Multiple sequence alignment - TraesCS3A01G046800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G046800 chr3A 100.000 2697 0 0 1 2697 24879157 24876461 0.000000e+00 4981
1 TraesCS3A01G046800 chr3D 84.550 1411 95 53 354 1711 12281146 12282486 0.000000e+00 1284
2 TraesCS3A01G046800 chr3D 88.291 316 35 2 2145 2460 5763284 5762971 7.050000e-101 377
3 TraesCS3A01G046800 chr3D 91.457 199 12 1 1953 2146 12282825 12283023 4.430000e-68 268
4 TraesCS3A01G046800 chr3D 91.975 162 11 1 2453 2614 12283019 12283178 2.700000e-55 226
5 TraesCS3A01G046800 chr3B 84.024 1158 88 41 595 1708 17624548 17625652 0.000000e+00 1024
6 TraesCS3A01G046800 chr3B 92.955 440 26 3 165 599 17623855 17624294 1.050000e-178 636
7 TraesCS3A01G046800 chr3B 89.906 426 21 6 1738 2145 17625653 17626074 1.840000e-146 529
8 TraesCS3A01G046800 chr3B 90.083 242 20 3 2453 2694 17626071 17626308 7.250000e-81 311
9 TraesCS3A01G046800 chr3B 93.252 163 11 0 1 163 17623371 17623533 9.650000e-60 241
10 TraesCS3A01G046800 chr3B 79.167 288 50 10 350 631 17638325 17638608 9.860000e-45 191
11 TraesCS3A01G046800 chr3B 81.481 216 32 7 1 210 17638065 17638278 1.280000e-38 171
12 TraesCS3A01G046800 chrUn 89.623 318 31 1 2142 2459 127005085 127004770 1.160000e-108 403
13 TraesCS3A01G046800 chr7D 90.000 310 30 1 2145 2454 452714237 452713929 1.500000e-107 399
14 TraesCS3A01G046800 chr7D 89.032 310 33 1 2145 2454 111729331 111729023 1.510000e-102 383
15 TraesCS3A01G046800 chr1D 89.809 314 29 2 2143 2456 356221497 356221807 1.500000e-107 399
16 TraesCS3A01G046800 chr4D 89.206 315 32 1 2142 2456 65916781 65916469 2.520000e-105 392
17 TraesCS3A01G046800 chr2D 89.355 310 31 2 2145 2454 558721138 558721445 3.260000e-104 388
18 TraesCS3A01G046800 chr5A 88.125 320 34 4 2142 2459 528378477 528378160 7.050000e-101 377
19 TraesCS3A01G046800 chr7B 88.088 319 34 3 2142 2459 19892451 19892136 2.540000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G046800 chr3A 24876461 24879157 2696 True 4981.000000 4981 100.000000 1 2697 1 chr3A.!!$R1 2696
1 TraesCS3A01G046800 chr3D 12281146 12283178 2032 False 592.666667 1284 89.327333 354 2614 3 chr3D.!!$F1 2260
2 TraesCS3A01G046800 chr3B 17623371 17626308 2937 False 548.200000 1024 90.044000 1 2694 5 chr3B.!!$F1 2693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1662 0.108615 CAAGCTAGCACGTACCAGCT 60.109 55.0 18.83 2.6 46.05 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 3133 0.026285 ATTGTGAAGCGCGCGTAATC 59.974 50.0 32.35 24.93 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.153117 CAGAGATTCTCAAACAGGAAACCG 59.847 45.833 15.83 0.00 32.06 4.44
56 57 4.204012 TCTCAAACAGGAAACCGAATTGT 58.796 39.130 0.00 0.00 0.00 2.71
60 61 1.880027 ACAGGAAACCGAATTGTCTGC 59.120 47.619 0.00 0.00 0.00 4.26
66 67 5.992217 AGGAAACCGAATTGTCTGCTATATC 59.008 40.000 0.00 0.00 0.00 1.63
75 76 5.644977 TTGTCTGCTATATCAGGGATACG 57.355 43.478 3.84 0.00 34.91 3.06
159 160 6.773685 TGGTGTTTTAGTACTTGGCACTTTAT 59.226 34.615 0.00 0.00 0.00 1.40
169 170 9.961265 AGTACTTGGCACTTTATTTTTCTTTAC 57.039 29.630 0.00 0.00 0.00 2.01
170 171 9.961265 GTACTTGGCACTTTATTTTTCTTTACT 57.039 29.630 0.00 0.00 0.00 2.24
294 616 1.479323 CCTCCGTCCGGATTTAGTTGA 59.521 52.381 7.81 0.00 44.24 3.18
299 621 2.733026 CGTCCGGATTTAGTTGACGTTT 59.267 45.455 7.81 0.00 42.68 3.60
301 623 4.030977 CGTCCGGATTTAGTTGACGTTTAG 59.969 45.833 7.81 0.00 42.68 1.85
342 664 1.795768 TCATCCGTTTGAGTGTCAGC 58.204 50.000 0.00 0.00 0.00 4.26
343 665 0.798776 CATCCGTTTGAGTGTCAGCC 59.201 55.000 0.00 0.00 0.00 4.85
346 668 1.284982 CCGTTTGAGTGTCAGCCGAG 61.285 60.000 0.00 0.00 0.00 4.63
347 669 1.862806 GTTTGAGTGTCAGCCGAGC 59.137 57.895 0.00 0.00 0.00 5.03
348 670 0.880278 GTTTGAGTGTCAGCCGAGCA 60.880 55.000 0.00 0.00 0.00 4.26
352 674 0.235926 GAGTGTCAGCCGAGCAAAAC 59.764 55.000 0.00 0.00 0.00 2.43
576 903 6.618287 TCTCATATGTGGCCGAAAATAAAG 57.382 37.500 1.90 0.00 0.00 1.85
586 913 2.598192 CCGAAAATAAAGCGGCATTGTG 59.402 45.455 1.45 0.00 38.46 3.33
617 1202 9.755804 CACAGTACCAGATATTATAGGCATATG 57.244 37.037 0.05 0.00 0.00 1.78
619 1204 8.928448 CAGTACCAGATATTATAGGCATATGGT 58.072 37.037 4.56 2.02 44.32 3.55
697 1298 4.058721 CATGCATGCTACAGTAGTACCA 57.941 45.455 20.33 6.42 0.00 3.25
756 1357 2.685897 ACAAGCCGCAACTAACAAAAGA 59.314 40.909 0.00 0.00 0.00 2.52
922 1574 1.905215 CACACCTCATCTTCTCCACCT 59.095 52.381 0.00 0.00 0.00 4.00
924 1576 2.569404 ACACCTCATCTTCTCCACCTTC 59.431 50.000 0.00 0.00 0.00 3.46
980 1654 1.361668 AACCATCGCAAGCTAGCACG 61.362 55.000 18.83 17.16 37.18 5.34
983 1657 0.572590 CATCGCAAGCTAGCACGTAC 59.427 55.000 18.83 0.21 37.18 3.67
984 1658 0.527817 ATCGCAAGCTAGCACGTACC 60.528 55.000 18.83 0.00 37.18 3.34
985 1659 1.445410 CGCAAGCTAGCACGTACCA 60.445 57.895 18.83 0.00 0.00 3.25
986 1660 1.413767 CGCAAGCTAGCACGTACCAG 61.414 60.000 18.83 0.00 0.00 4.00
987 1661 1.696832 GCAAGCTAGCACGTACCAGC 61.697 60.000 18.83 0.00 0.00 4.85
988 1662 0.108615 CAAGCTAGCACGTACCAGCT 60.109 55.000 18.83 2.60 46.05 4.24
989 1663 1.134367 CAAGCTAGCACGTACCAGCTA 59.866 52.381 18.83 7.12 43.39 3.32
990 1664 0.739561 AGCTAGCACGTACCAGCTAC 59.260 55.000 18.83 2.83 42.41 3.58
991 1665 0.739561 GCTAGCACGTACCAGCTACT 59.260 55.000 10.63 0.00 42.05 2.57
992 1666 1.945394 GCTAGCACGTACCAGCTACTA 59.055 52.381 10.63 0.00 42.05 1.82
993 1667 2.031857 GCTAGCACGTACCAGCTACTAG 60.032 54.545 10.63 4.57 42.05 2.57
994 1668 0.739561 AGCACGTACCAGCTACTAGC 59.260 55.000 4.99 0.00 42.84 3.42
1105 1785 0.457509 CACAGAGCGCCTGACTACTG 60.458 60.000 26.07 16.08 45.78 2.74
1139 1822 1.516603 GGTCGCTGAAGCCGACTAC 60.517 63.158 19.28 7.19 41.11 2.73
1158 1841 1.108132 CGGCTACCAGGGGACTACTC 61.108 65.000 0.00 0.00 40.21 2.59
1256 1943 6.538021 CGGTATATATCTACGTGCCTAAGACT 59.462 42.308 0.00 0.00 0.00 3.24
1257 1944 7.254387 CGGTATATATCTACGTGCCTAAGACTC 60.254 44.444 0.00 0.00 0.00 3.36
1258 1945 7.551974 GGTATATATCTACGTGCCTAAGACTCA 59.448 40.741 0.00 0.00 0.00 3.41
1259 1946 9.111613 GTATATATCTACGTGCCTAAGACTCAT 57.888 37.037 0.00 0.00 0.00 2.90
1274 1961 6.788598 AAGACTCATGCATATATCGATCCT 57.211 37.500 0.00 0.00 0.00 3.24
1275 1962 7.888250 AAGACTCATGCATATATCGATCCTA 57.112 36.000 0.00 0.00 0.00 2.94
1276 1963 7.509141 AGACTCATGCATATATCGATCCTAG 57.491 40.000 0.00 0.00 0.00 3.02
1277 1964 6.016360 AGACTCATGCATATATCGATCCTAGC 60.016 42.308 0.00 3.42 0.00 3.42
1278 1965 5.832595 ACTCATGCATATATCGATCCTAGCT 59.167 40.000 0.00 0.00 0.00 3.32
