Multiple sequence alignment - TraesCS3A01G044400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G044400 chr3A 100.000 4230 0 0 1 4230 23899850 23904079 0.000000e+00 7812.0
1 TraesCS3A01G044400 chr3A 91.250 240 16 1 1 240 674493223 674492989 5.280000e-84 322.0
2 TraesCS3A01G044400 chr3A 83.019 106 8 6 9 112 731024282 731024379 2.100000e-13 87.9
3 TraesCS3A01G044400 chr3D 85.982 2083 180 72 1240 3277 13212587 13210572 0.000000e+00 2126.0
4 TraesCS3A01G044400 chr3D 84.354 147 15 8 261 404 124646051 124645910 2.050000e-28 137.0
5 TraesCS3A01G044400 chr1D 95.266 866 41 0 3300 4165 19428485 19427620 0.000000e+00 1373.0
6 TraesCS3A01G044400 chr1D 94.342 866 49 0 3300 4165 99649267 99648402 0.000000e+00 1328.0
7 TraesCS3A01G044400 chr1D 90.411 73 7 0 4158 4230 479606584 479606512 3.480000e-16 97.1
8 TraesCS3A01G044400 chr5D 95.029 865 43 0 3301 4165 545543281 545542417 0.000000e+00 1360.0
9 TraesCS3A01G044400 chr5D 90.947 243 17 1 1 243 447418795 447418558 5.280000e-84 322.0
10 TraesCS3A01G044400 chr5D 94.118 68 4 0 4158 4225 545542395 545542328 2.080000e-18 104.0
11 TraesCS3A01G044400 chr5D 83.333 78 13 0 253 330 335105209 335105132 5.870000e-09 73.1
12 TraesCS3A01G044400 chr4A 94.839 872 43 2 3295 4165 603495695 603494825 0.000000e+00 1360.0
13 TraesCS3A01G044400 chr4A 94.118 68 4 0 4158 4225 696727598 696727665 2.080000e-18 104.0
14 TraesCS3A01G044400 chr7D 94.737 874 41 3 3296 4165 14899462 14898590 0.000000e+00 1354.0
15 TraesCS3A01G044400 chr7D 91.322 242 12 4 1 242 9205689 9205457 5.280000e-84 322.0
16 TraesCS3A01G044400 chr7D 91.429 70 6 0 4158 4227 17235604 17235535 3.480000e-16 97.1
17 TraesCS3A01G044400 chr4D 94.731 873 43 3 3294 4165 3663076 3662206 0.000000e+00 1354.0
18 TraesCS3A01G044400 chr6A 94.560 864 43 3 3300 4162 555757480 555758340 0.000000e+00 1332.0
19 TraesCS3A01G044400 chr5A 94.050 874 50 2 3293 4165 668165843 668166715 0.000000e+00 1325.0
20 TraesCS3A01G044400 chr5A 82.353 510 88 2 2462 2970 701963854 701963346 3.880000e-120 442.0
21 TraesCS3A01G044400 chr5A 90.667 75 7 0 1048 1122 701965322 701965248 2.690000e-17 100.0
22 TraesCS3A01G044400 chr5A 84.146 82 13 0 249 330 436577647 436577566 3.510000e-11 80.5
23 TraesCS3A01G044400 chr7A 94.124 868 49 2 3299 4165 19816016 19815150 0.000000e+00 1319.0
24 TraesCS3A01G044400 chr7A 82.270 987 105 41 3293 4227 23114283 23113315 0.000000e+00 789.0
25 TraesCS3A01G044400 chr7A 85.321 109 12 4 5 110 108504652 108504545 4.470000e-20 110.0
26 TraesCS3A01G044400 chr3B 89.526 907 75 8 2265 3163 19041928 19041034 0.000000e+00 1131.0
27 TraesCS3A01G044400 chr3B 89.077 769 64 14 241 993 19154047 19153283 0.000000e+00 937.0
28 TraesCS3A01G044400 chr3B 83.486 654 59 20 1576 2186 19043104 19042457 7.940000e-157 564.0
29 TraesCS3A01G044400 chr3B 88.696 460 39 7 2829 3288 19037059 19036613 2.220000e-152 549.0
30 TraesCS3A01G044400 chr3B 89.306 346 23 8 540 872 19068899 19068555 5.060000e-114 422.0
31 TraesCS3A01G044400 chr3B 90.909 220 14 2 1174 1387 19047217 19046998 1.490000e-74 291.0
32 TraesCS3A01G044400 chr3B 87.892 223 21 3 3066 3288 19005962 19005746 1.510000e-64 257.0
33 TraesCS3A01G044400 chr3B 87.444 223 22 3 3066 3288 18967093 18966877 7.020000e-63 252.0
34 TraesCS3A01G044400 chr3B 84.236 203 21 7 1 198 797627983 797627787 2.010000e-43 187.0
35 TraesCS3A01G044400 chr3B 96.341 82 3 0 1041 1122 19049116 19049035 7.380000e-28 135.0
36 TraesCS3A01G044400 chr3B 100.000 40 0 0 240 279 19068943 19068904 1.630000e-09 75.0
37 TraesCS3A01G044400 chr7B 82.811 989 111 32 3291 4230 686976006 686975028 0.000000e+00 830.0
38 TraesCS3A01G044400 chr7B 94.118 68 4 0 4158 4225 553080947 553081014 2.080000e-18 104.0
