Multiple sequence alignment - TraesCS3A01G047400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G047400 chr3A 100.000 2910 0 0 1 2910 25051157 25054066 0.000000e+00 5374.0
1 TraesCS3A01G047400 chr3A 79.559 2133 320 69 432 2498 25038067 25040149 0.000000e+00 1417.0
2 TraesCS3A01G047400 chr3A 78.001 1491 233 66 874 2320 25043982 25045421 0.000000e+00 848.0
3 TraesCS3A01G047400 chr3A 77.042 967 166 37 865 1813 25060442 25061370 3.350000e-139 505.0
4 TraesCS3A01G047400 chr3A 80.657 274 42 9 425 691 25059987 25060256 4.920000e-48 202.0
5 TraesCS3A01G047400 chr3B 93.249 1896 100 9 415 2309 17316268 17314400 0.000000e+00 2767.0
6 TraesCS3A01G047400 chr3B 80.850 1765 251 49 785 2498 17332938 17331210 0.000000e+00 1306.0
7 TraesCS3A01G047400 chr3B 83.632 1173 144 28 867 2016 17806455 17805308 0.000000e+00 1059.0
8 TraesCS3A01G047400 chr3B 79.107 1455 228 50 943 2358 17284486 17283069 0.000000e+00 933.0
9 TraesCS3A01G047400 chr3B 82.044 1047 143 35 949 1979 17354563 17353546 0.000000e+00 850.0
10 TraesCS3A01G047400 chr3B 92.955 440 28 2 2386 2823 17314401 17313963 3.160000e-179 638.0
11 TraesCS3A01G047400 chr3B 79.779 272 50 3 424 691 17254115 17253845 2.960000e-45 193.0
12 TraesCS3A01G047400 chr3B 82.022 178 10 7 203 364 17316588 17316417 6.540000e-27 132.0
13 TraesCS3A01G047400 chr3B 100.000 29 0 0 149 177 17316613 17316585 1.000000e-03 54.7
14 TraesCS3A01G047400 chr3B 100.000 28 0 0 1854 1881 730317583 730317556 5.000000e-03 52.8
15 TraesCS3A01G047400 chr3D 92.679 1366 72 12 261 1617 12093979 12092633 0.000000e+00 1943.0
16 TraesCS3A01G047400 chr3D 94.348 1150 37 7 1684 2823 12092634 12091503 0.000000e+00 1738.0
17 TraesCS3A01G047400 chr3D 79.832 2142 308 74 432 2498 12126425 12124333 0.000000e+00 1448.0
18 TraesCS3A01G047400 chr3D 76.008 967 173 41 865 1813 12059779 12058854 2.060000e-121 446.0
19 TraesCS3A01G047400 chr3D 74.954 547 99 27 877 1402 12114881 12114352 1.760000e-52 217.0
20 TraesCS3A01G047400 chr3D 81.319 273 44 5 424 691 12060235 12059965 6.320000e-52 215.0
21 TraesCS3A01G047400 chr3D 93.333 60 2 1 2819 2876 12090647 12090588 1.440000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G047400 chr3A 25051157 25054066 2909 False 5374.000 5374 100.000000 1 2910 1 chr3A.!!$F1 2909
1 TraesCS3A01G047400 chr3A 25038067 25045421 7354 False 1132.500 1417 78.780000 432 2498 2 chr3A.!!$F2 2066
2 TraesCS3A01G047400 chr3A 25059987 25061370 1383 False 353.500 505 78.849500 425 1813 2 chr3A.!!$F3 1388
3 TraesCS3A01G047400 chr3B 17331210 17332938 1728 True 1306.000 1306 80.850000 785 2498 1 chr3B.!!$R3 1713
4 TraesCS3A01G047400 chr3B 17805308 17806455 1147 True 1059.000 1059 83.632000 867 2016 1 chr3B.!!$R5 1149
5 TraesCS3A01G047400 chr3B 17283069 17284486 1417 True 933.000 933 79.107000 943 2358 1 chr3B.!!$R2 1415
6 TraesCS3A01G047400 chr3B 17313963 17316613 2650 True 897.925 2767 92.056500 149 2823 4 chr3B.!!$R7 2674
7 TraesCS3A01G047400 chr3B 17353546 17354563 1017 True 850.000 850 82.044000 949 1979 1 chr3B.!!$R4 1030
8 TraesCS3A01G047400 chr3D 12124333 12126425 2092 True 1448.000 1448 79.832000 432 2498 1 chr3D.!!$R2 2066
9 TraesCS3A01G047400 chr3D 12090588 12093979 3391 True 1256.300 1943 93.453333 261 2876 3 chr3D.!!$R4 2615
10 TraesCS3A01G047400 chr3D 12058854 12060235 1381 True 330.500 446 78.663500 424 1813 2 chr3D.!!$R3 1389
11 TraesCS3A01G047400 chr3D 12114352 12114881 529 True 217.000 217 74.954000 877 1402 1 chr3D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.035534 ACCACACAGCTCACACACAA 60.036 50.0 0.00 0.0 0.00 3.33 F
