.083 41.667 1.98 0.00 0.00 0.98
2598 3589 3.305608 GCCACTCTTTTGCACTGCTTAAT 60.306 43.478 1.98 0.00 0.00 1.40
2611 3602 1.207329 GGTAGGATCACGCCACTCTTT 59.793 52.381 0.00 0.00 0.00 2.52
2699 3690 7.229506 CCTATATTTGGTTCCTTTGGTCATCTC 59.770 40.741 0.00 0.00 0.00 2.75
2722 3713 1.559065 GCTTGGTGCCTGGTACCCTA 61.559 60.000 28.03 16.44 37.51 3.53
2723 3714 2.907179 GCTTGGTGCCTGGTACCCT 61.907 63.158 28.03 0.00 37.51 4.34
2725 3716 1.675641 CAGCTTGGTGCCTGGTACC 60.676 63.158 25.17 25.17 44.23 3.34
2726 3717 0.537371 AACAGCTTGGTGCCTGGTAC 60.537 55.000 6.35 6.35 44.23 3.34
2727 3718 0.184933 AAACAGCTTGGTGCCTGGTA 59.815 50.000 0.00 0.00 44.23 3.25
2728 3719 1.076044 AAACAGCTTGGTGCCTGGT 60.076 52.632 0.00 0.00 44.23 4.00
2730 3721 0.746063 TTGAAACAGCTTGGTGCCTG 59.254 50.000 0.00 0.00 44.23 4.85
2960 3969 4.992951 GCAACAGCTGGATTTCAGATTTTT 59.007 37.500 19.93 0.00 46.18 1.94
3128 4151 9.178758 GGGAGAGTCTGTAAATATTTTGAACAT 57.821 33.333 5.91 0.00 0.00 2.71
3130 4153 7.201617 CGGGGAGAGTCTGTAAATATTTTGAAC 60.202 40.741 5.91 0.00 0.00 3.18
3131 4154 6.821665 CGGGGAGAGTCTGTAAATATTTTGAA 59.178 38.462 5.91 0.00 0.00 2.69
3133 4156 5.007724 GCGGGGAGAGTCTGTAAATATTTTG 59.992 44.000 5.91 0.00 0.00 2.44
3135 4158 4.163458 TGCGGGGAGAGTCTGTAAATATTT 59.837 41.667 5.89 5.89 0.00 1.40
3136 4159 3.709653 TGCGGGGAGAGTCTGTAAATATT 59.290 43.478 0.00 0.00 0.00 1.28
3137 4160 3.305720 TGCGGGGAGAGTCTGTAAATAT 58.694 45.455 0.00 0.00 0.00 1.28
3138 4161 2.742348 TGCGGGGAGAGTCTGTAAATA 58.258 47.619 0.00 0.00 0.00 1.40
3141 4164 1.344065 TTTGCGGGGAGAGTCTGTAA 58.656 50.000 0.00 0.00 0.00 2.41
3142 4165 1.344065 TTTTGCGGGGAGAGTCTGTA 58.656 50.000 0.00 0.00 0.00 2.74
3143 4166 0.472471 TTTTTGCGGGGAGAGTCTGT 59.528 50.000 0.00 0.00 0.00 3.41
3144 4167 3.322514 TTTTTGCGGGGAGAGTCTG 57.677 52.632 0.00 0.00 0.00 3.51
3214 4239 5.677567 TCACCTATTTTAAGAATCGTCCCC 58.322 41.667 0.00 0.00 0.00 4.81
3310 4345 5.011090 TCACCTCTTGTTCTCCATATTCG 57.989 43.478 0.00 0.00 0.00 3.34
3561 4635 6.152831 TCGAAAGTGAAGATATGAGGAGAACA 59.847 38.462 0.00 0.00 0.00 3.18
3650 4724 7.988599 ACATGTGTTTTACCTTTGTAGACAGTA 59.011 33.333 0.00 0.00 30.40 2.74
3791 4939 2.093447 CGCAACTACTCTCCCATCCTTT 60.093 50.000 0.00 0.00 0.00 3.11
3866 5014 1.298859 GGCGCGAAAGGATGTCAACT 61.299 55.000 12.10 0.00 0.00 3.16
3881 5029 4.704833 TTCTGGTGGAGCAGGCGC 62.705 66.667 0.00 0.00 38.99 6.53
3929 5077 1.112113 GGAGAAGGTCACGGCTCATA 58.888 55.000 0.00 0.00 0.00 2.15
4009 5157 1.296392 CATGTGAGCCCTCGTTCCA 59.704 57.895 0.00 0.00 0.00 3.53
4019 5167 3.393472 CCTTAGAGGCCATGTGAGC 57.607 57.895 5.01 0.00 0.00 4.26
4070 5218 0.178068 CAACCGCATGTAGGTAGGCT 59.822 55.000 13.97 0.00 41.95 4.58
4079 5227 3.198068 GTGTATGATCTCAACCGCATGT 58.802 45.455 0.00 0.00 0.00 3.21
4088 5236 4.207165 TCACATCTCGGTGTATGATCTCA 58.793 43.478 0.00 0.00 39.76 3.27