1279 1966 7.001073 ACTCATGCATATATCGATCCTAGCTA 58.999 38.462 0.00 0.00 0.00 3.32
1280 1967 7.040755 ACTCATGCATATATCGATCCTAGCTAC 60.041 40.741 0.00 0.00 0.00 3.58
1322 2010 2.094752 TCTGCTGATGACGAATCACGAA 60.095 45.455 0.00 0.00 45.77 3.85
1492 2180 2.481969 GCTAGCCTCGTCACATGATCAA 60.482 50.000 2.29 0.00 0.00 2.57
1494 2182 1.009829 GCCTCGTCACATGATCAACC 58.990 55.000 0.00 0.00 0.00 3.77
1495 2183 1.675714 GCCTCGTCACATGATCAACCA 60.676 52.381 0.00 0.00 0.00 3.67
1496 2184 2.698803 CCTCGTCACATGATCAACCAA 58.301 47.619 0.00 0.00 0.00 3.67
1497 2185 2.416547 CCTCGTCACATGATCAACCAAC 59.583 50.000 0.00 0.00 0.00 3.77
1498 2186 3.066380 CTCGTCACATGATCAACCAACA 58.934 45.455 0.00 0.00 0.00 3.33
1499 2187 2.805671 TCGTCACATGATCAACCAACAC 59.194 45.455 0.00 0.00 0.00 3.32
1500 2188 2.547634 CGTCACATGATCAACCAACACA 59.452 45.455 0.00 0.00 0.00 3.72
1501 2189 3.003171 CGTCACATGATCAACCAACACAA 59.997 43.478 0.00 0.00 0.00 3.33
1502 2190 4.290155 GTCACATGATCAACCAACACAAC 58.710 43.478 0.00 0.00 0.00 3.32
1503 2191 3.317711 TCACATGATCAACCAACACAACC 59.682 43.478 0.00 0.00 0.00 3.77
1669 2357 1.298014 GAACCTGGAGCTCACCCTG 59.702 63.158 17.19 2.85 0.00 4.45
1679 2367 2.034532 TCACCCTGTCTACGCCGA 59.965 61.111 0.00 0.00 0.00 5.54
1708 2396 4.828829 CGTCTACTTAATTTGGAGGGTGT 58.171 43.478 0.00 0.00 0.00 4.16
1709 2397 4.868734 CGTCTACTTAATTTGGAGGGTGTC 59.131 45.833 0.00 0.00 0.00 3.67
1710 2398 5.568023 CGTCTACTTAATTTGGAGGGTGTCA 60.568 44.000 0.00 0.00 0.00 3.58
1711 2399 6.415573 GTCTACTTAATTTGGAGGGTGTCAT 58.584 40.000 0.00 0.00 0.00 3.06
1712 2400 7.562135 GTCTACTTAATTTGGAGGGTGTCATA 58.438 38.462 0.00 0.00 0.00 2.15
1713 2401 8.211629 GTCTACTTAATTTGGAGGGTGTCATAT 58.788 37.037 0.00 0.00 0.00 1.78
1714 2402 8.429641 TCTACTTAATTTGGAGGGTGTCATATC 58.570 37.037 0.00 0.00 0.00 1.63
1715 2403 6.969043 ACTTAATTTGGAGGGTGTCATATCA 58.031 36.000 0.00 0.00 0.00 2.15
1716 2404 7.586349 ACTTAATTTGGAGGGTGTCATATCAT 58.414 34.615 0.00 0.00 0.00 2.45
1717 2405 7.721399 ACTTAATTTGGAGGGTGTCATATCATC 59.279 37.037 0.00 0.00 0.00 2.92
1718 2406 3.751479 TTGGAGGGTGTCATATCATCG 57.249 47.619 0.00 0.00 0.00 3.84
1719 2407 1.970640 TGGAGGGTGTCATATCATCGG 59.029 52.381 0.00 0.00 0.00 4.18
1720 2408 1.971357 GGAGGGTGTCATATCATCGGT 59.029 52.381 0.00 0.00 0.00 4.69
1721 2409 2.368875 GGAGGGTGTCATATCATCGGTT 59.631 50.000 0.00 0.00 0.00 4.44
1722 2410 3.393800 GAGGGTGTCATATCATCGGTTG 58.606 50.000 0.00 0.00 0.00 3.77
1723 2411 3.038280 AGGGTGTCATATCATCGGTTGA 58.962 45.455 0.00 0.00 39.12 3.18
1724 2412 3.648067 AGGGTGTCATATCATCGGTTGAT 59.352 43.478 6.77 6.77 46.86 2.57
1725 2413 3.997021 GGGTGTCATATCATCGGTTGATC 59.003 47.826 4.89 0.00 44.13 2.92
1726 2414 3.675225 GGTGTCATATCATCGGTTGATCG 59.325 47.826 4.89 0.00 44.13 3.69
1727 2415 3.675225 GTGTCATATCATCGGTTGATCGG 59.325 47.826 4.89 0.45 44.13 4.18
1728 2416 3.320826 TGTCATATCATCGGTTGATCGGT 59.679 43.478 4.89 0.00 44.13 4.69
1729 2417 4.521256 TGTCATATCATCGGTTGATCGGTA 59.479 41.667 4.89 0.00 44.13 4.02
1730 2418 5.010213 TGTCATATCATCGGTTGATCGGTAA 59.990 40.000 4.89 0.00 44.13 2.85
1745 2433 4.829872 TCGGTAATCACCTGGTGTTTAT 57.170 40.909 25.23 12.28 43.33 1.40
1794 2482 3.079578 TGTACCGTAAGAGACAGTCCTG 58.920 50.000 0.00 0.00 43.02 3.86
1807 2547 8.001881 AGAGACAGTCCTGTTATTGTACTATG 57.998 38.462 0.79 0.00 45.05 2.23
1808 2548 6.574350 AGACAGTCCTGTTATTGTACTATGC 58.426 40.000 0.79 0.00 45.05 3.14
1850 2612 9.073368 CCTACTATATATGTATGACGCACAAAC 57.927 37.037 0.00 0.00 0.00 2.93
1883 2645 5.539574 ACAAGTTTGAATTGATCCCATCACA 59.460 36.000 0.00 0.00 39.39 3.58
1899 2708 4.511527 CATCACAGCCAGTTCATTACTCT 58.488 43.478 0.00 0.00 33.85 3.24
1912 2721 9.713740 CAGTTCATTACTCTTCATTTAATGCTC 57.286 33.333 0.00 0.00 33.85 4.26
1913 2722 9.453572 AGTTCATTACTCTTCATTTAATGCTCA 57.546 29.630 0.00 0.00 34.51 4.26
2154 2992 2.971307 GCCATAGCTTAGAGCATCTCC 58.029 52.381 0.00 0.00 45.56 3.71
2155 2993 2.301296 GCCATAGCTTAGAGCATCTCCA 59.699 50.000 0.00 0.00 45.56 3.86
2156 2994 3.244353 GCCATAGCTTAGAGCATCTCCAA 60.244 47.826 0.00 0.00 45.56 3.53
2157 2995 5.333019 GCCATAGCTTAGAGCATCTCCAAC 61.333 50.000 0.00 0.00 45.56 3.77
2158 2996 7.707880 GCCATAGCTTAGAGCATCTCCAACA 62.708 48.000 0.00 0.00 45.56 3.33
2162 3000 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
2163 3001 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
2164 3002 3.512516 GCATCTCCAACAGGCGCC 61.513 66.667 21.89 21.89 0.00 6.53
2165 3003 2.825836 CATCTCCAACAGGCGCCC 60.826 66.667 26.15 5.07 0.00 6.13
2166 3004 3.329889 ATCTCCAACAGGCGCCCA 61.330 61.111 26.15 0.00 0.00 5.36
2167 3005 2.905996 ATCTCCAACAGGCGCCCAA 61.906 57.895 26.15 0.88 0.00 4.12
2168 3006 2.424842 ATCTCCAACAGGCGCCCAAA 62.425 55.000 26.15 1.70 0.00 3.28
2169 3007 2.123683 TCCAACAGGCGCCCAAAA 60.124 55.556 26.15 0.41 0.00 2.44
2170 3008 1.743321 CTCCAACAGGCGCCCAAAAA 61.743 55.000 26.15 3.57 0.00 1.94
2186 3024 3.618171 AAAAAGCTCCGCGGACTAA 57.382 47.368 27.28 3.27 0.00 2.24
2187 3025 1.886886 AAAAAGCTCCGCGGACTAAA 58.113 45.000 27.28 2.79 0.00 1.85
2188 3026 1.886886 AAAAGCTCCGCGGACTAAAA 58.113 45.000 27.28 1.86 0.00 1.52
2189 3027 1.886886 AAAGCTCCGCGGACTAAAAA 58.113 45.000 27.28 0.94 0.00 1.94
2190 3028 2.109425 AAGCTCCGCGGACTAAAAAT 57.891 45.000 27.28 8.29 0.00 1.82
2191 3029 2.109425 AGCTCCGCGGACTAAAAATT 57.891 45.000 27.28 0.20 0.00 1.82
2192 3030 3.255969 AGCTCCGCGGACTAAAAATTA 57.744 42.857 27.28 0.00 0.00 1.40
2193 3031 3.195661 AGCTCCGCGGACTAAAAATTAG 58.804 45.455 27.28 11.80 0.00 1.73
2194 3032 2.934553 GCTCCGCGGACTAAAAATTAGT 59.065 45.455 27.28 2.56 0.00 2.24
2195 3033 3.373130 GCTCCGCGGACTAAAAATTAGTT 59.627 43.478 27.28 0.00 0.00 2.24
2196 3034 4.142752 GCTCCGCGGACTAAAAATTAGTTT 60.143 41.667 27.28 0.00 0.00 2.66
2197 3035 5.618418 GCTCCGCGGACTAAAAATTAGTTTT 60.618 40.000 27.28 0.00 42.24 2.43
2198 3036 6.316440 TCCGCGGACTAAAAATTAGTTTTT 57.684 33.333 27.28 12.58 46.33 1.94
2218 3056 2.197324 TGGGTGCCCAACAACTCC 59.803 61.111 7.63 0.00 44.12 3.85
2219 3057 2.197324 GGGTGCCCAACAACTCCA 59.803 61.111 1.66 0.00 35.72 3.86
2220 3058 1.903404 GGGTGCCCAACAACTCCAG 60.903 63.158 1.66 0.00 35.72 3.86
2221 3059 2.564721 GGTGCCCAACAACTCCAGC 61.565 63.158 0.00 0.00 31.12 4.85
2222 3060 1.827789 GTGCCCAACAACTCCAGCA 60.828 57.895 0.00 0.00 0.00 4.41
2223 3061 1.529010 TGCCCAACAACTCCAGCAG 60.529 57.895 0.00 0.00 0.00 4.24
2224 3062 1.228245 GCCCAACAACTCCAGCAGA 60.228 57.895 0.00 0.00 0.00 4.26
2225 3063 0.610232 GCCCAACAACTCCAGCAGAT 60.610 55.000 0.00 0.00 0.00 2.90