72 73 0.040514 CGCGTGATCAGCAAAACCAA 60.041 50.0 14.69 0.0 34.19 3.67 F
122 123 0.250597 AAACTTTCCCTCCGTTCCCG 60.251 55.0 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1642 0.037326 TCACACGATTCAGTGAGGGC 60.037 55.000 13.15 0.0 44.43 5.19 R
1728 2038 5.315195 CAAACGCCATTGCATTCAATTTAC 58.685 37.500 0.00 0.0 40.74 2.01 R
2016 2341 7.201652 GGAGCTACTTGATAACAAAATGGAGTC 60.202 40.741 0.00 0.0 35.49 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.112341 CGCTTGCTTCCAGGCAGC 62.112 66.667 3.73 3.73 43.60 5.25
18 19 2.987547 GCTTGCTTCCAGGCAGCA 60.988 61.111 10.11 10.11 45.73 4.41
21 22 3.888460 TGCTTCCAGGCAGCACCA 61.888 61.111 10.11 0.00 42.49 4.17
22 23 3.368571 GCTTCCAGGCAGCACCAC 61.369 66.667 6.16 0.00 43.14 4.16
23 24 2.113774 CTTCCAGGCAGCACCACA 59.886 61.111 0.00 0.00 43.14 4.17
24 25 2.203337 TTCCAGGCAGCACCACAC 60.203 61.111 0.00 0.00 43.14 3.82
25 26 2.963928 CTTCCAGGCAGCACCACACA 62.964 60.000 0.00 0.00 43.14 3.72
26 27 2.963928 TTCCAGGCAGCACCACACAG 62.964 60.000 0.00 0.00 43.14 3.66
27 28 3.667282 CAGGCAGCACCACACAGC 61.667 66.667 0.00 0.00 43.14 4.40
28 29 3.882326 AGGCAGCACCACACAGCT 61.882 61.111 0.00 0.00 43.14 4.24
29 30 3.360340 GGCAGCACCACACAGCTC 61.360 66.667 0.00 0.00 39.50 4.09
30 31 2.592574 GCAGCACCACACAGCTCA 60.593 61.111 0.00 0.00 39.50 4.26
31 32 2.901292 GCAGCACCACACAGCTCAC 61.901 63.158 0.00 0.00 39.50 3.51
32 33 1.524393 CAGCACCACACAGCTCACA 60.524 57.895 0.00 0.00 39.50 3.58
33 34 1.524621 AGCACCACACAGCTCACAC 60.525 57.895 0.00 0.00 36.00 3.82
34 35 1.819208 GCACCACACAGCTCACACA 60.819 57.895 0.00 0.00 0.00 3.72
35 36 2.016961 CACCACACAGCTCACACAC 58.983 57.895 0.00 0.00 0.00 3.82
36 37 0.744057 CACCACACAGCTCACACACA 60.744 55.000 0.00 0.00 0.00 3.72
37 38 0.035534 ACCACACAGCTCACACACAA 60.036 50.000 0.00 0.00 0.00 3.33
38 39 1.093972 CCACACAGCTCACACACAAA 58.906 50.000 0.00 0.00 0.00 2.83
39 40 1.202177 CCACACAGCTCACACACAAAC 60.202 52.381 0.00 0.00 0.00 2.93
40 41 0.726827 ACACAGCTCACACACAAACG 59.273 50.000 0.00 0.00 0.00 3.60
41 42 0.726827 CACAGCTCACACACAAACGT 59.273 50.000 0.00 0.00 0.00 3.99
42 43 1.130373 CACAGCTCACACACAAACGTT 59.870 47.619 0.00 0.00 0.00 3.99
43 44 1.130373 ACAGCTCACACACAAACGTTG 59.870 47.619 0.00 0.00 0.00 4.10
44 45 1.130373 CAGCTCACACACAAACGTTGT 59.870 47.619 0.00 0.00 46.75 3.32
45 46 1.810151 AGCTCACACACAAACGTTGTT 59.190 42.857 0.00 0.00 43.23 2.83
46 47 1.910819 GCTCACACACAAACGTTGTTG 59.089 47.619 0.00 4.58 43.23 3.33
47 48 2.413502 GCTCACACACAAACGTTGTTGA 60.414 45.455 14.58 8.99 43.23 3.18
48 49 3.160545 CTCACACACAAACGTTGTTGAC 58.839 45.455 14.58 0.00 43.23 3.18
49 50 2.548480 TCACACACAAACGTTGTTGACA 59.452 40.909 14.58 0.00 43.23 3.58
50 51 2.654528 CACACACAAACGTTGTTGACAC 59.345 45.455 14.58 0.00 43.23 3.67
51 52 2.290916 ACACACAAACGTTGTTGACACA 59.709 40.909 14.58 0.00 43.23 3.72
52 53 3.057876 ACACACAAACGTTGTTGACACAT 60.058 39.130 14.58 0.00 43.23 3.21
53 54 3.541916 CACACAAACGTTGTTGACACATC 59.458 43.478 14.58 0.00 43.23 3.06
54 55 2.775687 CACAAACGTTGTTGACACATCG 59.224 45.455 0.00 4.66 46.97 3.84
55 56 1.772966 CAAACGTTGTTGACACATCGC 59.227 47.619 0.00 0.00 45.99 4.58
56 57 0.042535 AACGTTGTTGACACATCGCG 60.043 50.000 0.00 0.00 45.99 5.87
57 58 1.149361 ACGTTGTTGACACATCGCGT 61.149 50.000 5.77 0.00 45.99 6.01
66 67 4.596311 ACATCGCGTGATCAGCAA 57.404 50.000 8.88 0.29 30.49 3.91
67 68 2.839629 ACATCGCGTGATCAGCAAA 58.160 47.368 8.88 5.32 30.49 3.68
68 69 1.155889 ACATCGCGTGATCAGCAAAA 58.844 45.000 8.88 3.42 30.49 2.44
69 70 1.135972 ACATCGCGTGATCAGCAAAAC 60.136 47.619 8.88 0.00 30.49 2.43
70 71 0.447801 ATCGCGTGATCAGCAAAACC 59.552 50.000 5.43 0.00 34.19 3.27
