Multiple sequence alignment - TraesCS3A01G045800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G045800 chr3A 100.000 3383 0 0 1 3383 24596937 24600319 0.000000e+00 6248.0
1 TraesCS3A01G045800 chr3A 84.263 1900 276 17 643 2523 24605978 24607873 0.000000e+00 1831.0
2 TraesCS3A01G045800 chr3A 89.655 58 6 0 2685 2742 24608178 24608235 1.300000e-09 75.0
3 TraesCS3A01G045800 chr3D 89.466 2041 196 5 641 2680 12723954 12725976 0.000000e+00 2560.0
4 TraesCS3A01G045800 chr3D 88.008 2068 235 10 627 2688 12807995 12805935 0.000000e+00 2433.0
5 TraesCS3A01G045800 chr3D 87.397 2055 228 19 641 2688 12751425 12749395 0.000000e+00 2331.0
6 TraesCS3A01G045800 chr3D 87.056 2055 230 14 641 2688 12802114 12800089 0.000000e+00 2289.0
7 TraesCS3A01G045800 chr3D 85.459 2070 260 29 627 2688 12553719 12551683 0.000000e+00 2117.0
8 TraesCS3A01G045800 chr3D 85.202 1980 259 25 643 2593 12505236 12503262 0.000000e+00 2002.0
9 TraesCS3A01G045800 chr3D 80.100 2005 366 26 662 2644 12633863 12635856 0.000000e+00 1461.0
10 TraesCS3A01G045800 chr3D 86.035 1246 161 9 627 1867 12703731 12704968 0.000000e+00 1325.0
11 TraesCS3A01G045800 chr3D 86.014 286 25 12 3069 3341 12719323 12719606 3.300000e-75 292.0
12 TraesCS3A01G045800 chr3D 81.194 335 44 10 3066 3383 12509278 12508946 5.600000e-63 252.0
13 TraesCS3A01G045800 chr3D 91.597 119 8 2 2911 3027 12509566 12509448 2.700000e-36 163.0
14 TraesCS3A01G045800 chr3D 96.667 60 2 0 2685 2744 12502744 12502685 2.150000e-17 100.0
15 TraesCS3A01G045800 chr3D 96.364 55 1 1 2685 2738 12805865 12805811 4.650000e-14 89.8
16 TraesCS3A01G045800 chr5B 79.582 2008 369 32 638 2618 19672615 19674608 0.000000e+00 1399.0
17 TraesCS3A01G045800 chr5B 76.193 1613 328 45 653 2244 20811752 20810175 0.000000e+00 800.0
18 TraesCS3A01G045800 chr5B 83.240 889 126 16 1766 2638 19678065 19678946 0.000000e+00 795.0
19 TraesCS3A01G045800 chr5A 80.012 1681 289 37 638 2299 18790332 18791984 0.000000e+00 1199.0
20 TraesCS3A01G045800 chr5A 96.979 629 10 4 1 627 622362395 622363016 0.000000e+00 1048.0
21 TraesCS3A01G045800 chr5A 100.000 37 0 0 2753 2789 573784364 573784328 6.060000e-08 69.4
22 TraesCS3A01G045800 chr7A 99.203 627 5 0 1 627 7980080 7980706 0.000000e+00 1131.0
23 TraesCS3A01G045800 chr7A 98.728 629 6 2 1 627 28167327 28167955 0.000000e+00 1116.0
24 TraesCS3A01G045800 chr7A 98.567 628 6 3 1 627 636128659 636128034 0.000000e+00 1107.0
25 TraesCS3A01G045800 chr7A 98.405 627 9 1 1 627 8118080 8118705 0.000000e+00 1101.0
26 TraesCS3A01G045800 chr7A 97.129 627 11 4 1 627 731629478 731630097 0.000000e+00 1051.0
27 TraesCS3A01G045800 chr7A 94.872 39 0 1 2753 2789 15817531 15817493 3.650000e-05 60.2
28 TraesCS3A01G045800 chr6A 98.410 629 7 3 1 627 573034187 573034814 0.000000e+00 1103.0
29 TraesCS3A01G045800 chr1A 97.771 628 8 4 1 627 536941500 536940878 0.000000e+00 1077.0
30 TraesCS3A01G045800 chr1A 97.368 38 0 1 2753 2789 47809463 47809426 2.820000e-06 63.9
31 TraesCS3A01G045800 chr1A 97.143 35 1 0 2753 2787 282669414 282669448 3.650000e-05 60.2
32 TraesCS3A01G045800 chr3B 94.427 628 26 6 1 628 774132650 774132032 0.000000e+00 957.0
33 TraesCS3A01G045800 chr3B 100.000 34 0 0 2759 2792 773519519 773519552 2.820000e-06 63.9
34 TraesCS3A01G045800 chr5D 77.640 1288 267 15 638 1916 27438412 27439687 0.000000e+00 763.0
35 TraesCS3A01G045800 chr5D 97.297 37 1 0 2753 2789 402965181 402965217 2.820000e-06 63.9
36 TraesCS3A01G045800 chr6D 87.302 126 6 4 2790 2914 466905467 466905351 5.890000e-28 135.0
37 TraesCS3A01G045800 chr1D 97.222 36 1 0 2753 2788 477232772 477232807 1.010000e-05 62.1
38 TraesCS3A01G045800 chr7B 94.737 38 0 1 2753 2788 694813987 694813950 1.310000e-04 58.4
39 TraesCS3A01G045800 chr7B 94.737 38 0 1 2753 2788 695290856 695290893 1.310000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G045800 chr3A 24596937 24600319 3382 False 6248.000000 6248 100.000 1 3383 1 chr3A.!!$F1 3382
1 TraesCS3A01G045800 chr3A 24605978 24608235 2257 False 953.000000 1831 86.959 643 2742 2 chr3A.!!$F2 2099
2 TraesCS3A01G045800 chr3D 12723954 12725976 2022 False 2560.000000 2560 89.466 641 2680 1 chr3D.!!$F4 2039
3 TraesCS3A01G045800 chr3D 12749395 12751425 2030 True 2331.000000 2331 87.397 641 2688 1 chr3D.!!$R2 2047
4 TraesCS3A01G045800 chr3D 12551683 12553719 2036 True 2117.000000 2117 85.459 627 2688 1 chr3D.!!$R1 2061
5 TraesCS3A01G045800 chr3D 12800089 12807995 7906 True 1603.933333 2433 90.476 627 2738 3 chr3D.!!$R4 2111
6 TraesCS3A01G045800 chr3D 12633863 12635856 1993 False 1461.000000 1461 80.100 662 2644 1 chr3D.!!$F1 1982
7 TraesCS3A01G045800 chr3D 12703731 12704968 1237 False 1325.000000 1325 86.035 627 1867 1 chr3D.!!$F2 1240
8 TraesCS3A01G045800 chr3D 12502685 12509566 6881 True 629.250000 2002 88.665 643 3383 4 chr3D.!!$R3 2740
9 TraesCS3A01G045800 chr5B 19672615 19678946 6331 False 1097.000000 1399 81.411 638 2638 2 chr5B.!!$F1 2000
10 TraesCS3A01G045800 chr5B 20810175 20811752 1577 True 800.000000 800 76.193 653 2244 1 chr5B.!!$R1 1591
11 TraesCS3A01G045800 chr5A 18790332 18791984 1652 False 1199.000000 1199 80.012 638 2299 1 chr5A.!!$F1 1661
12 TraesCS3A01G045800 chr5A 622362395 622363016 621 False 1048.000000 1048 96.979 1 627 1 chr5A.!!$F2 626
13 TraesCS3A01G045800 chr7A 7980080 7980706 626 False 1131.000000 1131 99.203 1 627 1 chr7A.!!$F1 626
14 TraesCS3A01G045800 chr7A 28167327 28167955 628 False 1116.000000 1116 98.728 1 627 1 chr7A.!!$F3 626
15 TraesCS3A01G045800 chr7A 636128034 636128659 625 True 1107.000000 1107 98.567 1 627 1 chr7A.!!$R2 626
16 TraesCS3A01G045800 chr7A 8118080 8118705 625 False 1101.000000 1101 98.405 1 627 1 chr7A.!!$F2 626
17 TraesCS3A01G045800 chr7A 731629478 731630097 619 False 1051.000000 1051 97.129 1 627 1 chr7A.!!$F4 626
18 TraesCS3A01G045800 chr6A 573034187 573034814 627 False 1103.000000 1103 98.410 1 627 1 chr6A.!!$F1 626
19 TraesCS3A01G045800 chr1A 536940878 536941500 622 True 1077.000000 1077 97.771 1 627 1 chr1A.!!$R2 626
20 TraesCS3A01G045800 chr3B 774132032 774132650 618 True 957.000000 957 94.427 1 628 1 chr3B.!!$R1 627
21 TraesCS3A01G045800 chr5D 27438412 27439687 1275 False 763.000000 763 77.640 638 1916 1 chr5D.!!$F1 1278

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 4541 0.675837 GCCCTCCCTTTACGTTGGAC 60.676 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2777 12954 0.108186 TGTATTCAGCAGTGGCGGAG 60.108 55.0 0.0 0.0 44.91 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
734 4423 9.225682 TCTGGACCTAAGGAACAATAGATTTAT 57.774 33.333 0.00 0.00 0.00 1.40
832 4521 7.884877 TGAAGATTGTACTGAATTCAGATTGGT 59.115 33.333 36.15 19.79 46.59 3.67
852 4541 0.675837 GCCCTCCCTTTACGTTGGAC 60.676 60.000 0.00 0.00 0.00 4.02
879 4568 3.071874 TGGTTTCGATCTTGCCAGATT 57.928 42.857 1.22 0.00 40.14 2.40
888 4577 1.988107 TCTTGCCAGATTGGTCCTCTT 59.012 47.619 0.00 0.00 40.46 2.85
948 4640 2.618241 TGACATTTCAAGCAACGCTCTT 59.382 40.909 0.00 0.00 38.25 2.85
976 4668 4.168760 CGAGATTTCTGATTGGTTTTGGC 58.831 43.478 0.00 0.00 0.00 4.52
1062 4754 1.340248 CATCTGGATGGCATGGCTTTC 59.660 52.381 21.08 13.55 35.24 2.62
1065 4757 0.106569 TGGATGGCATGGCTTTCGAT 60.107 50.000 21.08 4.68 0.00 3.59
1066 4758 0.595095 GGATGGCATGGCTTTCGATC 59.405 55.000 21.08 13.62 0.00 3.69
1068 4760 1.266175 GATGGCATGGCTTTCGATCAG 59.734 52.381 21.08 0.00 0.00 2.90
1083 4775 3.818210 TCGATCAGCTCTATCTCAGTTCC 59.182 47.826 0.00 0.00 0.00 3.62
1087 4779 4.348486 TCAGCTCTATCTCAGTTCCAACT 58.652 43.478 0.00 0.00 40.60 3.16
1292 4984 8.786826 AAGTATCTGGATTTGTCGAACAATAA 57.213 30.769 0.00 0.00 38.00 1.40
1304 4996 4.013728 TCGAACAATAATTTGGAGGGTGG 58.986 43.478 0.00 0.00 37.15 4.61
1377 5069 7.986889 AGCAACAACAGTTTATCAGGAAAAATT 59.013 29.630 0.00 0.00 0.00 1.82
1402 5094 5.266242 CAGCACTTTTAGAGAACAACACAC 58.734 41.667 0.00 0.00 0.00 3.82
1462 5154 5.549228 TCTGGAAGATTGCCTACATGGATAT 59.451 40.000 0.00 0.00 38.67 1.63
1547 5239 1.658968 GACGTAACAAAGCTTGTGCG 58.341 50.000 0.00 6.86 44.59 5.34
1564 5256 2.423538 GTGCGCCTTCAATACTTGGATT 59.576 45.455 4.18 0.00 0.00 3.01
1622 5314 6.811665 TGTCATCTGTCGAACCTAACATTTAG 59.188 38.462 0.00 0.00 0.00 1.85
1665 5357 9.509855 GAATACATGGATACGTATGATCTTCTC 57.490 37.037 13.97 0.00 42.51 2.87
1680 5381 4.271807 TCTTCTCCTACATGATCCCAGT 57.728 45.455 0.00 0.00 0.00 4.00
2183 11749 0.376502 GATCTCGAAAGCAGCAAGGC 59.623 55.000 0.00 0.00 0.00 4.35
2193 11759 1.544691 AGCAGCAAGGCAGAATTTGAG 59.455 47.619 0.00 0.00 35.83 3.02
2241 11807 1.229177 GGGATTTGTGGTGGGGCTT 60.229 57.895 0.00 0.00 0.00 4.35
2291 11857 5.182570 TCAAGAAGACATGGAGAATTGCTTG 59.817 40.000 0.00 0.00 0.00 4.01
