Multiple sequence alignment - TraesCS3A01G046200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G046200 chr3A 100.000 2702 0 0 1 2702 24685081 24682380 0.000000e+00 4990.0
1 TraesCS3A01G046200 chr3B 83.871 1457 139 41 750 2150 18138355 18139771 0.000000e+00 1301.0
2 TraesCS3A01G046200 chr3B 87.074 557 70 2 2 556 18136133 18136689 1.770000e-176 628.0
3 TraesCS3A01G046200 chr3B 83.819 309 38 8 2403 2702 18139842 18140147 1.580000e-72 283.0
4 TraesCS3A01G046200 chr3B 81.493 335 41 9 2322 2645 18652814 18652490 3.450000e-64 255.0
5 TraesCS3A01G046200 chr3B 84.772 197 30 0 1477 1673 18127310 18127114 5.900000e-47 198.0
6 TraesCS3A01G046200 chr4B 84.000 175 25 2 552 726 649572753 649572924 5.980000e-37 165.0
7 TraesCS3A01G046200 chr4B 84.259 108 15 2 2420 2527 539511825 539511930 1.320000e-18 104.0
8 TraesCS3A01G046200 chr4A 80.269 223 39 5 2309 2527 90630789 90630568 2.150000e-36 163.0
9 TraesCS3A01G046200 chr4A 74.384 203 46 6 2327 2527 31156053 31155855 6.200000e-12 82.4
10 TraesCS3A01G046200 chr7B 82.967 182 27 4 546 726 156686762 156686584 7.740000e-36 161.0
11 TraesCS3A01G046200 chr6D 81.215 181 32 2 546 726 32646443 32646621 7.800000e-31 145.0
12 TraesCS3A01G046200 chr2B 81.111 180 28 5 547 726 746267630 746267803 3.630000e-29 139.0
13 TraesCS3A01G046200 chr2B 80.328 183 31 5 546 726 690213203 690213024 1.690000e-27 134.0
14 TraesCS3A01G046200 chr6A 81.006 179 26 5 547 725 37411952 37411782 4.690000e-28 135.0
15 TraesCS3A01G046200 chr1A 81.548 168 27 4 558 725 53441080 53441243 4.690000e-28 135.0
16 TraesCS3A01G046200 chr1A 87.037 54 7 0 2020 2073 429755222 429755275 8.080000e-06 62.1
17 TraesCS3A01G046200 chr5A 80.541 185 26 5 546 729 461935660 461935485 1.690000e-27 134.0
18 TraesCS3A01G046200 chr4D 76.961 204 40 7 2327 2527 437299152 437299351 2.840000e-20 110.0
19 TraesCS3A01G046200 chr5D 82.353 102 18 0 547 648 465359789 465359688 3.710000e-14 89.8
20 TraesCS3A01G046200 chr7D 77.241 145 28 4 2309 2451 232812692 232812551 2.230000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G046200 chr3A 24682380 24685081 2701 True 4990.000000 4990 100.000000 1 2702 1 chr3A.!!$R1 2701
1 TraesCS3A01G046200 chr3B 18136133 18140147 4014 False 737.333333 1301 84.921333 2 2702 3 chr3B.!!$F1 2700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 2442 0.03309 GGCTATATATACGGGCGGGC 59.967 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 3844 0.178992 TAACTAGGGCCATGGCATGC 60.179 55.0 36.56 20.19 44.11 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.179111 TGGTGATGACGGCGAATCTC 60.179 55.000 16.62 15.99 0.00 2.75
46 47 5.648092 GCTACTGTGAAGAAACCAATGGTAT 59.352 40.000 4.88 0.00 33.12 2.73
47 48 6.183360 GCTACTGTGAAGAAACCAATGGTATC 60.183 42.308 4.88 2.98 33.12 2.24
48 49 5.630121 ACTGTGAAGAAACCAATGGTATCA 58.370 37.500 4.88 5.72 33.12 2.15
50 51 6.207417 ACTGTGAAGAAACCAATGGTATCAAG 59.793 38.462 4.88 10.33 33.12 3.02
72 73 1.697284 AGCGAGGAGAGTATGATGCA 58.303 50.000 0.00 0.00 0.00 3.96
76 77 2.298446 CGAGGAGAGTATGATGCATGGT 59.702 50.000 2.46 0.00 0.00 3.55
82 83 3.067106 GAGTATGATGCATGGTAACGGG 58.933 50.000 2.46 0.00 42.51 5.28
99 101 1.594564 GGAAGGGCCGTAGAATCGC 60.595 63.158 0.00 0.00 0.00 4.58
102 104 2.901051 AAGGGCCGTAGAATCGCACG 62.901 60.000 0.00 3.94 37.89 5.34
103 105 2.103538 GGCCGTAGAATCGCACGA 59.896 61.111 11.06 0.00 40.56 4.35
106 108 1.846648 CCGTAGAATCGCACGATGC 59.153 57.895 6.27 4.41 40.56 3.91
130 132 1.324736 GAAATAGGCAAGCGAGACGTG 59.675 52.381 0.00 0.00 0.00 4.49
135 137 0.169672 GGCAAGCGAGACGTGTAGTA 59.830 55.000 0.00 0.00 0.00 1.82
144 146 4.669318 CGAGACGTGTAGTAATCCACAAT 58.331 43.478 0.00 0.00 0.00 2.71
152 154 6.475727 CGTGTAGTAATCCACAATGTCTAAGG 59.524 42.308 0.00 0.00 0.00 2.69
153 155 6.258068 GTGTAGTAATCCACAATGTCTAAGGC 59.742 42.308 0.00 0.00 0.00 4.35
158 160 3.035363 TCCACAATGTCTAAGGCGGATA 58.965 45.455 0.00 0.00 0.00 2.59
190 192 1.470098 CGAAAGGAGAATGTTGGCTGG 59.530 52.381 0.00 0.00 0.00 4.85
194 196 0.623723 GGAGAATGTTGGCTGGGGTA 59.376 55.000 0.00 0.00 0.00 3.69
196 198 1.559682 GAGAATGTTGGCTGGGGTAGA 59.440 52.381 0.00 0.00 0.00 2.59
201 203 2.602676 TTGGCTGGGGTAGAGTGGC 61.603 63.158 0.00 0.00 0.00 5.01
204 206 2.893398 CTGGGGTAGAGTGGCGAC 59.107 66.667 0.00 0.00 0.00 5.19
283 285 8.727910 ACATATGCTAGATTTATCATTGCACTG 58.272 33.333 1.58 0.00 33.80 3.66
290 292 6.598503 AGATTTATCATTGCACTGAGATCCA 58.401 36.000 12.62 0.00 0.00 3.41
302 304 7.281841 TGCACTGAGATCCATTGACAAATATA 58.718 34.615 0.00 0.00 0.00 0.86
307 309 9.722184 CTGAGATCCATTGACAAATATAGTCAT 57.278 33.333 10.63 0.00 44.66 3.06
308 310 9.498176 TGAGATCCATTGACAAATATAGTCATG 57.502 33.333 10.63 10.48 44.66 3.07
336 338 8.041323 ACATATTTGACCGAGTTACAAAGATCT 58.959 33.333 0.00 0.00 34.66 2.75
339 341 5.320549 TGACCGAGTTACAAAGATCTACC 57.679 43.478 0.00 0.00 0.00 3.18
379 382 8.543774 AGTTCACCTAATTGATAGTCAGATTGT 58.456 33.333 0.00 0.00 0.00 2.71
380 383 9.167311 GTTCACCTAATTGATAGTCAGATTGTT 57.833 33.333 0.00 0.00 0.00 2.83
451 454 7.981102 TCGTGCTCATAGTAGATACTACATT 57.019 36.000 10.78 0.00 41.18 2.71
456 459 9.131791 TGCTCATAGTAGATACTACATTGTTCA 57.868 33.333 10.78 7.37 41.18 3.18
475 478 5.997746 TGTTCAAGGATAGTTGAAGTTCTGG 59.002 40.000 4.17 0.00 45.00 3.86
480 483 5.316987 AGGATAGTTGAAGTTCTGGGTTTG 58.683 41.667 4.17 0.00 0.00 2.93
490 493 3.020984 GTTCTGGGTTTGTTCCAAGTCA 58.979 45.455 0.00 0.00 33.36 3.41
493 496 4.285863 TCTGGGTTTGTTCCAAGTCAAAT 58.714 39.130 0.00 0.00 36.25 2.32
501 504 8.888716 GGTTTGTTCCAAGTCAAATTTGTTTAT 58.111 29.630 17.47 1.04 36.25 1.40
502 505 9.701355 GTTTGTTCCAAGTCAAATTTGTTTATG 57.299 29.630 17.47 11.96 36.25 1.90
516 519 7.972832 ATTTGTTTATGTTTGACCGAGTCTA 57.027 32.000 5.77 0.00 33.15 2.59
523 526 8.515695 TTATGTTTGACCGAGTCTATAGAAGA 57.484 34.615 3.40 0.00 33.15 2.87
562 565 8.768501 AAAAAGAAGAAGACTTGGGAGTATTT 57.231 30.769 0.00 0.00 37.44 1.40
563 566 7.987750 AAAGAAGAAGACTTGGGAGTATTTC 57.012 36.000 0.00 0.00 37.44 2.17
564 567 6.943899 AGAAGAAGACTTGGGAGTATTTCT 57.056 37.500 0.00 0.00 37.44 2.52
565 568 7.323052 AGAAGAAGACTTGGGAGTATTTCTT 57.677 36.000 13.69 13.69 44.32 2.52
566 569 7.603963 GAAGAAGACTTGGGAGTATTTCTTC 57.396 40.000 19.19 19.19 46.08 2.87
567 570 6.943899 AGAAGACTTGGGAGTATTTCTTCT 57.056 37.500 5.95 5.95 37.44 2.85
568 571 8.437274 AAGAAGACTTGGGAGTATTTCTTCTA 57.563 34.615 11.09 0.00 41.35 2.10
569 572 8.073467 AGAAGACTTGGGAGTATTTCTTCTAG 57.927 38.462 9.39 0.00 39.58 2.43