71 72 0.882484 TCGCGTGATCAGCAAAACCA 60.882 50.000 5.77 0.00 34.19 3.67
72 73 0.040514 CGCGTGATCAGCAAAACCAA 60.041 50.000 14.69 0.00 34.19 3.67
73 74 1.599171 CGCGTGATCAGCAAAACCAAA 60.599 47.619 14.69 0.00 34.19 3.28
74 75 2.053627 GCGTGATCAGCAAAACCAAAG 58.946 47.619 0.00 0.00 34.19 2.77
75 76 2.053627 CGTGATCAGCAAAACCAAAGC 58.946 47.619 0.00 0.00 0.00 3.51
76 77 2.407090 GTGATCAGCAAAACCAAAGCC 58.593 47.619 0.00 0.00 0.00 4.35
77 78 2.037901 TGATCAGCAAAACCAAAGCCA 58.962 42.857 0.00 0.00 0.00 4.75
78 79 2.433604 TGATCAGCAAAACCAAAGCCAA 59.566 40.909 0.00 0.00 0.00 4.52
79 80 3.071312 TGATCAGCAAAACCAAAGCCAAT 59.929 39.130 0.00 0.00 0.00 3.16
80 81 3.110447 TCAGCAAAACCAAAGCCAATC 57.890 42.857 0.00 0.00 0.00 2.67
81 82 2.699846 TCAGCAAAACCAAAGCCAATCT 59.300 40.909 0.00 0.00 0.00 2.40
82 83 2.803956 CAGCAAAACCAAAGCCAATCTG 59.196 45.455 0.00 0.00 0.00 2.90
83 84 1.532437 GCAAAACCAAAGCCAATCTGC 59.468 47.619 0.00 0.00 0.00 4.26
84 85 1.794116 CAAAACCAAAGCCAATCTGCG 59.206 47.619 0.00 0.00 36.02 5.18
85 86 1.327303 AAACCAAAGCCAATCTGCGA 58.673 45.000 0.00 0.00 36.02 5.10
86 87 1.549203 AACCAAAGCCAATCTGCGAT 58.451 45.000 0.00 0.00 36.02 4.58
87 88 2.418368 ACCAAAGCCAATCTGCGATA 57.582 45.000 0.00 0.00 36.02 2.92
88 89 2.017049 ACCAAAGCCAATCTGCGATAC 58.983 47.619 0.00 0.00 36.02 2.24
89 90 2.016318 CCAAAGCCAATCTGCGATACA 58.984 47.619 0.00 0.00 36.02 2.29
90 91 2.423185 CCAAAGCCAATCTGCGATACAA 59.577 45.455 0.00 0.00 36.02 2.41
91 92 3.119531 CCAAAGCCAATCTGCGATACAAA 60.120 43.478 0.00 0.00 36.02 2.83
92 93 3.764885 AAGCCAATCTGCGATACAAAC 57.235 42.857 0.00 0.00 36.02 2.93
93 94 1.665679 AGCCAATCTGCGATACAAACG 59.334 47.619 0.00 0.00 36.02 3.60
94 95 1.396996 GCCAATCTGCGATACAAACGT 59.603 47.619 0.00 0.00 0.00 3.99
95 96 2.159572 GCCAATCTGCGATACAAACGTT 60.160 45.455 0.00 0.00 0.00 3.99
96 97 3.416277 CCAATCTGCGATACAAACGTTG 58.584 45.455 0.00 0.00 0.00 4.10
98 99 4.463209 CAATCTGCGATACAAACGTTGTT 58.537 39.130 0.00 0.00 42.22 2.83
99 100 3.513462 TCTGCGATACAAACGTTGTTG 57.487 42.857 0.00 0.00 42.22 3.33
100 101 3.124560 TCTGCGATACAAACGTTGTTGA 58.875 40.909 0.00 0.00 42.22 3.18
101 102 3.060138 TCTGCGATACAAACGTTGTTGAC 60.060 43.478 0.00 0.00 42.22 3.18
102 103 2.608090 TGCGATACAAACGTTGTTGACA 59.392 40.909 0.00 0.00 42.22 3.58
103 104 3.063588 TGCGATACAAACGTTGTTGACAA 59.936 39.130 0.00 0.00 42.22 3.18
104 105 4.029704 GCGATACAAACGTTGTTGACAAA 58.970 39.130 0.00 0.00 42.22 2.83
105 106 4.496183 GCGATACAAACGTTGTTGACAAAA 59.504 37.500 0.00 0.00 42.22 2.44
106 107 5.551187 GCGATACAAACGTTGTTGACAAAAC 60.551 40.000 0.00 0.00 42.22 2.43
107 108 5.735427 CGATACAAACGTTGTTGACAAAACT 59.265 36.000 0.00 0.00 42.22 2.66
108 109 6.249682 CGATACAAACGTTGTTGACAAAACTT 59.750 34.615 0.00 0.00 42.22 2.66
109 110 7.201282 CGATACAAACGTTGTTGACAAAACTTT 60.201 33.333 0.00 0.00 42.22 2.66
110 111 6.205337 ACAAACGTTGTTGACAAAACTTTC 57.795 33.333 0.00 0.00 42.22 2.62
111 112 5.176039 ACAAACGTTGTTGACAAAACTTTCC 59.824 36.000 0.00 0.00 42.22 3.13
112 113 3.840468 ACGTTGTTGACAAAACTTTCCC 58.160 40.909 0.00 0.00 37.63 3.97
113 114 3.508402 ACGTTGTTGACAAAACTTTCCCT 59.492 39.130 0.00 0.00 37.63 4.20
114 115 4.102649 CGTTGTTGACAAAACTTTCCCTC 58.897 43.478 0.00 0.00 37.63 4.30
115 116 4.430007 GTTGTTGACAAAACTTTCCCTCC 58.570 43.478 0.00 0.00 37.63 4.30
116 117 2.685897 TGTTGACAAAACTTTCCCTCCG 59.314 45.455 0.00 0.00 0.00 4.63
117 118 2.686405 GTTGACAAAACTTTCCCTCCGT 59.314 45.455 0.00 0.00 0.00 4.69
118 119 3.007473 TGACAAAACTTTCCCTCCGTT 57.993 42.857 0.00 0.00 0.00 4.44
119 120 2.946990 TGACAAAACTTTCCCTCCGTTC 59.053 45.455 0.00 0.00 0.00 3.95