2369 11935 2.407090 GGCAAGCTTCGCAAAGAAAAT 58.593 42.857 18.36 0.00 38.57 1.82
2379 11945 6.467364 GCTTCGCAAAGAAAATAGATGAAGAC 59.533 38.462 0.00 0.00 38.57 3.01
2412 11980 7.844493 TTCTCTTAAGGAGGTAGTGTTTGTA 57.156 36.000 1.85 0.00 42.10 2.41
2420 11988 3.128349 AGGTAGTGTTTGTACTGCAACG 58.872 45.455 0.00 0.00 36.72 4.10
2489 12188 5.408299 TCCAGCAACATATGTTATATCGTGC 59.592 40.000 20.39 17.60 36.32 5.34
2539 12270 4.982295 TGAAGATGTCTAGTTGTTGTGACG 59.018 41.667 0.00 0.00 32.64 4.35
2591 12330 6.428083 TTGTGGTAAATGTAAGACCTCAGA 57.572 37.500 0.00 0.00 37.85 3.27
2607 12346 9.793259 AAGACCTCAGAATTGTTTAGTTATTCA 57.207 29.630 0.00 0.00 32.11 2.57
2744 12921 8.480643 AAACTTGTAGCTGTAATCTGTGATAC 57.519 34.615 0.00 0.00 0.00 2.24
2745 12922 7.411486 ACTTGTAGCTGTAATCTGTGATACT 57.589 36.000 0.00 0.00 0.00 2.12
2747 12924 8.314751 ACTTGTAGCTGTAATCTGTGATACTTT 58.685 33.333 0.00 0.00 0.00 2.66
2748 12925 9.803315 CTTGTAGCTGTAATCTGTGATACTTTA 57.197 33.333 0.00 0.00 0.00 1.85
2752 12929 8.894768 AGCTGTAATCTGTGATACTTTATTCC 57.105 34.615 0.00 0.00 0.00 3.01
2753 12930 8.486210 AGCTGTAATCTGTGATACTTTATTCCA 58.514 33.333 0.00 0.00 0.00 3.53
2754 12931 8.768955 GCTGTAATCTGTGATACTTTATTCCAG 58.231 37.037 0.00 0.00 0.00 3.86
2756 12933 6.851222 AATCTGTGATACTTTATTCCAGCG 57.149 37.500 0.00 0.00 0.00 5.18
2757 12934 4.693283 TCTGTGATACTTTATTCCAGCGG 58.307 43.478 0.00 0.00 0.00 5.52
2758 12935 3.202906 TGTGATACTTTATTCCAGCGGC 58.797 45.455 0.00 0.00 0.00 6.53
2759 12936 2.548480 GTGATACTTTATTCCAGCGGCC 59.452 50.000 0.00 0.00 0.00 6.13
2760 12937 2.152016 GATACTTTATTCCAGCGGCCC 58.848 52.381 0.00 0.00 0.00 5.80
2762 12939 1.828224 CTTTATTCCAGCGGCCCCC 60.828 63.158 0.00 0.00 0.00 5.40
2764 12941 2.566111 TTTATTCCAGCGGCCCCCTG 62.566 60.000 10.40 10.40 0.00 4.45
2775 12952 3.026847 CCCCCTGGCCCCAACATA 61.027 66.667 0.00 0.00 0.00 2.29
2776 12953 2.603008 CCCCTGGCCCCAACATAG 59.397 66.667 0.00 0.00 0.00 2.23
2777 12954 2.123726 CCCTGGCCCCAACATAGC 60.124 66.667 0.00 0.00 0.00 2.97
2778 12955 2.693871 CCCTGGCCCCAACATAGCT 61.694 63.158 0.00 0.00 0.00 3.32
2779 12956 1.152881 CCTGGCCCCAACATAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
2780 12957 1.152881 CTGGCCCCAACATAGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
2781 12958 2.203209 GGCCCCAACATAGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
2782 12959 2.902343 GCCCCAACATAGCTCCGC 60.902 66.667 0.00 0.00 0.00 5.54
2783 12960 2.203209 CCCCAACATAGCTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
2784 12961 2.589540 CCCAACATAGCTCCGCCA 59.410 61.111 0.00 0.00 0.00 5.69
2785 12962 1.819632 CCCAACATAGCTCCGCCAC 60.820 63.158 0.00 0.00 0.00 5.01
2786 12963 1.221840 CCAACATAGCTCCGCCACT 59.778 57.895 0.00 0.00 0.00 4.00
2787 12964 1.091771 CCAACATAGCTCCGCCACTG 61.092 60.000 0.00 0.00 0.00 3.66
2788 12965 1.450312 AACATAGCTCCGCCACTGC 60.450 57.895 0.00 0.00 0.00 4.40
2789 12966 1.903877 AACATAGCTCCGCCACTGCT 61.904 55.000 0.00 0.00 40.43 4.24
2790 12967 1.886313 CATAGCTCCGCCACTGCTG 60.886 63.158 0.00 0.00 37.62 4.41
2791 12968 2.060383 ATAGCTCCGCCACTGCTGA 61.060 57.895 0.00 0.00 37.62 4.26
2792 12969 1.617018 ATAGCTCCGCCACTGCTGAA 61.617 55.000 0.00 0.00 37.62 3.02
2793 12970 1.617018 TAGCTCCGCCACTGCTGAAT 61.617 55.000 0.00 0.00 37.62 2.57
2794 12971 1.153369 GCTCCGCCACTGCTGAATA 60.153 57.895 0.00 0.00 34.43 1.75
2795 12972 1.432270 GCTCCGCCACTGCTGAATAC 61.432 60.000 0.00 0.00 34.43 1.89
2796 12973 0.108186 CTCCGCCACTGCTGAATACA 60.108 55.000 0.00 0.00 34.43 2.29
2797 12974 0.323302 TCCGCCACTGCTGAATACAA 59.677 50.000 0.00 0.00 34.43 2.41
2798 12975 0.447801 CCGCCACTGCTGAATACAAC 59.552 55.000 0.00 0.00 34.43 3.32
2799 12976 1.442769 CGCCACTGCTGAATACAACT 58.557 50.000 0.00 0.00 34.43 3.16
2800 12977 2.616960 CGCCACTGCTGAATACAACTA 58.383 47.619 0.00 0.00 34.43 2.24
2801 12978 3.000041 CGCCACTGCTGAATACAACTAA 59.000 45.455 0.00 0.00 34.43 2.24
2802 12979 3.435327 CGCCACTGCTGAATACAACTAAA 59.565 43.478 0.00 0.00 34.43 1.85
2803 12980 4.436050 CGCCACTGCTGAATACAACTAAAG 60.436 45.833 0.00 0.00 34.43 1.85
2804 12981 4.142600 GCCACTGCTGAATACAACTAAAGG 60.143 45.833 0.00 0.00 33.53 3.11
2805 12982 5.003804 CCACTGCTGAATACAACTAAAGGT 58.996 41.667 0.00 0.00 0.00 3.50
2806 12983 5.106555 CCACTGCTGAATACAACTAAAGGTG 60.107 44.000 0.00 0.00 0.00 4.00
2807 12984 5.003804 ACTGCTGAATACAACTAAAGGTGG 58.996 41.667 0.00 0.00 0.00 4.61
2808 12985 3.756434 TGCTGAATACAACTAAAGGTGGC 59.244 43.478 0.00 0.00 0.00 5.01
2809 12986 3.128764 GCTGAATACAACTAAAGGTGGCC 59.871 47.826 0.00 0.00 0.00 5.36
2810 12987 3.340034 TGAATACAACTAAAGGTGGCCG 58.660 45.455 0.00 0.00 0.00 6.13
2811 12988 3.008157 TGAATACAACTAAAGGTGGCCGA 59.992 43.478 0.00 0.00 0.00 5.54
2812 12989 3.926058 ATACAACTAAAGGTGGCCGAT 57.074 42.857 0.00 0.00 0.00 4.18
2813 12990 1.821216 ACAACTAAAGGTGGCCGATG 58.179 50.000 0.00 0.00 0.00 3.84
2814 12991 1.349688 ACAACTAAAGGTGGCCGATGA 59.650 47.619 0.00 0.00 0.00 2.92
2815 12992 2.009774 CAACTAAAGGTGGCCGATGAG 58.990 52.381 0.00 0.00 0.00 2.90
2816 12993 0.541863 ACTAAAGGTGGCCGATGAGG 59.458 55.000 0.00 0.00 44.97 3.86
2834 13011 2.456000 GCGATGAGCGGACAAAAGA 58.544 52.632 0.00 0.00 41.29 2.52
2835 13012 0.371645 GCGATGAGCGGACAAAAGAG 59.628 55.000 0.00 0.00 41.29 2.85
2836 13013 1.714794 CGATGAGCGGACAAAAGAGT 58.285 50.000 0.00 0.00 36.03 3.24
2837 13014 2.069273 CGATGAGCGGACAAAAGAGTT 58.931 47.619 0.00 0.00 36.03 3.01
2838 13015 2.159787 CGATGAGCGGACAAAAGAGTTG 60.160 50.000 0.00 0.00 36.03 3.16
2839 13016 2.613026 TGAGCGGACAAAAGAGTTGA 57.387 45.000 0.00 0.00 0.00 3.18
2840 13017 2.912771 TGAGCGGACAAAAGAGTTGAA 58.087 42.857 0.00 0.00 0.00 2.69
2841 13018 3.476552 TGAGCGGACAAAAGAGTTGAAT 58.523 40.909 0.00 0.00 0.00 2.57
2842 13019 4.637276 TGAGCGGACAAAAGAGTTGAATA 58.363 39.130 0.00 0.00 0.00 1.75
2843 13020 4.451096 TGAGCGGACAAAAGAGTTGAATAC 59.549 41.667 0.00 0.00 0.00 1.89
2844 13021 4.385825 AGCGGACAAAAGAGTTGAATACA 58.614 39.130 0.00 0.00 0.00 2.29
2845 13022 4.819630 AGCGGACAAAAGAGTTGAATACAA 59.180 37.500 0.00 0.00 0.00 2.41
2859 13036 5.755409 TGAATACAACTAAAGGAGCCTGA 57.245 39.130 0.00 0.00 0.00 3.86
2860 13037 6.313519 TGAATACAACTAAAGGAGCCTGAT 57.686 37.500 0.00 0.00 0.00 2.90
2861 13038 6.115446 TGAATACAACTAAAGGAGCCTGATG 58.885 40.000 0.00 0.00 0.00 3.07
2862 13039 5.957771 ATACAACTAAAGGAGCCTGATGA 57.042 39.130 0.00 0.00 0.00 2.92
2863 13040 4.640771 ACAACTAAAGGAGCCTGATGAA 57.359 40.909 0.00 0.00 0.00 2.57
2864 13041 4.985538 ACAACTAAAGGAGCCTGATGAAA 58.014 39.130 0.00 0.00 0.00 2.69
2865 13042 5.385198 ACAACTAAAGGAGCCTGATGAAAA 58.615 37.500 0.00 0.00 0.00 2.29
2866 13043 5.833131 ACAACTAAAGGAGCCTGATGAAAAA 59.167 36.000 0.00 0.00 0.00 1.94
2867 13044 5.966742 ACTAAAGGAGCCTGATGAAAAAC 57.033 39.130 0.00 0.00 0.00 2.43
2868 13045 5.635120 ACTAAAGGAGCCTGATGAAAAACT 58.365 37.500 0.00 0.00 0.00 2.66
2869 13046 6.071320 ACTAAAGGAGCCTGATGAAAAACTT 58.929 36.000 0.00 0.00 0.00 2.66
2870 13047 5.876651 AAAGGAGCCTGATGAAAAACTTT 57.123 34.783 0.00 0.00 0.00 2.66
2871 13048 4.861102 AGGAGCCTGATGAAAAACTTTG 57.139 40.909 0.00 0.00 0.00 2.77
2872 13049 3.575687 AGGAGCCTGATGAAAAACTTTGG 59.424 43.478 0.00 0.00 0.00 3.28
2873 13050 3.573967 GGAGCCTGATGAAAAACTTTGGA 59.426 43.478 0.00 0.00 0.00 3.53
2874 13051 4.550422 GAGCCTGATGAAAAACTTTGGAC 58.450 43.478 0.00 0.00 0.00 4.02
2875 13052 3.321968 AGCCTGATGAAAAACTTTGGACC 59.678 43.478 0.00 0.00 0.00 4.46
2876 13053 3.857010 GCCTGATGAAAAACTTTGGACCG 60.857 47.826 0.00 0.00 0.00 4.79
2877 13054 3.317993 CCTGATGAAAAACTTTGGACCGT 59.682 43.478 0.00 0.00 0.00 4.83
2878 13055 4.517453 CCTGATGAAAAACTTTGGACCGTA 59.483 41.667 0.00 0.00 0.00 4.02
2879 13056 5.009210 CCTGATGAAAAACTTTGGACCGTAA 59.991 40.000 0.00 0.00 0.00 3.18
2880 13057 6.294508 CCTGATGAAAAACTTTGGACCGTAAT 60.295 38.462 0.00 0.00 0.00 1.89
2881 13058 7.094549 CCTGATGAAAAACTTTGGACCGTAATA 60.095 37.037 0.00 0.00 0.00 0.98
2882 13059 8.343168 TGATGAAAAACTTTGGACCGTAATAT 57.657 30.769 0.00 0.00 0.00 1.28
2883 13060 8.798402 TGATGAAAAACTTTGGACCGTAATATT 58.202 29.630 0.00 0.00 0.00 1.28
2884 13061 9.634163 GATGAAAAACTTTGGACCGTAATATTT 57.366 29.630 0.00 0.00 0.00 1.40
2885 13062 8.804688 TGAAAAACTTTGGACCGTAATATTTG 57.195 30.769 0.00 0.00 0.00 2.32
2886 13063 7.868415 TGAAAAACTTTGGACCGTAATATTTGG 59.132 33.333 0.00 0.00 0.00 3.28
2887 13064 5.907866 AACTTTGGACCGTAATATTTGGG 57.092 39.130 10.25 7.04 0.00 4.12
2888 13065 4.274978 ACTTTGGACCGTAATATTTGGGG 58.725 43.478 10.25 4.93 0.00 4.96
2889 13066 4.018233 ACTTTGGACCGTAATATTTGGGGA 60.018 41.667 10.25 0.00 0.00 4.81
2890 13067 3.849563 TGGACCGTAATATTTGGGGAG 57.150 47.619 10.25 0.00 0.00 4.30