2226 3064 1.171308 CCCAACAACTCCAGCAGATG 58.829 55.000 0.00 0.00 0.00 2.90
2227 3065 1.546323 CCCAACAACTCCAGCAGATGT 60.546 52.381 0.00 0.00 39.76 3.06
2228 3066 2.233271 CCAACAACTCCAGCAGATGTT 58.767 47.619 0.00 0.00 46.29 2.71
2229 3067 3.411446 CCAACAACTCCAGCAGATGTTA 58.589 45.455 0.00 0.00 44.19 2.41
2230 3068 4.012374 CCAACAACTCCAGCAGATGTTAT 58.988 43.478 0.00 0.00 44.19 1.89
2231 3069 5.185454 CCAACAACTCCAGCAGATGTTATA 58.815 41.667 0.00 0.00 44.19 0.98
2232 3070 5.295292 CCAACAACTCCAGCAGATGTTATAG 59.705 44.000 0.00 0.00 44.19 1.31
2233 3071 4.446371 ACAACTCCAGCAGATGTTATAGC 58.554 43.478 0.00 0.00 34.53 2.97
2234 3072 3.377346 ACTCCAGCAGATGTTATAGCG 57.623 47.619 0.00 0.00 0.00 4.26
2235 3073 2.064762 CTCCAGCAGATGTTATAGCGC 58.935 52.381 0.00 0.00 0.00 5.92
2236 3074 1.688735 TCCAGCAGATGTTATAGCGCT 59.311 47.619 17.26 17.26 0.00 5.92
2237 3075 2.890945 TCCAGCAGATGTTATAGCGCTA 59.109 45.455 21.30 21.30 0.00 4.26
2238 3076 3.320826 TCCAGCAGATGTTATAGCGCTAA 59.679 43.478 22.98 4.55 0.00 3.09
2239 3077 4.058124 CCAGCAGATGTTATAGCGCTAAA 58.942 43.478 22.98 13.83 0.00 1.85
2240 3078 4.511454 CCAGCAGATGTTATAGCGCTAAAA 59.489 41.667 22.98 10.10 0.00 1.52
2241 3079 5.007626 CCAGCAGATGTTATAGCGCTAAAAA 59.992 40.000 22.98 15.77 0.00 1.94
2242 3080 5.904080 CAGCAGATGTTATAGCGCTAAAAAC 59.096 40.000 26.85 26.85 0.00 2.43
2243 3081 5.817816 AGCAGATGTTATAGCGCTAAAAACT 59.182 36.000 30.27 21.62 0.00 2.66
2244 3082 6.316390 AGCAGATGTTATAGCGCTAAAAACTT 59.684 34.615 30.27 26.72 0.00 2.66
2245 3083 6.967199 GCAGATGTTATAGCGCTAAAAACTTT 59.033 34.615 30.27 22.77 0.00 2.66
2246 3084 7.484959 GCAGATGTTATAGCGCTAAAAACTTTT 59.515 33.333 30.27 22.19 0.00 2.27
2247 3085 8.788813 CAGATGTTATAGCGCTAAAAACTTTTG 58.211 33.333 30.27 26.23 0.00 2.44
2248 3086 7.968405 AGATGTTATAGCGCTAAAAACTTTTGG 59.032 33.333 30.27 0.00 0.00 3.28
2249 3087 6.383415 TGTTATAGCGCTAAAAACTTTTGGG 58.617 36.000 30.27 0.00 0.00 4.12
2250 3088 2.148916 AGCGCTAAAAACTTTTGGGC 57.851 45.000 8.99 12.33 37.38 5.36
2251 3089 0.781787 GCGCTAAAAACTTTTGGGCG 59.218 50.000 21.46 21.46 46.09 6.13
2252 3090 0.781787 CGCTAAAAACTTTTGGGCGC 59.218 50.000 17.30 0.00 42.00 6.53
2253 3091 0.781787 GCTAAAAACTTTTGGGCGCG 59.218 50.000 0.00 0.00 0.00 6.86
2254 3092 0.781787 CTAAAAACTTTTGGGCGCGC 59.218 50.000 25.94 25.94 0.00 6.86
2255 3093 0.935366 TAAAAACTTTTGGGCGCGCG 60.935 50.000 28.44 28.44 0.00 6.86
2266 3104 4.182206 GCGCGCGCTGAAAAATGC 62.182 61.111 44.38 18.46 38.26 3.56
2267 3105 2.502510 CGCGCGCTGAAAAATGCT 60.503 55.556 30.48 0.00 0.00 3.79
2268 3106 1.225991 CGCGCGCTGAAAAATGCTA 60.226 52.632 30.48 0.00 0.00 3.49
2269 3107 0.589729 CGCGCGCTGAAAAATGCTAT 60.590 50.000 30.48 0.00 0.00 2.97
2270 3108 1.115639 GCGCGCTGAAAAATGCTATC 58.884 50.000 26.67 0.00 0.00 2.08
2271 3109 1.379299 CGCGCTGAAAAATGCTATCG 58.621 50.000 5.56 0.00 0.00 2.92
2272 3110 1.115639 GCGCTGAAAAATGCTATCGC 58.884 50.000 0.00 0.00 34.61 4.58
2273 3111 1.379299 CGCTGAAAAATGCTATCGCG 58.621 50.000 0.00 0.00 39.65 5.87
2274 3112 1.115639 GCTGAAAAATGCTATCGCGC 58.884 50.000 0.00 0.00 39.65 6.86
2275 3113 1.379299 CTGAAAAATGCTATCGCGCG 58.621 50.000 26.76 26.76 39.65 6.86
2276 3114 0.588730 TGAAAAATGCTATCGCGCGC 60.589 50.000 27.95 23.91 39.65 6.86
2277 3115 0.588730 GAAAAATGCTATCGCGCGCA 60.589 50.000 32.61 18.27 40.87 6.09
2278 3116 0.589729 AAAAATGCTATCGCGCGCAG 60.590 50.000 32.61 24.39 39.82 5.18
2292 3130 3.557207 CGCAGCATATTTTGGGCTC 57.443 52.632 0.00 0.00 35.27 4.70
2293 3131 0.031178 CGCAGCATATTTTGGGCTCC 59.969 55.000 0.00 0.00 35.27 4.70
2294 3132 1.113788 GCAGCATATTTTGGGCTCCA 58.886 50.000 0.00 0.00 35.27 3.86
2295 3133 1.068127 GCAGCATATTTTGGGCTCCAG 59.932 52.381 0.00 0.00 35.27 3.86
2296 3134 2.658285 CAGCATATTTTGGGCTCCAGA 58.342 47.619 0.00 0.00 35.27 3.86
2297 3135 3.228453 CAGCATATTTTGGGCTCCAGAT 58.772 45.455 0.00 0.00 35.27 2.90
2298 3136 3.640029 CAGCATATTTTGGGCTCCAGATT 59.360 43.478 0.00 0.00 35.27 2.40
2299 3137 4.828939 CAGCATATTTTGGGCTCCAGATTA 59.171 41.667 0.00 0.00 35.27 1.75
2300 3138 4.829492 AGCATATTTTGGGCTCCAGATTAC 59.171 41.667 0.00 0.00 33.81 1.89
2301 3139 4.320494 GCATATTTTGGGCTCCAGATTACG 60.320 45.833 0.00 0.00 33.81 3.18
2302 3140 1.459450 TTTTGGGCTCCAGATTACGC 58.541 50.000 0.00 0.00 33.81 4.42
2303 3141 0.742990 TTTGGGCTCCAGATTACGCG 60.743 55.000 3.53 3.53 33.81 6.01
2304 3142 2.967615 GGGCTCCAGATTACGCGC 60.968 66.667 5.73 0.00 0.00 6.86
2305 3143 3.330853 GGCTCCAGATTACGCGCG 61.331 66.667 30.96 30.96 0.00 6.86
2306 3144 3.989595 GCTCCAGATTACGCGCGC 61.990 66.667 32.58 23.91 0.00 6.86
2307 3145 2.278857 CTCCAGATTACGCGCGCT 60.279 61.111 32.58 19.60 0.00 5.92
2308 3146 1.878522 CTCCAGATTACGCGCGCTT 60.879 57.895 32.58 23.63 0.00 4.68
2309 3147 1.812214 CTCCAGATTACGCGCGCTTC 61.812 60.000 32.58 23.17 0.00 3.86
2310 3148 2.164663 CCAGATTACGCGCGCTTCA 61.165 57.895 32.58 12.46 0.00 3.02
2311 3149 1.013323 CAGATTACGCGCGCTTCAC 60.013 57.895 32.58 17.47 0.00 3.18
2312 3150 1.445410 AGATTACGCGCGCTTCACA 60.445 52.632 32.58 8.06 0.00 3.58
2313 3151 1.011968 AGATTACGCGCGCTTCACAA 61.012 50.000 32.58 11.84 0.00 3.33
2314 3152 0.026285 GATTACGCGCGCTTCACAAT 59.974 50.000 32.58 16.41 0.00 2.71
2315 3153 0.446222 ATTACGCGCGCTTCACAATT 59.554 45.000 32.58 9.66 0.00 2.32
2316 3154 0.236187 TTACGCGCGCTTCACAATTT 59.764 45.000 32.58 8.80 0.00 1.82
2317 3155 0.451957 TACGCGCGCTTCACAATTTG 60.452 50.000 32.58 11.74 0.00 2.32
2318 3156 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
2319 3157 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
2320 3158 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
2321 3159 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
2322 3160 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
2323 3161 1.865248 GCGCTTCACAATTTGCACTGT 60.865 47.619 0.00 0.00 0.00 3.55
2324 3162 2.604373 GCGCTTCACAATTTGCACTGTA 60.604 45.455 0.00 0.00 0.00 2.74
2325 3163 3.825308 CGCTTCACAATTTGCACTGTAT 58.175 40.909 0.00 0.00 0.00 2.29
2326 3164 3.605056 CGCTTCACAATTTGCACTGTATG 59.395 43.478 0.00 0.00 0.00 2.39
2339 3177 3.659735 CACTGTATGCTTTTTAGACGCG 58.340 45.455 3.53 3.53 0.00 6.01
2340 3178 2.093783 ACTGTATGCTTTTTAGACGCGC 59.906 45.455 5.73 0.00 0.00 6.86
2341 3179 2.070028 TGTATGCTTTTTAGACGCGCA 58.930 42.857 5.73 0.00 34.83 6.09
2342 3180 2.675844 TGTATGCTTTTTAGACGCGCAT 59.324 40.909 5.73 0.00 43.11 4.73
2343 3181 2.919666 ATGCTTTTTAGACGCGCATT 57.080 40.000 5.73 0.00 38.04 3.56