120 121 2.292569 GACAAAACTTTCCCTCCGTTCC 59.707 50.000 0.00 0.00 0.00 3.62
121 122 1.611977 CAAAACTTTCCCTCCGTTCCC 59.388 52.381 0.00 0.00 0.00 3.97
122 123 0.250597 AAACTTTCCCTCCGTTCCCG 60.251 55.000 0.00 0.00 0.00 5.14
123 124 2.436115 CTTTCCCTCCGTTCCCGC 60.436 66.667 0.00 0.00 0.00 6.13
124 125 3.971109 CTTTCCCTCCGTTCCCGCC 62.971 68.421 0.00 0.00 0.00 6.13
127 128 4.338710 CCCTCCGTTCCCGCCAAA 62.339 66.667 0.00 0.00 0.00 3.28
128 129 2.281900 CCTCCGTTCCCGCCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
129 130 1.899534 CCTCCGTTCCCGCCAAAAA 60.900 57.895 0.00 0.00 0.00 1.94
177 178 2.046285 CCAGAAACCATCCACCCGC 61.046 63.158 0.00 0.00 0.00 6.13
178 179 1.002134 CAGAAACCATCCACCCGCT 60.002 57.895 0.00 0.00 0.00 5.52
179 180 0.609131 CAGAAACCATCCACCCGCTT 60.609 55.000 0.00 0.00 0.00 4.68
180 181 0.609131 AGAAACCATCCACCCGCTTG 60.609 55.000 0.00 0.00 0.00 4.01
181 182 1.595093 GAAACCATCCACCCGCTTGG 61.595 60.000 0.00 0.00 41.37 3.61
194 195 3.677648 CTTGGTCGGTCCGTCGGT 61.678 66.667 11.88 0.00 39.52 4.69
195 196 3.909258 CTTGGTCGGTCCGTCGGTG 62.909 68.421 11.88 2.87 39.52 4.94
198 199 4.712425 GTCGGTCCGTCGGTGGTG 62.712 72.222 11.88 0.24 0.00 4.17
200 201 4.712425 CGGTCCGTCGGTGGTGTC 62.712 72.222 11.88 0.00 0.00 3.67
201 202 3.300765 GGTCCGTCGGTGGTGTCT 61.301 66.667 11.88 0.00 0.00 3.41
202 203 2.257676 GTCCGTCGGTGGTGTCTC 59.742 66.667 11.88 0.00 0.00 3.36
203 204 2.987547 TCCGTCGGTGGTGTCTCC 60.988 66.667 11.88 0.00 0.00 3.71
204 205 4.065281 CCGTCGGTGGTGTCTCCC 62.065 72.222 2.08 0.00 34.77 4.30
205 206 4.415332 CGTCGGTGGTGTCTCCCG 62.415 72.222 0.00 0.00 43.03 5.14
224 225 2.136229 GCCCAAATCCAGCCCATCC 61.136 63.158 0.00 0.00 0.00 3.51
227 228 0.826062 CCAAATCCAGCCCATCCAAC 59.174 55.000 0.00 0.00 0.00 3.77
228 229 0.826062 CAAATCCAGCCCATCCAACC 59.174 55.000 0.00 0.00 0.00 3.77
229 230 0.325577 AAATCCAGCCCATCCAACCC 60.326 55.000 0.00 0.00 0.00 4.11
230 231 1.224003 AATCCAGCCCATCCAACCCT 61.224 55.000 0.00 0.00 0.00 4.34
231 232 1.649271 ATCCAGCCCATCCAACCCTC 61.649 60.000 0.00 0.00 0.00 4.30
264 265 2.067365 AAAACGAAGCAAACCCTCCT 57.933 45.000 0.00 0.00 0.00 3.69
398 505 0.463654 GGCAGGCGTGATGGTATTCA 60.464 55.000 11.29 0.00 0.00 2.57
712 842 2.359975 CCACTGAACTTCGCCCCC 60.360 66.667 0.00 0.00 0.00 5.40
767 921 0.251634 CTCCTCTTGCTCCAAGGGAC 59.748 60.000 6.42 0.00 44.03 4.46
790 944 2.732366 ACATCGATGATCACTACGTGC 58.268 47.619 31.33 0.00 32.98 5.34
925 1098 2.040412 ACCAGGTGTTTCAGATCCCTTC 59.960 50.000 0.00 0.00 0.00 3.46
990 1193 0.533755 CGAATGGCCTCCATCTCCAC 60.534 60.000 3.32 0.00 44.40 4.02
1055 1258 1.416401 AGGCTGTTTGTTCGAGAAGGA 59.584 47.619 0.00 0.00 0.00 3.36
1150 1359 5.798125 TCCCTTTATGTGCATTGTCAAAA 57.202 34.783 0.00 0.00 0.00 2.44
1238 1462 8.445275 TTTTAATCACATATAATCCTGTGCGT 57.555 30.769 0.18 0.00 41.96 5.24
1249 1474 4.789012 ATCCTGTGCGTTGAATTTCAAT 57.211 36.364 14.54 0.00 38.79 2.57
1412 1642 5.107133 AGAATACTCACATTCGGGTTTACG 58.893 41.667 0.00 0.00 39.45 3.18
1728 2038 4.873746 TTTTGAGTAGGTCAGAGGACTG 57.126 45.455 0.00 0.00 43.77 3.51
1946 2266 8.115491 TCGTCTCAAACATTATCAGTTTATCG 57.885 34.615 0.00 0.00 37.10 2.92
2496 2846 1.266178 TCTGCTGTTGCTAGCCAGTA 58.734 50.000 18.53 14.56 43.02 2.74
2498 2848 0.684535 TGCTGTTGCTAGCCAGTACA 59.315 50.000 18.53 13.33 43.02 2.90
2522 2872 5.654650 ACCTTGTATTGTTCCACAACTTTGA 59.345 36.000 0.00 0.00 41.40 2.69
2529 2879 4.527944 TGTTCCACAACTTTGATACACCA 58.472 39.130 0.00 0.00 33.17 4.17
2712 3064 3.135348 TGAGATGGTATCAGAGGCCTTTG 59.865 47.826 17.22 17.22 0.00 2.77
2749 3101 5.929697 TGATGATAGAAATGAACCGCATC 57.070 39.130 0.00 0.00 35.78 3.91