2891 13068 2.158726 TGGACCGTAATATTTGGGGAGC 60.159 50.000 10.25 0.00 0.00 4.70
2892 13069 2.140717 GACCGTAATATTTGGGGAGCG 58.859 52.381 10.25 0.00 0.00 5.03
2893 13070 1.764134 ACCGTAATATTTGGGGAGCGA 59.236 47.619 10.25 0.00 0.00 4.93
2894 13071 2.140717 CCGTAATATTTGGGGAGCGAC 58.859 52.381 0.00 0.00 0.00 5.19
2895 13072 2.484065 CCGTAATATTTGGGGAGCGACA 60.484 50.000 0.00 0.00 0.00 4.35
2896 13073 2.800544 CGTAATATTTGGGGAGCGACAG 59.199 50.000 0.00 0.00 0.00 3.51
2897 13074 1.680338 AATATTTGGGGAGCGACAGC 58.320 50.000 0.00 0.00 45.58 4.40
2898 13075 0.179018 ATATTTGGGGAGCGACAGCC 60.179 55.000 0.00 0.00 46.67 4.85
2899 13076 2.587322 TATTTGGGGAGCGACAGCCG 62.587 60.000 0.00 0.00 46.67 5.52
2919 13096 3.903208 GGCCTGCCCTCAGATTAAA 57.097 52.632 0.00 0.00 42.95 1.52
2920 13097 2.371658 GGCCTGCCCTCAGATTAAAT 57.628 50.000 0.00 0.00 42.95 1.40
2921 13098 3.508845 GGCCTGCCCTCAGATTAAATA 57.491 47.619 0.00 0.00 42.95 1.40
2922 13099 3.416156 GGCCTGCCCTCAGATTAAATAG 58.584 50.000 0.00 0.00 42.95 1.73
2923 13100 3.181439 GGCCTGCCCTCAGATTAAATAGT 60.181 47.826 0.00 0.00 42.95 2.12
2924 13101 4.464947 GCCTGCCCTCAGATTAAATAGTT 58.535 43.478 0.00 0.00 42.95 2.24
2925 13102 4.276926 GCCTGCCCTCAGATTAAATAGTTG 59.723 45.833 0.00 0.00 42.95 3.16
2926 13103 5.684704 CCTGCCCTCAGATTAAATAGTTGA 58.315 41.667 0.00 0.00 42.95 3.18
2927 13104 6.302269 CCTGCCCTCAGATTAAATAGTTGAT 58.698 40.000 0.00 0.00 42.95 2.57
2928 13105 6.206243 CCTGCCCTCAGATTAAATAGTTGATG 59.794 42.308 0.00 0.00 42.95 3.07
2929 13106 6.064060 TGCCCTCAGATTAAATAGTTGATGG 58.936 40.000 0.00 0.00 0.00 3.51
2930 13107 5.048434 GCCCTCAGATTAAATAGTTGATGGC 60.048 44.000 3.90 3.90 40.55 4.40
2931 13108 5.474876 CCCTCAGATTAAATAGTTGATGGCC 59.525 44.000 0.00 0.00 0.00 5.36
2932 13109 6.302269 CCTCAGATTAAATAGTTGATGGCCT 58.698 40.000 3.32 0.00 0.00 5.19
2933 13110 6.206243 CCTCAGATTAAATAGTTGATGGCCTG 59.794 42.308 3.32 0.00 0.00 4.85
2934 13111 6.899089 TCAGATTAAATAGTTGATGGCCTGA 58.101 36.000 3.32 0.00 0.00 3.86
2935 13112 7.345691 TCAGATTAAATAGTTGATGGCCTGAA 58.654 34.615 3.32 0.00 0.00 3.02
2936 13113 7.500227 TCAGATTAAATAGTTGATGGCCTGAAG 59.500 37.037 3.32 0.00 0.00 3.02
2937 13114 7.500227 CAGATTAAATAGTTGATGGCCTGAAGA 59.500 37.037 3.32 0.00 0.00 2.87
2938 13115 7.718753 AGATTAAATAGTTGATGGCCTGAAGAG 59.281 37.037 3.32 0.00 0.00 2.85
2939 13116 2.698855 TAGTTGATGGCCTGAAGAGC 57.301 50.000 3.32 0.00 0.00 4.09
2940 13117 0.392193 AGTTGATGGCCTGAAGAGCG 60.392 55.000 3.32 0.00 0.00 5.03
2941 13118 1.078214 TTGATGGCCTGAAGAGCGG 60.078 57.895 3.32 0.00 0.00 5.52
2942 13119 1.552799 TTGATGGCCTGAAGAGCGGA 61.553 55.000 3.32 0.00 0.00 5.54
2943 13120 1.340399 TGATGGCCTGAAGAGCGGAT 61.340 55.000 3.32 0.00 0.00 4.18
2944 13121 0.681733 GATGGCCTGAAGAGCGGATA 59.318 55.000 3.32 0.00 0.00 2.59
2945 13122 1.070758 GATGGCCTGAAGAGCGGATAA 59.929 52.381 3.32 0.00 0.00 1.75
2954 13131 5.452496 CCTGAAGAGCGGATAATCTGAAGAA 60.452 44.000 0.00 0.00 0.00 2.52
2955 13132 5.595885 TGAAGAGCGGATAATCTGAAGAAG 58.404 41.667 0.00 0.00 0.00 2.85
2962 13139 7.500992 AGCGGATAATCTGAAGAAGACAAATA 58.499 34.615 0.00 0.00 37.88 1.40
2964 13141 7.439655 GCGGATAATCTGAAGAAGACAAATACT 59.560 37.037 0.00 0.00 37.88 2.12
2973 13150 9.495572 CTGAAGAAGACAAATACTAAAAGGACT 57.504 33.333 0.00 0.00 0.00 3.85
2992 13169 9.466497 AAAGGACTATTTATGAAGAAGAATGCA 57.534 29.630 0.00 0.00 0.00 3.96
2993 13170 9.466497 AAGGACTATTTATGAAGAAGAATGCAA 57.534 29.630 0.00 0.00 0.00 4.08
2994 13171 8.897752 AGGACTATTTATGAAGAAGAATGCAAC 58.102 33.333 0.00 0.00 0.00 4.17
3002 13179 6.395426 TGAAGAAGAATGCAACAAACTGAT 57.605 33.333 0.00 0.00 0.00 2.90
3003 13180 6.210796 TGAAGAAGAATGCAACAAACTGATG 58.789 36.000 0.00 0.00 0.00 3.07
3008 15643 4.763793 AGAATGCAACAAACTGATGCTAGT 59.236 37.500 9.81 0.00 44.99 2.57
3012 15647 6.000891 TGCAACAAACTGATGCTAGTTAAG 57.999 37.500 9.81 0.00 44.99 1.85
3015 15650 7.095229 TGCAACAAACTGATGCTAGTTAAGTAG 60.095 37.037 12.29 12.29 44.99 2.57
3016 15651 7.624344 GCAACAAACTGATGCTAGTTAAGTAGG 60.624 40.741 17.20 4.67 42.03 3.18
3024 15659 8.357290 TGATGCTAGTTAAGTAGGAGTAACAA 57.643 34.615 17.20 0.00 33.49 2.83
3026 15661 9.250624 GATGCTAGTTAAGTAGGAGTAACAATG 57.749 37.037 17.20 0.00 33.49 2.82
3028 15663 8.978472 TGCTAGTTAAGTAGGAGTAACAATGAT 58.022 33.333 17.20 0.00 33.49 2.45
3029 15664 9.250624 GCTAGTTAAGTAGGAGTAACAATGATG 57.749 37.037 17.20 0.00 33.49 3.07
3030 15665 9.751542 CTAGTTAAGTAGGAGTAACAATGATGG 57.248 37.037 9.19 0.00 33.49 3.51
3031 15666 7.565680 AGTTAAGTAGGAGTAACAATGATGGG 58.434 38.462 0.00 0.00 33.49 4.00
3032 15667 7.182206 AGTTAAGTAGGAGTAACAATGATGGGT 59.818 37.037 0.00 0.00 33.49 4.51
3033 15668 5.359194 AGTAGGAGTAACAATGATGGGTG 57.641 43.478 0.00 0.00 0.00 4.61
3035 15670 4.927267 AGGAGTAACAATGATGGGTGAA 57.073 40.909 0.00 0.00 0.00 3.18
3036 15671 5.255397 AGGAGTAACAATGATGGGTGAAA 57.745 39.130 0.00 0.00 0.00 2.69
3037 15672 5.010282 AGGAGTAACAATGATGGGTGAAAC 58.990 41.667 0.00 0.00 0.00 2.78
3039 15674 5.106157 GGAGTAACAATGATGGGTGAAACTG 60.106 44.000 0.00 0.00 36.74 3.16
3041 15676 6.068010 AGTAACAATGATGGGTGAAACTGAA 58.932 36.000 0.00 0.00 36.74 3.02
3044 15679 4.037923 ACAATGATGGGTGAAACTGAACAC 59.962 41.667 0.00 0.00 36.74 3.32
3045 15680 3.289407 TGATGGGTGAAACTGAACACA 57.711 42.857 0.00 0.00 38.57 3.72
3046 15681 3.831323 TGATGGGTGAAACTGAACACAT 58.169 40.909 0.00 0.00 43.07 3.21
3047 15682 4.979335 TGATGGGTGAAACTGAACACATA 58.021 39.130 0.00 0.00 40.49 2.29
3048 15683 5.569355 TGATGGGTGAAACTGAACACATAT 58.431 37.500 0.00 0.00 40.49 1.78
3049 15684 5.415389 TGATGGGTGAAACTGAACACATATG 59.585 40.000 0.00 0.00 40.49 1.78
3051 15686 4.079253 GGGTGAAACTGAACACATATGGT 58.921 43.478 7.80 0.00 38.57 3.55
3052 15687 5.221945 TGGGTGAAACTGAACACATATGGTA 60.222 40.000 7.80 0.00 38.57 3.25
3053 15688 5.123344 GGGTGAAACTGAACACATATGGTAC 59.877 44.000 7.80 0.00 38.57 3.34
3054 15689 5.938125 GGTGAAACTGAACACATATGGTACT 59.062 40.000 7.80 0.00 38.57 2.73
3056 15691 6.649141 GTGAAACTGAACACATATGGTACTCA 59.351 38.462 7.80 3.64 37.05 3.41
3057 15692 6.873605 TGAAACTGAACACATATGGTACTCAG 59.126 38.462 17.73 17.73 40.60 3.35
3058 15693 4.759782 ACTGAACACATATGGTACTCAGC 58.240 43.478 18.62 0.00 39.38 4.26
3059 15694 4.222810 ACTGAACACATATGGTACTCAGCA 59.777 41.667 18.62 3.60 39.38 4.41
3061 15696 4.222810 TGAACACATATGGTACTCAGCAGT 59.777 41.667 7.80 0.00 35.19 4.40
3062 15697 4.128925 ACACATATGGTACTCAGCAGTG 57.871 45.455 7.80 0.00 35.19 3.66
3065 15700 0.830648 TATGGTACTCAGCAGTGGCC 59.169 55.000 0.00 0.00 42.56 5.36
3066 15701 1.200760 ATGGTACTCAGCAGTGGCCA 61.201 55.000 0.00 0.00 40.83 5.36
3067 15702 1.078848 GGTACTCAGCAGTGGCCAG 60.079 63.158 5.11 0.00 42.56 4.85
3068 15703 1.078848 GTACTCAGCAGTGGCCAGG 60.079 63.158 5.11 1.85 42.56 4.45
3069 15704 2.293318 TACTCAGCAGTGGCCAGGG 61.293 63.158 5.11 1.38 42.56 4.45
3070 15705 4.421515 CTCAGCAGTGGCCAGGGG 62.422 72.222 5.11 0.00 42.56 4.79
3080 15715 4.705482 GCCAGGGGCCATAATGTT 57.295 55.556 4.39 0.00 44.06 2.71
3082 15717 0.396974 GCCAGGGGCCATAATGTTCA 60.397 55.000 4.39 0.00 44.06 3.18
3084 15719 1.341877 CCAGGGGCCATAATGTTCACA 60.342 52.381 4.39 0.00 0.00 3.58
3086 15721 2.624838 CAGGGGCCATAATGTTCACATC 59.375 50.000 4.39 0.00 35.10 3.06
3089 15724 3.068590 GGGGCCATAATGTTCACATCTTG 59.931 47.826 4.39 0.00 35.10 3.02
3090 15725 3.491447 GGGCCATAATGTTCACATCTTGC 60.491 47.826 4.39 0.00 35.10 4.01
3091 15726 3.491447 GGCCATAATGTTCACATCTTGCC 60.491 47.826 0.00 0.75 35.10 4.52
3092 15727 3.130869 GCCATAATGTTCACATCTTGCCA 59.869 43.478 0.00 0.00 35.10 4.92
3093 15728 4.202182 GCCATAATGTTCACATCTTGCCAT 60.202 41.667 0.00 0.00 35.10 4.40
3094 15729 5.526115 CCATAATGTTCACATCTTGCCATC 58.474 41.667 0.00 0.00 35.10 3.51
3095 15730 5.068067 CCATAATGTTCACATCTTGCCATCA 59.932 40.000 0.00 0.00 35.10 3.07
3096 15731 4.713824 AATGTTCACATCTTGCCATCAG 57.286 40.909 0.00 0.00 35.10 2.90
3097 15732 1.814394 TGTTCACATCTTGCCATCAGC 59.186 47.619 0.00 0.00 44.14 4.26
3099 15734 2.490903 GTTCACATCTTGCCATCAGCTT 59.509 45.455 0.00 0.00 44.23 3.74
3100 15735 2.799017 TCACATCTTGCCATCAGCTTT 58.201 42.857 0.00 0.00 44.23 3.51
3101 15736 3.159472 TCACATCTTGCCATCAGCTTTT 58.841 40.909 0.00 0.00 44.23 2.27
3102 15737 4.334552 TCACATCTTGCCATCAGCTTTTA 58.665 39.130 0.00 0.00 44.23 1.52
3103 15738 4.951715 TCACATCTTGCCATCAGCTTTTAT 59.048 37.500 0.00 0.00 44.23 1.40
3104 15739 5.066893 TCACATCTTGCCATCAGCTTTTATC 59.933 40.000 0.00 0.00 44.23 1.75
3105 15740 4.951715 ACATCTTGCCATCAGCTTTTATCA 59.048 37.500 0.00 0.00 44.23 2.15
3106 15741 5.597182 ACATCTTGCCATCAGCTTTTATCAT 59.403 36.000 0.00 0.00 44.23 2.45