2344 3182 2.697431 TGCTTTTTAGACGCGCATTT 57.303 40.000 5.73 0.00 0.00 2.32
2345 3183 3.006659 TGCTTTTTAGACGCGCATTTT 57.993 38.095 5.73 0.00 0.00 1.82
2346 3184 3.376540 TGCTTTTTAGACGCGCATTTTT 58.623 36.364 5.73 0.00 0.00 1.94
2347 3185 4.537965 TGCTTTTTAGACGCGCATTTTTA 58.462 34.783 5.73 0.00 0.00 1.52
2348 3186 4.615121 TGCTTTTTAGACGCGCATTTTTAG 59.385 37.500 5.73 0.00 0.00 1.85
2349 3187 4.030195 GCTTTTTAGACGCGCATTTTTAGG 59.970 41.667 5.73 0.00 0.00 2.69
2350 3188 2.817538 TTAGACGCGCATTTTTAGGC 57.182 45.000 5.73 0.00 0.00 3.93
2362 3200 6.255884 GCATTTTTAGGCGTATGTTAAAGC 57.744 37.500 0.00 0.00 0.00 3.51
2363 3201 5.802956 GCATTTTTAGGCGTATGTTAAAGCA 59.197 36.000 0.00 0.00 0.00 3.91
2364 3202 6.309251 GCATTTTTAGGCGTATGTTAAAGCAA 59.691 34.615 0.00 0.00 0.00 3.91
2365 3203 7.010091 GCATTTTTAGGCGTATGTTAAAGCAAT 59.990 33.333 0.00 0.00 0.00 3.56
2366 3204 7.804614 TTTTTAGGCGTATGTTAAAGCAATG 57.195 32.000 0.00 0.00 0.00 2.82
2367 3205 6.503589 TTTAGGCGTATGTTAAAGCAATGT 57.496 33.333 0.00 0.00 0.00 2.71
2368 3206 6.503589 TTAGGCGTATGTTAAAGCAATGTT 57.496 33.333 0.00 0.00 0.00 2.71
2369 3207 4.732784 AGGCGTATGTTAAAGCAATGTTG 58.267 39.130 0.00 0.00 0.00 3.33
2370 3208 3.857093 GGCGTATGTTAAAGCAATGTTGG 59.143 43.478 0.00 0.00 0.00 3.77
2371 3209 4.481463 GCGTATGTTAAAGCAATGTTGGT 58.519 39.130 0.00 0.00 41.27 3.67
2372 3210 4.557301 GCGTATGTTAAAGCAATGTTGGTC 59.443 41.667 0.00 0.00 38.04 4.02
2373 3211 5.092781 CGTATGTTAAAGCAATGTTGGTCC 58.907 41.667 0.00 0.00 38.04 4.46
2374 3212 4.535526 ATGTTAAAGCAATGTTGGTCCC 57.464 40.909 0.00 0.00 38.04 4.46
2375 3213 2.294791 TGTTAAAGCAATGTTGGTCCCG 59.705 45.455 0.00 0.00 38.04 5.14
2376 3214 1.540267 TAAAGCAATGTTGGTCCCGG 58.460 50.000 0.00 0.00 38.04 5.73
2377 3215 1.815817 AAAGCAATGTTGGTCCCGGC 61.816 55.000 0.00 0.00 38.04 6.13
2378 3216 2.988684 GCAATGTTGGTCCCGGCA 60.989 61.111 0.00 0.00 0.00 5.69
2379 3217 2.961768 CAATGTTGGTCCCGGCAC 59.038 61.111 0.00 0.00 0.00 5.01
2380 3218 1.900981 CAATGTTGGTCCCGGCACA 60.901 57.895 0.00 0.00 0.00 4.57
2381 3219 1.901464 AATGTTGGTCCCGGCACAC 60.901 57.895 0.00 0.00 0.00 3.82
2382 3220 2.351924 AATGTTGGTCCCGGCACACT 62.352 55.000 0.00 0.00 0.00 3.55
2383 3221 1.485294 ATGTTGGTCCCGGCACACTA 61.485 55.000 0.00 0.00 0.00 2.74
2384 3222 1.071814 GTTGGTCCCGGCACACTAA 59.928 57.895 0.00 0.00 0.00 2.24
2385 3223 0.535553 GTTGGTCCCGGCACACTAAA 60.536 55.000 0.00 0.00 0.00 1.85
2386 3224 0.183014 TTGGTCCCGGCACACTAAAA 59.817 50.000 0.00 0.00 0.00 1.52
2387 3225 0.250553 TGGTCCCGGCACACTAAAAG 60.251 55.000 0.00 0.00 0.00 2.27
2388 3226 0.250597 GGTCCCGGCACACTAAAAGT 60.251 55.000 0.00 0.00 0.00 2.66
2400 3238 3.810373 CACTAAAAGTGCTAAAGTGGCG 58.190 45.455 0.00 0.00 39.62 5.69
2401 3239 3.250040 CACTAAAAGTGCTAAAGTGGCGT 59.750 43.478 0.00 0.00 39.62 5.68
2402 3240 2.774439 AAAAGTGCTAAAGTGGCGTG 57.226 45.000 0.00 0.00 0.00 5.34
2403 3241 0.310854 AAAGTGCTAAAGTGGCGTGC 59.689 50.000 0.00 0.00 0.00 5.34
2404 3242 0.535102 AAGTGCTAAAGTGGCGTGCT 60.535 50.000 0.00 0.00 0.00 4.40
2405 3243 0.320374 AGTGCTAAAGTGGCGTGCTA 59.680 50.000 0.00 0.00 0.00 3.49
2406 3244 1.066143 AGTGCTAAAGTGGCGTGCTAT 60.066 47.619 0.00 0.00 0.00 2.97
2407 3245 2.167693 AGTGCTAAAGTGGCGTGCTATA 59.832 45.455 0.00 0.00 0.00 1.31
2408 3246 2.933906 GTGCTAAAGTGGCGTGCTATAA 59.066 45.455 0.00 0.00 0.00 0.98
2409 3247 3.560068 GTGCTAAAGTGGCGTGCTATAAT 59.440 43.478 0.00 0.00 0.00 1.28
2410 3248 4.035208 GTGCTAAAGTGGCGTGCTATAATT 59.965 41.667 0.00 0.00 0.00 1.40
2411 3249 4.638421 TGCTAAAGTGGCGTGCTATAATTT 59.362 37.500 0.00 0.00 0.00 1.82
2412 3250 5.124776 TGCTAAAGTGGCGTGCTATAATTTT 59.875 36.000 0.00 0.00 0.00 1.82
2413 3251 6.033966 GCTAAAGTGGCGTGCTATAATTTTT 58.966 36.000 0.00 0.00 0.00 1.94
2414 3252 7.148222 TGCTAAAGTGGCGTGCTATAATTTTTA 60.148 33.333 0.00 0.00 0.00 1.52
2415 3253 7.860872 GCTAAAGTGGCGTGCTATAATTTTTAT 59.139 33.333 0.00 0.00 0.00 1.40
2416 3254 9.730420 CTAAAGTGGCGTGCTATAATTTTTATT 57.270 29.630 0.00 0.00 0.00 1.40
2417 3255 7.985634 AAGTGGCGTGCTATAATTTTTATTG 57.014 32.000 0.00 0.00 0.00 1.90
2418 3256 6.503524 AGTGGCGTGCTATAATTTTTATTGG 58.496 36.000 0.00 0.00 0.00 3.16
2419 3257 5.689961 GTGGCGTGCTATAATTTTTATTGGG 59.310 40.000 0.00 0.00 0.00 4.12
2420 3258 4.684242 GGCGTGCTATAATTTTTATTGGGC 59.316 41.667 0.00 0.00 0.00 5.36
2421 3259 4.381566 GCGTGCTATAATTTTTATTGGGCG 59.618 41.667 0.00 0.00 0.00 6.13
2422 3260 4.381566 CGTGCTATAATTTTTATTGGGCGC 59.618 41.667 0.00 0.00 0.00 6.53
2423 3261 4.381566 GTGCTATAATTTTTATTGGGCGCG 59.618 41.667 0.00 0.00 0.00 6.86
2424 3262 4.276183 TGCTATAATTTTTATTGGGCGCGA 59.724 37.500 12.10 0.00 0.00 5.87
2425 3263 4.851558 GCTATAATTTTTATTGGGCGCGAG 59.148 41.667 12.10 0.00 0.00 5.03
2426 3264 5.334569 GCTATAATTTTTATTGGGCGCGAGA 60.335 40.000 12.10 0.00 0.00 4.04
2427 3265 5.705609 ATAATTTTTATTGGGCGCGAGAT 57.294 34.783 12.10 0.00 0.00 2.75
2428 3266 4.385358 AATTTTTATTGGGCGCGAGATT 57.615 36.364 12.10 0.00 0.00 2.40
2429 3267 3.859411 TTTTTATTGGGCGCGAGATTT 57.141 38.095 12.10 0.00 0.00 2.17
2430 3268 3.859411 TTTTATTGGGCGCGAGATTTT 57.141 38.095 12.10 0.00 0.00 1.82
2431 3269 3.859411 TTTATTGGGCGCGAGATTTTT 57.141 38.095 12.10 0.00 0.00 1.94
2432 3270 2.842208 TATTGGGCGCGAGATTTTTG 57.158 45.000 12.10 0.00 0.00 2.44
2433 3271 0.887933 ATTGGGCGCGAGATTTTTGT 59.112 45.000 12.10 0.00 0.00 2.83
2434 3272 1.524848 TTGGGCGCGAGATTTTTGTA 58.475 45.000 12.10 0.00 0.00 2.41
2435 3273 0.800012 TGGGCGCGAGATTTTTGTAC 59.200 50.000 12.10 0.00 0.00 2.90
2436 3274 0.247537 GGGCGCGAGATTTTTGTACG 60.248 55.000 12.10 0.00 0.00 3.67
2437 3275 0.247537 GGCGCGAGATTTTTGTACGG 60.248 55.000 12.10 0.00 0.00 4.02
2438 3276 0.856080 GCGCGAGATTTTTGTACGGC 60.856 55.000 12.10 0.00 0.00 5.68
2439 3277 0.247537 CGCGAGATTTTTGTACGGCC 60.248 55.000 0.00 0.00 0.00 6.13
2440 3278 0.247537 GCGAGATTTTTGTACGGCCG 60.248 55.000 26.86 26.86 0.00 6.13
2441 3279 1.073177 CGAGATTTTTGTACGGCCGT 58.927 50.000 36.01 36.01 0.00 5.68
2442 3280 1.461897 CGAGATTTTTGTACGGCCGTT 59.538 47.619 38.94 17.48 0.00 4.44
2443 3281 2.723618 CGAGATTTTTGTACGGCCGTTG 60.724 50.000 38.94 7.05 0.00 4.10
2444 3282 1.538075 AGATTTTTGTACGGCCGTTGG 59.462 47.619 38.94 4.56 0.00 3.77
2445 3283 1.536331 GATTTTTGTACGGCCGTTGGA 59.464 47.619 38.94 17.11 0.00 3.53
2446 3284 0.945813 TTTTTGTACGGCCGTTGGAG 59.054 50.000 38.94 3.15 0.00 3.86
2447 3285 0.106335 TTTTGTACGGCCGTTGGAGA 59.894 50.000 38.94 16.18 0.00 3.71
2448 3286 0.322322 TTTGTACGGCCGTTGGAGAT 59.678 50.000 38.94 12.44 0.00 2.75