2777 3129 1.549950 CCACTTGTTGGGCCACCTATT 60.550 52.381 5.23 0.00 42.54 1.73
2779 3131 1.427368 ACTTGTTGGGCCACCTATTGA 59.573 47.619 5.23 0.00 37.76 2.57
2810 3162 0.741221 GGTGAGGAGGCGCTTAGTTG 60.741 60.000 7.64 0.00 0.00 3.16
2818 3170 0.521735 GGCGCTTAGTTGGTTTCCTG 59.478 55.000 7.64 0.00 0.00 3.86
2823 3175 4.755411 CGCTTAGTTGGTTTCCTGATAGA 58.245 43.478 0.00 0.00 0.00 1.98
2824 3176 4.567159 CGCTTAGTTGGTTTCCTGATAGAC 59.433 45.833 0.00 0.00 0.00 2.59
2825 3177 4.876679 GCTTAGTTGGTTTCCTGATAGACC 59.123 45.833 0.00 0.00 0.00 3.85
2866 8309 5.479306 AGAGAAGTAGCACATTTTCGCTTA 58.521 37.500 0.00 0.00 39.70 3.09
2876 8319 5.088739 CACATTTTCGCTTACAGGTTCATC 58.911 41.667 0.00 0.00 0.00 2.92
2877 8320 5.003804 ACATTTTCGCTTACAGGTTCATCT 58.996 37.500 0.00 0.00 0.00 2.90
2879 8322 6.092259 ACATTTTCGCTTACAGGTTCATCTAC 59.908 38.462 0.00 0.00 0.00 2.59
2880 8323 3.416119 TCGCTTACAGGTTCATCTACG 57.584 47.619 0.00 0.00 0.00 3.51
2881 8324 3.011818 TCGCTTACAGGTTCATCTACGA 58.988 45.455 0.00 0.00 0.00 3.43
2882 8325 3.441222 TCGCTTACAGGTTCATCTACGAA 59.559 43.478 0.00 0.00 0.00 3.85
2883 8326 4.082625 TCGCTTACAGGTTCATCTACGAAA 60.083 41.667 0.00 0.00 0.00 3.46
2884 8327 4.624024 CGCTTACAGGTTCATCTACGAAAA 59.376 41.667 0.00 0.00 0.00 2.29
2885 8328 5.119588 CGCTTACAGGTTCATCTACGAAAAA 59.880 40.000 0.00 0.00 0.00 1.94
2900 8343 3.233953 AAAAAGGTTCCCCCGCTTT 57.766 47.368 0.00 0.00 38.74 3.51
2902 8345 1.919240 AAAAGGTTCCCCCGCTTTAG 58.081 50.000 0.00 0.00 38.74 1.85
2907 8350 3.053826 AGGTTCCCCCGCTTTAGATTAT 58.946 45.455 0.00 0.00 38.74 1.28
2909 8352 4.661709 AGGTTCCCCCGCTTTAGATTATAA 59.338 41.667 0.00 0.00 38.74 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.112341 GCTGCCTGGAAGCAAGCG 62.112 66.667 22.18 0.00 43.52 4.68
5 6 3.368571 GTGGTGCTGCCTGGAAGC 61.369 66.667 20.38 20.38 41.22 3.86
6 7 2.113774 TGTGGTGCTGCCTGGAAG 59.886 61.111 0.00 0.00 38.35 3.46
7 8 2.203337 GTGTGGTGCTGCCTGGAA 60.203 61.111 0.00 0.00 38.35 3.53
8 9 3.480679 CTGTGTGGTGCTGCCTGGA 62.481 63.158 0.00 0.00 38.35 3.86
9 10 2.981909 CTGTGTGGTGCTGCCTGG 60.982 66.667 0.00 0.00 38.35 4.45
10 11 3.667282 GCTGTGTGGTGCTGCCTG 61.667 66.667 0.00 0.00 38.35 4.85
11 12 3.839353 GAGCTGTGTGGTGCTGCCT 62.839 63.158 0.00 0.00 39.91 4.75
12 13 3.360340 GAGCTGTGTGGTGCTGCC 61.360 66.667 0.00 0.00 39.91 4.85
13 14 2.592574 TGAGCTGTGTGGTGCTGC 60.593 61.111 0.00 0.00 39.91 5.25
14 15 1.524393 TGTGAGCTGTGTGGTGCTG 60.524 57.895 0.00 0.00 39.91 4.41
15 16 1.524621 GTGTGAGCTGTGTGGTGCT 60.525 57.895 0.00 0.00 42.82 4.40
16 17 1.819208 TGTGTGAGCTGTGTGGTGC 60.819 57.895 0.00 0.00 0.00 5.01
17 18 0.744057 TGTGTGTGAGCTGTGTGGTG 60.744 55.000 0.00 0.00 0.00 4.17
18 19 0.035534 TTGTGTGTGAGCTGTGTGGT 60.036 50.000 0.00 0.00 0.00 4.16
19 20 1.093972 TTTGTGTGTGAGCTGTGTGG 58.906 50.000 0.00 0.00 0.00 4.17
20 21 1.529622 CGTTTGTGTGTGAGCTGTGTG 60.530 52.381 0.00 0.00 0.00 3.82
21 22 0.726827 CGTTTGTGTGTGAGCTGTGT 59.273 50.000 0.00 0.00 0.00 3.72
22 23 0.726827 ACGTTTGTGTGTGAGCTGTG 59.273 50.000 0.00 0.00 0.00 3.66
23 24 1.130373 CAACGTTTGTGTGTGAGCTGT 59.870 47.619 0.00 0.00 0.00 4.40
24 25 1.130373 ACAACGTTTGTGTGTGAGCTG 59.870 47.619 0.00 0.00 43.48 4.24
25 26 1.448985 ACAACGTTTGTGTGTGAGCT 58.551 45.000 0.00 0.00 43.48 4.09
26 27 1.910819 CAACAACGTTTGTGTGTGAGC 59.089 47.619 0.00 0.00 44.59 4.26
27 28 3.160545 GTCAACAACGTTTGTGTGTGAG 58.839 45.455 0.00 0.00 44.59 3.51
28 29 2.548480 TGTCAACAACGTTTGTGTGTGA 59.452 40.909 0.00 0.00 44.59 3.58
29 30 2.654528 GTGTCAACAACGTTTGTGTGTG 59.345 45.455 0.00 0.00 44.59 3.82
30 31 2.290916 TGTGTCAACAACGTTTGTGTGT 59.709 40.909 0.00 0.00 44.59 3.72