570 573 7.676468 AGAAGACTTGGGAGTATTTCTTCTAGT 59.324 37.037 9.39 0.00 39.58 2.57
571 574 8.896722 AAGACTTGGGAGTATTTCTTCTAGTA 57.103 34.615 0.00 0.00 33.74 1.82
572 575 9.495382 AAGACTTGGGAGTATTTCTTCTAGTAT 57.505 33.333 0.00 0.00 33.74 2.12
599 602 6.721571 TTGATATCACGAAGAAGGTGTTTC 57.278 37.500 4.48 0.00 36.76 2.78
608 611 4.757149 CGAAGAAGGTGTTTCCAAGAGATT 59.243 41.667 0.00 0.00 39.02 2.40
674 677 4.264253 TGGATCTTGTATCCAAAGCAGTG 58.736 43.478 4.25 0.00 44.54 3.66
691 694 5.907207 AGCAGTGTACCTGTAATAGTGATG 58.093 41.667 11.47 0.00 43.55 3.07
692 695 5.656859 AGCAGTGTACCTGTAATAGTGATGA 59.343 40.000 11.47 0.00 43.55 2.92
696 699 8.683615 CAGTGTACCTGTAATAGTGATGAGTAA 58.316 37.037 0.00 0.00 36.37 2.24
747 782 9.971922 AAAAATTGAAACAGAAGAACCATAGAG 57.028 29.630 0.00 0.00 0.00 2.43
771 806 2.758089 GCTTCTCGTGCCTGCATGG 61.758 63.158 11.18 3.07 39.35 3.66
853 2370 4.655649 TCCTAATCTTCTGATTGGCTAGCA 59.344 41.667 18.24 0.00 42.34 3.49
863 2380 5.300034 TCTGATTGGCTAGCAATTAATGGTG 59.700 40.000 18.24 4.41 40.70 4.17
878 2395 4.101790 GTGACGGGCCATGCGTTG 62.102 66.667 4.39 0.00 0.00 4.10
894 2411 0.108329 GTTGGGTGATCGATCGGTGT 60.108 55.000 20.03 1.44 0.00 4.16
895 2412 0.174845 TTGGGTGATCGATCGGTGTC 59.825 55.000 20.03 11.63 0.00 3.67
896 2413 0.968393 TGGGTGATCGATCGGTGTCA 60.968 55.000 20.03 14.05 0.00 3.58
897 2414 0.527817 GGGTGATCGATCGGTGTCAC 60.528 60.000 26.51 26.51 40.07 3.67
898 2415 0.172578 GGTGATCGATCGGTGTCACA 59.827 55.000 30.89 14.62 42.00 3.58
899 2416 1.269166 GTGATCGATCGGTGTCACAC 58.731 55.000 28.07 18.21 40.41 3.82
923 2440 3.859650 CGGCTATATATACGGGCGG 57.140 57.895 18.49 7.50 42.51 6.13
924 2441 0.313043 CGGCTATATATACGGGCGGG 59.687 60.000 18.49 1.05 42.51 6.13
925 2442 0.033090 GGCTATATATACGGGCGGGC 59.967 60.000 0.00 0.00 0.00 6.13
955 2472 2.615912 AGCTTCAAACTCACAGCAAGAC 59.384 45.455 0.00 0.00 34.49 3.01
965 2482 3.476552 TCACAGCAAGACTTGGTAAAGG 58.523 45.455 18.96 9.78 39.79 3.11
976 2493 1.376295 GGTAAAGGCGGCCGAAGAA 60.376 57.895 33.48 6.41 0.00 2.52
1004 2521 3.691118 GCTGACTAATCTGCAACCATGAA 59.309 43.478 0.00 0.00 46.24 2.57
1043 2572 1.703438 CTGATGCTCGCACTTGAGGC 61.703 60.000 0.00 0.00 36.47 4.70
1044 2573 2.437359 ATGCTCGCACTTGAGGCC 60.437 61.111 0.00 0.00 36.47 5.19
1084 2613 4.379243 CCTCCGCTGTTGCCGTCT 62.379 66.667 0.00 0.00 35.36 4.18
1088 2617 2.664851 CGCTGTTGCCGTCTCCAA 60.665 61.111 0.00 0.00 35.36 3.53
1098 2627 2.737376 GTCTCCAACGACGTGGGC 60.737 66.667 17.10 0.00 39.34 5.36
1115 2644 1.723870 GCACCATTCTCATGCCGAC 59.276 57.895 0.00 0.00 33.06 4.79
1135 2664 1.375013 GAAGGCAAAGGTACGGCGA 60.375 57.895 16.62 0.00 0.00 5.54
1139 2668 2.395360 GCAAAGGTACGGCGATGCA 61.395 57.895 16.62 0.00 34.10 3.96
1155 2697 2.671177 GCATGCGTGCGTGAACTCT 61.671 57.895 16.43 0.00 42.28 3.24
1159 2701 0.303493 TGCGTGCGTGAACTCTTTTC 59.697 50.000 0.00 0.00 0.00 2.29
1162 2704 2.128035 CGTGCGTGAACTCTTTTCTCT 58.872 47.619 0.00 0.00 0.00 3.10
1164 2706 3.362237 CGTGCGTGAACTCTTTTCTCTAG 59.638 47.826 0.00 0.00 0.00 2.43
1170 2712 6.569994 GCGTGAACTCTTTTCTCTAGTCCTTA 60.570 42.308 0.00 0.00 0.00 2.69
1179 2721 9.411189 TCTTTTCTCTAGTCCTTATAGAACCTC 57.589 37.037 0.00 0.00 27.76 3.85
1223 2765 2.032528 TCGTTGAGGGCTTGCAGG 59.967 61.111 0.00 0.00 0.00 4.85
1374 2916 2.738480 CCGTCCGTCTCAAACCCA 59.262 61.111 0.00 0.00 0.00 4.51
1430 2972 4.028490 CGGGCCCAAGTGCACCTA 62.028 66.667 24.92 0.00 0.00 3.08
1431 2973 2.361230 GGGCCCAAGTGCACCTAC 60.361 66.667 19.95 0.00 0.00 3.18
1458 3000 4.364409 GCCGGCGACAACAACGAC 62.364 66.667 12.58 0.00 35.25 4.34
1511 3080 4.314440 GCCGTGGGAGTGCTGTGA 62.314 66.667 0.00 0.00 0.00 3.58
1512 3081 2.357517 CCGTGGGAGTGCTGTGAC 60.358 66.667 0.00 0.00 0.00 3.67
1513 3082 2.421314 CGTGGGAGTGCTGTGACA 59.579 61.111 0.00 0.00 0.00 3.58
1514 3083 1.004560 CGTGGGAGTGCTGTGACAT 60.005 57.895 0.00 0.00 0.00 3.06
1515 3084 1.293963 CGTGGGAGTGCTGTGACATG 61.294 60.000 0.00 0.00 0.00 3.21
1516 3085 0.957395 GTGGGAGTGCTGTGACATGG 60.957 60.000 0.00 0.00 0.00 3.66
1517 3086 2.042831 GGGAGTGCTGTGACATGGC 61.043 63.158 0.00 0.00 0.00 4.40
1518 3087 1.002868 GGAGTGCTGTGACATGGCT 60.003 57.895 0.00 0.00 0.00 4.75
1519 3088 1.023513 GGAGTGCTGTGACATGGCTC 61.024 60.000 0.00 0.00 0.00 4.70
1520 3089 0.036577 GAGTGCTGTGACATGGCTCT 60.037 55.000 0.00 1.74 33.43 4.09
1521 3090 0.321387 AGTGCTGTGACATGGCTCTG 60.321 55.000 0.00 0.91 0.00 3.35
1522 3091 0.604780 GTGCTGTGACATGGCTCTGT 60.605 55.000 0.00 0.00 0.00 3.41
1523 3092 0.604511 TGCTGTGACATGGCTCTGTG 60.605 55.000 0.00 0.00 0.00 3.66
1524 3093 1.919956 GCTGTGACATGGCTCTGTGC 61.920 60.000 0.00 0.00 41.94 4.57
1625 3194 2.119484 ATCTTGAACCCGTTCCGCCA 62.119 55.000 5.17 0.00 38.77 5.69
1664 3233 4.697756 CGGCTTCCCAGGTCGCAA 62.698 66.667 0.00 0.00 0.00 4.85
1706 3275 1.068127 CGGCGGTAATAACTAGCACCT 59.932 52.381 0.00 0.00 29.49 4.00
1755 3332 1.642112 TGAATTTCCCCTGCATGCAA 58.358 45.000 22.88 5.82 0.00 4.08
1845 3422 2.942752 GCTTGCCTGAATGGTGATCAGA 60.943 50.000 0.00 0.00 45.74 3.27
1849 3426 2.681848 GCCTGAATGGTGATCAGACAAG 59.318 50.000 0.00 0.00 45.74 3.16
1850 3427 2.681848 CCTGAATGGTGATCAGACAAGC 59.318 50.000 0.00 0.00 45.74 4.01
1851 3428 3.340928 CTGAATGGTGATCAGACAAGCA 58.659 45.455 0.00 1.05 45.74 3.91
1852 3429 3.945921 CTGAATGGTGATCAGACAAGCAT 59.054 43.478 0.00 0.00 45.74 3.79
1853 3430 3.692593 TGAATGGTGATCAGACAAGCATG 59.307 43.478 0.00 0.00 32.66 4.06
1854 3431 1.456296 TGGTGATCAGACAAGCATGC 58.544 50.000 10.51 10.51 0.00 4.06
1922 3499 8.600449 TTTCAATTATGAATGGTGTGGTTTTC 57.400 30.769 0.00 0.00 44.70 2.29
1926 3503 4.871933 ATGAATGGTGTGGTTTTCTTCC 57.128 40.909 0.00 0.00 0.00 3.46
1927 3504 2.962421 TGAATGGTGTGGTTTTCTTCCC 59.038 45.455 0.00 0.00 0.00 3.97
1936 3513 2.685897 TGGTTTTCTTCCCGACAAGTTG 59.314 45.455 0.00 0.00 0.00 3.16
1939 3516 4.497507 GGTTTTCTTCCCGACAAGTTGAAG 60.498 45.833 10.54 2.37 36.42 3.02
1957 3534 2.949177 AGTTGCTTACCACATGTCCA 57.051 45.000 0.00 0.00 0.00 4.02
1958 3535 2.504367 AGTTGCTTACCACATGTCCAC 58.496 47.619 0.00 0.00 0.00 4.02
1968 3546 2.026356 CCACATGTCCACCTGGTGAATA 60.026 50.000 27.94 6.70 35.23 1.75
1976 3554 3.197766 TCCACCTGGTGAATAGTGTGATC 59.802 47.826 27.94 0.00 35.23 2.92
1977 3555 3.190079 CACCTGGTGAATAGTGTGATCG 58.810 50.000 22.33 0.00 35.23 3.69
1982 3560 4.888917 TGGTGAATAGTGTGATCGTTTGA 58.111 39.130 0.00 0.00 0.00 2.69
2001 3579 3.023832 TGATCTCACATGGTCTCGCTAA 58.976 45.455 0.00 0.00 0.00 3.09