2449 3287 0.390603 TTGTACGGCCGTTGGAGATG 60.391 55.000 38.94 0.38 0.00 2.90
2450 3288 2.171725 GTACGGCCGTTGGAGATGC 61.172 63.158 38.94 9.36 0.00 3.91
2451 3289 2.355986 TACGGCCGTTGGAGATGCT 61.356 57.895 38.94 9.80 0.00 3.79
2452 3290 2.292794 TACGGCCGTTGGAGATGCTC 62.293 60.000 38.94 0.00 0.00 4.26
2453 3291 2.586792 GGCCGTTGGAGATGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
2454 3292 1.078143 GGCCGTTGGAGATGCTCTT 60.078 57.895 0.00 0.00 0.00 2.85
2455 3293 0.178068 GGCCGTTGGAGATGCTCTTA 59.822 55.000 0.00 0.00 0.00 2.10
2456 3294 1.576356 GCCGTTGGAGATGCTCTTAG 58.424 55.000 0.00 0.00 0.00 2.18
2515 3353 4.025145 GGCTATAAATAAAGCGCTCACGTT 60.025 41.667 12.06 3.28 42.83 3.99
2567 3406 8.861086 GTTCAGTCCCTGTCTCATTATTAGATA 58.139 37.037 0.00 0.00 32.61 1.98
2591 3430 7.933215 AGTAGGTTGTTTAGTTTTCTGTTGT 57.067 32.000 0.00 0.00 0.00 3.32
2625 3464 5.571784 TCTAGCCGAAACGAGATTTCTAA 57.428 39.130 0.00 0.00 44.03 2.10
2632 3471 6.202188 GCCGAAACGAGATTTCTAATAATGGA 59.798 38.462 0.00 0.00 44.03 3.41
2643 3482 8.854614 ATTTCTAATAATGGAAATCGGAGAGG 57.145 34.615 0.00 0.00 41.31 3.69
2644 3483 6.360370 TCTAATAATGGAAATCGGAGAGGG 57.640 41.667 0.00 0.00 43.63 4.30
2645 3484 6.082031 TCTAATAATGGAAATCGGAGAGGGA 58.918 40.000 0.00 0.00 43.63 4.20
2646 3485 5.850046 AATAATGGAAATCGGAGAGGGAT 57.150 39.130 0.00 0.00 43.63 3.85
2647 3486 6.952605 AATAATGGAAATCGGAGAGGGATA 57.047 37.500 0.00 0.00 43.63 2.59
2648 3487 7.516450 AATAATGGAAATCGGAGAGGGATAT 57.484 36.000 0.00 0.00 43.63 1.63
2649 3488 5.428184 AATGGAAATCGGAGAGGGATATC 57.572 43.478 0.00 0.00 43.63 1.63
2651 3490 4.090090 TGGAAATCGGAGAGGGATATCTC 58.910 47.826 2.05 0.00 43.63 2.75
2652 3491 4.202727 TGGAAATCGGAGAGGGATATCTCT 60.203 45.833 4.27 4.27 45.87 3.10
2653 3492 4.775253 GGAAATCGGAGAGGGATATCTCTT 59.225 45.833 6.55 0.00 43.51 2.85
2683 3522 5.011738 TCAAACAAAAGTCGAGTCTCCCTAT 59.988 40.000 0.00 0.00 0.00 2.57
2687 3526 5.221661 ACAAAAGTCGAGTCTCCCTATGTTT 60.222 40.000 0.00 0.00 0.00 2.83
2694 3533 4.246458 GAGTCTCCCTATGTTTGTGTGTC 58.754 47.826 0.00 0.00 0.00 3.67
2695 3534 3.904339 AGTCTCCCTATGTTTGTGTGTCT 59.096 43.478 0.00 0.00 0.00 3.41
2696 3535 4.348168 AGTCTCCCTATGTTTGTGTGTCTT 59.652 41.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.754209 CGTATCCCTGATATAGCAGACAATTC 59.246 42.308 19.47 6.66 38.14 2.17
56 57 3.627492 CCCCGTATCCCTGATATAGCAGA 60.627 52.174 19.47 0.74 38.14 4.26
60 61 3.954904 CTCACCCCGTATCCCTGATATAG 59.045 52.174 0.00 0.00 0.00 1.31
66 67 1.382695 ACCTCACCCCGTATCCCTG 60.383 63.158 0.00 0.00 0.00 4.45
93 94 1.342174 CATGCCCATCCAGCCAATTAC 59.658 52.381 0.00 0.00 0.00 1.89
135 136 5.509716 AAAGTGCCAAGTACTAAAACACC 57.490 39.130 0.00 0.00 0.00 4.16
144 145 9.961265 AGTAAAGAAAAATAAAGTGCCAAGTAC 57.039 29.630 0.00 0.00 0.00 2.73
182 504 8.964476 TCACAAGAGAAGTAAGAAAGACAATT 57.036 30.769 0.00 0.00 0.00 2.32
195 517 5.544176 TCTGGATACCTTTCACAAGAGAAGT 59.456 40.000 0.00 0.00 30.57 3.01
294 616 6.763135 TGTACTAGATACATCCGTCTAAACGT 59.237 38.462 0.00 0.00 41.93 3.99
299 621 9.346005 TGATTTTGTACTAGATACATCCGTCTA 57.654 33.333 0.00 0.00 43.46 2.59
301 623 9.130312 GATGATTTTGTACTAGATACATCCGTC 57.870 37.037 0.00 0.45 43.46 4.79
315 637 5.997385 ACACTCAAACGGATGATTTTGTAC 58.003 37.500 0.00 0.00 34.81 2.90
342 664 3.000727 ACCTCGATTTAGTTTTGCTCGG 58.999 45.455 0.00 0.00 0.00 4.63
343 665 4.435651 GGAACCTCGATTTAGTTTTGCTCG 60.436 45.833 0.00 0.00 0.00 5.03
346 668 3.434299 TCGGAACCTCGATTTAGTTTTGC 59.566 43.478 0.00 0.00 33.92 3.68
347 669 5.600908 TTCGGAACCTCGATTTAGTTTTG 57.399 39.130 0.00 0.00 39.03 2.44
348 670 5.993891 GTTTCGGAACCTCGATTTAGTTTT 58.006 37.500 0.00 0.00 39.03 2.43
466 792 8.260818 TCTTTGAACTGAATATCTAGGAGTTGG 58.739 37.037 0.00 0.00 0.00 3.77
576 903 2.734346 GTGCAACCACAATGCCGC 60.734 61.111 0.00 0.00 43.16 6.53
586 913 6.874134 CCTATAATATCTGGTACTGTGCAACC 59.126 42.308 0.00 0.00 34.36 3.77
619 1204 3.993658 ATATCACTCACAGGTCCCCTA 57.006 47.619 0.00 0.00 29.64 3.53
620 1205 2.877154 ATATCACTCACAGGTCCCCT 57.123 50.000 0.00 0.00 0.00 4.79
697 1298 3.672255 ATGCGCGCACGTACGTACT 62.672 57.895 39.05 15.02 42.83 2.73
922 1574 3.139770 AGGGTTAGATAGCTAGGGTCGAA 59.860 47.826 0.00 0.00 0.00 3.71
924 1576 3.157750 AGGGTTAGATAGCTAGGGTCG 57.842 52.381 0.00 0.00 0.00 4.79
987 1661 3.088532 CTCCCTCATGGCTAGCTAGTAG 58.911 54.545 21.62 9.86 0.00 2.57
988 1662 2.819726 GCTCCCTCATGGCTAGCTAGTA 60.820 54.545 21.62 11.84 37.65 1.82
989 1663 2.008242 CTCCCTCATGGCTAGCTAGT 57.992 55.000 21.62 0.00 0.00 2.57
990 1664 0.607620 GCTCCCTCATGGCTAGCTAG 59.392 60.000 16.84 16.84 37.65 3.42
991 1665 0.833834 GGCTCCCTCATGGCTAGCTA 60.834 60.000 15.72 9.47 39.39 3.32
992 1666 2.146061 GGCTCCCTCATGGCTAGCT 61.146 63.158 15.72 0.00 39.39 3.32
993 1667 2.429494 GGCTCCCTCATGGCTAGC 59.571 66.667 6.04 6.04 38.99 3.42
994 1668 1.449353 GTGGCTCCCTCATGGCTAG 59.551 63.158 0.00 0.00 0.00 3.42
995 1669 2.434843 CGTGGCTCCCTCATGGCTA 61.435 63.158 0.00 0.00 0.00 3.93
996 1670 3.790437 CGTGGCTCCCTCATGGCT 61.790 66.667 0.00 0.00 0.00 4.75
1105 1785 0.935366 GACCGCGCATCACTACTAGC 60.935 60.000 8.75 0.00 0.00 3.42
1135 1818 1.380920 GTCCCCTGGTAGCCGTAGT 60.381 63.158 0.00 0.00 0.00 2.73
1139 1822 1.076192 AGTAGTCCCCTGGTAGCCG 60.076 63.158 0.00 0.00 0.00 5.52
1146 1829 2.427245 CCCAGCGAGTAGTCCCCTG 61.427 68.421 6.09 6.09 0.00 4.45
1147 1830 2.042843 CCCAGCGAGTAGTCCCCT 60.043 66.667 0.00 0.00 0.00 4.79
1158 1841 4.813526 CTCGTCGTCGTCCCAGCG 62.814 72.222 1.33 0.00 38.33 5.18
1256 1943 6.073003 CGTAGCTAGGATCGATATATGCATGA 60.073 42.308 10.16 0.00 0.00 3.07
1257 1944 6.082984 CGTAGCTAGGATCGATATATGCATG 58.917 44.000 10.16 0.00 0.00 4.06
1258 1945 5.765677 ACGTAGCTAGGATCGATATATGCAT 59.234 40.000 19.82 3.79 0.00 3.96
1259 1946 5.123936 ACGTAGCTAGGATCGATATATGCA 58.876 41.667 19.82 0.00 0.00 3.96
1277 1964 8.991026 AGAACATATACAGAAGCTAGTACGTAG 58.009 37.037 0.00 0.00 0.00 3.51
1278 1965 8.771766 CAGAACATATACAGAAGCTAGTACGTA 58.228 37.037 0.00 0.00 0.00 3.57
1279 1966 7.640852 CAGAACATATACAGAAGCTAGTACGT 58.359 38.462 0.00 0.00 0.00 3.57
1280 1967 6.579292 GCAGAACATATACAGAAGCTAGTACG 59.421 42.308 0.00 0.00 0.00 3.67
1322 2010 6.447326 TGATGGACCAGCTGGATAGATATAT 58.553 40.000 39.19 18.93 38.94 0.86
1492 2180 4.178169 TCGCCGGGTTGTGTTGGT 62.178 61.111 2.18 0.00 0.00 3.67
1494 2182 4.025401 GCTCGCCGGGTTGTGTTG 62.025 66.667 2.18 0.00 0.00 3.33
1495 2183 3.842925 ATGCTCGCCGGGTTGTGTT 62.843 57.895 2.18 0.00 0.00 3.32