31 32 2.922384 TGTGTCAACAACGTTTGTGTG 58.078 42.857 0.00 0.00 44.59 3.82
32 33 3.726486 CGATGTGTCAACAACGTTTGTGT 60.726 43.478 0.00 0.00 44.75 3.72
33 34 2.775687 CGATGTGTCAACAACGTTTGTG 59.224 45.455 0.00 0.00 44.75 3.33
34 35 3.046285 CGATGTGTCAACAACGTTTGT 57.954 42.857 0.00 0.00 44.75 2.83
40 41 3.057018 CACGCGATGTGTCAACAAC 57.943 52.632 15.93 0.00 43.88 3.32
49 50 1.135972 GTTTTGCTGATCACGCGATGT 60.136 47.619 15.93 0.00 29.66 3.06
50 51 1.527696 GTTTTGCTGATCACGCGATG 58.472 50.000 15.93 7.85 29.66 3.84
51 52 0.447801 GGTTTTGCTGATCACGCGAT 59.552 50.000 15.93 0.00 33.31 4.58
52 53 0.882484 TGGTTTTGCTGATCACGCGA 60.882 50.000 15.93 7.54 0.00 5.87
53 54 0.040514 TTGGTTTTGCTGATCACGCG 60.041 50.000 3.53 3.53 0.00 6.01
54 55 2.053627 CTTTGGTTTTGCTGATCACGC 58.946 47.619 9.41 9.41 0.00 5.34
55 56 2.053627 GCTTTGGTTTTGCTGATCACG 58.946 47.619 0.00 0.00 0.00 4.35
56 57 2.224018 TGGCTTTGGTTTTGCTGATCAC 60.224 45.455 0.00 0.00 0.00 3.06
57 58 2.037901 TGGCTTTGGTTTTGCTGATCA 58.962 42.857 0.00 0.00 0.00 2.92
58 59 2.818130 TGGCTTTGGTTTTGCTGATC 57.182 45.000 0.00 0.00 0.00 2.92
59 60 3.325716 AGATTGGCTTTGGTTTTGCTGAT 59.674 39.130 0.00 0.00 0.00 2.90
60 61 2.699846 AGATTGGCTTTGGTTTTGCTGA 59.300 40.909 0.00 0.00 0.00 4.26
61 62 2.803956 CAGATTGGCTTTGGTTTTGCTG 59.196 45.455 0.00 0.00 0.00 4.41
62 63 2.807837 GCAGATTGGCTTTGGTTTTGCT 60.808 45.455 0.00 0.00 0.00 3.91
63 64 1.532437 GCAGATTGGCTTTGGTTTTGC 59.468 47.619 0.00 0.00 0.00 3.68
64 65 1.794116 CGCAGATTGGCTTTGGTTTTG 59.206 47.619 0.00 0.00 0.00 2.44
65 66 1.686052 TCGCAGATTGGCTTTGGTTTT 59.314 42.857 0.00 0.00 0.00 2.43
66 67 1.327303 TCGCAGATTGGCTTTGGTTT 58.673 45.000 0.00 0.00 0.00 3.27
67 68 1.549203 ATCGCAGATTGGCTTTGGTT 58.451 45.000 0.00 0.00 45.12 3.67
68 69 2.017049 GTATCGCAGATTGGCTTTGGT 58.983 47.619 0.00 0.00 45.12 3.67
69 70 2.016318 TGTATCGCAGATTGGCTTTGG 58.984 47.619 0.00 0.00 45.12 3.28
70 71 3.763097 TTGTATCGCAGATTGGCTTTG 57.237 42.857 0.00 0.00 45.12 2.77
71 72 3.426159 CGTTTGTATCGCAGATTGGCTTT 60.426 43.478 0.00 0.00 45.12 3.51
72 73 2.095853 CGTTTGTATCGCAGATTGGCTT 59.904 45.455 0.00 0.00 45.12 4.35
73 74 1.665679 CGTTTGTATCGCAGATTGGCT 59.334 47.619 0.00 0.00 45.12 4.75
74 75 1.396996 ACGTTTGTATCGCAGATTGGC 59.603 47.619 0.00 0.00 45.12 4.52
75 76 3.120338 ACAACGTTTGTATCGCAGATTGG 60.120 43.478 0.00 0.00 43.27 3.16
76 77 4.065423 ACAACGTTTGTATCGCAGATTG 57.935 40.909 0.00 0.00 43.27 2.67
77 78 4.212425 TCAACAACGTTTGTATCGCAGATT 59.788 37.500 0.00 0.00 44.59 2.40
78 79 3.743911 TCAACAACGTTTGTATCGCAGAT 59.256 39.130 0.00 0.00 44.59 2.90
79 80 3.060138 GTCAACAACGTTTGTATCGCAGA 60.060 43.478 0.00 0.00 44.59 4.26
80 81 3.215244 GTCAACAACGTTTGTATCGCAG 58.785 45.455 0.00 0.00 44.59 5.18
81 82 2.608090 TGTCAACAACGTTTGTATCGCA 59.392 40.909 0.00 0.00 44.59 5.10
82 83 3.241783 TGTCAACAACGTTTGTATCGC 57.758 42.857 0.00 0.00 44.59 4.58
83 84 5.735427 AGTTTTGTCAACAACGTTTGTATCG 59.265 36.000 0.00 0.00 44.59 2.92
84 85 7.500807 AAGTTTTGTCAACAACGTTTGTATC 57.499 32.000 0.00 0.00 44.59 2.24
85 86 7.062488 GGAAAGTTTTGTCAACAACGTTTGTAT 59.938 33.333 0.00 0.00 44.59 2.29
86 87 6.362820 GGAAAGTTTTGTCAACAACGTTTGTA 59.637 34.615 0.00 0.00 44.59 2.41
88 89 5.388994 GGGAAAGTTTTGTCAACAACGTTTG 60.389 40.000 0.00 0.00 35.28 2.93
89 90 4.687018 GGGAAAGTTTTGTCAACAACGTTT 59.313 37.500 0.00 0.00 35.28 3.60
90 91 4.021807 AGGGAAAGTTTTGTCAACAACGTT 60.022 37.500 0.00 0.00 35.28 3.99
91 92 3.508402 AGGGAAAGTTTTGTCAACAACGT 59.492 39.130 0.00 0.00 35.28 3.99
92 93 4.102649 GAGGGAAAGTTTTGTCAACAACG 58.897 43.478 0.00 0.00 35.28 4.10