2003 3581 3.953712 TCTCACATGGTCTCGCTAAAA 57.046 42.857 0.00 0.00 0.00 1.52
2009 3587 3.258372 ACATGGTCTCGCTAAAACTCTCA 59.742 43.478 0.00 0.00 0.00 3.27
2010 3588 3.577649 TGGTCTCGCTAAAACTCTCAG 57.422 47.619 0.00 0.00 0.00 3.35
2012 3590 2.417515 GGTCTCGCTAAAACTCTCAGGG 60.418 54.545 0.00 0.00 0.00 4.45
2046 3624 7.842887 ATCTCTACTCCTATAAAAGACCCAC 57.157 40.000 0.00 0.00 0.00 4.61
2049 3627 7.560626 TCTCTACTCCTATAAAAGACCCACTTC 59.439 40.741 0.00 0.00 37.93 3.01
2052 3630 5.954150 ACTCCTATAAAAGACCCACTTCGTA 59.046 40.000 0.00 0.00 37.93 3.43
2054 3632 6.870769 TCCTATAAAAGACCCACTTCGTAAG 58.129 40.000 0.00 0.00 37.93 2.34
2058 3636 4.635699 AAAGACCCACTTCGTAAGGATT 57.364 40.909 0.00 0.00 37.93 3.01
2061 3639 3.000727 GACCCACTTCGTAAGGATTGTG 58.999 50.000 0.00 0.00 38.47 3.33
2063 3641 3.579586 ACCCACTTCGTAAGGATTGTGTA 59.420 43.478 0.00 0.00 38.47 2.90
2067 3645 5.520288 CCACTTCGTAAGGATTGTGTATCTG 59.480 44.000 0.00 0.00 33.53 2.90
2081 3659 3.248602 GTGTATCTGCCATCCGTCATTTC 59.751 47.826 0.00 0.00 0.00 2.17
2083 3661 4.343814 TGTATCTGCCATCCGTCATTTCTA 59.656 41.667 0.00 0.00 0.00 2.10
2088 3666 2.354821 GCCATCCGTCATTTCTAACCAC 59.645 50.000 0.00 0.00 0.00 4.16
2091 3669 3.328382 TCCGTCATTTCTAACCACCTG 57.672 47.619 0.00 0.00 0.00 4.00
2092 3670 2.635915 TCCGTCATTTCTAACCACCTGT 59.364 45.455 0.00 0.00 0.00 4.00
2093 3671 3.000727 CCGTCATTTCTAACCACCTGTC 58.999 50.000 0.00 0.00 0.00 3.51
2094 3672 3.306780 CCGTCATTTCTAACCACCTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2095 3673 4.081862 CCGTCATTTCTAACCACCTGTCTA 60.082 45.833 0.00 0.00 0.00 2.59
2103 3682 6.770746 TCTAACCACCTGTCTACATCTAAC 57.229 41.667 0.00 0.00 0.00 2.34
2108 3687 5.111989 CCACCTGTCTACATCTAACACATG 58.888 45.833 0.00 0.00 0.00 3.21
2114 3693 1.656652 ACATCTAACACATGCGAGGC 58.343 50.000 0.00 0.00 0.00 4.70
2120 3699 0.321564 AACACATGCGAGGCAAGCTA 60.322 50.000 5.84 0.00 43.62 3.32
2125 3704 1.197036 CATGCGAGGCAAGCTATCATG 59.803 52.381 5.84 0.00 43.62 3.07
2139 3718 7.571613 GCAAGCTATCATGTTTTTGCAAAATGA 60.572 33.333 24.39 23.21 40.30 2.57
2142 3721 5.945466 ATCATGTTTTTGCAAAATGACCC 57.055 34.783 24.39 11.11 29.70 4.46
2143 3722 4.774124 TCATGTTTTTGCAAAATGACCCA 58.226 34.783 24.39 15.60 0.00 4.51
2144 3723 5.374921 TCATGTTTTTGCAAAATGACCCAT 58.625 33.333 24.39 16.88 0.00 4.00
2145 3724 5.238868 TCATGTTTTTGCAAAATGACCCATG 59.761 36.000 24.39 24.50 0.00 3.66
2146 3725 4.521146 TGTTTTTGCAAAATGACCCATGT 58.479 34.783 24.39 0.00 0.00 3.21
2147 3726 4.574013 TGTTTTTGCAAAATGACCCATGTC 59.426 37.500 24.39 6.78 42.12 3.06
2155 3734 1.760527 TGACCCATGTCACCAGTGG 59.239 57.895 7.91 7.91 46.40 4.00
2156 3735 1.675641 GACCCATGTCACCAGTGGC 60.676 63.158 9.78 0.00 41.37 5.01
2157 3736 2.747460 CCCATGTCACCAGTGGCG 60.747 66.667 9.78 0.00 38.19 5.69
2158 3737 2.032528 CCATGTCACCAGTGGCGT 59.967 61.111 9.78 0.00 38.19 5.68
2159 3738 1.295101 CCATGTCACCAGTGGCGTA 59.705 57.895 9.78 0.00 38.19 4.42
2160 3739 0.321210 CCATGTCACCAGTGGCGTAA 60.321 55.000 9.78 0.00 38.19 3.18
2161 3740 0.796312 CATGTCACCAGTGGCGTAAC 59.204 55.000 9.78 2.95 38.19 2.50
2162 3741 0.321298 ATGTCACCAGTGGCGTAACC 60.321 55.000 9.78 0.00 38.19 2.85
2170 3749 4.287580 TGGCGTAACCATCGTTGG 57.712 55.556 11.06 11.06 46.36 3.77
2203 3782 2.779506 GCCAACAGCCTAAGTTACACT 58.220 47.619 0.00 0.00 34.35 3.55
2204 3783 3.934068 GCCAACAGCCTAAGTTACACTA 58.066 45.455 0.00 0.00 34.35 2.74
2205 3784 3.933332 GCCAACAGCCTAAGTTACACTAG 59.067 47.826 0.00 0.00 34.35 2.57
2206 3785 3.933332 CCAACAGCCTAAGTTACACTAGC 59.067 47.826 0.00 0.00 0.00 3.42
2207 3786 4.322801 CCAACAGCCTAAGTTACACTAGCT 60.323 45.833 0.00 0.00 31.85 3.32
2208 3787 5.105473 CCAACAGCCTAAGTTACACTAGCTA 60.105 44.000 0.00 0.00 30.95 3.32
2209 3788 5.579564 ACAGCCTAAGTTACACTAGCTAC 57.420 43.478 0.00 0.00 30.95 3.58
2210 3789 5.014858 ACAGCCTAAGTTACACTAGCTACA 58.985 41.667 0.00 0.00 30.95 2.74
2211 3790 5.125739 ACAGCCTAAGTTACACTAGCTACAG 59.874 44.000 0.00 0.00 30.95 2.74
2212 3791 5.125739 CAGCCTAAGTTACACTAGCTACAGT 59.874 44.000 0.00 0.00 30.95 3.55
2224 3803 7.336161 CACTAGCTACAGTGTCCTTATTACT 57.664 40.000 0.00 0.00 40.89 2.24
2225 3804 8.447924 CACTAGCTACAGTGTCCTTATTACTA 57.552 38.462 0.00 0.00 40.89 1.82
2226 3805 8.561212 CACTAGCTACAGTGTCCTTATTACTAG 58.439 40.741 0.00 3.59 40.89 2.57
2227 3806 8.492782 ACTAGCTACAGTGTCCTTATTACTAGA 58.507 37.037 0.00 0.00 0.00 2.43
2228 3807 9.339850 CTAGCTACAGTGTCCTTATTACTAGAA 57.660 37.037 0.00 0.00 0.00 2.10
2229 3808 8.228035 AGCTACAGTGTCCTTATTACTAGAAG 57.772 38.462 0.00 0.00 0.00 2.85
2230 3809 7.835181 AGCTACAGTGTCCTTATTACTAGAAGT 59.165 37.037 0.00 0.00 0.00 3.01
2231 3810 8.468399 GCTACAGTGTCCTTATTACTAGAAGTT 58.532 37.037 0.00 0.00 0.00 2.66
2232 3811 9.790389 CTACAGTGTCCTTATTACTAGAAGTTG 57.210 37.037 0.00 0.00 0.00 3.16
2233 3812 7.097834 ACAGTGTCCTTATTACTAGAAGTTGC 58.902 38.462 0.00 0.00 0.00 4.17
2234 3813 7.038941 ACAGTGTCCTTATTACTAGAAGTTGCT 60.039 37.037 0.00 0.00 0.00 3.91
2235 3814 8.467598 CAGTGTCCTTATTACTAGAAGTTGCTA 58.532 37.037 0.00 0.00 0.00 3.49
2236 3815 8.468399 AGTGTCCTTATTACTAGAAGTTGCTAC 58.532 37.037 0.00 0.00 0.00 3.58
2237 3816 8.248945 GTGTCCTTATTACTAGAAGTTGCTACA 58.751 37.037 0.00 0.00 0.00 2.74
2238 3817 8.467598 TGTCCTTATTACTAGAAGTTGCTACAG 58.532 37.037 0.00 0.00 0.00 2.74
2239 3818 8.468399 GTCCTTATTACTAGAAGTTGCTACAGT 58.532 37.037 0.00 0.00 0.00 3.55
2240 3819 8.684520 TCCTTATTACTAGAAGTTGCTACAGTC 58.315 37.037 0.00 0.00 0.00 3.51
2241 3820 8.467598 CCTTATTACTAGAAGTTGCTACAGTCA 58.532 37.037 0.00 0.00 0.00 3.41
2242 3821 9.856488 CTTATTACTAGAAGTTGCTACAGTCAA 57.144 33.333 0.00 0.00 0.00 3.18
2244 3823 8.709386 ATTACTAGAAGTTGCTACAGTCAATG 57.291 34.615 0.00 0.00 0.00 2.82
2245 3824 6.346477 ACTAGAAGTTGCTACAGTCAATGA 57.654 37.500 0.00 0.00 0.00 2.57
2246 3825 6.759272 ACTAGAAGTTGCTACAGTCAATGAA 58.241 36.000 0.00 0.00 0.00 2.57
2247 3826 7.390027 ACTAGAAGTTGCTACAGTCAATGAAT 58.610 34.615 0.00 0.00 0.00 2.57
2248 3827 6.492007 AGAAGTTGCTACAGTCAATGAATG 57.508 37.500 9.29 9.29 33.62 2.67
2249 3828 5.413833 AGAAGTTGCTACAGTCAATGAATGG 59.586 40.000 15.30 0.00 31.53 3.16
2250 3829 4.012374 AGTTGCTACAGTCAATGAATGGG 58.988 43.478 15.30 8.33 31.53 4.00
2251 3830 3.719268 TGCTACAGTCAATGAATGGGT 57.281 42.857 15.30 0.00 31.53 4.51
2252 3831 3.346315 TGCTACAGTCAATGAATGGGTG 58.654 45.455 15.30 5.71 31.53 4.61
2253 3832 2.684881 GCTACAGTCAATGAATGGGTGG 59.315 50.000 15.30 0.00 31.53 4.61