1496 2184 4.329545 ATGCTCGCCGGGTTGTGT 62.330 61.111 2.18 0.00 0.00 3.72
1497 2185 3.499737 GATGCTCGCCGGGTTGTG 61.500 66.667 2.18 0.00 0.00 3.33
1498 2186 3.706373 AGATGCTCGCCGGGTTGT 61.706 61.111 2.18 0.00 0.00 3.32
1499 2187 3.197790 CAGATGCTCGCCGGGTTG 61.198 66.667 2.18 0.00 0.00 3.77
1566 2254 1.299165 GACACTGCACTGTCGTCGT 60.299 57.895 10.20 0.00 31.61 4.34
1633 2321 0.318441 TCAGTTCAGCGAGGAACCAG 59.682 55.000 13.81 8.80 46.52 4.00
1634 2322 0.756294 TTCAGTTCAGCGAGGAACCA 59.244 50.000 13.81 1.77 46.52 3.67
1635 2323 1.149148 GTTCAGTTCAGCGAGGAACC 58.851 55.000 13.81 0.00 46.52 3.62
1638 2326 0.318441 CAGGTTCAGTTCAGCGAGGA 59.682 55.000 0.00 0.00 0.00 3.71
1669 2357 2.881352 GCACTGCTCGGCGTAGAC 60.881 66.667 6.85 0.96 0.00 2.59
1679 2367 3.684788 CCAAATTAAGTAGACGCACTGCT 59.315 43.478 0.00 0.00 43.07 4.24
1709 2397 8.785866 GGTGATTACCGATCAACCGATGATATG 61.786 44.444 4.00 2.17 45.07 1.78
1710 2398 6.849028 GGTGATTACCGATCAACCGATGATAT 60.849 42.308 4.00 0.00 45.07 1.63
1711 2399 5.566032 GGTGATTACCGATCAACCGATGATA 60.566 44.000 4.00 0.00 45.07 2.15
1712 2400 4.799586 GGTGATTACCGATCAACCGATGAT 60.800 45.833 3.68 3.68 45.07 2.45
1713 2401 3.491964 GGTGATTACCGATCAACCGATGA 60.492 47.826 0.00 0.00 45.07 2.92
1714 2402 2.800544 GGTGATTACCGATCAACCGATG 59.199 50.000 0.00 0.00 45.07 3.84
1715 2403 3.107642 GGTGATTACCGATCAACCGAT 57.892 47.619 0.00 0.00 45.07 4.18
1716 2404 2.589798 GGTGATTACCGATCAACCGA 57.410 50.000 0.00 0.00 45.07 4.69
1745 2433 6.233434 ACCATCGACCGAAGTACAGTATATA 58.767 40.000 0.00 0.00 0.00 0.86
1807 2547 3.941483 AGTAGGTTTCAGTGTGCATATGC 59.059 43.478 21.09 21.09 42.50 3.14
1818 2558 9.504710 GCGTCATACATATATAGTAGGTTTCAG 57.495 37.037 6.78 0.00 0.00 3.02
1819 2559 9.016438 TGCGTCATACATATATAGTAGGTTTCA 57.984 33.333 6.78 2.99 0.00 2.69
1820 2560 9.286946 GTGCGTCATACATATATAGTAGGTTTC 57.713 37.037 6.78 0.00 0.00 2.78
1822 2562 8.344446 TGTGCGTCATACATATATAGTAGGTT 57.656 34.615 6.78 0.00 0.00 3.50
1850 2612 8.186821 GGATCAATTCAAACTTGTGAGGATTAG 58.813 37.037 0.00 0.00 0.00 1.73
1883 2645 8.680903 CATTAAATGAAGAGTAATGAACTGGCT 58.319 33.333 0.00 0.00 39.07 4.75
1912 2721 4.624015 ACTTTTGAAGGAACACATGCATG 58.376 39.130 25.09 25.09 0.00 4.06
1913 2722 4.942761 ACTTTTGAAGGAACACATGCAT 57.057 36.364 0.00 0.00 0.00 3.96
1914 2723 4.159321 TGAACTTTTGAAGGAACACATGCA 59.841 37.500 0.00 0.00 0.00 3.96
1915 2724 4.681744 TGAACTTTTGAAGGAACACATGC 58.318 39.130 0.00 0.00 0.00 4.06
2017 2846 4.230745 AGTGTGGTCCACAAAGTAAAGT 57.769 40.909 26.36 1.95 46.28 2.66
2021 2850 5.818678 ATAGAAGTGTGGTCCACAAAGTA 57.181 39.130 26.36 15.00 46.28 2.24
2146 2984 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
2147 2985 3.512516 GGCGCCTGTTGGAGATGC 61.513 66.667 22.15 0.00 34.95 3.91
2148 2986 2.825836 GGGCGCCTGTTGGAGATG 60.826 66.667 28.56 0.00 34.95 2.90
2149 2987 2.424842 TTTGGGCGCCTGTTGGAGAT 62.425 55.000 28.56 0.00 34.95 2.75
2150 2988 2.632602 TTTTGGGCGCCTGTTGGAGA 62.633 55.000 28.56 1.45 34.95 3.71
2151 2989 1.743321 TTTTTGGGCGCCTGTTGGAG 61.743 55.000 28.56 0.00 36.16 3.86
2152 2990 1.758514 TTTTTGGGCGCCTGTTGGA 60.759 52.632 28.56 5.58 34.57 3.53
2153 2991 2.818132 TTTTTGGGCGCCTGTTGG 59.182 55.556 28.56 0.00 0.00 3.77
2171 3009 9.123955 AAAACTAATTTTTAGTCCGCGGAGCTT 62.124 37.037 31.97 19.66 43.72 3.74
2172 3010 7.735295 AAAACTAATTTTTAGTCCGCGGAGCT 61.735 38.462 31.97 28.18 43.72 4.09
2173 3011 5.618418 AAAACTAATTTTTAGTCCGCGGAGC 60.618 40.000 31.97 22.85 42.90 4.70
2174 3012 5.541098 AAACTAATTTTTAGTCCGCGGAG 57.459 39.130 31.97 15.37 0.00 4.63
2175 3013 5.945466 AAAACTAATTTTTAGTCCGCGGA 57.055 34.783 27.28 27.28 35.52 5.54
2204 3042 1.799258 CTGCTGGAGTTGTTGGGCAC 61.799 60.000 0.00 0.00 0.00 5.01
2205 3043 1.529010 CTGCTGGAGTTGTTGGGCA 60.529 57.895 0.00 0.00 0.00 5.36
2206 3044 0.610232 ATCTGCTGGAGTTGTTGGGC 60.610 55.000 0.00 0.00 0.00 5.36
2207 3045 1.171308 CATCTGCTGGAGTTGTTGGG 58.829 55.000 0.00 0.00 0.00 4.12
2208 3046 1.901591 ACATCTGCTGGAGTTGTTGG 58.098 50.000 7.02 0.00 31.60 3.77
2209 3047 5.220739 GCTATAACATCTGCTGGAGTTGTTG 60.221 44.000 26.08 15.64 42.26 3.33
2210 3048 4.878397 GCTATAACATCTGCTGGAGTTGTT 59.122 41.667 23.07 23.07 43.83 2.83
2211 3049 4.446371 GCTATAACATCTGCTGGAGTTGT 58.554 43.478 7.02 7.02 36.35 3.32
2212 3050 3.492383 CGCTATAACATCTGCTGGAGTTG 59.508 47.826 5.79 5.79 0.00 3.16
2213 3051 3.722147 CGCTATAACATCTGCTGGAGTT 58.278 45.455 0.00 6.76 0.00 3.01
2214 3052 2.546795 GCGCTATAACATCTGCTGGAGT 60.547 50.000 0.00 0.00 0.00 3.85
2215 3053 2.064762 GCGCTATAACATCTGCTGGAG 58.935 52.381 0.00 0.00 0.00 3.86
2216 3054 1.688735 AGCGCTATAACATCTGCTGGA 59.311 47.619 8.99 0.00 0.00 3.86
2217 3055 2.160822 AGCGCTATAACATCTGCTGG 57.839 50.000 8.99 0.00 0.00 4.85
2218 3056 5.657470 TTTTAGCGCTATAACATCTGCTG 57.343 39.130 19.60 0.00 34.08 4.41
2219 3057 5.817816 AGTTTTTAGCGCTATAACATCTGCT 59.182 36.000 29.31 14.97 36.51 4.24
2220 3058 6.049263 AGTTTTTAGCGCTATAACATCTGC 57.951 37.500 29.31 14.42 0.00 4.26
2221 3059 8.788813 CAAAAGTTTTTAGCGCTATAACATCTG 58.211 33.333 29.31 21.94 0.00 2.90
2222 3060 7.968405 CCAAAAGTTTTTAGCGCTATAACATCT 59.032 33.333 29.31 20.32 0.00 2.90
2223 3061 7.220108 CCCAAAAGTTTTTAGCGCTATAACATC 59.780 37.037 29.31 19.03 0.00 3.06
2224 3062 7.033185 CCCAAAAGTTTTTAGCGCTATAACAT 58.967 34.615 29.31 21.46 0.00 2.71
2225 3063 6.383415 CCCAAAAGTTTTTAGCGCTATAACA 58.617 36.000 29.31 16.42 0.00 2.41
2226 3064 5.287752 GCCCAAAAGTTTTTAGCGCTATAAC 59.712 40.000 24.44 24.44 0.00 1.89
2227 3065 5.404096 GCCCAAAAGTTTTTAGCGCTATAA 58.596 37.500 19.60 17.11 0.00 0.98
2228 3066 4.437659 CGCCCAAAAGTTTTTAGCGCTATA 60.438 41.667 19.60 11.17 41.67 1.31
2229 3067 3.672241 CGCCCAAAAGTTTTTAGCGCTAT 60.672 43.478 19.60 0.00 41.67 2.97
2230 3068 2.350964 CGCCCAAAAGTTTTTAGCGCTA 60.351 45.455 21.86 14.45 41.67 4.26
2231 3069 1.601914 CGCCCAAAAGTTTTTAGCGCT 60.602 47.619 21.86 17.26 41.67 5.92
2232 3070 0.781787 CGCCCAAAAGTTTTTAGCGC 59.218 50.000 21.86 0.00 41.67 5.92
2233 3071 0.781787 GCGCCCAAAAGTTTTTAGCG 59.218 50.000 26.16 26.16 46.24 4.26
2234 3072 0.781787 CGCGCCCAAAAGTTTTTAGC 59.218 50.000 0.00 3.86 0.00 3.09
2235 3073 0.781787 GCGCGCCCAAAAGTTTTTAG 59.218 50.000 23.24 0.00 0.00 1.85
2236 3074 0.935366 CGCGCGCCCAAAAGTTTTTA 60.935 50.000 27.72 0.00 0.00 1.52
2237 3075 2.234335 CGCGCGCCCAAAAGTTTTT 61.234 52.632 27.72 0.00 0.00 1.94
2238 3076 2.656973 CGCGCGCCCAAAAGTTTT 60.657 55.556 27.72 0.00 0.00 2.43
2247 3085 4.776647 ATTTTTCAGCGCGCGCCC 62.777 61.111 46.98 25.08 43.17 6.13