3107 15742 5.509716 TCTTGCCATCAGCTTTTATCATG 57.490 39.130 0.00 0.00 44.23 3.07
3108 15743 4.951715 TCTTGCCATCAGCTTTTATCATGT 59.048 37.500 0.00 0.00 44.23 3.21
3109 15744 4.906065 TGCCATCAGCTTTTATCATGTC 57.094 40.909 0.00 0.00 44.23 3.06
3110 15745 4.271661 TGCCATCAGCTTTTATCATGTCA 58.728 39.130 0.00 0.00 44.23 3.58
3112 15747 4.787563 GCCATCAGCTTTTATCATGTCACG 60.788 45.833 0.00 0.00 38.99 4.35
3113 15748 4.571984 CCATCAGCTTTTATCATGTCACGA 59.428 41.667 0.00 0.00 0.00 4.35
3115 15750 5.723492 TCAGCTTTTATCATGTCACGATG 57.277 39.130 0.00 0.00 0.00 3.84
3116 15751 4.034394 TCAGCTTTTATCATGTCACGATGC 59.966 41.667 0.00 0.00 0.00 3.91
3117 15752 3.940852 AGCTTTTATCATGTCACGATGCA 59.059 39.130 0.00 0.00 0.00 3.96
3119 15754 4.201851 GCTTTTATCATGTCACGATGCACT 60.202 41.667 0.00 0.00 0.00 4.40
3121 15756 1.660167 ATCATGTCACGATGCACTGG 58.340 50.000 0.00 0.00 0.00 4.00
3122 15757 0.607620 TCATGTCACGATGCACTGGA 59.392 50.000 0.00 0.00 0.00 3.86
3123 15758 1.004595 CATGTCACGATGCACTGGAG 58.995 55.000 0.00 0.00 0.00 3.86
3124 15759 0.107993 ATGTCACGATGCACTGGAGG 60.108 55.000 0.00 0.00 0.00 4.30
3125 15760 2.103042 GTCACGATGCACTGGAGGC 61.103 63.158 0.00 0.00 0.00 4.70
3126 15761 2.046988 CACGATGCACTGGAGGCA 60.047 61.111 0.00 0.00 46.66 4.75
3127 15762 2.104859 CACGATGCACTGGAGGCAG 61.105 63.158 0.00 0.00 45.68 4.85
3129 15764 1.521010 CGATGCACTGGAGGCAGAG 60.521 63.158 0.00 0.00 45.68 3.35
3130 15765 1.903294 GATGCACTGGAGGCAGAGA 59.097 57.895 0.00 0.00 45.68 3.10
3131 15766 0.469070 GATGCACTGGAGGCAGAGAT 59.531 55.000 0.00 0.00 45.68 2.75
3151 16120 9.688592 CAGAGATTCTGCTTTAATTGAAAGTTT 57.311 29.630 0.00 0.00 45.56 2.66
3152 16121 9.688592 AGAGATTCTGCTTTAATTGAAAGTTTG 57.311 29.630 0.00 0.00 45.56 2.93
3153 16122 8.822652 AGATTCTGCTTTAATTGAAAGTTTGG 57.177 30.769 0.00 0.00 45.56 3.28
3154 16123 6.843069 TTCTGCTTTAATTGAAAGTTTGGC 57.157 33.333 0.00 0.00 45.56 4.52
3155 16124 4.981674 TCTGCTTTAATTGAAAGTTTGGCG 59.018 37.500 0.00 0.00 45.56 5.69
3156 16125 3.492756 TGCTTTAATTGAAAGTTTGGCGC 59.507 39.130 0.00 0.00 45.56 6.53
3157 16126 3.740832 GCTTTAATTGAAAGTTTGGCGCT 59.259 39.130 7.64 0.00 45.56 5.92
3158 16127 4.376311 GCTTTAATTGAAAGTTTGGCGCTG 60.376 41.667 7.64 0.00 45.56 5.18
3159 16128 2.153366 AATTGAAAGTTTGGCGCTGG 57.847 45.000 7.64 0.00 0.00 4.85
3160 16129 0.319813 ATTGAAAGTTTGGCGCTGGC 60.320 50.000 7.64 0.00 38.90 4.85
3162 16131 0.536233 TGAAAGTTTGGCGCTGGCTA 60.536 50.000 7.64 0.00 39.81 3.93
3166 16135 0.830648 AGTTTGGCGCTGGCTAGATA 59.169 50.000 7.64 0.00 39.81 1.98
3167 16136 1.209504 AGTTTGGCGCTGGCTAGATAA 59.790 47.619 7.64 0.00 39.81 1.75
3169 16138 1.882912 TTGGCGCTGGCTAGATAATG 58.117 50.000 7.64 0.00 39.81 1.90
3171 16140 0.321671 GGCGCTGGCTAGATAATGGA 59.678 55.000 7.64 0.00 39.81 3.41
3172 16141 1.674221 GGCGCTGGCTAGATAATGGAG 60.674 57.143 7.64 0.00 39.81 3.86
3174 16143 2.231478 GCGCTGGCTAGATAATGGAGTA 59.769 50.000 0.00 0.00 35.83 2.59
3176 16145 4.621747 GCGCTGGCTAGATAATGGAGTAAT 60.622 45.833 0.00 0.00 35.83 1.89
3179 16148 6.573289 CGCTGGCTAGATAATGGAGTAATCTT 60.573 42.308 0.00 0.00 32.39 2.40
3180 16149 6.816140 GCTGGCTAGATAATGGAGTAATCTTC 59.184 42.308 0.00 0.00 32.39 2.87
3181 16150 7.246171 TGGCTAGATAATGGAGTAATCTTCC 57.754 40.000 0.00 0.00 32.39 3.46
3182 16151 6.213600 TGGCTAGATAATGGAGTAATCTTCCC 59.786 42.308 0.00 0.00 32.39 3.97
3183 16152 6.213600 GGCTAGATAATGGAGTAATCTTCCCA 59.786 42.308 0.00 0.00 32.39 4.37
3184 16153 7.092668 GGCTAGATAATGGAGTAATCTTCCCAT 60.093 40.741 0.00 0.00 40.84 4.00
3186 16155 9.664332 CTAGATAATGGAGTAATCTTCCCATTG 57.336 37.037 13.84 0.00 45.77 2.82
3187 16156 8.050316 AGATAATGGAGTAATCTTCCCATTGT 57.950 34.615 13.84 8.44 45.77 2.71
3188 16157 9.170890 AGATAATGGAGTAATCTTCCCATTGTA 57.829 33.333 13.84 0.00 45.77 2.41
3190 16159 6.831664 ATGGAGTAATCTTCCCATTGTAGT 57.168 37.500 0.00 0.00 36.05 2.73
3191 16160 6.636454 TGGAGTAATCTTCCCATTGTAGTT 57.364 37.500 0.00 0.00 0.00 2.24
3192 16161 6.414732 TGGAGTAATCTTCCCATTGTAGTTG 58.585 40.000 0.00 0.00 0.00 3.16
3194 16163 6.763610 GGAGTAATCTTCCCATTGTAGTTGAG 59.236 42.308 0.00 0.00 0.00 3.02
3197 16166 5.762179 ATCTTCCCATTGTAGTTGAGTGA 57.238 39.130 0.00 0.00 0.00 3.41
3198 16167 4.894784 TCTTCCCATTGTAGTTGAGTGAC 58.105 43.478 0.00 0.00 0.00 3.67
3199 16168 4.593206 TCTTCCCATTGTAGTTGAGTGACT 59.407 41.667 0.00 0.00 0.00 3.41
3200 16169 4.537135 TCCCATTGTAGTTGAGTGACTC 57.463 45.455 5.47 5.47 0.00 3.36
3201 16170 3.901222 TCCCATTGTAGTTGAGTGACTCA 59.099 43.478 11.93 11.93 38.87 3.41
3211 16180 4.736126 TTGAGTGACTCAACTTGACTCA 57.264 40.909 23.02 0.00 44.27 3.41
3212 16181 4.313277 TGAGTGACTCAACTTGACTCAG 57.687 45.455 13.74 0.00 38.45 3.35
3213 16182 3.954258 TGAGTGACTCAACTTGACTCAGA 59.046 43.478 13.74 0.00 38.45 3.27
3214 16183 4.202060 TGAGTGACTCAACTTGACTCAGAC 60.202 45.833 13.74 3.85 38.45 3.51
3217 16186 3.701542 TGACTCAACTTGACTCAGACTGT 59.298 43.478 1.59 0.00 0.00 3.55
3218 16187 4.160439 TGACTCAACTTGACTCAGACTGTT 59.840 41.667 1.59 0.00 0.00 3.16
3219 16188 5.091261 ACTCAACTTGACTCAGACTGTTT 57.909 39.130 1.59 0.00 0.00 2.83
3220 16189 4.872691 ACTCAACTTGACTCAGACTGTTTG 59.127 41.667 1.59 0.00 0.00 2.93
3221 16190 4.191544 TCAACTTGACTCAGACTGTTTGG 58.808 43.478 1.59 0.00 0.00 3.28
3222 16191 4.081142 TCAACTTGACTCAGACTGTTTGGA 60.081 41.667 1.59 0.00 0.00 3.53
3224 16193 4.843728 ACTTGACTCAGACTGTTTGGAAA 58.156 39.130 1.59 0.00 0.00 3.13
3225 16194 4.636206 ACTTGACTCAGACTGTTTGGAAAC 59.364 41.667 1.59 0.00 39.33 2.78
3226 16195 4.214986 TGACTCAGACTGTTTGGAAACA 57.785 40.909 1.59 4.92 45.88 2.83
3241 16771 8.324306 TGTTTGGAAACAGAGATAGATGAAGAT 58.676 33.333 0.70 0.00 43.45 2.40
3244 16774 8.728337 TGGAAACAGAGATAGATGAAGATTTG 57.272 34.615 0.00 0.00 35.01 2.32
3266 16796 8.464770 TTTGCTTTCTTAATTCATGAATTCGG 57.535 30.769 31.70 24.45 40.99 4.30
3267 16797 7.389803 TGCTTTCTTAATTCATGAATTCGGA 57.610 32.000 31.70 25.90 40.99 4.55
3268 16798 7.250569 TGCTTTCTTAATTCATGAATTCGGAC 58.749 34.615 31.70 19.28 40.99 4.79
3269 16799 7.094420 TGCTTTCTTAATTCATGAATTCGGACA 60.094 33.333 31.70 21.88 40.99 4.02
3270 16800 7.218963 GCTTTCTTAATTCATGAATTCGGACAC 59.781 37.037 31.70 18.51 40.99 3.67
3271 16801 7.680442 TTCTTAATTCATGAATTCGGACACA 57.320 32.000 31.70 13.87 40.99 3.72
3272 16802 7.307493 TCTTAATTCATGAATTCGGACACAG 57.693 36.000 31.70 18.10 40.99 3.66
3274 16804 2.470983 TCATGAATTCGGACACAGCA 57.529 45.000 0.04 0.00 0.00 4.41
3275 16805 2.989909 TCATGAATTCGGACACAGCAT 58.010 42.857 0.04 0.00 0.00 3.79
3276 16806 2.679336 TCATGAATTCGGACACAGCATG 59.321 45.455 0.04 0.00 46.00 4.06
3277 16807 1.452110 TGAATTCGGACACAGCATGG 58.548 50.000 0.04 0.00 43.62 3.66
3278 16808 0.099436 GAATTCGGACACAGCATGGC 59.901 55.000 0.00 0.00 43.62 4.40
3281 16811 3.129502 CGGACACAGCATGGCAGG 61.130 66.667 0.00 0.00 43.62 4.85
3282 16812 2.352422 GGACACAGCATGGCAGGA 59.648 61.111 1.99 0.00 43.62 3.86
3283 16813 2.042831 GGACACAGCATGGCAGGAC 61.043 63.158 1.99 0.00 43.62 3.85
3285 16815 1.303074 ACACAGCATGGCAGGACAG 60.303 57.895 1.99 0.00 43.62 3.51
3286 16816 1.002990 CACAGCATGGCAGGACAGA 60.003 57.895 1.99 0.00 43.62 3.41
3287 16817 0.607217 CACAGCATGGCAGGACAGAA 60.607 55.000 1.99 0.00 43.62 3.02
3288 16818 0.607489 ACAGCATGGCAGGACAGAAC 60.607 55.000 1.99 0.00 43.62 3.01
3289 16819 0.607217 CAGCATGGCAGGACAGAACA 60.607 55.000 1.99 0.00 0.00 3.18
3290 16820 0.607489 AGCATGGCAGGACAGAACAC 60.607 55.000 1.99 0.00 0.00 3.32
3292 16822 1.339055 GCATGGCAGGACAGAACACTA 60.339 52.381 1.99 0.00 0.00 2.74
3293 16823 2.625737 CATGGCAGGACAGAACACTAG 58.374 52.381 0.00 0.00 0.00 2.57
3294 16824 1.717032 TGGCAGGACAGAACACTAGT 58.283 50.000 0.00 0.00 0.00 2.57
3295 16825 2.884320 TGGCAGGACAGAACACTAGTA 58.116 47.619 0.00 0.00 0.00 1.82
3298 16828 5.020795 TGGCAGGACAGAACACTAGTATTA 58.979 41.667 0.00 0.00 0.00 0.98
3299 16829 5.105473 TGGCAGGACAGAACACTAGTATTAC 60.105 44.000 0.00 0.00 0.00 1.89
3300 16830 5.127356 GGCAGGACAGAACACTAGTATTACT 59.873 44.000 0.00 1.30 0.00 2.24
3301 16831 6.267070 GCAGGACAGAACACTAGTATTACTC 58.733 44.000 0.00 0.00 0.00 2.59
3303 16833 7.416890 GCAGGACAGAACACTAGTATTACTCAT 60.417 40.741 0.00 0.00 0.00 2.90
3304 16834 7.918033 CAGGACAGAACACTAGTATTACTCATG 59.082 40.741 0.00 3.00 0.00 3.07
3305 16835 7.616150 AGGACAGAACACTAGTATTACTCATGT 59.384 37.037 0.00 3.62 30.43 3.21
3307 16837 7.036220 ACAGAACACTAGTATTACTCATGTGC 58.964 38.462 17.15 13.44 31.76 4.57
3308 16838 6.197282 CAGAACACTAGTATTACTCATGTGCG 59.803 42.308 17.15 8.68 30.75 5.34
3309 16839 5.578005 ACACTAGTATTACTCATGTGCGT 57.422 39.130 17.15 0.00 31.76 5.24
3310 16840 5.962433 ACACTAGTATTACTCATGTGCGTT 58.038 37.500 17.15 3.98 31.76 4.84