2254 3833 3.622206 GCTACAGTCAATGAATGGGTGGA 60.622 47.826 15.30 0.00 31.53 4.02
2255 3834 3.744940 ACAGTCAATGAATGGGTGGAT 57.255 42.857 15.30 0.00 31.53 3.41
2256 3835 4.860802 ACAGTCAATGAATGGGTGGATA 57.139 40.909 15.30 0.00 31.53 2.59
2257 3836 4.785301 ACAGTCAATGAATGGGTGGATAG 58.215 43.478 15.30 0.00 31.53 2.08
2258 3837 3.567164 CAGTCAATGAATGGGTGGATAGC 59.433 47.826 2.35 0.00 0.00 2.97
2259 3838 2.887152 GTCAATGAATGGGTGGATAGCC 59.113 50.000 0.00 0.00 44.85 3.93
2268 3847 3.860605 TGGATAGCCACGCCGCAT 61.861 61.111 0.00 0.00 39.92 4.73
2269 3848 3.349006 GGATAGCCACGCCGCATG 61.349 66.667 0.00 0.00 0.00 4.06
2270 3849 4.017877 GATAGCCACGCCGCATGC 62.018 66.667 7.91 7.91 0.00 4.06
2280 3859 4.584518 CCGCATGCCATGGCCCTA 62.585 66.667 33.44 16.38 41.09 3.53
2281 3860 2.981909 CGCATGCCATGGCCCTAG 60.982 66.667 33.44 20.29 41.09 3.02
2282 3861 2.196776 GCATGCCATGGCCCTAGT 59.803 61.111 33.44 11.73 41.09 2.57
2283 3862 1.456331 GCATGCCATGGCCCTAGTT 60.456 57.895 33.44 8.79 41.09 2.24
2284 3863 0.178992 GCATGCCATGGCCCTAGTTA 60.179 55.000 33.44 13.93 41.09 2.24
2285 3864 1.609208 CATGCCATGGCCCTAGTTAC 58.391 55.000 33.44 3.62 41.09 2.50
2286 3865 0.478507 ATGCCATGGCCCTAGTTACC 59.521 55.000 33.44 2.83 41.09 2.85
2287 3866 0.623324 TGCCATGGCCCTAGTTACCT 60.623 55.000 33.44 0.00 41.09 3.08
2288 3867 0.108774 GCCATGGCCCTAGTTACCTC 59.891 60.000 27.24 0.00 34.56 3.85
2289 3868 0.393077 CCATGGCCCTAGTTACCTCG 59.607 60.000 0.00 0.00 0.00 4.63
2290 3869 0.393077 CATGGCCCTAGTTACCTCGG 59.607 60.000 0.00 0.00 0.00 4.63
2291 3870 0.763223 ATGGCCCTAGTTACCTCGGG 60.763 60.000 0.00 0.00 44.79 5.14
2293 3872 3.547247 CCCTAGTTACCTCGGGCC 58.453 66.667 0.00 0.00 36.93 5.80
2294 3873 1.075450 CCCTAGTTACCTCGGGCCT 60.075 63.158 0.84 0.00 36.93 5.19
2295 3874 1.400530 CCCTAGTTACCTCGGGCCTG 61.401 65.000 4.71 4.71 36.93 4.85
2296 3875 1.400530 CCTAGTTACCTCGGGCCTGG 61.401 65.000 12.87 10.05 0.00 4.45
2297 3876 2.029307 CTAGTTACCTCGGGCCTGGC 62.029 65.000 12.87 11.05 0.00 4.85
2298 3877 2.525284 TAGTTACCTCGGGCCTGGCT 62.525 60.000 19.68 0.00 0.00 4.75
2299 3878 2.062177 GTTACCTCGGGCCTGGCTA 61.062 63.158 19.68 3.70 0.00 3.93
2300 3879 2.062177 TTACCTCGGGCCTGGCTAC 61.062 63.158 19.68 11.07 0.00 3.58
2301 3880 2.525284 TTACCTCGGGCCTGGCTACT 62.525 60.000 19.68 0.00 0.00 2.57
2302 3881 2.923634 TACCTCGGGCCTGGCTACTC 62.924 65.000 19.68 0.81 0.00 2.59
2303 3882 3.541713 CTCGGGCCTGGCTACTCC 61.542 72.222 19.68 10.15 0.00 3.85
2306 3885 4.825679 GGGCCTGGCTACTCCCCT 62.826 72.222 19.68 0.00 32.60 4.79
2307 3886 3.483869 GGCCTGGCTACTCCCCTG 61.484 72.222 19.68 0.00 0.00 4.45
2315 3894 2.042762 TACTCCCCTGCCTGCCAT 59.957 61.111 0.00 0.00 0.00 4.40
2316 3895 1.619363 TACTCCCCTGCCTGCCATT 60.619 57.895 0.00 0.00 0.00 3.16
2317 3896 1.214305 TACTCCCCTGCCTGCCATTT 61.214 55.000 0.00 0.00 0.00 2.32
2320 3899 1.610086 CCCCTGCCTGCCATTTTGA 60.610 57.895 0.00 0.00 0.00 2.69
2325 3904 3.228453 CCTGCCTGCCATTTTGATCTAT 58.772 45.455 0.00 0.00 0.00 1.98
2333 3912 7.211573 CCTGCCATTTTGATCTATATTTGCAA 58.788 34.615 0.00 0.00 0.00 4.08
2335 3914 8.651391 TGCCATTTTGATCTATATTTGCAAAG 57.349 30.769 18.19 3.65 31.10 2.77
2340 3919 9.822185 ATTTTGATCTATATTTGCAAAGAACCC 57.178 29.630 18.19 4.28 31.10 4.11
2341 3920 6.959639 TGATCTATATTTGCAAAGAACCCC 57.040 37.500 18.19 4.87 0.00 4.95
2351 3930 3.394606 TGCAAAGAACCCCTTAGTCTCTT 59.605 43.478 0.00 0.00 34.00 2.85
2352 3931 4.141251 TGCAAAGAACCCCTTAGTCTCTTT 60.141 41.667 0.00 0.00 36.92 2.52
2356 3935 7.450903 CAAAGAACCCCTTAGTCTCTTTAGAA 58.549 38.462 0.00 0.00 35.20 2.10
2360 3939 7.680739 AGAACCCCTTAGTCTCTTTAGAAATCT 59.319 37.037 0.00 0.00 32.16 2.40
2362 3941 6.384595 ACCCCTTAGTCTCTTTAGAAATCTCC 59.615 42.308 0.00 0.00 32.16 3.71
2365 3944 7.363968 CCCTTAGTCTCTTTAGAAATCTCCGTT 60.364 40.741 0.00 0.00 32.16 4.44
2372 3951 1.205055 AGAAATCTCCGTTCCTCCCC 58.795 55.000 0.00 0.00 0.00 4.81
2373 3952 0.909623 GAAATCTCCGTTCCTCCCCA 59.090 55.000 0.00 0.00 0.00 4.96
2374 3953 1.490910 GAAATCTCCGTTCCTCCCCAT 59.509 52.381 0.00 0.00 0.00 4.00
2375 3954 1.132500 AATCTCCGTTCCTCCCCATC 58.868 55.000 0.00 0.00 0.00 3.51
2376 3955 1.115930 ATCTCCGTTCCTCCCCATCG 61.116 60.000 0.00 0.00 0.00 3.84
2377 3956 3.447025 CTCCGTTCCTCCCCATCGC 62.447 68.421 0.00 0.00 0.00 4.58
2378 3957 3.781307 CCGTTCCTCCCCATCGCA 61.781 66.667 0.00 0.00 0.00 5.10
2379 3958 2.505982 CGTTCCTCCCCATCGCAT 59.494 61.111 0.00 0.00 0.00 4.73
2381 3960 1.227973 GTTCCTCCCCATCGCATCC 60.228 63.158 0.00 0.00 0.00 3.51
2383 3962 1.278302 TTCCTCCCCATCGCATCCAA 61.278 55.000 0.00 0.00 0.00 3.53
2384 3963 1.227102 CCTCCCCATCGCATCCAAA 59.773 57.895 0.00 0.00 0.00 3.28
2385 3964 1.103398 CCTCCCCATCGCATCCAAAC 61.103 60.000 0.00 0.00 0.00 2.93
2386 3965 0.394216 CTCCCCATCGCATCCAAACA 60.394 55.000 0.00 0.00 0.00 2.83
2387 3966 0.258484 TCCCCATCGCATCCAAACAT 59.742 50.000 0.00 0.00 0.00 2.71
2388 3967 1.492599 TCCCCATCGCATCCAAACATA 59.507 47.619 0.00 0.00 0.00 2.29
2389 3968 2.108075 TCCCCATCGCATCCAAACATAT 59.892 45.455 0.00 0.00 0.00 1.78
2390 3969 3.329225 TCCCCATCGCATCCAAACATATA 59.671 43.478 0.00 0.00 0.00 0.86
2391 3970 4.018506 TCCCCATCGCATCCAAACATATAT 60.019 41.667 0.00 0.00 0.00 0.86
2392 3971 4.096833 CCCCATCGCATCCAAACATATATG 59.903 45.833 11.29 11.29 0.00 1.78
2393 3972 4.943093 CCCATCGCATCCAAACATATATGA 59.057 41.667 19.63 0.00 0.00 2.15
2394 3973 5.415389 CCCATCGCATCCAAACATATATGAA 59.585 40.000 19.63 0.16 0.00 2.57
2395 3974 6.072008 CCCATCGCATCCAAACATATATGAAA 60.072 38.462 19.63 0.48 0.00 2.69
2396 3975 7.369607 CCATCGCATCCAAACATATATGAAAA 58.630 34.615 19.63 0.82 0.00 2.29
2397 3976 7.866898 CCATCGCATCCAAACATATATGAAAAA 59.133 33.333 19.63 1.49 0.00 1.94
2398 3977 9.414295 CATCGCATCCAAACATATATGAAAAAT 57.586 29.630 19.63 3.66 0.00 1.82
2421 4000 8.932434 AATAAATTTTGGGCAAAACCTAACAT 57.068 26.923 0.00 0.00 42.32 2.71
2465 4047 8.581253 ACCAAAAATAGGGTGATTTTCTCTAG 57.419 34.615 0.00 0.00 37.91 2.43
2472 4054 9.440761 AATAGGGTGATTTTCTCTAGAGTATGT 57.559 33.333 19.21 5.08 0.00 2.29
2473 4055 7.118496 AGGGTGATTTTCTCTAGAGTATGTG 57.882 40.000 19.21 0.00 0.00 3.21
2476 4058 8.041323 GGGTGATTTTCTCTAGAGTATGTGAAA 58.959 37.037 19.21 8.80 0.00 2.69
2477 4059 9.436957 GGTGATTTTCTCTAGAGTATGTGAAAA 57.563 33.333 19.21 16.27 38.83 2.29
2501 4083 5.745312 TCATTATCCTATCTTGCATCCGT 57.255 39.130 0.00 0.00 0.00 4.69
2533 4115 4.725490 AGGGCACTTTGCTAGTTTCTAAA 58.275 39.130 0.00 0.00 44.28 1.85