2248 3086 3.535491 CATTTTTCAGCGCGCGCC 61.535 61.111 46.98 30.60 43.17 6.53
2249 3087 4.182206 GCATTTTTCAGCGCGCGC 62.182 61.111 45.10 45.10 42.33 6.86
2250 3088 0.589729 ATAGCATTTTTCAGCGCGCG 60.590 50.000 28.44 28.44 35.48 6.86
2251 3089 1.115639 GATAGCATTTTTCAGCGCGC 58.884 50.000 26.66 26.66 35.48 6.86
2252 3090 1.379299 CGATAGCATTTTTCAGCGCG 58.621 50.000 0.00 0.00 35.48 6.86
2266 3104 0.439985 AAATATGCTGCGCGCGATAG 59.560 50.000 37.18 29.48 43.27 2.08
2267 3105 0.865111 AAAATATGCTGCGCGCGATA 59.135 45.000 37.18 22.34 43.27 2.92
2268 3106 0.658244 CAAAATATGCTGCGCGCGAT 60.658 50.000 37.18 20.72 43.27 4.58
2269 3107 1.297524 CAAAATATGCTGCGCGCGA 60.298 52.632 37.18 17.91 43.27 5.87
2270 3108 2.287965 CCAAAATATGCTGCGCGCG 61.288 57.895 28.44 28.44 43.27 6.86
2271 3109 1.945662 CCCAAAATATGCTGCGCGC 60.946 57.895 27.26 27.26 39.77 6.86
2272 3110 1.945662 GCCCAAAATATGCTGCGCG 60.946 57.895 0.00 0.00 0.00 6.86
2273 3111 0.595825 GAGCCCAAAATATGCTGCGC 60.596 55.000 0.00 0.00 34.99 6.09
2274 3112 0.031178 GGAGCCCAAAATATGCTGCG 59.969 55.000 0.00 0.00 34.99 5.18
2275 3113 1.068127 CTGGAGCCCAAAATATGCTGC 59.932 52.381 0.00 0.00 42.92 5.25
2276 3114 2.658285 TCTGGAGCCCAAAATATGCTG 58.342 47.619 0.00 0.00 34.99 4.41
2277 3115 3.607490 ATCTGGAGCCCAAAATATGCT 57.393 42.857 0.00 0.00 38.24 3.79
2278 3116 4.320494 CGTAATCTGGAGCCCAAAATATGC 60.320 45.833 0.00 0.00 30.80 3.14
2279 3117 4.320494 GCGTAATCTGGAGCCCAAAATATG 60.320 45.833 0.00 0.00 30.80 1.78
2280 3118 3.821033 GCGTAATCTGGAGCCCAAAATAT 59.179 43.478 0.00 0.00 30.80 1.28
2281 3119 3.211045 GCGTAATCTGGAGCCCAAAATA 58.789 45.455 0.00 0.00 30.80 1.40
2282 3120 2.024414 GCGTAATCTGGAGCCCAAAAT 58.976 47.619 0.00 0.00 30.80 1.82
2283 3121 1.459450 GCGTAATCTGGAGCCCAAAA 58.541 50.000 0.00 0.00 30.80 2.44
2284 3122 0.742990 CGCGTAATCTGGAGCCCAAA 60.743 55.000 0.00 0.00 30.80 3.28
2285 3123 1.153449 CGCGTAATCTGGAGCCCAA 60.153 57.895 0.00 0.00 30.80 4.12
2286 3124 2.499205 CGCGTAATCTGGAGCCCA 59.501 61.111 0.00 0.00 0.00 5.36
2287 3125 2.967615 GCGCGTAATCTGGAGCCC 60.968 66.667 8.43 0.00 0.00 5.19
2288 3126 3.330853 CGCGCGTAATCTGGAGCC 61.331 66.667 24.19 0.00 0.00 4.70
2289 3127 3.989595 GCGCGCGTAATCTGGAGC 61.990 66.667 32.35 6.21 0.00 4.70
2290 3128 1.812214 GAAGCGCGCGTAATCTGGAG 61.812 60.000 32.35 0.00 0.00 3.86
2291 3129 1.876714 GAAGCGCGCGTAATCTGGA 60.877 57.895 32.35 0.00 0.00 3.86
2292 3130 2.164663 TGAAGCGCGCGTAATCTGG 61.165 57.895 32.35 0.04 0.00 3.86
2293 3131 1.013323 GTGAAGCGCGCGTAATCTG 60.013 57.895 32.35 0.92 0.00 2.90
2294 3132 1.011968 TTGTGAAGCGCGCGTAATCT 61.012 50.000 32.35 17.09 0.00 2.40
2295 3133 0.026285 ATTGTGAAGCGCGCGTAATC 59.974 50.000 32.35 24.93 0.00 1.75
2296 3134 0.446222 AATTGTGAAGCGCGCGTAAT 59.554 45.000 32.35 16.27 0.00 1.89
2297 3135 0.236187 AAATTGTGAAGCGCGCGTAA 59.764 45.000 32.35 14.00 0.00 3.18
2298 3136 0.451957 CAAATTGTGAAGCGCGCGTA 60.452 50.000 32.35 13.43 0.00 4.42
2299 3137 1.725625 CAAATTGTGAAGCGCGCGT 60.726 52.632 32.35 24.81 0.00 6.01
2300 3138 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
2301 3139 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
2302 3140 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
2303 3141 0.780002 CAGTGCAAATTGTGAAGCGC 59.220 50.000 0.00 0.00 37.74 5.92
2304 3142 2.124011 ACAGTGCAAATTGTGAAGCG 57.876 45.000 0.00 0.00 0.00 4.68
2318 3156 3.659735 CGCGTCTAAAAAGCATACAGTG 58.340 45.455 0.00 0.00 32.01 3.66
2319 3157 2.093783 GCGCGTCTAAAAAGCATACAGT 59.906 45.455 8.43 0.00 32.01 3.55
2320 3158 2.093625 TGCGCGTCTAAAAAGCATACAG 59.906 45.455 8.43 0.00 32.43 2.74
2321 3159 2.070028 TGCGCGTCTAAAAAGCATACA 58.930 42.857 8.43 0.00 32.43 2.29
2322 3160 2.798834 TGCGCGTCTAAAAAGCATAC 57.201 45.000 8.43 0.00 32.43 2.39
2323 3161 4.349663 AAATGCGCGTCTAAAAAGCATA 57.650 36.364 8.43 0.00 46.32 3.14
2325 3163 2.697431 AAATGCGCGTCTAAAAAGCA 57.303 40.000 8.43 0.00 42.28 3.91
2326 3164 4.030195 CCTAAAAATGCGCGTCTAAAAAGC 59.970 41.667 8.43 0.00 0.00 3.51
2327 3165 4.030195 GCCTAAAAATGCGCGTCTAAAAAG 59.970 41.667 8.43 0.00 0.00 2.27
2328 3166 3.915569 GCCTAAAAATGCGCGTCTAAAAA 59.084 39.130 8.43 0.00 0.00 1.94
2329 3167 3.494232 GCCTAAAAATGCGCGTCTAAAA 58.506 40.909 8.43 0.00 0.00 1.52
2330 3168 2.474856 CGCCTAAAAATGCGCGTCTAAA 60.475 45.455 8.43 0.00 44.64 1.85
2331 3169 1.061421 CGCCTAAAAATGCGCGTCTAA 59.939 47.619 8.43 0.00 44.64 2.10
2332 3170 0.648441 CGCCTAAAAATGCGCGTCTA 59.352 50.000 8.43 0.00 44.64 2.59
2333 3171 1.423845 CGCCTAAAAATGCGCGTCT 59.576 52.632 8.43 0.00 44.64 4.18
2334 3172 3.962399 CGCCTAAAAATGCGCGTC 58.038 55.556 8.43 0.00 44.64 5.19
2339 3177 5.802956 TGCTTTAACATACGCCTAAAAATGC 59.197 36.000 0.00 0.00 0.00 3.56
2340 3178 7.804614 TTGCTTTAACATACGCCTAAAAATG 57.195 32.000 0.00 0.00 0.00 2.32
2341 3179 8.032451 ACATTGCTTTAACATACGCCTAAAAAT 58.968 29.630 0.00 0.00 0.00 1.82
2342 3180 7.371936 ACATTGCTTTAACATACGCCTAAAAA 58.628 30.769 0.00 0.00 0.00 1.94
2343 3181 6.915349 ACATTGCTTTAACATACGCCTAAAA 58.085 32.000 0.00 0.00 0.00 1.52
2344 3182 6.503589 ACATTGCTTTAACATACGCCTAAA 57.496 33.333 0.00 0.00 0.00 1.85
2345 3183 6.318628 CAACATTGCTTTAACATACGCCTAA 58.681 36.000 0.00 0.00 0.00 2.69
2346 3184 5.163703 CCAACATTGCTTTAACATACGCCTA 60.164 40.000 0.00 0.00 0.00 3.93
2347 3185 4.380444 CCAACATTGCTTTAACATACGCCT 60.380 41.667 0.00 0.00 0.00 5.52
2348 3186 3.857093 CCAACATTGCTTTAACATACGCC 59.143 43.478 0.00 0.00 0.00 5.68
2349 3187 4.481463 ACCAACATTGCTTTAACATACGC 58.519 39.130 0.00 0.00 0.00 4.42
2350 3188 5.092781 GGACCAACATTGCTTTAACATACG 58.907 41.667 0.00 0.00 0.00 3.06
2351 3189 5.407502 GGGACCAACATTGCTTTAACATAC 58.592 41.667 0.00 0.00 0.00 2.39
2352 3190 4.156922 CGGGACCAACATTGCTTTAACATA 59.843 41.667 0.00 0.00 0.00 2.29
2353 3191 3.056891 CGGGACCAACATTGCTTTAACAT 60.057 43.478 0.00 0.00 0.00 2.71
2354 3192 2.294791 CGGGACCAACATTGCTTTAACA 59.705 45.455 0.00 0.00 0.00 2.41
2355 3193 2.352323 CCGGGACCAACATTGCTTTAAC 60.352 50.000 0.00 0.00 0.00 2.01
2356 3194 1.889829 CCGGGACCAACATTGCTTTAA 59.110 47.619 0.00 0.00 0.00 1.52
2357 3195 1.540267 CCGGGACCAACATTGCTTTA 58.460 50.000 0.00 0.00 0.00 1.85
2358 3196 1.815817 GCCGGGACCAACATTGCTTT 61.816 55.000 2.18 0.00 0.00 3.51
2359 3197 2.275380 GCCGGGACCAACATTGCTT 61.275 57.895 2.18 0.00 0.00 3.91
2360 3198 2.676471 GCCGGGACCAACATTGCT 60.676 61.111 2.18 0.00 0.00 3.91
2361 3199 2.988684 TGCCGGGACCAACATTGC 60.989 61.111 2.18 0.00 0.00 3.56
2362 3200 1.900981 TGTGCCGGGACCAACATTG 60.901 57.895 24.47 0.00 0.00 2.82