3312 16842 6.033966 CACTAGTATTACTCATGTGCGTTGA 58.966 40.000 0.00 0.00 0.00 3.18
3314 16844 5.973651 AGTATTACTCATGTGCGTTGATG 57.026 39.130 0.00 0.00 0.00 3.07
3315 16845 5.419542 AGTATTACTCATGTGCGTTGATGT 58.580 37.500 0.00 0.00 0.00 3.06
3316 16846 4.864916 ATTACTCATGTGCGTTGATGTC 57.135 40.909 0.00 0.00 0.00 3.06
3317 16847 2.168326 ACTCATGTGCGTTGATGTCA 57.832 45.000 0.00 0.00 0.00 3.58
3321 16851 3.626977 TCATGTGCGTTGATGTCAAAAC 58.373 40.909 0.00 0.00 37.63 2.43
3322 16852 3.314913 TCATGTGCGTTGATGTCAAAACT 59.685 39.130 0.00 0.00 37.63 2.66
3323 16853 3.332761 TGTGCGTTGATGTCAAAACTC 57.667 42.857 0.00 0.00 37.63 3.01
3324 16854 2.942376 TGTGCGTTGATGTCAAAACTCT 59.058 40.909 0.00 0.00 37.63 3.24
3325 16855 3.242706 TGTGCGTTGATGTCAAAACTCTG 60.243 43.478 0.00 0.00 37.63 3.35
3326 16856 2.942376 TGCGTTGATGTCAAAACTCTGT 59.058 40.909 0.00 0.00 37.63 3.41
3328 16858 4.572795 TGCGTTGATGTCAAAACTCTGTAA 59.427 37.500 0.00 0.00 37.63 2.41
3329 16859 5.065346 TGCGTTGATGTCAAAACTCTGTAAA 59.935 36.000 0.00 0.00 37.63 2.01
3330 16860 5.621228 GCGTTGATGTCAAAACTCTGTAAAG 59.379 40.000 0.00 0.00 37.63 1.85
3331 16861 5.621228 CGTTGATGTCAAAACTCTGTAAAGC 59.379 40.000 0.00 0.00 37.63 3.51
3332 16862 6.511767 CGTTGATGTCAAAACTCTGTAAAGCT 60.512 38.462 0.00 0.00 37.63 3.74
3334 16864 8.507249 GTTGATGTCAAAACTCTGTAAAGCTAT 58.493 33.333 0.00 0.00 37.63 2.97
3336 16866 9.890629 TGATGTCAAAACTCTGTAAAGCTATAT 57.109 29.630 0.00 0.00 0.00 0.86
3341 16871 9.817809 TCAAAACTCTGTAAAGCTATATACTGG 57.182 33.333 0.00 0.00 0.00 4.00
3342 16872 9.601217 CAAAACTCTGTAAAGCTATATACTGGT 57.399 33.333 0.00 0.00 0.00 4.00
3343 16873 9.601217 AAAACTCTGTAAAGCTATATACTGGTG 57.399 33.333 0.00 0.00 0.00 4.17
3344 16874 8.534954 AACTCTGTAAAGCTATATACTGGTGA 57.465 34.615 0.00 0.00 0.00 4.02
3345 16875 8.713708 ACTCTGTAAAGCTATATACTGGTGAT 57.286 34.615 0.00 0.00 0.00 3.06
3346 16876 8.798402 ACTCTGTAAAGCTATATACTGGTGATC 58.202 37.037 0.00 0.00 0.00 2.92
3352 16882 8.671987 AAAGCTATATACTGGTGATCTATGGT 57.328 34.615 0.00 0.00 0.00 3.55
3353 16883 9.769677 AAAGCTATATACTGGTGATCTATGGTA 57.230 33.333 0.00 0.00 0.00 3.25
3354 16884 8.988546 AGCTATATACTGGTGATCTATGGTAG 57.011 38.462 0.00 0.00 0.00 3.18
3355 16885 8.782927 AGCTATATACTGGTGATCTATGGTAGA 58.217 37.037 0.00 0.00 39.50 2.59
3356 16886 9.409918 GCTATATACTGGTGATCTATGGTAGAA 57.590 37.037 0.00 0.00 38.50 2.10
3359 16889 7.768807 ATACTGGTGATCTATGGTAGAACTC 57.231 40.000 0.00 0.00 38.50 3.01
3360 16890 5.519808 ACTGGTGATCTATGGTAGAACTCA 58.480 41.667 0.00 0.00 38.50 3.41
3361 16891 5.958380 ACTGGTGATCTATGGTAGAACTCAA 59.042 40.000 0.00 0.00 38.50 3.02
3362 16892 6.127310 ACTGGTGATCTATGGTAGAACTCAAC 60.127 42.308 0.00 0.77 38.50 3.18
3363 16893 5.719563 TGGTGATCTATGGTAGAACTCAACA 59.280 40.000 4.88 4.88 38.51 3.33
3364 16894 6.127338 TGGTGATCTATGGTAGAACTCAACAG 60.127 42.308 4.88 0.00 36.89 3.16
3365 16895 5.751028 GTGATCTATGGTAGAACTCAACAGC 59.249 44.000 0.00 0.00 38.50 4.40
3366 16896 4.371855 TCTATGGTAGAACTCAACAGCG 57.628 45.455 0.00 0.00 0.00 5.18
3367 16897 1.726853 ATGGTAGAACTCAACAGCGC 58.273 50.000 0.00 0.00 0.00 5.92
3368 16898 0.391228 TGGTAGAACTCAACAGCGCA 59.609 50.000 11.47 0.00 0.00 6.09
3369 16899 0.790814 GGTAGAACTCAACAGCGCAC 59.209 55.000 11.47 0.00 0.00 5.34
3370 16900 1.605712 GGTAGAACTCAACAGCGCACT 60.606 52.381 11.47 0.00 0.00 4.40
3379 16909 2.849007 CAGCGCACTGTCGTCTTG 59.151 61.111 11.47 0.00 39.22 3.02
3380 16910 1.951130 CAGCGCACTGTCGTCTTGT 60.951 57.895 11.47 0.00 39.22 3.16
3381 16911 1.227263 AGCGCACTGTCGTCTTGTT 60.227 52.632 11.47 0.00 0.00 2.83
3382 16912 0.031585 AGCGCACTGTCGTCTTGTTA 59.968 50.000 11.47 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
631 639 3.567397 TGTTGGAGAGGTCTAGATAGGC 58.433 50.000 0.00 0.00 0.00 3.93
705 4394 7.841282 TCTATTGTTCCTTAGGTCCAGATAG 57.159 40.000 0.00 6.87 0.00 2.08
734 4423 2.158885 TGTTCTTCCGTGATCACACCAA 60.159 45.455 24.93 12.66 43.34 3.67
832 4521 1.128809 TCCAACGTAAAGGGAGGGCA 61.129 55.000 0.00 0.00 0.00 5.36
852 4541 2.919229 GCAAGATCGAAACCATGCAAAG 59.081 45.455 0.00 0.00 34.10 2.77
879 4568 2.424234 CCAAGGTGGAAAAAGAGGACCA 60.424 50.000 0.00 0.00 40.96 4.02
888 4577 1.407258 CGTTGAAGCCAAGGTGGAAAA 59.593 47.619 0.00 0.00 40.96 2.29
948 4640 3.199946 ACCAATCAGAAATCTCGCCCTTA 59.800 43.478 0.00 0.00 0.00 2.69
961 4653 0.968405 GCAGGCCAAAACCAATCAGA 59.032 50.000 5.01 0.00 0.00 3.27
1003 4695 7.335924 GCCACTTATTTGGTTGTTAGAGATGTA 59.664 37.037 0.00 0.00 39.09 2.29
1039 4731 0.754217 GCCATGCCATCCAGATGTGT 60.754 55.000 6.87 0.00 37.11 3.72
1062 4754 3.567585 TGGAACTGAGATAGAGCTGATCG 59.432 47.826 0.00 0.00 0.00 3.69
1065 4757 4.348486 AGTTGGAACTGAGATAGAGCTGA 58.652 43.478 0.00 0.00 37.98 4.26
1066 4758 4.734398 AGTTGGAACTGAGATAGAGCTG 57.266 45.455 0.00 0.00 37.98 4.24
1083 4775 2.270352 TTGGTCCAGTAAGCCAGTTG 57.730 50.000 0.00 0.00 33.41 3.16
1087 4779 2.557869 AGGTATTGGTCCAGTAAGCCA 58.442 47.619 0.00 0.00 0.00 4.75
1292 4984 2.654385 TGAGGAATTCCACCCTCCAAAT 59.346 45.455 26.22 0.98 46.43 2.32
1377 5069 4.574828 GTGTTGTTCTCTAAAAGTGCTGGA 59.425 41.667 0.00 0.00 0.00 3.86
1384 5076 5.728255 CAGACGTGTGTTGTTCTCTAAAAG 58.272 41.667 4.19 0.00 0.00 2.27
1389 5081 1.134818 TGCAGACGTGTGTTGTTCTCT 60.135 47.619 14.77 0.00 0.00 3.10
1390 5082 1.258982 CTGCAGACGTGTGTTGTTCTC 59.741 52.381 14.77 0.00 0.00 2.87
1402 5094 2.095567 CCAGATCCAAAAACTGCAGACG 60.096 50.000 23.35 3.19 0.00 4.18
1462 5154 1.173043 CGTAAATTGGCCAGCTTCCA 58.827 50.000 5.11 0.41 0.00 3.53
1564 5256 5.652014 CACCAAAGAACCTATTGCCTGATAA 59.348 40.000 0.00 0.00 0.00 1.75
1622 5314 7.227512 CCATGTATTCCTCTTGTAATGTTCTCC 59.772 40.741 0.00 0.00 0.00 3.71
1665 5357 4.037208 GCAAATTCACTGGGATCATGTAGG 59.963 45.833 0.00 0.00 0.00 3.18
1680 5381 2.098934 CCCAATTCCGATCGCAAATTCA 59.901 45.455 18.29 0.00 0.00 2.57
1743 5447 6.815641 GTGTCCTGTGATATATAAGATGCTGG 59.184 42.308 0.00 0.00 0.00 4.85
1907 5617 2.401583 TTCTAATGACTGCATGGCGT 57.598 45.000 0.00 0.00 34.26 5.68
2159 11725 2.002127 CTGCTTTCGAGATCGCCAC 58.998 57.895 0.00 0.00 39.60 5.01
2183 11749 4.796038 AAGGTCAATGGCTCAAATTCTG 57.204 40.909 0.00 0.00 0.00 3.02
2241 11807 2.106566 AGTGCACAAAACACCATCCAA 58.893 42.857 21.04 0.00 38.87 3.53
2291 11857 1.071567 CTCGTCGAAGAGCCGGAAAC 61.072 60.000 15.39 0.00 36.95 2.78
2379 11945 8.541234 ACTACCTCCTTAAGAGAAATTGGTTAG 58.459 37.037 3.36 5.20 46.50 2.34
2394 11962 4.589798 TGCAGTACAAACACTACCTCCTTA 59.410 41.667 0.00 0.00 0.00 2.69
2412 11980 3.372206 GCTCTCATTCAATACGTTGCAGT 59.628 43.478 0.00 0.00 35.26 4.40
2420 11988 5.275067 AGTCCAGAGCTCTCATTCAATAC 57.725 43.478 14.96 3.49 0.00 1.89
2461 12159 6.650807 CGATATAACATATGTTGCTGGAGGTT 59.349 38.462 27.62 3.20 38.90 3.50
2489 12188 2.754946 TAGAGGGTACAAACAAGGCG 57.245 50.000 0.00 0.00 0.00 5.52
2531 12262 6.599437 AGTAAAGTCATAAATGCGTCACAAC 58.401 36.000 0.00 0.00 0.00 3.32
2534 12265 8.388103 ACAATAGTAAAGTCATAAATGCGTCAC 58.612 33.333 0.00 0.00 0.00 3.67
2539 12270 9.422196 GTTCGACAATAGTAAAGTCATAAATGC 57.578 33.333 0.00 0.00 32.68 3.56
2607 12346 9.884814 AAGAATAGTAAGGTCCTACATGTATCT 57.115 33.333 5.91 0.00 0.00 1.98
2734 12911 5.300752 CCGCTGGAATAAAGTATCACAGAT 58.699 41.667 0.00 0.00 0.00 2.90
2744 12921 1.828224 GGGGGCCGCTGGAATAAAG 60.828 63.158 20.51 0.00 0.00 1.85
2745 12922 2.277404 GGGGGCCGCTGGAATAAA 59.723 61.111 20.51 0.00 0.00 1.40
2747 12924 3.488569 CAGGGGGCCGCTGGAATA 61.489 66.667 35.86 0.00 40.11 1.75
2758 12935 3.026847 TATGTTGGGGCCAGGGGG 61.027 66.667 4.39 0.00 37.18 5.40
2759 12936 2.603008 CTATGTTGGGGCCAGGGG 59.397 66.667 4.39 0.00 0.00 4.79
2760 12937 2.123726 GCTATGTTGGGGCCAGGG 60.124 66.667 4.39 0.00 0.00 4.45
2762 12939 1.152881 GGAGCTATGTTGGGGCCAG 60.153 63.158 4.39 0.00 0.00 4.85
2764 12941 2.203209 CGGAGCTATGTTGGGGCC 60.203 66.667 0.00 0.00 0.00 5.80
2777 12954 0.108186 TGTATTCAGCAGTGGCGGAG 60.108 55.000 0.00 0.00 44.91 4.63
2781 12958 4.142600 CCTTTAGTTGTATTCAGCAGTGGC 60.143 45.833 0.00 0.00 41.61 5.01
2782 12959 5.003804 ACCTTTAGTTGTATTCAGCAGTGG 58.996 41.667 0.00 0.00 0.00 4.00
2783 12960 5.106555 CCACCTTTAGTTGTATTCAGCAGTG 60.107 44.000 0.00 0.00 0.00 3.66
2784 12961 5.003804 CCACCTTTAGTTGTATTCAGCAGT 58.996 41.667 0.00 0.00 0.00 4.40
2785 12962 4.142600 GCCACCTTTAGTTGTATTCAGCAG 60.143 45.833 0.00 0.00 0.00 4.24
2786 12963 3.756434 GCCACCTTTAGTTGTATTCAGCA 59.244 43.478 0.00 0.00 0.00 4.41
2787 12964 3.128764 GGCCACCTTTAGTTGTATTCAGC 59.871 47.826 0.00 0.00 0.00 4.26
2788 12965 3.374058 CGGCCACCTTTAGTTGTATTCAG 59.626 47.826 2.24 0.00 0.00 3.02
2789 12966 3.008157 TCGGCCACCTTTAGTTGTATTCA 59.992 43.478 2.24 0.00 0.00 2.57
2790 12967 3.602483 TCGGCCACCTTTAGTTGTATTC 58.398 45.455 2.24 0.00 0.00 1.75