2536 4118 6.946009 AGGGCACTTTGCTAGTTTCTAAAATA 59.054 34.615 0.00 0.00 44.28 1.40
2575 4157 8.600449 ACTATGTTATCTCTAAATCAAGCTGC 57.400 34.615 0.00 0.00 0.00 5.25
2579 4161 8.284945 TGTTATCTCTAAATCAAGCTGCAAAT 57.715 30.769 1.02 0.00 0.00 2.32
2611 4197 3.662759 TTTTATCAGGATCACACCCCC 57.337 47.619 0.00 0.00 0.00 5.40
2613 4199 1.507140 TATCAGGATCACACCCCCAC 58.493 55.000 0.00 0.00 0.00 4.61
2624 4210 0.887933 CACCCCCACCTTCATTTTCG 59.112 55.000 0.00 0.00 0.00 3.46
2628 4214 2.752903 CCCCCACCTTCATTTTCGTTAG 59.247 50.000 0.00 0.00 0.00 2.34
2629 4215 2.752903 CCCCACCTTCATTTTCGTTAGG 59.247 50.000 0.00 0.00 0.00 2.69
2633 4219 4.022329 CCACCTTCATTTTCGTTAGGCTTT 60.022 41.667 0.00 0.00 0.00 3.51
2637 4223 4.846779 TCATTTTCGTTAGGCTTTTGCT 57.153 36.364 0.00 0.00 46.54 3.91
2642 4228 5.950758 TTTCGTTAGGCTTTTGCTAATGA 57.049 34.783 0.00 0.00 46.54 2.57
2643 4229 6.509418 TTTCGTTAGGCTTTTGCTAATGAT 57.491 33.333 0.00 0.00 46.54 2.45
2645 4231 4.270084 TCGTTAGGCTTTTGCTAATGATCG 59.730 41.667 0.00 0.00 46.54 3.69
2646 4232 4.270084 CGTTAGGCTTTTGCTAATGATCGA 59.730 41.667 0.00 0.00 46.54 3.59
2660 4246 6.017934 GCTAATGATCGAGCACCTGATTTTTA 60.018 38.462 5.03 0.00 38.62 1.52
2661 4247 6.757897 AATGATCGAGCACCTGATTTTTAA 57.242 33.333 5.03 0.00 0.00 1.52
2668 4256 6.972328 TCGAGCACCTGATTTTTAATTAATGC 59.028 34.615 0.00 3.64 0.00 3.56
2680 4268 9.956640 ATTTTTAATTAATGCCAGTCAAATCCA 57.043 25.926 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249120 AGATTCGCCGTCATCACCAA 59.751 50.000 2.70 0.00 0.00 3.67
10 11 1.658717 CAGTAGCCGAGATTCGCCG 60.659 63.158 0.00 0.00 38.82 6.46
11 12 0.872021 CACAGTAGCCGAGATTCGCC 60.872 60.000 0.00 0.00 38.82 5.54
13 14 2.097629 TCTTCACAGTAGCCGAGATTCG 59.902 50.000 0.00 0.00 40.07 3.34
20 21 2.163818 TGGTTTCTTCACAGTAGCCG 57.836 50.000 0.00 0.00 0.00 5.52
28 29 5.476945 ACCTTGATACCATTGGTTTCTTCAC 59.523 40.000 21.92 2.43 37.09 3.18
46 47 3.118000 TCATACTCTCCTCGCTACCTTGA 60.118 47.826 0.00 0.00 0.00 3.02
47 48 3.215151 TCATACTCTCCTCGCTACCTTG 58.785 50.000 0.00 0.00 0.00 3.61
48 49 3.579534 TCATACTCTCCTCGCTACCTT 57.420 47.619 0.00 0.00 0.00 3.50
50 51 2.094957 GCATCATACTCTCCTCGCTACC 60.095 54.545 0.00 0.00 0.00 3.18
72 73 3.004090 GGCCCTTCCCGTTACCAT 58.996 61.111 0.00 0.00 0.00 3.55
82 83 1.143183 TGCGATTCTACGGCCCTTC 59.857 57.895 0.00 0.00 0.00 3.46
99 101 1.564622 CCTATTTCGGCGCATCGTG 59.435 57.895 10.83 0.00 0.00 4.35
108 110 0.931005 GTCTCGCTTGCCTATTTCGG 59.069 55.000 0.00 0.00 0.00 4.30
112 114 0.246635 ACACGTCTCGCTTGCCTATT 59.753 50.000 0.00 0.00 0.00 1.73
123 125 5.408356 ACATTGTGGATTACTACACGTCTC 58.592 41.667 0.00 0.00 40.39 3.36
124 126 5.185249 AGACATTGTGGATTACTACACGTCT 59.815 40.000 0.00 0.00 41.28 4.18
130 132 5.462398 CGCCTTAGACATTGTGGATTACTAC 59.538 44.000 0.00 0.00 0.00 2.73
135 137 2.238646 TCCGCCTTAGACATTGTGGATT 59.761 45.455 0.00 0.00 32.70 3.01
144 146 3.859061 TCTCTCTATCCGCCTTAGACA 57.141 47.619 0.00 0.00 0.00 3.41
152 154 0.594110 CGGTCCTTCTCTCTATCCGC 59.406 60.000 0.00 0.00 0.00 5.54
153 155 2.257691 TCGGTCCTTCTCTCTATCCG 57.742 55.000 0.00 0.00 38.16 4.18
158 160 2.041891 TCTCCTTTCGGTCCTTCTCTCT 59.958 50.000 0.00 0.00 0.00 3.10
181 183 1.488705 CCACTCTACCCCAGCCAACA 61.489 60.000 0.00 0.00 0.00 3.33
182 184 1.299976 CCACTCTACCCCAGCCAAC 59.700 63.158 0.00 0.00 0.00 3.77
187 189 1.949847 CTGTCGCCACTCTACCCCAG 61.950 65.000 0.00 0.00 0.00 4.45
190 192 0.606604 TTTCTGTCGCCACTCTACCC 59.393 55.000 0.00 0.00 0.00 3.69
194 196 2.515854 TCTACTTTCTGTCGCCACTCT 58.484 47.619 0.00 0.00 0.00 3.24
196 198 3.258372 TCAATCTACTTTCTGTCGCCACT 59.742 43.478 0.00 0.00 0.00 4.00
201 203 7.562412 CATAGCAATCAATCTACTTTCTGTCG 58.438 38.462 0.00 0.00 0.00 4.35
204 206 7.255491 TGCATAGCAATCAATCTACTTTCTG 57.745 36.000 0.00 0.00 34.76 3.02
231 233 1.129058 ATACTCCCGATCCGGCTTTT 58.871 50.000 0.00 0.00 46.86 2.27
250 252 3.751479 AATCTAGCATATGTCGTGCCA 57.249 42.857 4.29 0.00 43.50 4.92
283 285 8.449397 GCATGACTATATTTGTCAATGGATCTC 58.551 37.037 12.97 0.00 45.82 2.75
302 304 3.872696 TCGGTCAAATATGTGCATGACT 58.127 40.909 13.85 0.00 41.42 3.41
307 309 4.570930 TGTAACTCGGTCAAATATGTGCA 58.429 39.130 0.00 0.00 0.00 4.57
308 310 5.539582 TTGTAACTCGGTCAAATATGTGC 57.460 39.130 0.00 0.00 0.00 4.57
336 338 7.511268 AGGTGAACTAATTAACACAACAGGTA 58.489 34.615 14.55 0.00 35.33 3.08
410 413 9.842775 ATGAGCACGATATATGGATCAAAATAT 57.157 29.630 1.28 0.00 0.00 1.28
417 420 8.384607 TCTACTATGAGCACGATATATGGATC 57.615 38.462 1.28 0.00 0.00 3.36
419 422 9.274206 GTATCTACTATGAGCACGATATATGGA 57.726 37.037 1.28 0.00 0.00 3.41
451 454 5.997746 CCAGAACTTCAACTATCCTTGAACA 59.002 40.000 0.00 0.00 35.63 3.18
456 459 5.584551 AACCCAGAACTTCAACTATCCTT 57.415 39.130 0.00 0.00 0.00 3.36
458 461 5.070685 ACAAACCCAGAACTTCAACTATCC 58.929 41.667 0.00 0.00 0.00 2.59
480 483 9.701355 CAAACATAAACAAATTTGACTTGGAAC 57.299 29.630 24.64 0.00 34.62 3.62
490 493 7.712797 AGACTCGGTCAAACATAAACAAATTT 58.287 30.769 6.78 0.00 34.60 1.82
493 496 7.972832 ATAGACTCGGTCAAACATAAACAAA 57.027 32.000 6.78 0.00 34.60 2.83
542 545 7.603963 GAAGAAATACTCCCAAGTCTTCTTC 57.396 40.000 17.92 17.92 45.49 2.87
568 571 9.303116 ACCTTCTTCGTGATATCAATCTATACT 57.697 33.333 7.07 0.00 32.93 2.12
569 572 9.347934 CACCTTCTTCGTGATATCAATCTATAC 57.652 37.037 7.07 0.00 32.77 1.47
570 573 9.078990 ACACCTTCTTCGTGATATCAATCTATA 57.921 33.333 7.07 0.00 35.17 1.31
571 574 7.957002 ACACCTTCTTCGTGATATCAATCTAT 58.043 34.615 7.07 0.00 35.17 1.98
572 575 7.348080 ACACCTTCTTCGTGATATCAATCTA 57.652 36.000 7.07 0.00 35.17 1.98
573 576 6.227298 ACACCTTCTTCGTGATATCAATCT 57.773 37.500 7.07 0.00 35.17 2.40
574 577 6.910536 AACACCTTCTTCGTGATATCAATC 57.089 37.500 7.07 0.00 35.17 2.67
575 578 6.316390 GGAAACACCTTCTTCGTGATATCAAT 59.684 38.462 7.07 0.00 35.17 2.57
576 579 5.642063 GGAAACACCTTCTTCGTGATATCAA 59.358 40.000 7.07 0.00 35.17 2.57
577 580 5.175859 GGAAACACCTTCTTCGTGATATCA 58.824 41.667 0.00 0.00 35.17 2.15
578 581 5.175859 TGGAAACACCTTCTTCGTGATATC 58.824 41.667 0.00 0.00 39.86 1.63
579 582 5.160607 TGGAAACACCTTCTTCGTGATAT 57.839 39.130 0.00 0.00 39.86 1.63
580 583 4.610605 TGGAAACACCTTCTTCGTGATA 57.389 40.909 0.00 0.00 39.86 2.15
581 584 3.485463 TGGAAACACCTTCTTCGTGAT 57.515 42.857 0.00 0.00 39.86 3.06
582 585 2.992124 TGGAAACACCTTCTTCGTGA 57.008 45.000 0.00 0.00 39.86 4.35
590 593 3.565307 TGCAATCTCTTGGAAACACCTT 58.435 40.909 0.00 0.00 42.67 3.50
721 724 9.971922 CTCTATGGTTCTTCTGTTTCAATTTTT 57.028 29.630 0.00 0.00 0.00 1.94