93 94 4.430007 GGAGGGAAAGTTTTGTCAACAAC 58.570 43.478 0.00 0.00 35.28 3.32
94 95 3.129638 CGGAGGGAAAGTTTTGTCAACAA 59.870 43.478 0.00 0.00 0.00 2.83
95 96 2.685897 CGGAGGGAAAGTTTTGTCAACA 59.314 45.455 0.00 0.00 0.00 3.33
96 97 2.686405 ACGGAGGGAAAGTTTTGTCAAC 59.314 45.455 0.00 0.00 0.00 3.18
97 98 3.007473 ACGGAGGGAAAGTTTTGTCAA 57.993 42.857 0.00 0.00 0.00 3.18
98 99 2.721425 ACGGAGGGAAAGTTTTGTCA 57.279 45.000 0.00 0.00 0.00 3.58
99 100 2.292569 GGAACGGAGGGAAAGTTTTGTC 59.707 50.000 0.00 0.00 0.00 3.18
100 101 2.304092 GGAACGGAGGGAAAGTTTTGT 58.696 47.619 0.00 0.00 0.00 2.83
101 102 1.611977 GGGAACGGAGGGAAAGTTTTG 59.388 52.381 0.00 0.00 0.00 2.44
102 103 1.991121 GGGAACGGAGGGAAAGTTTT 58.009 50.000 0.00 0.00 0.00 2.43
103 104 3.739703 GGGAACGGAGGGAAAGTTT 57.260 52.632 0.00 0.00 0.00 2.66
127 128 7.016268 GGGAGAGGAGGGAAAGTTTTTATTTTT 59.984 37.037 0.00 0.00 0.00 1.94
128 129 6.497259 GGGAGAGGAGGGAAAGTTTTTATTTT 59.503 38.462 0.00 0.00 0.00 1.82
129 130 6.017192 GGGAGAGGAGGGAAAGTTTTTATTT 58.983 40.000 0.00 0.00 0.00 1.40
130 131 5.518546 GGGGAGAGGAGGGAAAGTTTTTATT 60.519 44.000 0.00 0.00 0.00 1.40
131 132 4.017407 GGGGAGAGGAGGGAAAGTTTTTAT 60.017 45.833 0.00 0.00 0.00 1.40
132 133 3.332783 GGGGAGAGGAGGGAAAGTTTTTA 59.667 47.826 0.00 0.00 0.00 1.52
133 134 2.110188 GGGGAGAGGAGGGAAAGTTTTT 59.890 50.000 0.00 0.00 0.00 1.94
134 135 1.711375 GGGGAGAGGAGGGAAAGTTTT 59.289 52.381 0.00 0.00 0.00 2.43
135 136 1.373536 GGGGAGAGGAGGGAAAGTTT 58.626 55.000 0.00 0.00 0.00 2.66
136 137 0.196118 TGGGGAGAGGAGGGAAAGTT 59.804 55.000 0.00 0.00 0.00 2.66
137 138 0.196118 TTGGGGAGAGGAGGGAAAGT 59.804 55.000 0.00 0.00 0.00 2.66
138 139 0.915364 CTTGGGGAGAGGAGGGAAAG 59.085 60.000 0.00 0.00 0.00 2.62
139 140 1.208165 GCTTGGGGAGAGGAGGGAAA 61.208 60.000 0.00 0.00 0.00 3.13
140 141 1.616628 GCTTGGGGAGAGGAGGGAA 60.617 63.158 0.00 0.00 0.00 3.97
141 142 2.041265 GCTTGGGGAGAGGAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
142 143 3.093172 GGCTTGGGGAGAGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
143 144 3.093172 GGGCTTGGGGAGAGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
144 145 2.285668 TGGGCTTGGGGAGAGGAG 60.286 66.667 0.00 0.00 0.00 3.69
145 146 2.285668 CTGGGCTTGGGGAGAGGA 60.286 66.667 0.00 0.00 0.00 3.71
146 147 1.500783 TTTCTGGGCTTGGGGAGAGG 61.501 60.000 0.00 0.00 0.00 3.69
147 148 0.322906 GTTTCTGGGCTTGGGGAGAG 60.323 60.000 0.00 0.00 0.00 3.20
177 178 3.677648 ACCGACGGACCGACCAAG 61.678 66.667 23.38 7.49 38.90 3.61
178 179 3.980989 CACCGACGGACCGACCAA 61.981 66.667 23.38 0.00 38.90 3.67
181 182 4.712425 CACCACCGACGGACCGAC 62.712 72.222 23.38 14.37 0.00 4.79
183 184 4.712425 GACACCACCGACGGACCG 62.712 72.222 23.38 13.61 0.00 4.79
184 185 3.278592 GAGACACCACCGACGGACC 62.279 68.421 23.38 2.54 0.00 4.46
185 186 2.257676 GAGACACCACCGACGGAC 59.742 66.667 23.38 4.54 0.00 4.79
186 187 2.987547 GGAGACACCACCGACGGA 60.988 66.667 23.38 0.00 38.79 4.69
187 188 4.065281 GGGAGACACCACCGACGG 62.065 72.222 13.61 13.61 41.20 4.79
195 196 3.282374 ATTTGGGCCGGGAGACACC 62.282 63.158 2.18 0.00 38.08 4.16
196 197 1.749258 GATTTGGGCCGGGAGACAC 60.749 63.158 2.18 0.00 0.00 3.67
197 198 2.674754 GATTTGGGCCGGGAGACA 59.325 61.111 2.18 0.00 0.00 3.41
198 199 2.124278 GGATTTGGGCCGGGAGAC 60.124 66.667 2.18 0.00 0.00 3.36
199 200 2.612430 TGGATTTGGGCCGGGAGA 60.612 61.111 2.18 0.00 0.00 3.71
200 201 2.124151 CTGGATTTGGGCCGGGAG 60.124 66.667 2.18 0.00 0.00 4.30
201 202 4.440829 GCTGGATTTGGGCCGGGA 62.441 66.667 2.18 0.00 32.24 5.14
205 206 2.041612 ATGGGCTGGATTTGGGCC 60.042 61.111 0.00 0.00 46.56 5.80
224 225 5.757099 TTTAAAGTAGGAGAGGAGGGTTG 57.243 43.478 0.00 0.00 0.00 3.77