2363 3201 1.901464 GTGTGCCGGGACCAACATT 60.901 57.895 24.47 0.00 0.00 2.71
2364 3202 1.485294 TAGTGTGCCGGGACCAACAT 61.485 55.000 24.47 7.21 0.00 2.71
2365 3203 1.697082 TTAGTGTGCCGGGACCAACA 61.697 55.000 24.47 0.93 0.00 3.33
2366 3204 0.535553 TTTAGTGTGCCGGGACCAAC 60.536 55.000 24.47 15.89 0.00 3.77
2367 3205 0.183014 TTTTAGTGTGCCGGGACCAA 59.817 50.000 24.47 11.94 0.00 3.67
2368 3206 0.250553 CTTTTAGTGTGCCGGGACCA 60.251 55.000 24.47 8.92 0.00 4.02
2369 3207 0.250597 ACTTTTAGTGTGCCGGGACC 60.251 55.000 24.47 14.67 0.00 4.46
2370 3208 0.872388 CACTTTTAGTGTGCCGGGAC 59.128 55.000 20.69 20.69 41.19 4.46
2371 3209 3.315765 CACTTTTAGTGTGCCGGGA 57.684 52.632 2.18 0.00 41.19 5.14
2380 3218 3.250040 CACGCCACTTTAGCACTTTTAGT 59.750 43.478 0.00 0.00 0.00 2.24
2381 3219 3.810373 CACGCCACTTTAGCACTTTTAG 58.190 45.455 0.00 0.00 0.00 1.85
2382 3220 2.031508 GCACGCCACTTTAGCACTTTTA 60.032 45.455 0.00 0.00 0.00 1.52
2383 3221 1.269051 GCACGCCACTTTAGCACTTTT 60.269 47.619 0.00 0.00 0.00 2.27
2384 3222 0.310854 GCACGCCACTTTAGCACTTT 59.689 50.000 0.00 0.00 0.00 2.66
2385 3223 0.535102 AGCACGCCACTTTAGCACTT 60.535 50.000 0.00 0.00 0.00 3.16
2386 3224 0.320374 TAGCACGCCACTTTAGCACT 59.680 50.000 0.00 0.00 0.00 4.40
2387 3225 1.369625 ATAGCACGCCACTTTAGCAC 58.630 50.000 0.00 0.00 0.00 4.40
2388 3226 2.971660 TATAGCACGCCACTTTAGCA 57.028 45.000 0.00 0.00 0.00 3.49
2389 3227 4.813296 AATTATAGCACGCCACTTTAGC 57.187 40.909 0.00 0.00 0.00 3.09
2390 3228 9.730420 AATAAAAATTATAGCACGCCACTTTAG 57.270 29.630 0.00 0.00 0.00 1.85
2391 3229 9.509855 CAATAAAAATTATAGCACGCCACTTTA 57.490 29.630 0.00 0.00 0.00 1.85
2392 3230 7.491048 CCAATAAAAATTATAGCACGCCACTTT 59.509 33.333 0.00 0.00 0.00 2.66
2393 3231 6.978080 CCAATAAAAATTATAGCACGCCACTT 59.022 34.615 0.00 0.00 0.00 3.16
2394 3232 6.460953 CCCAATAAAAATTATAGCACGCCACT 60.461 38.462 0.00 0.00 0.00 4.00
2395 3233 5.689961 CCCAATAAAAATTATAGCACGCCAC 59.310 40.000 0.00 0.00 0.00 5.01
2396 3234 5.737635 GCCCAATAAAAATTATAGCACGCCA 60.738 40.000 0.00 0.00 0.00 5.69
2397 3235 4.684242 GCCCAATAAAAATTATAGCACGCC 59.316 41.667 0.00 0.00 0.00 5.68
2398 3236 4.381566 CGCCCAATAAAAATTATAGCACGC 59.618 41.667 0.00 0.00 0.00 5.34
2399 3237 4.381566 GCGCCCAATAAAAATTATAGCACG 59.618 41.667 0.00 0.00 0.00 5.34
2400 3238 4.381566 CGCGCCCAATAAAAATTATAGCAC 59.618 41.667 0.00 0.00 0.00 4.40
2401 3239 4.276183 TCGCGCCCAATAAAAATTATAGCA 59.724 37.500 0.00 0.00 0.00 3.49
2402 3240 4.789784 TCGCGCCCAATAAAAATTATAGC 58.210 39.130 0.00 0.00 0.00 2.97
2403 3241 6.236017 TCTCGCGCCCAATAAAAATTATAG 57.764 37.500 0.00 0.00 0.00 1.31
2404 3242 6.811253 ATCTCGCGCCCAATAAAAATTATA 57.189 33.333 0.00 0.00 0.00 0.98
2405 3243 5.705609 ATCTCGCGCCCAATAAAAATTAT 57.294 34.783 0.00 0.00 0.00 1.28
2406 3244 5.508200 AATCTCGCGCCCAATAAAAATTA 57.492 34.783 0.00 0.00 0.00 1.40
2407 3245 4.385358 AATCTCGCGCCCAATAAAAATT 57.615 36.364 0.00 0.00 0.00 1.82
2408 3246 4.385358 AAATCTCGCGCCCAATAAAAAT 57.615 36.364 0.00 0.00 0.00 1.82
2409 3247 3.859411 AAATCTCGCGCCCAATAAAAA 57.141 38.095 0.00 0.00 0.00 1.94
2410 3248 3.859411 AAAATCTCGCGCCCAATAAAA 57.141 38.095 0.00 0.00 0.00 1.52
2411 3249 3.057174 ACAAAAATCTCGCGCCCAATAAA 60.057 39.130 0.00 0.00 0.00 1.40
2412 3250 2.490115 ACAAAAATCTCGCGCCCAATAA 59.510 40.909 0.00 0.00 0.00 1.40
2413 3251 2.088423 ACAAAAATCTCGCGCCCAATA 58.912 42.857 0.00 0.00 0.00 1.90
2414 3252 0.887933 ACAAAAATCTCGCGCCCAAT 59.112 45.000 0.00 0.00 0.00 3.16
2415 3253 1.198178 GTACAAAAATCTCGCGCCCAA 59.802 47.619 0.00 0.00 0.00 4.12
2416 3254 0.800012 GTACAAAAATCTCGCGCCCA 59.200 50.000 0.00 0.00 0.00 5.36
2417 3255 0.247537 CGTACAAAAATCTCGCGCCC 60.248 55.000 0.00 0.00 0.00 6.13
2418 3256 0.247537 CCGTACAAAAATCTCGCGCC 60.248 55.000 0.00 0.00 0.00 6.53
2419 3257 0.856080 GCCGTACAAAAATCTCGCGC 60.856 55.000 0.00 0.00 0.00 6.86
2420 3258 0.247537 GGCCGTACAAAAATCTCGCG 60.248 55.000 0.00 0.00 0.00 5.87
2421 3259 0.247537 CGGCCGTACAAAAATCTCGC 60.248 55.000 19.50 0.00 0.00 5.03
2422 3260 1.073177 ACGGCCGTACAAAAATCTCG 58.927 50.000 33.34 0.00 0.00 4.04
2423 3261 2.413634 CCAACGGCCGTACAAAAATCTC 60.414 50.000 34.44 0.00 0.00 2.75
2424 3262 1.538075 CCAACGGCCGTACAAAAATCT 59.462 47.619 34.44 9.82 0.00 2.40
2425 3263 1.536331 TCCAACGGCCGTACAAAAATC 59.464 47.619 34.44 0.00 0.00 2.17
2426 3264 1.538075 CTCCAACGGCCGTACAAAAAT 59.462 47.619 34.44 11.63 0.00 1.82
2427 3265 0.945813 CTCCAACGGCCGTACAAAAA 59.054 50.000 34.44 13.05 0.00 1.94
2428 3266 0.106335 TCTCCAACGGCCGTACAAAA 59.894 50.000 34.44 14.99 0.00 2.44
2429 3267 0.322322 ATCTCCAACGGCCGTACAAA 59.678 50.000 34.44 16.78 0.00 2.83
2430 3268 0.390603 CATCTCCAACGGCCGTACAA 60.391 55.000 34.44 18.35 0.00 2.41
2431 3269 1.216977 CATCTCCAACGGCCGTACA 59.783 57.895 34.44 17.32 0.00 2.90
2432 3270 2.171725 GCATCTCCAACGGCCGTAC 61.172 63.158 34.44 9.84 0.00 3.67
2433 3271 2.185867 GCATCTCCAACGGCCGTA 59.814 61.111 34.44 16.93 0.00 4.02
2434 3272 3.665675 GAGCATCTCCAACGGCCGT 62.666 63.158 28.70 28.70 0.00 5.68
2435 3273 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
2448 3286 6.179756 TCATTTCATTGCTTACCTAAGAGCA 58.820 36.000 0.00 0.00 46.37 4.26
2449 3287 6.683974 TCATTTCATTGCTTACCTAAGAGC 57.316 37.500 0.00 0.00 39.33 4.09
2450 3288 8.950210 TCTTTCATTTCATTGCTTACCTAAGAG 58.050 33.333 0.00 0.00 35.33 2.85
2451 3289 8.730680 GTCTTTCATTTCATTGCTTACCTAAGA 58.269 33.333 0.00 0.00 35.33 2.10
2452 3290 8.734386 AGTCTTTCATTTCATTGCTTACCTAAG 58.266 33.333 0.00 0.00 36.40 2.18
2453 3291 8.635765 AGTCTTTCATTTCATTGCTTACCTAA 57.364 30.769 0.00 0.00 0.00 2.69
2454 3292 8.635765 AAGTCTTTCATTTCATTGCTTACCTA 57.364 30.769 0.00 0.00 0.00 3.08
2455 3293 7.530426 AAGTCTTTCATTTCATTGCTTACCT 57.470 32.000 0.00 0.00 0.00 3.08
2456 3294 8.296713 TGTAAGTCTTTCATTTCATTGCTTACC 58.703 33.333 0.00 0.00 36.59 2.85
2505 3343 2.722188 GTTGTGCAACGTGAGCGC 60.722 61.111 17.04 17.04 42.39 5.92
2506 3344 2.047151 AAGGTTGTGCAACGTGAGCG 62.047 55.000 10.42 0.00 42.39 5.03
2567 3406 7.933215 ACAACAGAAAACTAAACAACCTACT 57.067 32.000 0.00 0.00 0.00 2.57
2591 3430 2.184533 TCGGCTAGATCACCAAGGAAA 58.815 47.619 0.00 0.00 0.00 3.13
2625 3464 6.905776 AGATATCCCTCTCCGATTTCCATTAT 59.094 38.462 0.00 0.00 0.00 1.28
2632 3471 6.755542 AAAAGAGATATCCCTCTCCGATTT 57.244 37.500 0.00 0.00 42.31 2.17
2670 3509 3.056821 CACACAAACATAGGGAGACTCGA 60.057 47.826 0.00 0.00 0.00 4.04
2675 3514 4.974645 AAGACACACAAACATAGGGAGA 57.025 40.909 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.