722 725 9.354673 TCTCTATGGTTCTTCTGTTTCAATTTT 57.645 29.630 0.00 0.00 0.00 1.82
723 726 8.924511 TCTCTATGGTTCTTCTGTTTCAATTT 57.075 30.769 0.00 0.00 0.00 1.82
724 727 7.120432 GCTCTCTATGGTTCTTCTGTTTCAATT 59.880 37.037 0.00 0.00 0.00 2.32
725 728 6.597280 GCTCTCTATGGTTCTTCTGTTTCAAT 59.403 38.462 0.00 0.00 0.00 2.57
728 731 4.564769 CGCTCTCTATGGTTCTTCTGTTTC 59.435 45.833 0.00 0.00 0.00 2.78
729 732 4.021016 ACGCTCTCTATGGTTCTTCTGTTT 60.021 41.667 0.00 0.00 0.00 2.83
732 735 3.443037 CACGCTCTCTATGGTTCTTCTG 58.557 50.000 0.00 0.00 0.00 3.02
733 736 2.159170 GCACGCTCTCTATGGTTCTTCT 60.159 50.000 0.00 0.00 0.00 2.85
734 737 2.159170 AGCACGCTCTCTATGGTTCTTC 60.159 50.000 0.00 0.00 0.00 2.87
737 740 2.159170 AGAAGCACGCTCTCTATGGTTC 60.159 50.000 7.18 7.18 46.34 3.62
738 741 1.827969 AGAAGCACGCTCTCTATGGTT 59.172 47.619 0.00 0.00 36.79 3.67
740 743 1.599171 CGAGAAGCACGCTCTCTATGG 60.599 57.143 13.13 2.12 0.00 2.74
742 745 1.064803 CACGAGAAGCACGCTCTCTAT 59.935 52.381 13.13 3.39 0.00 1.98
743 746 0.448197 CACGAGAAGCACGCTCTCTA 59.552 55.000 13.13 0.00 0.00 2.43
747 782 3.482783 GGCACGAGAAGCACGCTC 61.483 66.667 0.00 0.00 0.00 5.03
771 806 4.054780 TCGACATAATGTCCAGTAAGGC 57.945 45.455 0.00 0.00 44.20 4.35
779 814 5.475909 TGGTAGGTAGATCGACATAATGTCC 59.524 44.000 8.30 3.66 44.20 4.02
799 834 1.131638 GGCAGATCTCCACCATGGTA 58.868 55.000 19.28 1.36 39.03 3.25
832 2349 7.507733 AATTGCTAGCCAATCAGAAGATTAG 57.492 36.000 13.29 0.00 43.22 1.73
836 2353 6.263842 CCATTAATTGCTAGCCAATCAGAAGA 59.736 38.462 13.29 0.00 43.22 2.87
853 2370 2.031120 CATGGCCCGTCACCATTAATT 58.969 47.619 0.00 0.00 45.86 1.40
878 2395 0.527817 GTGACACCGATCGATCACCC 60.528 60.000 24.40 9.24 36.31 4.61
894 2411 5.106830 CGTATATATAGCCGTGTGAGTGTGA 60.107 44.000 0.00 0.00 0.00 3.58
895 2412 5.086727 CGTATATATAGCCGTGTGAGTGTG 58.913 45.833 0.00 0.00 0.00 3.82
896 2413 4.155462 CCGTATATATAGCCGTGTGAGTGT 59.845 45.833 0.00 0.00 0.00 3.55
897 2414 4.438336 CCCGTATATATAGCCGTGTGAGTG 60.438 50.000 0.00 0.00 0.00 3.51
898 2415 3.693085 CCCGTATATATAGCCGTGTGAGT 59.307 47.826 0.00 0.00 0.00 3.41
899 2416 3.488721 GCCCGTATATATAGCCGTGTGAG 60.489 52.174 0.00 0.00 0.00 3.51
944 2461 3.476552 CCTTTACCAAGTCTTGCTGTGA 58.523 45.455 7.09 0.00 0.00 3.58
955 2472 1.644786 CTTCGGCCGCCTTTACCAAG 61.645 60.000 23.51 12.62 0.00 3.61
965 2482 2.176792 CTTTGCTTCTTCGGCCGC 59.823 61.111 23.51 5.52 0.00 6.53
976 2493 3.063510 TGCAGATTAGTCAGCTTTGCT 57.936 42.857 4.33 0.00 40.77 3.91
999 2516 5.180304 CAGGATGCATCTCTTCATCTTCATG 59.820 44.000 25.28 1.23 39.14 3.07
1084 2613 4.612412 GGTGCCCACGTCGTTGGA 62.612 66.667 19.09 0.60 39.24 3.53
1088 2617 2.358247 GAATGGTGCCCACGTCGT 60.358 61.111 0.00 0.00 35.80 4.34
1094 2623 4.342427 GCATGAGAATGGTGCCCA 57.658 55.556 0.00 0.00 38.19 5.36
1098 2627 1.431488 CGGTCGGCATGAGAATGGTG 61.431 60.000 0.00 0.00 0.00 4.17
1115 2644 2.396157 GCCGTACCTTTGCCTTCGG 61.396 63.158 0.00 0.00 40.72 4.30
1139 2668 0.944386 AAAAGAGTTCACGCACGCAT 59.056 45.000 0.00 0.00 0.00 4.73
1146 2688 5.379732 AGGACTAGAGAAAAGAGTTCACG 57.620 43.478 0.00 0.00 0.00 4.35
1153 2695 9.411189 GAGGTTCTATAAGGACTAGAGAAAAGA 57.589 37.037 0.00 0.00 39.08 2.52
1155 2697 9.716556 ATGAGGTTCTATAAGGACTAGAGAAAA 57.283 33.333 0.00 0.00 39.08 2.29
1159 2701 8.877864 ATGATGAGGTTCTATAAGGACTAGAG 57.122 38.462 0.00 0.00 0.00 2.43
1162 2704 8.004801 TGTGATGATGAGGTTCTATAAGGACTA 58.995 37.037 0.00 0.00 0.00 2.59
1164 2706 7.055667 TGTGATGATGAGGTTCTATAAGGAC 57.944 40.000 0.00 0.00 0.00 3.85
1170 2712 5.071384 TGAGCATGTGATGATGAGGTTCTAT 59.929 40.000 0.00 0.00 0.00 1.98
1173 2715 3.311871 GTGAGCATGTGATGATGAGGTTC 59.688 47.826 0.00 0.00 0.00 3.62
1176 2718 2.872858 CTGTGAGCATGTGATGATGAGG 59.127 50.000 0.00 0.00 0.00 3.86
1179 2721 1.333931 GGCTGTGAGCATGTGATGATG 59.666 52.381 0.00 0.00 44.75 3.07
1219 2761 3.365265 CGTTCCCACTTGCCCTGC 61.365 66.667 0.00 0.00 0.00 4.85
1299 2841 1.827344 TCGTCCAGACAGATGCAGATT 59.173 47.619 0.00 0.00 0.00 2.40
1397 2939 3.892581 CGGGGTCGCCGTAGTACC 61.893 72.222 19.63 0.00 0.00 3.34
1450 2992 2.355481 GAGGGCGTCGTCGTTGTT 60.355 61.111 3.66 0.00 39.49 2.83
1511 3080 2.838360 TGGTGCACAGAGCCATGT 59.162 55.556 20.43 0.00 44.83 3.21
1520 3089 1.682849 GGGTATGACCTGGTGCACA 59.317 57.895 20.43 3.92 38.64 4.57
1521 3090 1.449601 CGGGTATGACCTGGTGCAC 60.450 63.158 8.80 8.80 41.01 4.57
1522 3091 2.986290 CGGGTATGACCTGGTGCA 59.014 61.111 2.82 2.46 41.01 4.57
1523 3092 2.513897 GCGGGTATGACCTGGTGC 60.514 66.667 2.82 0.00 44.90 5.01
1524 3093 2.189521 GGCGGGTATGACCTGGTG 59.810 66.667 2.82 0.00 44.90 4.17
1681 3250 0.248990 TAGTTATTACCGCCGGCGTG 60.249 55.000 43.12 35.06 37.81 5.34
1682 3251 0.031178 CTAGTTATTACCGCCGGCGT 59.969 55.000 43.12 32.53 37.81 5.68
1684 3253 0.249573 TGCTAGTTATTACCGCCGGC 60.250 55.000 19.07 19.07 0.00 6.13
1685 3254 1.494824 GTGCTAGTTATTACCGCCGG 58.505 55.000 0.00 0.00 0.00 6.13
1712 3281 1.063174 GCACTCTTGATGGCGTTGATC 59.937 52.381 0.00 0.00 0.00 2.92
1727 3304 2.229784 CAGGGGAAATTCAAGTGCACTC 59.770 50.000 21.95 5.57 0.00 3.51
1728 3305 2.242043 CAGGGGAAATTCAAGTGCACT 58.758 47.619 15.25 15.25 0.00 4.40
1739 3316 1.208535 CACATTGCATGCAGGGGAAAT 59.791 47.619 21.50 7.52 0.00 2.17
1742 3319 0.542467 AACACATTGCATGCAGGGGA 60.542 50.000 25.03 11.10 0.00 4.81
1744 3321 1.545136 TGTAACACATTGCATGCAGGG 59.455 47.619 21.50 18.55 0.00 4.45
1786 3363 2.059786 CCAGCCGGCCATCCATTTT 61.060 57.895 26.15 0.00 0.00 1.82
1851 3428 4.517832 ACTCGTCATTATTCATGCATGCAT 59.482 37.500 27.46 27.46 37.08 3.96
1852 3429 3.878699 ACTCGTCATTATTCATGCATGCA 59.121 39.130 25.04 25.04 32.13 3.96
1853 3430 4.461405 GACTCGTCATTATTCATGCATGC 58.539 43.478 22.25 11.82 32.13 4.06
1854 3431 4.445385 TCGACTCGTCATTATTCATGCATG 59.555 41.667 21.07 21.07 32.13 4.06
1871 3448 0.734253 AACATGCAGACGCTCGACTC 60.734 55.000 0.00 0.00 39.64 3.36
1904 3481 4.770010 GGGAAGAAAACCACACCATTCATA 59.230 41.667 0.00 0.00 0.00 2.15
1910 3487 0.547075 TCGGGAAGAAAACCACACCA 59.453 50.000 0.00 0.00 0.00 4.17
1922 3499 2.287009 GCAACTTCAACTTGTCGGGAAG 60.287 50.000 0.00 0.00 41.83 3.46
1926 3503 3.303791 GGTAAGCAACTTCAACTTGTCGG 60.304 47.826 0.00 0.00 0.00 4.79
1927 3504 3.311322 TGGTAAGCAACTTCAACTTGTCG 59.689 43.478 0.00 0.00 0.00 4.35
1936 3513 3.058224 GTGGACATGTGGTAAGCAACTTC 60.058 47.826 1.15 0.00 0.00 3.01
1939 3516 1.539827 GGTGGACATGTGGTAAGCAAC 59.460 52.381 1.15 0.00 0.00 4.17