4193 5341 1.274167 GGAACAGTCGACACATGGGTA 59.726 52.381 19.50 0.00 0.00 3.69
4304 5452 4.502259 GGTTTCGATGATATCAGCTCCACT 60.502 45.833 18.22 0.00 0.00 4.00
4410 5558 2.483363 CGAGCTCTGGATCAATCAGCTT 60.483 50.000 12.85 0.00 40.58 3.74
4416 5564 1.342819 GTAGCCGAGCTCTGGATCAAT 59.657 52.381 23.26 9.17 40.44 2.57
4424 5572 2.408241 GGTGTCGTAGCCGAGCTCT 61.408 63.158 12.85 0.00 45.26 4.09
4599 5747 2.093764 CGTCCTCTTTCTGAGATGCCTT 60.094 50.000 0.00 0.00 45.39 4.35
4600 5748 1.480137 CGTCCTCTTTCTGAGATGCCT 59.520 52.381 0.00 0.00 45.39 4.75
4601 5749 1.933247 CGTCCTCTTTCTGAGATGCC 58.067 55.000 0.00 0.00 45.39 4.40
4677 5825 4.097437 CGAGTGGTTAGTTGACTGGCTATA 59.903 45.833 0.00 0.00 0.00 1.31
4703 5851 0.461870 ATCCGCTAGCATTTGACGCA 60.462 50.000 16.45 0.00 0.00 5.24
4729 5877 4.576216 TTCTTTTCAGCATTTGCCGTTA 57.424 36.364 0.00 0.00 43.38 3.18
4730 5878 3.451141 TTCTTTTCAGCATTTGCCGTT 57.549 38.095 0.00 0.00 43.38 4.44
4733 5881 2.417586 GGCATTCTTTTCAGCATTTGCC 59.582 45.455 0.00 0.00 43.38 4.52
4828 5977 5.854866 CAGTCAAAACATTACAGCACATCAG 59.145 40.000 0.00 0.00 0.00 2.90
4829 5978 5.761003 CAGTCAAAACATTACAGCACATCA 58.239 37.500 0.00 0.00 0.00 3.07
4839 5988 4.791411 GCAAACTCGGCAGTCAAAACATTA 60.791 41.667 0.00 0.00 29.93 1.90
4858 6007 1.472552 CCATCCGAGGTCGTATGCAAA 60.473 52.381 0.00 0.00 34.88 3.68
4910 6081 3.594603 TCCTAACTGCTCGAGGAAAAG 57.405 47.619 15.58 8.55 36.42 2.27
4930 6101 1.957113 GCTCCTGTTTGCCTGGCTAAT 60.957 52.381 21.03 0.00 32.38 1.73
4950 6121 2.124695 GCAAAGGGACCCGCTAGG 60.125 66.667 4.40 0.00 43.78 3.02
5049 6220 1.372997 CTGAGAACACACCCGACGG 60.373 63.158 6.99 6.99 0.00 4.79
5083 6254 1.910772 AGCCTGAACAGCGACTCCT 60.911 57.895 0.00 0.00 34.64 3.69
5113 6284 3.139077 GGGAAACTTATTCCGATGCGAT 58.861 45.455 1.43 0.00 39.46 4.58
5121 6292 3.494573 CGGAGCCTAGGGAAACTTATTCC 60.495 52.174 11.72 0.00 37.86 3.01
5154 6325 4.682714 TGCAAGAGCCCCCTCCCT 62.683 66.667 0.00 0.00 41.13 4.20
5155 6326 2.918300 GATTGCAAGAGCCCCCTCCC 62.918 65.000 4.94 0.00 41.13 4.30
5156 6327 1.454663 GATTGCAAGAGCCCCCTCC 60.455 63.158 4.94 0.00 41.13 4.30
5159 6330 0.106318 AGATGATTGCAAGAGCCCCC 60.106 55.000 4.94 0.00 41.13 5.40
5171 6342 0.683973 CCGCTGGCTCCTAGATGATT 59.316 55.000 0.00 0.00 0.00 2.57
5172 6343 1.190833 CCCGCTGGCTCCTAGATGAT 61.191 60.000 0.00 0.00 0.00 2.45
5272 6443 2.124693 CCACACAACCACCACCCAC 61.125 63.158 0.00 0.00 0.00 4.61
5335 6517 2.223805 GCAACAACACAAAGAAGGAGGG 60.224 50.000 0.00 0.00 0.00 4.30
5358 6540 2.833943 GGGCAAATCAGGACATCCTTTT 59.166 45.455 0.00 0.00 46.09 2.27
5359 6541 2.460669 GGGCAAATCAGGACATCCTTT 58.539 47.619 0.00 0.00 46.09 3.11
5372 6554 2.996734 CCAAGCACCCGGGCAAAT 60.997 61.111 24.08 1.00 35.83 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.