2791 12968 3.706600 TCGGCCACCTTTAGTTGTATT 57.293 42.857 2.24 0.00 0.00 1.89
2792 12969 3.199071 TCATCGGCCACCTTTAGTTGTAT 59.801 43.478 2.24 0.00 0.00 2.29
2793 12970 2.568062 TCATCGGCCACCTTTAGTTGTA 59.432 45.455 2.24 0.00 0.00 2.41
2794 12971 1.349688 TCATCGGCCACCTTTAGTTGT 59.650 47.619 2.24 0.00 0.00 3.32
2795 12972 2.009774 CTCATCGGCCACCTTTAGTTG 58.990 52.381 2.24 0.00 0.00 3.16
2796 12973 1.065418 CCTCATCGGCCACCTTTAGTT 60.065 52.381 2.24 0.00 0.00 2.24
2797 12974 0.541863 CCTCATCGGCCACCTTTAGT 59.458 55.000 2.24 0.00 0.00 2.24
2798 12975 3.386543 CCTCATCGGCCACCTTTAG 57.613 57.895 2.24 0.00 0.00 1.85
2808 12985 2.732468 CGCTCATCGCCTCATCGG 60.732 66.667 0.00 0.00 34.21 4.18
2809 12986 2.732468 CCGCTCATCGCCTCATCG 60.732 66.667 0.00 0.00 36.73 3.84
2810 12987 1.663074 GTCCGCTCATCGCCTCATC 60.663 63.158 0.00 0.00 36.73 2.92
2811 12988 1.960040 TTGTCCGCTCATCGCCTCAT 61.960 55.000 0.00 0.00 36.73 2.90
2812 12989 2.166130 TTTGTCCGCTCATCGCCTCA 62.166 55.000 0.00 0.00 36.73 3.86
2813 12990 1.019278 TTTTGTCCGCTCATCGCCTC 61.019 55.000 0.00 0.00 36.73 4.70
2814 12991 1.003839 TTTTGTCCGCTCATCGCCT 60.004 52.632 0.00 0.00 36.73 5.52
2815 12992 1.019278 TCTTTTGTCCGCTCATCGCC 61.019 55.000 0.00 0.00 36.73 5.54
2816 12993 0.371645 CTCTTTTGTCCGCTCATCGC 59.628 55.000 0.00 0.00 36.73 4.58
2817 12994 1.714794 ACTCTTTTGTCCGCTCATCG 58.285 50.000 0.00 0.00 38.08 3.84
2818 12995 3.067106 TCAACTCTTTTGTCCGCTCATC 58.933 45.455 0.00 0.00 0.00 2.92
2819 12996 3.126001 TCAACTCTTTTGTCCGCTCAT 57.874 42.857 0.00 0.00 0.00 2.90
2820 12997 2.613026 TCAACTCTTTTGTCCGCTCA 57.387 45.000 0.00 0.00 0.00 4.26
2821 12998 4.451096 TGTATTCAACTCTTTTGTCCGCTC 59.549 41.667 0.00 0.00 0.00 5.03
2822 12999 4.385825 TGTATTCAACTCTTTTGTCCGCT 58.614 39.130 0.00 0.00 0.00 5.52
2823 13000 4.742438 TGTATTCAACTCTTTTGTCCGC 57.258 40.909 0.00 0.00 0.00 5.54
2836 13013 6.121776 TCAGGCTCCTTTAGTTGTATTCAA 57.878 37.500 0.00 0.00 0.00 2.69
2837 13014 5.755409 TCAGGCTCCTTTAGTTGTATTCA 57.245 39.130 0.00 0.00 0.00 2.57
2838 13015 6.349300 TCATCAGGCTCCTTTAGTTGTATTC 58.651 40.000 0.00 0.00 0.00 1.75
2839 13016 6.313519 TCATCAGGCTCCTTTAGTTGTATT 57.686 37.500 0.00 0.00 0.00 1.89
2840 13017 5.957771 TCATCAGGCTCCTTTAGTTGTAT 57.042 39.130 0.00 0.00 0.00 2.29
2841 13018 5.755409 TTCATCAGGCTCCTTTAGTTGTA 57.245 39.130 0.00 0.00 0.00 2.41
2842 13019 4.640771 TTCATCAGGCTCCTTTAGTTGT 57.359 40.909 0.00 0.00 0.00 3.32
2843 13020 5.964958 TTTTCATCAGGCTCCTTTAGTTG 57.035 39.130 0.00 0.00 0.00 3.16
2844 13021 6.071320 AGTTTTTCATCAGGCTCCTTTAGTT 58.929 36.000 0.00 0.00 0.00 2.24
2845 13022 5.635120 AGTTTTTCATCAGGCTCCTTTAGT 58.365 37.500 0.00 0.00 0.00 2.24
2846 13023 6.581171 AAGTTTTTCATCAGGCTCCTTTAG 57.419 37.500 0.00 0.00 0.00 1.85
2847 13024 6.239289 CCAAAGTTTTTCATCAGGCTCCTTTA 60.239 38.462 0.00 0.00 0.00 1.85
2848 13025 5.453762 CCAAAGTTTTTCATCAGGCTCCTTT 60.454 40.000 0.00 0.00 0.00 3.11
2849 13026 4.039609 CCAAAGTTTTTCATCAGGCTCCTT 59.960 41.667 0.00 0.00 0.00 3.36
2850 13027 3.575687 CCAAAGTTTTTCATCAGGCTCCT 59.424 43.478 0.00 0.00 0.00 3.69
2851 13028 3.573967 TCCAAAGTTTTTCATCAGGCTCC 59.426 43.478 0.00 0.00 0.00 4.70
2852 13029 4.550422 GTCCAAAGTTTTTCATCAGGCTC 58.450 43.478 0.00 0.00 0.00 4.70
2853 13030 3.321968 GGTCCAAAGTTTTTCATCAGGCT 59.678 43.478 0.00 0.00 0.00 4.58
2854 13031 3.653344 GGTCCAAAGTTTTTCATCAGGC 58.347 45.455 0.00 0.00 0.00 4.85
2855 13032 3.317993 ACGGTCCAAAGTTTTTCATCAGG 59.682 43.478 0.00 0.00 0.00 3.86
2856 13033 4.568152 ACGGTCCAAAGTTTTTCATCAG 57.432 40.909 0.00 0.00 0.00 2.90
2857 13034 6.642707 ATTACGGTCCAAAGTTTTTCATCA 57.357 33.333 0.00 0.00 0.00 3.07
2858 13035 9.634163 AAATATTACGGTCCAAAGTTTTTCATC 57.366 29.630 0.00 0.00 0.00 2.92
2859 13036 9.418045 CAAATATTACGGTCCAAAGTTTTTCAT 57.582 29.630 0.00 0.00 0.00 2.57
2860 13037 7.868415 CCAAATATTACGGTCCAAAGTTTTTCA 59.132 33.333 0.00 0.00 0.00 2.69
2861 13038 7.329962 CCCAAATATTACGGTCCAAAGTTTTTC 59.670 37.037 0.00 0.00 0.00 2.29
2862 13039 7.156000 CCCAAATATTACGGTCCAAAGTTTTT 58.844 34.615 0.00 0.00 0.00 1.94
2863 13040 6.295405 CCCCAAATATTACGGTCCAAAGTTTT 60.295 38.462 0.00 0.00 0.00 2.43
2864 13041 5.186215 CCCCAAATATTACGGTCCAAAGTTT 59.814 40.000 0.00 0.00 0.00 2.66
2865 13042 4.707934 CCCCAAATATTACGGTCCAAAGTT 59.292 41.667 0.00 0.00 0.00 2.66
2866 13043 4.018233 TCCCCAAATATTACGGTCCAAAGT 60.018 41.667 0.00 0.00 0.00 2.66
2867 13044 4.528920 TCCCCAAATATTACGGTCCAAAG 58.471 43.478 0.00 0.00 0.00 2.77
2868 13045 4.528920 CTCCCCAAATATTACGGTCCAAA 58.471 43.478 0.00 0.00 0.00 3.28
2869 13046 3.686120 GCTCCCCAAATATTACGGTCCAA 60.686 47.826 0.00 0.00 0.00 3.53
2870 13047 2.158726 GCTCCCCAAATATTACGGTCCA 60.159 50.000 0.00 0.00 0.00 4.02
2871 13048 2.501261 GCTCCCCAAATATTACGGTCC 58.499 52.381 0.00 0.00 0.00 4.46
2872 13049 2.140717 CGCTCCCCAAATATTACGGTC 58.859 52.381 0.00 0.00 0.00 4.79
2873 13050 1.764134 TCGCTCCCCAAATATTACGGT 59.236 47.619 0.00 0.00 0.00 4.83
2874 13051 2.140717 GTCGCTCCCCAAATATTACGG 58.859 52.381 0.00 0.00 0.00 4.02
2875 13052 2.800544 CTGTCGCTCCCCAAATATTACG 59.199 50.000 0.00 0.00 0.00 3.18
2876 13053 2.548480 GCTGTCGCTCCCCAAATATTAC 59.452 50.000 0.00 0.00 0.00 1.89
2877 13054 2.486548 GGCTGTCGCTCCCCAAATATTA 60.487 50.000 0.00 0.00 36.09 0.98
2878 13055 1.680338 GCTGTCGCTCCCCAAATATT 58.320 50.000 0.00 0.00 0.00 1.28
2879 13056 0.179018 GGCTGTCGCTCCCCAAATAT 60.179 55.000 0.00 0.00 36.09 1.28
2880 13057 1.223487 GGCTGTCGCTCCCCAAATA 59.777 57.895 0.00 0.00 36.09 1.40
2881 13058 2.044946 GGCTGTCGCTCCCCAAAT 60.045 61.111 0.00 0.00 36.09 2.32
2882 13059 4.697756 CGGCTGTCGCTCCCCAAA 62.698 66.667 0.00 0.00 36.09 3.28
2901 13078 2.371658 ATTTAATCTGAGGGCAGGCC 57.628 50.000 4.33 4.33 42.53 5.19
2902 13079 4.092116 ACTATTTAATCTGAGGGCAGGC 57.908 45.455 0.00 0.00 42.53 4.85
2903 13080 5.684704 TCAACTATTTAATCTGAGGGCAGG 58.315 41.667 0.00 0.00 42.53 4.85
2904 13081 6.206243 CCATCAACTATTTAATCTGAGGGCAG 59.794 42.308 3.54 0.00 43.67 4.85
2905 13082 6.064060 CCATCAACTATTTAATCTGAGGGCA 58.936 40.000 3.54 0.00 31.93 5.36
2906 13083 6.566197 CCATCAACTATTTAATCTGAGGGC 57.434 41.667 3.54 0.00 31.93 5.19
2907 13084 5.474876 GGCCATCAACTATTTAATCTGAGGG 59.525 44.000 0.00 9.49 40.17 4.30
2908 13085 6.206243 CAGGCCATCAACTATTTAATCTGAGG 59.794 42.308 5.01 0.00 0.00 3.86
2909 13086 6.994496 TCAGGCCATCAACTATTTAATCTGAG 59.006 38.462 5.01 0.00 0.00 3.35
2910 13087 6.899089 TCAGGCCATCAACTATTTAATCTGA 58.101 36.000 5.01 0.00 0.00 3.27
2911 13088 7.500227 TCTTCAGGCCATCAACTATTTAATCTG 59.500 37.037 5.01 0.00 0.00 2.90
2912 13089 7.577303 TCTTCAGGCCATCAACTATTTAATCT 58.423 34.615 5.01 0.00 0.00 2.40
2913 13090 7.521261 GCTCTTCAGGCCATCAACTATTTAATC 60.521 40.741 5.01 0.00 0.00 1.75
2914 13091 6.264067 GCTCTTCAGGCCATCAACTATTTAAT 59.736 38.462 5.01 0.00 0.00 1.40
2915 13092 5.590259 GCTCTTCAGGCCATCAACTATTTAA 59.410 40.000 5.01 0.00 0.00 1.52
2916 13093 5.126067 GCTCTTCAGGCCATCAACTATTTA 58.874 41.667 5.01 0.00 0.00 1.40
2917 13094 3.950395 GCTCTTCAGGCCATCAACTATTT 59.050 43.478 5.01 0.00 0.00 1.40
2918 13095 3.549794 GCTCTTCAGGCCATCAACTATT 58.450 45.455 5.01 0.00 0.00 1.73
2919 13096 2.484417 CGCTCTTCAGGCCATCAACTAT 60.484 50.000 5.01 0.00 0.00 2.12
2920 13097 1.134699 CGCTCTTCAGGCCATCAACTA 60.135 52.381 5.01 0.00 0.00 2.24
2921 13098 0.392193 CGCTCTTCAGGCCATCAACT 60.392 55.000 5.01 0.00 0.00 3.16
2922 13099 1.372087 CCGCTCTTCAGGCCATCAAC 61.372 60.000 5.01 0.00 0.00 3.18
2923 13100 1.078214 CCGCTCTTCAGGCCATCAA 60.078 57.895 5.01 0.00 0.00 2.57
2924 13101 1.340399 ATCCGCTCTTCAGGCCATCA 61.340 55.000 5.01 0.00 0.00 3.07
2925 13102 0.681733 TATCCGCTCTTCAGGCCATC 59.318 55.000 5.01 0.00 0.00 3.51
2926 13103 1.131638 TTATCCGCTCTTCAGGCCAT 58.868 50.000 5.01 0.00 0.00 4.40
2927 13104 1.070758 GATTATCCGCTCTTCAGGCCA 59.929 52.381 5.01 0.00 0.00 5.36
2928 13105 1.346068 AGATTATCCGCTCTTCAGGCC 59.654 52.381 0.00 0.00 0.00 5.19
2929 13106 2.036475 TCAGATTATCCGCTCTTCAGGC 59.964 50.000 0.00 0.00 0.00 4.85
2930 13107 4.038522 TCTTCAGATTATCCGCTCTTCAGG 59.961 45.833 0.00 0.00 0.00 3.86
2931 13108 5.193663 TCTTCAGATTATCCGCTCTTCAG 57.806 43.478 0.00 0.00 0.00 3.02
2932 13109 5.360999 TCTTCTTCAGATTATCCGCTCTTCA 59.639 40.000 0.00 0.00 0.00 3.02
2933 13110 5.689961 GTCTTCTTCAGATTATCCGCTCTTC 59.310 44.000 0.00 0.00 32.60 2.87
2934 13111 5.127845 TGTCTTCTTCAGATTATCCGCTCTT 59.872 40.000 0.00 0.00 32.60 2.85
2935 13112 4.646945 TGTCTTCTTCAGATTATCCGCTCT 59.353 41.667 0.00 0.00 32.60 4.09
2936 13113 4.938080 TGTCTTCTTCAGATTATCCGCTC 58.062 43.478 0.00 0.00 32.60 5.03
2937 13114 5.344743 TTGTCTTCTTCAGATTATCCGCT 57.655 39.130 0.00 0.00 32.60 5.52