1957 3534 2.832129 ACGATCACACTATTCACCAGGT 59.168 45.455 0.00 0.00 0.00 4.00
1958 3535 3.526931 ACGATCACACTATTCACCAGG 57.473 47.619 0.00 0.00 0.00 4.45
1976 3554 2.600420 CGAGACCATGTGAGATCAAACG 59.400 50.000 0.00 0.00 0.00 3.60
1977 3555 2.349886 GCGAGACCATGTGAGATCAAAC 59.650 50.000 0.00 0.00 0.00 2.93
1982 3560 4.081420 AGTTTTAGCGAGACCATGTGAGAT 60.081 41.667 0.00 0.00 0.00 2.75
1984 3562 3.589988 AGTTTTAGCGAGACCATGTGAG 58.410 45.455 0.00 0.00 0.00 3.51
1987 3565 3.258372 TGAGAGTTTTAGCGAGACCATGT 59.742 43.478 0.00 0.00 0.00 3.21
2024 3602 7.468906 CGAAGTGGGTCTTTTATAGGAGTAGAG 60.469 44.444 0.00 0.00 36.40 2.43
2025 3603 6.320672 CGAAGTGGGTCTTTTATAGGAGTAGA 59.679 42.308 0.00 0.00 36.40 2.59
2027 3605 5.954150 ACGAAGTGGGTCTTTTATAGGAGTA 59.046 40.000 0.00 0.00 42.51 2.59
2031 3609 6.047231 CCTTACGAAGTGGGTCTTTTATAGG 58.953 44.000 0.00 0.00 45.73 2.57
2042 3620 3.053831 ACACAATCCTTACGAAGTGGG 57.946 47.619 0.00 0.00 45.73 4.61
2046 3624 4.508124 GGCAGATACACAATCCTTACGAAG 59.492 45.833 0.00 0.00 34.90 3.79
2049 3627 3.792401 TGGCAGATACACAATCCTTACG 58.208 45.455 0.00 0.00 34.90 3.18
2052 3630 3.745480 CGGATGGCAGATACACAATCCTT 60.745 47.826 0.00 0.00 34.90 3.36
2054 3632 2.146342 CGGATGGCAGATACACAATCC 58.854 52.381 0.00 0.00 34.90 3.01
2058 3636 1.190643 TGACGGATGGCAGATACACA 58.809 50.000 0.00 0.00 0.00 3.72
2061 3639 3.733337 AGAAATGACGGATGGCAGATAC 58.267 45.455 0.00 0.00 0.00 2.24
2063 3641 4.130118 GTTAGAAATGACGGATGGCAGAT 58.870 43.478 0.00 0.00 0.00 2.90
2067 3645 2.354821 GTGGTTAGAAATGACGGATGGC 59.645 50.000 0.00 0.00 0.00 4.40
2081 3659 6.071560 TGTGTTAGATGTAGACAGGTGGTTAG 60.072 42.308 0.00 0.00 0.00 2.34
2083 3661 4.591498 TGTGTTAGATGTAGACAGGTGGTT 59.409 41.667 0.00 0.00 0.00 3.67
2088 3666 3.798878 CGCATGTGTTAGATGTAGACAGG 59.201 47.826 0.00 0.00 0.00 4.00
2091 3669 4.045104 CCTCGCATGTGTTAGATGTAGAC 58.955 47.826 6.09 0.00 0.00 2.59
2092 3670 3.490933 GCCTCGCATGTGTTAGATGTAGA 60.491 47.826 6.09 0.00 0.00 2.59
2093 3671 2.797156 GCCTCGCATGTGTTAGATGTAG 59.203 50.000 6.09 0.00 0.00 2.74
2094 3672 2.167487 TGCCTCGCATGTGTTAGATGTA 59.833 45.455 6.09 0.00 31.71 2.29
2095 3673 1.066215 TGCCTCGCATGTGTTAGATGT 60.066 47.619 6.09 0.00 31.71 3.06
2103 3682 0.585357 GATAGCTTGCCTCGCATGTG 59.415 55.000 0.00 0.00 38.76 3.21
2108 3687 1.303309 AACATGATAGCTTGCCTCGC 58.697 50.000 0.00 0.00 0.00 5.03
2114 3693 7.742963 GTCATTTTGCAAAAACATGATAGCTTG 59.257 33.333 27.10 15.98 0.00 4.01
2120 3699 5.374921 TGGGTCATTTTGCAAAAACATGAT 58.625 33.333 27.10 8.11 0.00 2.45
2125 3704 5.094429 GACATGGGTCATTTTGCAAAAAC 57.906 39.130 27.10 20.66 43.73 2.43
2139 3718 2.436109 GCCACTGGTGACATGGGT 59.564 61.111 0.00 0.00 41.51 4.51
2142 3721 0.796312 GTTACGCCACTGGTGACATG 59.204 55.000 15.85 0.00 41.51 3.21
2143 3722 0.321298 GGTTACGCCACTGGTGACAT 60.321 55.000 15.85 0.00 37.08 3.06
2144 3723 1.070105 GGTTACGCCACTGGTGACA 59.930 57.895 15.85 0.00 36.58 3.58
2145 3724 1.070105 TGGTTACGCCACTGGTGAC 59.930 57.895 15.85 3.89 43.61 3.67
2146 3725 3.552219 TGGTTACGCCACTGGTGA 58.448 55.556 15.85 0.00 43.61 4.02
2201 3780 8.492782 TCTAGTAATAAGGACACTGTAGCTAGT 58.507 37.037 0.00 0.00 0.00 2.57
2202 3781 8.905660 TCTAGTAATAAGGACACTGTAGCTAG 57.094 38.462 0.00 0.00 0.00 3.42
2203 3782 9.339850 CTTCTAGTAATAAGGACACTGTAGCTA 57.660 37.037 0.00 0.00 0.00 3.32
2204 3783 7.835181 ACTTCTAGTAATAAGGACACTGTAGCT 59.165 37.037 0.00 0.00 0.00 3.32
2205 3784 7.998580 ACTTCTAGTAATAAGGACACTGTAGC 58.001 38.462 0.00 0.00 0.00 3.58
2206 3785 9.790389 CAACTTCTAGTAATAAGGACACTGTAG 57.210 37.037 0.00 0.00 0.00 2.74
2207 3786 8.248945 GCAACTTCTAGTAATAAGGACACTGTA 58.751 37.037 0.00 0.00 0.00 2.74
2208 3787 7.038941 AGCAACTTCTAGTAATAAGGACACTGT 60.039 37.037 0.00 0.00 0.00 3.55
2209 3788 7.324178 AGCAACTTCTAGTAATAAGGACACTG 58.676 38.462 0.00 0.00 0.00 3.66
2210 3789 7.483580 AGCAACTTCTAGTAATAAGGACACT 57.516 36.000 0.00 0.00 0.00 3.55
2211 3790 8.248945 TGTAGCAACTTCTAGTAATAAGGACAC 58.751 37.037 0.00 0.00 0.00 3.67
2212 3791 8.357290 TGTAGCAACTTCTAGTAATAAGGACA 57.643 34.615 0.00 0.00 0.00 4.02
2213 3792 8.468399 ACTGTAGCAACTTCTAGTAATAAGGAC 58.532 37.037 0.00 0.00 0.00 3.85
2214 3793 8.591114 ACTGTAGCAACTTCTAGTAATAAGGA 57.409 34.615 0.00 0.00 0.00 3.36
2215 3794 8.467598 TGACTGTAGCAACTTCTAGTAATAAGG 58.532 37.037 0.00 0.00 0.00 2.69
2216 3795 9.856488 TTGACTGTAGCAACTTCTAGTAATAAG 57.144 33.333 0.00 0.00 0.00 1.73
2218 3797 9.803315 CATTGACTGTAGCAACTTCTAGTAATA 57.197 33.333 0.00 0.00 0.00 0.98
2219 3798 8.531982 TCATTGACTGTAGCAACTTCTAGTAAT 58.468 33.333 0.00 0.00 0.00 1.89
2220 3799 7.892609 TCATTGACTGTAGCAACTTCTAGTAA 58.107 34.615 0.00 0.00 0.00 2.24
2221 3800 7.462571 TCATTGACTGTAGCAACTTCTAGTA 57.537 36.000 0.00 0.00 0.00 1.82
2222 3801 6.346477 TCATTGACTGTAGCAACTTCTAGT 57.654 37.500 0.00 0.00 0.00 2.57
2223 3802 7.201591 CCATTCATTGACTGTAGCAACTTCTAG 60.202 40.741 3.66 0.00 0.00 2.43
2224 3803 6.595326 CCATTCATTGACTGTAGCAACTTCTA 59.405 38.462 3.66 0.00 0.00 2.10
2225 3804 5.413833 CCATTCATTGACTGTAGCAACTTCT 59.586 40.000 3.66 0.00 0.00 2.85
2226 3805 5.392380 CCCATTCATTGACTGTAGCAACTTC 60.392 44.000 3.66 0.00 0.00 3.01
2227 3806 4.460382 CCCATTCATTGACTGTAGCAACTT 59.540 41.667 3.66 0.00 0.00 2.66
2228 3807 4.012374 CCCATTCATTGACTGTAGCAACT 58.988 43.478 3.66 0.00 0.00 3.16
2229 3808 3.758554 ACCCATTCATTGACTGTAGCAAC 59.241 43.478 3.66 0.00 0.00 4.17
2230 3809 3.758023 CACCCATTCATTGACTGTAGCAA 59.242 43.478 3.66 0.00 0.00 3.91
2231 3810 3.346315 CACCCATTCATTGACTGTAGCA 58.654 45.455 3.66 0.00 0.00 3.49
2232 3811 2.684881 CCACCCATTCATTGACTGTAGC 59.315 50.000 3.66 0.00 0.00 3.58
2233 3812 4.220693 TCCACCCATTCATTGACTGTAG 57.779 45.455 3.66 0.00 0.00 2.74
2234 3813 4.860802 ATCCACCCATTCATTGACTGTA 57.139 40.909 3.66 0.00 0.00 2.74
2235 3814 3.744940 ATCCACCCATTCATTGACTGT 57.255 42.857 3.66 0.00 0.00 3.55
2236 3815 3.567164 GCTATCCACCCATTCATTGACTG 59.433 47.826 0.00 0.00 0.00 3.51
2237 3816 3.435601 GGCTATCCACCCATTCATTGACT 60.436 47.826 0.00 0.00 0.00 3.41
2238 3817 2.887152 GGCTATCCACCCATTCATTGAC 59.113 50.000 0.00 0.00 0.00 3.18
2239 3818 2.513317 TGGCTATCCACCCATTCATTGA 59.487 45.455 0.00 0.00 37.47 2.57
2240 3819 2.948115 TGGCTATCCACCCATTCATTG 58.052 47.619 0.00 0.00 37.47 2.82
2251 3830 3.860605 ATGCGGCGTGGCTATCCA 61.861 61.111 9.37 0.00 40.85 3.41
2252 3831 3.349006 CATGCGGCGTGGCTATCC 61.349 66.667 14.37 0.00 0.00 2.59
2253 3832 4.017877 GCATGCGGCGTGGCTATC 62.018 66.667 22.58 2.85 0.00 2.08