227 228 5.046807 TCGTTTTTAAAGTAGGAGAGGAGGG 60.047 44.000 0.00 0.00 0.00 4.30
228 229 6.034161 TCGTTTTTAAAGTAGGAGAGGAGG 57.966 41.667 0.00 0.00 0.00 4.30
229 230 6.091034 GCTTCGTTTTTAAAGTAGGAGAGGAG 59.909 42.308 0.00 0.00 0.00 3.69
230 231 5.930569 GCTTCGTTTTTAAAGTAGGAGAGGA 59.069 40.000 0.00 0.00 0.00 3.71
231 232 5.699458 TGCTTCGTTTTTAAAGTAGGAGAGG 59.301 40.000 0.00 0.00 0.00 3.69
277 296 3.345414 GTGGAGGAGAAGAGAAGACGTA 58.655 50.000 0.00 0.00 0.00 3.57
278 297 2.164338 GTGGAGGAGAAGAGAAGACGT 58.836 52.381 0.00 0.00 0.00 4.34
279 298 1.474879 GGTGGAGGAGAAGAGAAGACG 59.525 57.143 0.00 0.00 0.00 4.18
280 299 1.474879 CGGTGGAGGAGAAGAGAAGAC 59.525 57.143 0.00 0.00 0.00 3.01
358 377 4.829968 CCAATACATATCTCAGCAGGAGG 58.170 47.826 5.68 0.00 44.19 4.30
398 505 0.036010 CATCACGCCTCCTGGAAACT 60.036 55.000 0.00 0.00 34.57 2.66
698 828 1.750399 CCATGGGGGCGAAGTTCAG 60.750 63.158 2.85 0.00 0.00 3.02
712 842 1.596260 CTCGATGTAGCAGTTGCCATG 59.404 52.381 0.00 0.00 43.38 3.66
722 876 4.569761 TTACAGTGATCCTCGATGTAGC 57.430 45.455 0.00 0.00 0.00 3.58
767 921 4.750952 ACGTAGTGATCATCGATGTAGG 57.249 45.455 24.09 15.82 42.51 3.18
790 944 1.449601 ATCGCGTGGCAGGGTTAAG 60.450 57.895 5.77 0.00 0.00 1.85
817 971 0.621571 TCCAGGCATAAGGGCAGAGT 60.622 55.000 0.00 0.00 46.44 3.24
925 1098 2.817258 TCATCTTTACCCCAACGCAAAG 59.183 45.455 0.00 0.00 0.00 2.77
990 1193 8.504815 CCTTGAAGAGAATACATGCAAGATATG 58.495 37.037 0.00 0.00 34.71 1.78
1055 1258 0.957395 CAACTGTTCCTGCGGCATCT 60.957 55.000 1.75 0.00 0.00 2.90
1150 1359 8.732746 GGTATGTACCTCATAACAAAATCACT 57.267 34.615 1.92 0.00 43.87 3.41
1412 1642 0.037326 TCACACGATTCAGTGAGGGC 60.037 55.000 13.15 0.00 44.43 5.19
1537 1773 9.613428 TTGATATTTGGTAGATGAGAACGAAAT 57.387 29.630 0.00 0.00 37.63 2.17
1728 2038 5.315195 CAAACGCCATTGCATTCAATTTAC 58.685 37.500 0.00 0.00 40.74 2.01
1946 2266 7.961325 ATCCAAACAAAAACAACACATATCC 57.039 32.000 0.00 0.00 0.00 2.59
2016 2341 7.201652 GGAGCTACTTGATAACAAAATGGAGTC 60.202 40.741 0.00 0.00 35.49 3.36
2162 2500 3.178046 TCTATGCAACTCCTGTAACCCA 58.822 45.455 0.00 0.00 0.00 4.51
2220 2559 1.028330 CGCCTCATGCATGAACCTGT 61.028 55.000 28.39 0.00 41.33 4.00
2346 2694 9.106070 ACGTTTTTACAGGTATGAAATAGATCC 57.894 33.333 0.00 0.00 0.00 3.36
2434 2784 3.119884 TGAAATAGCGGAGTGTGCAAATG 60.120 43.478 0.00 0.00 33.85 2.32
2473 2823 1.280133 TGGCTAGCAACAGCAGAAGAT 59.720 47.619 18.24 0.00 43.67 2.40
2480 2830 1.079503 GTGTACTGGCTAGCAACAGC 58.920 55.000 18.24 4.59 41.02 4.40
2482 2832 1.348064 AGGTGTACTGGCTAGCAACA 58.652 50.000 18.24 11.75 0.00 3.33
2522 2872 5.688807 CAGAGGGAGAAATCAATGGTGTAT 58.311 41.667 0.00 0.00 0.00 2.29
2529 2879 3.011032 ACAAGGCAGAGGGAGAAATCAAT 59.989 43.478 0.00 0.00 0.00 2.57
2632 2984 6.139671 TCTTTATAGGGTGATGAGAAGCTCT 58.860 40.000 0.00 0.00 0.00 4.09
2698 3050 4.591321 AATTCCACAAAGGCCTCTGATA 57.409 40.909 14.57 0.00 37.29 2.15
2712 3064 8.613060 TTCTATCATCATCAGCTAAATTCCAC 57.387 34.615 0.00 0.00 0.00 4.02
2777 3129 2.963101 TCCTCACCGTTTTCTCTCTTCA 59.037 45.455 0.00 0.00 0.00 3.02
2779 3131 2.300437 CCTCCTCACCGTTTTCTCTCTT 59.700 50.000 0.00 0.00 0.00 2.85
2810 3162 3.707102 AGCTACTGGTCTATCAGGAAACC 59.293 47.826 0.00 0.00 38.98 3.27
2818 3170 7.212976 TCATTTGATCAAGCTACTGGTCTATC 58.787 38.462 8.41 0.00 0.00 2.08
2823 3175 5.188555 TCTCTCATTTGATCAAGCTACTGGT 59.811 40.000 8.41 0.00 0.00 4.00
2824 3176 5.668471 TCTCTCATTTGATCAAGCTACTGG 58.332 41.667 8.41 0.00 0.00 4.00
2825 3177 6.817641 ACTTCTCTCATTTGATCAAGCTACTG 59.182 38.462 8.41 3.50 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.