2938 13115 6.610741 ATTTGTCTTCTTCAGATTATCCGC 57.389 37.500 0.00 0.00 32.60 5.54
2939 13116 8.879342 AGTATTTGTCTTCTTCAGATTATCCG 57.121 34.615 0.00 0.00 32.60 4.18
2966 13143 9.466497 TGCATTCTTCTTCATAAATAGTCCTTT 57.534 29.630 0.00 0.00 0.00 3.11
2967 13144 9.466497 TTGCATTCTTCTTCATAAATAGTCCTT 57.534 29.630 0.00 0.00 0.00 3.36
2968 13145 8.897752 GTTGCATTCTTCTTCATAAATAGTCCT 58.102 33.333 0.00 0.00 0.00 3.85
2976 13153 7.939782 TCAGTTTGTTGCATTCTTCTTCATAA 58.060 30.769 0.00 0.00 0.00 1.90
2978 13155 6.395426 TCAGTTTGTTGCATTCTTCTTCAT 57.605 33.333 0.00 0.00 0.00 2.57
2979 13156 5.833406 TCAGTTTGTTGCATTCTTCTTCA 57.167 34.783 0.00 0.00 0.00 3.02
2980 13157 5.118203 GCATCAGTTTGTTGCATTCTTCTTC 59.882 40.000 7.12 0.00 41.40 2.87
2981 13158 4.986659 GCATCAGTTTGTTGCATTCTTCTT 59.013 37.500 7.12 0.00 41.40 2.52
2982 13159 4.280174 AGCATCAGTTTGTTGCATTCTTCT 59.720 37.500 12.90 0.00 43.50 2.85
2983 13160 4.553323 AGCATCAGTTTGTTGCATTCTTC 58.447 39.130 12.90 0.00 43.50 2.87
2984 13161 4.595762 AGCATCAGTTTGTTGCATTCTT 57.404 36.364 12.90 0.00 43.50 2.52
2985 13162 4.763793 ACTAGCATCAGTTTGTTGCATTCT 59.236 37.500 12.90 0.00 43.50 2.40
2986 13163 5.051891 ACTAGCATCAGTTTGTTGCATTC 57.948 39.130 12.90 0.00 43.50 2.67
2987 13164 5.458041 AACTAGCATCAGTTTGTTGCATT 57.542 34.783 12.90 3.78 43.50 3.56
2988 13165 6.207417 ACTTAACTAGCATCAGTTTGTTGCAT 59.793 34.615 12.90 3.40 43.50 3.96
2991 13168 7.602644 TCCTACTTAACTAGCATCAGTTTGTTG 59.397 37.037 4.05 5.50 39.45 3.33
2992 13169 7.676947 TCCTACTTAACTAGCATCAGTTTGTT 58.323 34.615 4.05 0.00 39.45 2.83
2993 13170 7.038941 ACTCCTACTTAACTAGCATCAGTTTGT 60.039 37.037 4.05 6.58 39.45 2.83
2994 13171 7.324178 ACTCCTACTTAACTAGCATCAGTTTG 58.676 38.462 4.05 2.01 39.45 2.93
2997 13174 7.614583 TGTTACTCCTACTTAACTAGCATCAGT 59.385 37.037 0.00 0.00 0.00 3.41
2998 13175 7.997482 TGTTACTCCTACTTAACTAGCATCAG 58.003 38.462 0.00 0.00 0.00 2.90
3002 13179 8.357290 TCATTGTTACTCCTACTTAACTAGCA 57.643 34.615 0.00 0.00 0.00 3.49
3003 13180 9.250624 CATCATTGTTACTCCTACTTAACTAGC 57.749 37.037 0.00 0.00 0.00 3.42
3008 15643 7.181305 TCACCCATCATTGTTACTCCTACTTAA 59.819 37.037 0.00 0.00 0.00 1.85
3012 15647 5.353394 TCACCCATCATTGTTACTCCTAC 57.647 43.478 0.00 0.00 0.00 3.18
3015 15650 5.010282 AGTTTCACCCATCATTGTTACTCC 58.990 41.667 0.00 0.00 0.00 3.85
3016 15651 5.705441 TCAGTTTCACCCATCATTGTTACTC 59.295 40.000 0.00 0.00 0.00 2.59
3024 15659 3.831323 TGTGTTCAGTTTCACCCATCAT 58.169 40.909 0.00 0.00 34.14 2.45
3026 15661 5.163622 CCATATGTGTTCAGTTTCACCCATC 60.164 44.000 1.24 0.00 34.14 3.51
3028 15663 4.078537 CCATATGTGTTCAGTTTCACCCA 58.921 43.478 1.24 0.00 34.14 4.51
3029 15664 4.079253 ACCATATGTGTTCAGTTTCACCC 58.921 43.478 1.24 0.00 34.14 4.61
3030 15665 5.938125 AGTACCATATGTGTTCAGTTTCACC 59.062 40.000 1.24 0.00 34.14 4.02
3031 15666 6.649141 TGAGTACCATATGTGTTCAGTTTCAC 59.351 38.462 1.24 0.00 35.43 3.18
3032 15667 6.764379 TGAGTACCATATGTGTTCAGTTTCA 58.236 36.000 1.24 0.00 0.00 2.69
3033 15668 6.183360 GCTGAGTACCATATGTGTTCAGTTTC 60.183 42.308 17.82 6.45 39.25 2.78
3035 15670 5.178797 GCTGAGTACCATATGTGTTCAGTT 58.821 41.667 17.82 0.00 39.25 3.16
3036 15671 4.222810 TGCTGAGTACCATATGTGTTCAGT 59.777 41.667 17.82 6.59 39.25 3.41
3037 15672 4.758688 TGCTGAGTACCATATGTGTTCAG 58.241 43.478 15.03 15.03 39.67 3.02
3039 15674 4.568359 CACTGCTGAGTACCATATGTGTTC 59.432 45.833 1.24 0.00 0.00 3.18
3041 15676 3.118629 CCACTGCTGAGTACCATATGTGT 60.119 47.826 1.24 2.24 0.00 3.72
3044 15679 2.487934 GCCACTGCTGAGTACCATATG 58.512 52.381 0.00 0.00 33.53 1.78
3045 15680 1.417890 GGCCACTGCTGAGTACCATAT 59.582 52.381 0.00 0.00 37.74 1.78
3046 15681 0.830648 GGCCACTGCTGAGTACCATA 59.169 55.000 0.00 0.00 37.74 2.74
3047 15682 1.200760 TGGCCACTGCTGAGTACCAT 61.201 55.000 0.00 0.00 34.26 3.55
3048 15683 1.830587 CTGGCCACTGCTGAGTACCA 61.831 60.000 0.00 0.00 35.97 3.25
3049 15684 1.078848 CTGGCCACTGCTGAGTACC 60.079 63.158 0.00 0.00 37.74 3.34
3051 15686 2.293318 CCCTGGCCACTGCTGAGTA 61.293 63.158 0.00 0.00 37.74 2.59
3052 15687 3.644606 CCCTGGCCACTGCTGAGT 61.645 66.667 0.00 0.00 37.74 3.41
3053 15688 4.421515 CCCCTGGCCACTGCTGAG 62.422 72.222 0.00 0.00 37.74 3.35
3065 15700 2.142356 TGTGAACATTATGGCCCCTG 57.858 50.000 0.00 0.00 0.00 4.45
3066 15701 2.515429 AGATGTGAACATTATGGCCCCT 59.485 45.455 0.00 0.00 36.57 4.79
3067 15702 2.949447 AGATGTGAACATTATGGCCCC 58.051 47.619 0.00 0.00 36.57 5.80
3068 15703 3.491447 GCAAGATGTGAACATTATGGCCC 60.491 47.826 0.00 0.00 36.57 5.80
3069 15704 3.491447 GGCAAGATGTGAACATTATGGCC 60.491 47.826 17.65 14.33 39.52 5.36
3070 15705 3.130869 TGGCAAGATGTGAACATTATGGC 59.869 43.478 19.85 19.85 42.50 4.40
3071 15706 4.987408 TGGCAAGATGTGAACATTATGG 57.013 40.909 0.00 0.00 36.57 2.74
3072 15707 6.139048 TGATGGCAAGATGTGAACATTATG 57.861 37.500 0.00 1.91 36.57 1.90
3073 15708 5.221185 GCTGATGGCAAGATGTGAACATTAT 60.221 40.000 0.00 0.00 41.35 1.28
3076 15711 2.426024 GCTGATGGCAAGATGTGAACAT 59.574 45.455 0.00 0.00 41.35 2.71
3077 15712 1.814394 GCTGATGGCAAGATGTGAACA 59.186 47.619 0.00 0.00 41.35 3.18
3078 15713 2.089980 AGCTGATGGCAAGATGTGAAC 58.910 47.619 0.00 0.00 44.79 3.18
3079 15714 2.502142 AGCTGATGGCAAGATGTGAA 57.498 45.000 0.00 0.00 44.79 3.18
3080 15715 2.502142 AAGCTGATGGCAAGATGTGA 57.498 45.000 0.00 0.00 44.79 3.58
3082 15717 4.951715 TGATAAAAGCTGATGGCAAGATGT 59.048 37.500 0.00 0.00 44.79 3.06
3084 15719 5.597182 ACATGATAAAAGCTGATGGCAAGAT 59.403 36.000 0.00 0.00 44.79 2.40
3086 15721 5.163591 TGACATGATAAAAGCTGATGGCAAG 60.164 40.000 0.00 0.00 44.79 4.01
3089 15724 4.604976 GTGACATGATAAAAGCTGATGGC 58.395 43.478 0.00 0.00 42.19 4.40
3090 15725 4.571984 TCGTGACATGATAAAAGCTGATGG 59.428 41.667 0.00 0.00 0.00 3.51
3091 15726 5.723492 TCGTGACATGATAAAAGCTGATG 57.277 39.130 0.00 0.00 0.00 3.07
3092 15727 5.277683 GCATCGTGACATGATAAAAGCTGAT 60.278 40.000 9.84 0.00 0.00 2.90
3093 15728 4.034394 GCATCGTGACATGATAAAAGCTGA 59.966 41.667 9.84 0.00 0.00 4.26
3094 15729 4.201841 TGCATCGTGACATGATAAAAGCTG 60.202 41.667 9.84 0.00 0.00 4.24
3095 15730 3.940852 TGCATCGTGACATGATAAAAGCT 59.059 39.130 9.84 0.00 0.00 3.74
3096 15731 4.031028 GTGCATCGTGACATGATAAAAGC 58.969 43.478 9.84 9.71 0.00 3.51
3097 15732 5.260900 CAGTGCATCGTGACATGATAAAAG 58.739 41.667 9.84 0.00 0.00 2.27
3099 15734 3.622612 CCAGTGCATCGTGACATGATAAA 59.377 43.478 9.84 0.00 0.00 1.40
3100 15735 3.118811 TCCAGTGCATCGTGACATGATAA 60.119 43.478 9.84 0.00 0.00 1.75
3101 15736 2.430332 TCCAGTGCATCGTGACATGATA 59.570 45.455 9.84 0.00 0.00 2.15
3102 15737 1.207811 TCCAGTGCATCGTGACATGAT 59.792 47.619 4.22 4.22 0.00 2.45
3103 15738 0.607620 TCCAGTGCATCGTGACATGA 59.392 50.000 0.00 0.00 0.00 3.07
3104 15739 1.004595 CTCCAGTGCATCGTGACATG 58.995 55.000 0.00 0.00 0.00 3.21
3105 15740 0.107993 CCTCCAGTGCATCGTGACAT 60.108 55.000 0.00 0.00 0.00 3.06
3106 15741 1.293179 CCTCCAGTGCATCGTGACA 59.707 57.895 0.00 0.00 0.00 3.58
3107 15742 2.103042 GCCTCCAGTGCATCGTGAC 61.103 63.158 0.00 0.00 0.00 3.67
3108 15743 2.265739 GCCTCCAGTGCATCGTGA 59.734 61.111 0.00 0.00 0.00 4.35
3109 15744 2.046988 TGCCTCCAGTGCATCGTG 60.047 61.111 0.00 0.00 32.85 4.35
3110 15745 2.236223 CTCTGCCTCCAGTGCATCGT 62.236 60.000 0.00 0.00 40.09 3.73
3112 15747 0.469070 ATCTCTGCCTCCAGTGCATC 59.531 55.000 0.00 0.00 40.09 3.91
3113 15748 0.917533 AATCTCTGCCTCCAGTGCAT 59.082 50.000 0.00 0.00 40.09 3.96
3115 15750 0.540923 AGAATCTCTGCCTCCAGTGC 59.459 55.000 0.00 0.00 40.09 4.40
3116 15751 2.312722 CAGAATCTCTGCCTCCAGTG 57.687 55.000 0.00 0.00 37.72 3.66
3140 16109 1.873486 GCCAGCGCCAAACTTTCAATT 60.873 47.619 2.29 0.00 0.00 2.32
3141 16110 0.319813 GCCAGCGCCAAACTTTCAAT 60.320 50.000 2.29 0.00 0.00 2.57
3147 16116 0.830648 TATCTAGCCAGCGCCAAACT 59.169 50.000 2.29 0.00 34.57 2.66
3148 16117 1.663695 TTATCTAGCCAGCGCCAAAC 58.336 50.000 2.29 0.00 34.57 2.93
3149 16118 2.221169 CATTATCTAGCCAGCGCCAAA 58.779 47.619 2.29 0.00 34.57 3.28
3151 16120 0.035317 CCATTATCTAGCCAGCGCCA 59.965 55.000 2.29 0.00 34.57 5.69
3152 16121 0.321671 TCCATTATCTAGCCAGCGCC 59.678 55.000 2.29 0.00 34.57 6.53
3153 16122 1.001406 ACTCCATTATCTAGCCAGCGC 59.999 52.381 0.00 0.00 0.00 5.92
3154 16123 4.521130 TTACTCCATTATCTAGCCAGCG 57.479 45.455 0.00 0.00 0.00 5.18
3155 16124 6.293004 AGATTACTCCATTATCTAGCCAGC 57.707 41.667 0.00 0.00 0.00 4.85
3156 16125 7.327214 GGAAGATTACTCCATTATCTAGCCAG 58.673 42.308 0.00 0.00 0.00 4.85
3157 16126 6.213600 GGGAAGATTACTCCATTATCTAGCCA 59.786 42.308 0.00 0.00 30.54 4.75
3158 16127 6.213600 TGGGAAGATTACTCCATTATCTAGCC 59.786 42.308 0.00 0.00 0.00 3.93
3159 16128 7.246171 TGGGAAGATTACTCCATTATCTAGC 57.754 40.000 0.00 0.00 0.00 3.42