2263 3842 4.584518 TAGGGCCATGGCATGCGG 62.585 66.667 36.56 10.71 44.11 5.69
2264 3843 2.981909 CTAGGGCCATGGCATGCG 60.982 66.667 36.56 18.55 44.11 4.73
2265 3844 0.178992 TAACTAGGGCCATGGCATGC 60.179 55.000 36.56 20.19 44.11 4.06
2266 3845 1.609208 GTAACTAGGGCCATGGCATG 58.391 55.000 36.56 23.70 44.11 4.06
2267 3846 0.478507 GGTAACTAGGGCCATGGCAT 59.521 55.000 36.56 26.26 44.11 4.40
2268 3847 1.919771 GGTAACTAGGGCCATGGCA 59.080 57.895 36.56 16.97 44.11 4.92
2269 3848 4.900815 GGTAACTAGGGCCATGGC 57.099 61.111 29.47 29.47 41.06 4.40
2281 3860 2.062177 TAGCCAGGCCCGAGGTAAC 61.062 63.158 8.22 0.00 0.00 2.50
2282 3861 2.062177 GTAGCCAGGCCCGAGGTAA 61.062 63.158 8.22 0.00 0.00 2.85
2283 3862 2.443390 GTAGCCAGGCCCGAGGTA 60.443 66.667 8.22 0.00 0.00 3.08
2284 3863 4.400251 AGTAGCCAGGCCCGAGGT 62.400 66.667 8.22 0.00 0.00 3.85
2285 3864 3.541713 GAGTAGCCAGGCCCGAGG 61.542 72.222 8.22 0.00 0.00 4.63
2286 3865 3.541713 GGAGTAGCCAGGCCCGAG 61.542 72.222 8.22 0.00 36.34 4.63
2289 3868 4.825679 AGGGGAGTAGCCAGGCCC 62.826 72.222 8.22 1.06 38.95 5.80
2290 3869 3.483869 CAGGGGAGTAGCCAGGCC 61.484 72.222 8.22 0.00 38.95 5.19
2291 3870 4.182433 GCAGGGGAGTAGCCAGGC 62.182 72.222 1.84 1.84 38.95 4.85
2296 3875 4.182433 GGCAGGCAGGGGAGTAGC 62.182 72.222 0.00 0.00 0.00 3.58
2297 3876 1.639635 AATGGCAGGCAGGGGAGTAG 61.640 60.000 1.89 0.00 0.00 2.57
2298 3877 1.214305 AAATGGCAGGCAGGGGAGTA 61.214 55.000 1.89 0.00 0.00 2.59
2299 3878 2.097978 AAAATGGCAGGCAGGGGAGT 62.098 55.000 1.89 0.00 0.00 3.85
2300 3879 1.305549 AAAATGGCAGGCAGGGGAG 60.306 57.895 1.89 0.00 0.00 4.30
2301 3880 1.610086 CAAAATGGCAGGCAGGGGA 60.610 57.895 1.89 0.00 0.00 4.81
2302 3881 0.979187 ATCAAAATGGCAGGCAGGGG 60.979 55.000 1.89 0.00 0.00 4.79
2303 3882 0.462789 GATCAAAATGGCAGGCAGGG 59.537 55.000 1.89 0.00 0.00 4.45
2304 3883 1.481871 AGATCAAAATGGCAGGCAGG 58.518 50.000 1.89 0.00 0.00 4.85
2305 3884 6.585695 AATATAGATCAAAATGGCAGGCAG 57.414 37.500 1.89 0.00 0.00 4.85
2306 3885 6.739286 GCAAATATAGATCAAAATGGCAGGCA 60.739 38.462 0.00 0.00 0.00 4.75
2307 3886 5.636543 GCAAATATAGATCAAAATGGCAGGC 59.363 40.000 0.00 0.00 0.00 4.85
2315 3894 8.257306 GGGGTTCTTTGCAAATATAGATCAAAA 58.743 33.333 13.23 0.00 0.00 2.44
2316 3895 7.619302 AGGGGTTCTTTGCAAATATAGATCAAA 59.381 33.333 13.23 0.00 0.00 2.69
2317 3896 7.125391 AGGGGTTCTTTGCAAATATAGATCAA 58.875 34.615 13.23 0.00 0.00 2.57
2320 3899 8.282256 ACTAAGGGGTTCTTTGCAAATATAGAT 58.718 33.333 13.23 0.00 36.93 1.98
2325 3904 5.887754 AGACTAAGGGGTTCTTTGCAAATA 58.112 37.500 13.23 2.14 36.93 1.40
2333 3912 7.628501 TTTCTAAAGAGACTAAGGGGTTCTT 57.371 36.000 0.00 0.00 39.40 2.52
2335 3914 7.853299 AGATTTCTAAAGAGACTAAGGGGTTC 58.147 38.462 0.00 0.00 0.00 3.62
2340 3919 7.102847 ACGGAGATTTCTAAAGAGACTAAGG 57.897 40.000 0.00 0.00 0.00 2.69
2341 3920 7.703197 GGAACGGAGATTTCTAAAGAGACTAAG 59.297 40.741 0.00 0.00 0.00 2.18
2351 3930 2.770232 GGGGAGGAACGGAGATTTCTAA 59.230 50.000 0.00 0.00 0.00 2.10
2352 3931 2.292653 TGGGGAGGAACGGAGATTTCTA 60.293 50.000 0.00 0.00 0.00 2.10
2356 3935 1.132500 GATGGGGAGGAACGGAGATT 58.868 55.000 0.00 0.00 0.00 2.40
2360 3939 3.467226 GCGATGGGGAGGAACGGA 61.467 66.667 0.00 0.00 0.00 4.69
2362 3941 1.595382 GATGCGATGGGGAGGAACG 60.595 63.158 0.00 0.00 0.00 3.95
2365 3944 1.278302 TTTGGATGCGATGGGGAGGA 61.278 55.000 0.00 0.00 0.00 3.71
2372 3951 8.800231 TTTTTCATATATGTTTGGATGCGATG 57.200 30.769 12.42 0.00 0.00 3.84
2390 3969 8.922237 AGGTTTTGCCCAAAATTTATTTTTCAT 58.078 25.926 9.16 0.00 41.64 2.57
2391 3970 8.298729 AGGTTTTGCCCAAAATTTATTTTTCA 57.701 26.923 9.16 0.00 41.64 2.69
2394 3973 9.190317 TGTTAGGTTTTGCCCAAAATTTATTTT 57.810 25.926 9.16 0.00 41.64 1.82
2395 3974 8.753497 TGTTAGGTTTTGCCCAAAATTTATTT 57.247 26.923 9.16 0.00 41.64 1.40
2396 3975 8.932434 ATGTTAGGTTTTGCCCAAAATTTATT 57.068 26.923 9.16 0.00 41.64 1.40
2397 3976 9.443323 GTATGTTAGGTTTTGCCCAAAATTTAT 57.557 29.630 9.16 3.12 41.64 1.40
2398 3977 8.652290 AGTATGTTAGGTTTTGCCCAAAATTTA 58.348 29.630 9.16 3.56 41.64 1.40
2399 3978 7.513856 AGTATGTTAGGTTTTGCCCAAAATTT 58.486 30.769 9.16 4.36 41.64 1.82
2400 3979 7.073457 AGTATGTTAGGTTTTGCCCAAAATT 57.927 32.000 9.16 4.65 41.64 1.82
2401 3980 6.680148 AGTATGTTAGGTTTTGCCCAAAAT 57.320 33.333 9.16 0.00 41.64 1.82
2441 4020 8.807948 TCTAGAGAAAATCACCCTATTTTTGG 57.192 34.615 0.00 0.00 38.77 3.28
2442 4021 9.454859 ACTCTAGAGAAAATCACCCTATTTTTG 57.545 33.333 26.57 0.00 38.77 2.44
2446 4028 9.440761 ACATACTCTAGAGAAAATCACCCTATT 57.559 33.333 26.57 0.93 0.00 1.73
2473 4055 9.852091 GGATGCAAGATAGGATAATGAATTTTC 57.148 33.333 0.00 0.00 0.00 2.29
2476 4058 7.170965 ACGGATGCAAGATAGGATAATGAATT 58.829 34.615 0.00 0.00 0.00 2.17
2477 4059 6.715280 ACGGATGCAAGATAGGATAATGAAT 58.285 36.000 0.00 0.00 0.00 2.57
2478 4060 6.114187 ACGGATGCAAGATAGGATAATGAA 57.886 37.500 0.00 0.00 0.00 2.57
2479 4061 5.745312 ACGGATGCAAGATAGGATAATGA 57.255 39.130 0.00 0.00 0.00 2.57
2480 4062 6.174451 CAACGGATGCAAGATAGGATAATG 57.826 41.667 0.00 0.00 0.00 1.90
2501 4083 1.954362 AAAGTGCCCTTGCGTTGCAA 61.954 50.000 0.00 0.00 46.80 4.08
2594 4176 1.507140 GTGGGGGTGTGATCCTGATA 58.493 55.000 0.00 0.00 0.00 2.15
2599 4181 1.303282 GAAGGTGGGGGTGTGATCC 59.697 63.158 0.00 0.00 0.00 3.36
2600 4182 0.625849 ATGAAGGTGGGGGTGTGATC 59.374 55.000 0.00 0.00 0.00 2.92
2607 4193 1.627864 AACGAAAATGAAGGTGGGGG 58.372 50.000 0.00 0.00 0.00 5.40
2611 4197 4.766404 AAGCCTAACGAAAATGAAGGTG 57.234 40.909 0.00 0.00 0.00 4.00
2613 4199 4.385748 GCAAAAGCCTAACGAAAATGAAGG 59.614 41.667 0.00 0.00 0.00 3.46
2624 4210 5.734855 TCGATCATTAGCAAAAGCCTAAC 57.265 39.130 0.00 0.00 0.00 2.34
2628 4214 2.355756 TGCTCGATCATTAGCAAAAGCC 59.644 45.455 10.94 0.00 45.36 4.35
2629 4215 3.680642 TGCTCGATCATTAGCAAAAGC 57.319 42.857 10.94 0.00 45.36 3.51
2637 4223 7.857734 TTAAAAATCAGGTGCTCGATCATTA 57.142 32.000 0.00 0.00 0.00 1.90
2642 4228 7.649306 GCATTAATTAAAAATCAGGTGCTCGAT 59.351 33.333 1.21 0.00 0.00 3.59
2643 4229 6.972328 GCATTAATTAAAAATCAGGTGCTCGA 59.028 34.615 1.21 0.00 0.00 4.04
2645 4231 7.041107 TGGCATTAATTAAAAATCAGGTGCTC 58.959 34.615 13.10 6.80 0.00 4.26
2646 4232 6.945218 TGGCATTAATTAAAAATCAGGTGCT 58.055 32.000 13.10 0.00 0.00 4.40
2660 4246 5.920903 CCATGGATTTGACTGGCATTAATT 58.079 37.500 5.56 0.00 0.00 1.40
2661 4247 5.540400 CCATGGATTTGACTGGCATTAAT 57.460 39.130 5.56 0.00 0.00 1.40
2668 4256 1.843368 ACAGCCATGGATTTGACTGG 58.157 50.000 18.40 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.