3160 16129 9.664332 CAATGGGAAGATTACTCCATTATCTAG 57.336 37.037 6.17 0.00 45.14 2.43
3162 16131 8.050316 ACAATGGGAAGATTACTCCATTATCT 57.950 34.615 6.17 0.00 45.14 1.98
3167 16136 6.831664 ACTACAATGGGAAGATTACTCCAT 57.168 37.500 0.00 0.00 41.31 3.41
3169 16138 6.650120 TCAACTACAATGGGAAGATTACTCC 58.350 40.000 0.00 0.00 0.00 3.85
3171 16140 7.038302 TCACTCAACTACAATGGGAAGATTACT 60.038 37.037 0.00 0.00 0.00 2.24
3172 16141 7.064728 GTCACTCAACTACAATGGGAAGATTAC 59.935 40.741 0.00 0.00 0.00 1.89
3174 16143 5.940470 GTCACTCAACTACAATGGGAAGATT 59.060 40.000 0.00 0.00 0.00 2.40
3176 16145 4.593206 AGTCACTCAACTACAATGGGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
3179 16148 3.901222 TGAGTCACTCAACTACAATGGGA 59.099 43.478 4.55 0.00 37.57 4.37
3180 16149 4.271696 TGAGTCACTCAACTACAATGGG 57.728 45.455 4.55 0.00 37.57 4.00
3190 16159 4.402474 TCTGAGTCAAGTTGAGTCACTCAA 59.598 41.667 30.90 16.67 46.53 3.02
3191 16160 3.954258 TCTGAGTCAAGTTGAGTCACTCA 59.046 43.478 30.90 24.48 46.53 3.41
3192 16161 4.037446 AGTCTGAGTCAAGTTGAGTCACTC 59.963 45.833 30.90 25.29 46.53 3.51
3194 16163 4.047822 CAGTCTGAGTCAAGTTGAGTCAC 58.952 47.826 30.90 23.83 46.53 3.67
3197 16166 4.744795 AACAGTCTGAGTCAAGTTGAGT 57.255 40.909 13.12 13.12 31.62 3.41
3198 16167 4.272018 CCAAACAGTCTGAGTCAAGTTGAG 59.728 45.833 5.62 0.00 0.00 3.02
3199 16168 4.081142 TCCAAACAGTCTGAGTCAAGTTGA 60.081 41.667 6.91 0.08 0.00 3.18
3200 16169 4.191544 TCCAAACAGTCTGAGTCAAGTTG 58.808 43.478 6.91 0.00 0.00 3.16
3201 16170 4.487714 TCCAAACAGTCTGAGTCAAGTT 57.512 40.909 6.91 0.00 0.00 2.66
3203 16172 4.635765 TGTTTCCAAACAGTCTGAGTCAAG 59.364 41.667 6.91 0.00 43.45 3.02
3205 16174 4.214986 TGTTTCCAAACAGTCTGAGTCA 57.785 40.909 6.91 0.00 43.45 3.41
3217 16186 9.745018 AAATCTTCATCTATCTCTGTTTCCAAA 57.255 29.630 0.00 0.00 0.00 3.28
3218 16187 9.170734 CAAATCTTCATCTATCTCTGTTTCCAA 57.829 33.333 0.00 0.00 0.00 3.53
3219 16188 7.281774 GCAAATCTTCATCTATCTCTGTTTCCA 59.718 37.037 0.00 0.00 0.00 3.53
3220 16189 7.498570 AGCAAATCTTCATCTATCTCTGTTTCC 59.501 37.037 0.00 0.00 0.00 3.13
3221 16190 8.436046 AGCAAATCTTCATCTATCTCTGTTTC 57.564 34.615 0.00 0.00 0.00 2.78
3222 16191 8.804912 AAGCAAATCTTCATCTATCTCTGTTT 57.195 30.769 0.00 0.00 0.00 2.83
3224 16193 8.266473 AGAAAGCAAATCTTCATCTATCTCTGT 58.734 33.333 0.00 0.00 32.88 3.41
3225 16194 8.665643 AGAAAGCAAATCTTCATCTATCTCTG 57.334 34.615 0.00 0.00 32.88 3.35
3241 16771 8.303156 TCCGAATTCATGAATTAAGAAAGCAAA 58.697 29.630 29.05 7.21 40.77 3.68
3244 16774 7.218963 GTGTCCGAATTCATGAATTAAGAAAGC 59.781 37.037 29.05 17.56 40.77 3.51
3252 16782 3.758023 TGCTGTGTCCGAATTCATGAATT 59.242 39.130 29.31 29.31 43.14 2.17
3253 16783 3.346315 TGCTGTGTCCGAATTCATGAAT 58.654 40.909 15.36 15.36 0.00 2.57
3254 16784 2.777094 TGCTGTGTCCGAATTCATGAA 58.223 42.857 11.26 11.26 0.00 2.57
3255 16785 2.470983 TGCTGTGTCCGAATTCATGA 57.529 45.000 6.22 0.00 0.00 3.07
3256 16786 2.223409 CCATGCTGTGTCCGAATTCATG 60.223 50.000 6.22 0.00 0.00 3.07
3257 16787 2.019249 CCATGCTGTGTCCGAATTCAT 58.981 47.619 6.22 0.00 0.00 2.57
3258 16788 1.452110 CCATGCTGTGTCCGAATTCA 58.548 50.000 6.22 0.00 0.00 2.57
3259 16789 0.099436 GCCATGCTGTGTCCGAATTC 59.901 55.000 0.00 0.00 0.00 2.17
3260 16790 0.608856 TGCCATGCTGTGTCCGAATT 60.609 50.000 0.00 0.00 0.00 2.17
3261 16791 1.002257 TGCCATGCTGTGTCCGAAT 60.002 52.632 0.00 0.00 0.00 3.34
3262 16792 1.672030 CTGCCATGCTGTGTCCGAA 60.672 57.895 0.00 0.00 0.00 4.30
3263 16793 2.046988 CTGCCATGCTGTGTCCGA 60.047 61.111 0.00 0.00 0.00 4.55
3266 16796 1.302752 TGTCCTGCCATGCTGTGTC 60.303 57.895 0.00 0.00 0.00 3.67
3267 16797 1.303074 CTGTCCTGCCATGCTGTGT 60.303 57.895 0.00 0.00 0.00 3.72
3268 16798 0.607217 TTCTGTCCTGCCATGCTGTG 60.607 55.000 0.00 0.00 0.00 3.66
3269 16799 0.607489 GTTCTGTCCTGCCATGCTGT 60.607 55.000 0.00 0.00 0.00 4.40
3270 16800 0.607217 TGTTCTGTCCTGCCATGCTG 60.607 55.000 0.00 0.00 0.00 4.41
3271 16801 0.607489 GTGTTCTGTCCTGCCATGCT 60.607 55.000 0.00 0.00 0.00 3.79
3272 16802 0.607489 AGTGTTCTGTCCTGCCATGC 60.607 55.000 0.00 0.00 0.00 4.06
3274 16804 2.260822 ACTAGTGTTCTGTCCTGCCAT 58.739 47.619 0.00 0.00 0.00 4.40
3275 16805 1.717032 ACTAGTGTTCTGTCCTGCCA 58.283 50.000 0.00 0.00 0.00 4.92
3276 16806 4.473477 AATACTAGTGTTCTGTCCTGCC 57.527 45.455 5.39 0.00 0.00 4.85
3277 16807 6.127703 TGAGTAATACTAGTGTTCTGTCCTGC 60.128 42.308 8.28 0.00 0.00 4.85
3278 16808 7.392494 TGAGTAATACTAGTGTTCTGTCCTG 57.608 40.000 8.28 0.00 0.00 3.86
3281 16811 7.221067 GCACATGAGTAATACTAGTGTTCTGTC 59.779 40.741 8.28 5.13 32.00 3.51
3282 16812 7.036220 GCACATGAGTAATACTAGTGTTCTGT 58.964 38.462 8.28 3.98 32.00 3.41
3283 16813 6.197282 CGCACATGAGTAATACTAGTGTTCTG 59.803 42.308 8.28 3.43 32.00 3.02
3285 16815 6.034591 ACGCACATGAGTAATACTAGTGTTC 58.965 40.000 8.28 8.61 32.00 3.18
3286 16816 5.962433 ACGCACATGAGTAATACTAGTGTT 58.038 37.500 9.95 9.95 32.00 3.32
3287 16817 5.578005 ACGCACATGAGTAATACTAGTGT 57.422 39.130 5.39 11.14 32.00 3.55
3288 16818 6.033966 TCAACGCACATGAGTAATACTAGTG 58.966 40.000 5.39 12.74 32.32 2.74
3289 16819 6.203808 TCAACGCACATGAGTAATACTAGT 57.796 37.500 0.00 0.00 0.00 2.57
3290 16820 6.697455 ACATCAACGCACATGAGTAATACTAG 59.303 38.462 0.00 0.00 0.00 2.57
3292 16822 5.419542 ACATCAACGCACATGAGTAATACT 58.580 37.500 0.00 0.00 0.00 2.12
3293 16823 5.290885 TGACATCAACGCACATGAGTAATAC 59.709 40.000 0.00 0.00 0.00 1.89
3294 16824 5.415221 TGACATCAACGCACATGAGTAATA 58.585 37.500 0.00 0.00 0.00 0.98
3295 16825 4.252878 TGACATCAACGCACATGAGTAAT 58.747 39.130 0.00 0.00 0.00 1.89
3298 16828 2.168326 TGACATCAACGCACATGAGT 57.832 45.000 0.00 0.00 0.00 3.41
3299 16829 3.541071 TTTGACATCAACGCACATGAG 57.459 42.857 0.00 0.00 35.28 2.90
3300 16830 3.314913 AGTTTTGACATCAACGCACATGA 59.685 39.130 0.00 0.00 35.28 3.07
3301 16831 3.631144 AGTTTTGACATCAACGCACATG 58.369 40.909 0.00 0.00 35.28 3.21
3303 16833 2.942376 AGAGTTTTGACATCAACGCACA 59.058 40.909 0.00 0.00 35.28 4.57
3304 16834 3.242739 ACAGAGTTTTGACATCAACGCAC 60.243 43.478 0.00 0.00 35.28 5.34
3305 16835 2.942376 ACAGAGTTTTGACATCAACGCA 59.058 40.909 0.00 0.00 35.28 5.24
3307 16837 5.621228 GCTTTACAGAGTTTTGACATCAACG 59.379 40.000 0.00 0.00 35.28 4.10
3308 16838 6.729187 AGCTTTACAGAGTTTTGACATCAAC 58.271 36.000 0.00 0.00 35.28 3.18
3309 16839 6.942532 AGCTTTACAGAGTTTTGACATCAA 57.057 33.333 0.00 0.00 0.00 2.57
3310 16840 9.890629 ATATAGCTTTACAGAGTTTTGACATCA 57.109 29.630 0.00 0.00 0.00 3.07
3315 16845 9.817809 CCAGTATATAGCTTTACAGAGTTTTGA 57.182 33.333 0.00 0.00 0.00 2.69
3316 16846 9.601217 ACCAGTATATAGCTTTACAGAGTTTTG 57.399 33.333 0.00 0.00 0.00 2.44
3317 16847 9.601217 CACCAGTATATAGCTTTACAGAGTTTT 57.399 33.333 0.00 0.00 0.00 2.43
3321 16851 9.019656 AGATCACCAGTATATAGCTTTACAGAG 57.980 37.037 0.00 0.00 0.00 3.35
3322 16852 8.941995 AGATCACCAGTATATAGCTTTACAGA 57.058 34.615 0.00 0.00 0.00 3.41
3326 16856 9.769677 ACCATAGATCACCAGTATATAGCTTTA 57.230 33.333 0.00 0.00 0.00 1.85
3328 16858 9.415008 CTACCATAGATCACCAGTATATAGCTT 57.585 37.037 0.00 0.00 0.00 3.74
3329 16859 8.782927 TCTACCATAGATCACCAGTATATAGCT 58.217 37.037 0.00 0.00 0.00 3.32
3330 16860 8.982091 TCTACCATAGATCACCAGTATATAGC 57.018 38.462 0.00 0.00 0.00 2.97
3334 16864 8.445588 TGAGTTCTACCATAGATCACCAGTATA 58.554 37.037 0.00 0.00 34.22 1.47
3336 16866 6.669631 TGAGTTCTACCATAGATCACCAGTA 58.330 40.000 0.00 0.00 34.22 2.74
3337 16867 5.519808 TGAGTTCTACCATAGATCACCAGT 58.480 41.667 0.00 0.00 34.22 4.00
3338 16868 6.127338 TGTTGAGTTCTACCATAGATCACCAG 60.127 42.308 0.00 0.00 34.22 4.00
3339 16869 5.719563 TGTTGAGTTCTACCATAGATCACCA 59.280 40.000 0.00 0.00 34.22 4.17
3341 16871 5.751028 GCTGTTGAGTTCTACCATAGATCAC 59.249 44.000 0.00 0.00 34.22 3.06
3342 16872 5.450550 CGCTGTTGAGTTCTACCATAGATCA 60.451 44.000 0.00 0.00 34.22 2.92
3343 16873 4.979197 CGCTGTTGAGTTCTACCATAGATC 59.021 45.833 0.00 0.00 34.22 2.75
3344 16874 4.737946 GCGCTGTTGAGTTCTACCATAGAT 60.738 45.833 0.00 0.00 34.22 1.98
3345 16875 3.428999 GCGCTGTTGAGTTCTACCATAGA 60.429 47.826 0.00 0.00 0.00 1.98
3346 16876 2.860735 GCGCTGTTGAGTTCTACCATAG 59.139 50.000 0.00 0.00 0.00 2.23
3348 16878 1.001974 TGCGCTGTTGAGTTCTACCAT 59.998 47.619 9.73 0.00 0.00 3.55
3350 16880 0.790814 GTGCGCTGTTGAGTTCTACC 59.209 55.000 9.73 0.00 0.00 3.18
3351 16881 1.457303 CAGTGCGCTGTTGAGTTCTAC 59.543 52.381 19.30 0.00 37.92 2.59
3352 16882 1.783284 CAGTGCGCTGTTGAGTTCTA 58.217 50.000 19.30 0.00 37.92 2.10
3353 16883 2.609825 CAGTGCGCTGTTGAGTTCT 58.390 52.632 19.30 0.00 37.92 3.01
3363 16893 0.031585 TAACAAGACGACAGTGCGCT 59.968 50.000 9.73 0.00 33.86 5.92
3364 16894 2.513159 TAACAAGACGACAGTGCGC 58.487 52.632 0.00 0.00 33.86 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.