39 TraesCS3A01G044400 chrUn 82.549 510 87 2 2462 2970 111193017 111192509 8.340000e-122 448.0
40 TraesCS3A01G044400 chr4B 79.961 509 93 2 2462 2970 661186472 661185973 2.400000e-97 366.0
41 TraesCS3A01G044400 chr4B 79.518 498 98 4 2456 2951 662080848 662081343 6.730000e-93 351.0
42 TraesCS3A01G044400 chr4B 78.571 518 105 5 2456 2970 661168982 661168468 1.880000e-88 337.0
43 TraesCS3A01G044400 chr4B 74.204 314 64 14 1042 1347 661191450 661191146 9.610000e-22 115.0
44 TraesCS3A01G044400 chr4B 91.429 70 6 0 4158 4227 605782567 605782636 3.480000e-16 97.1
45 TraesCS3A01G044400 chr1B 90.909 242 17 1 1 242 26584174 26583938 1.900000e-83 320.0
46 TraesCS3A01G044400 chr6D 88.933 253 20 3 1 253 6753574 6753330 5.310000e-79 305.0
47 TraesCS3A01G044400 chr2B 92.708 96 6 1 6 100 697553823 697553728 2.050000e-28 137.0
48 TraesCS3A01G044400 chr6B 91.781 73 6 0 4158 4230 92013800 92013728 7.480000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G044400 chr3A 23899850 23904079 4229 False 7812 7812 100.0000 1 4230 1 chr3A.!!$F1 4229
1 TraesCS3A01G044400 chr3D 13210572 13212587 2015 True 2126 2126 85.9820 1240 3277 1 chr3D.!!$R1 2037
2 TraesCS3A01G044400 chr1D 19427620 19428485 865 True 1373 1373 95.2660 3300 4165 1 chr1D.!!$R1 865
3 TraesCS3A01G044400 chr1D 99648402 99649267 865 True 1328 1328 94.3420 3300 4165 1 chr1D.!!$R2 865
4 TraesCS3A01G044400 chr5D 545542328 545543281 953 True 732 1360 94.5735 3301 4225 2 chr5D.!!$R3 924
5 TraesCS3A01G044400 chr4A 603494825 603495695 870 True 1360 1360 94.8390 3295 4165 1 chr4A.!!$R1 870
6 TraesCS3A01G044400 chr7D 14898590 14899462 872 True 1354 1354 94.7370 3296 4165 1 chr7D.!!$R2 869
7 TraesCS3A01G044400 chr4D 3662206 3663076 870 True 1354 1354 94.7310 3294 4165 1 chr4D.!!$R1 871
8 TraesCS3A01G044400 chr6A 555757480 555758340 860 False 1332 1332 94.5600 3300 4162 1 chr6A.!!$F1 862
9 TraesCS3A01G044400 chr5A 668165843 668166715 872 False 1325 1325 94.0500 3293 4165 1 chr5A.!!$F1 872
10 TraesCS3A01G044400 chr5A 701963346 701965322 1976 True 271 442 86.5100 1048 2970 2 chr5A.!!$R2 1922
11 TraesCS3A01G044400 chr7A 19815150 19816016 866 True 1319 1319 94.1240 3299 4165 1 chr7A.!!$R1 866
12 TraesCS3A01G044400 chr7A 23113315 23114283 968 True 789 789 82.2700 3293 4227 1 chr7A.!!$R2 934
13 TraesCS3A01G044400 chr3B 19153283 19154047 764 True 937 937 89.0770 241 993 1 chr3B.!!$R3 752
14 TraesCS3A01G044400 chr3B 19036613 19049116 12503 True 534 1131 89.7916 1041 3288 5 chr3B.!!$R5 2247
15 TraesCS3A01G044400 chr7B 686975028 686976006 978 True 830 830 82.8110 3291 4230 1 chr7B.!!$R1 939
16 TraesCS3A01G044400 chrUn 111192509 111193017 508 True 448 448 82.5490 2462 2970 1 chrUn.!!$R1 508
17 TraesCS3A01G044400 chr4B 661168468 661168982 514 True 337 337 78.5710 2456 2970 1 chr4B.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 870 0.539051 AAATGGCTGTCTCCTCTCGG 59.461 55.0 0.0 0.0 0.0 4.63 F
1408 3203 0.096976 CATGACGAAATGCCACGGAC 59.903 55.0 0.0 0.0 0.0 4.79 F
1409 3204 0.321210 ATGACGAAATGCCACGGACA 60.321 50.0 0.0 0.0 0.0 4.02 F
3045 13685 0.445829 TGTCTGTTGTGTTGTGTGCG 59.554 50.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 7296 0.106268 TTTCCAGCCCTTGTTCAGCA 60.106 50.000 0.0 0.0 0.00 4.41 R
3031 9376 0.733729 TAACCCGCACACAACACAAC 59.266 50.000 0.0 0.0 0.00 3.32 R
3138 13779 1.160989 TTGCCGCGAAAGAGCAAATA 58.839 45.000 15.7 0.0 45.02 1.40 R
3863 14539 1.302511 GGCGTCATCAAGGGTGTGT 60.303 57.895 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.953559 GGCGGATGATTTGAGCTACA 58.046 50.000 0.00 0.00 0.00 2.74
20 21 2.288666 GGCGGATGATTTGAGCTACAA 58.711 47.619 0.00 0.00 36.65 2.41
56 57 7.992180 TTTTGAGTCTTGAAAAAGAATCTGC 57.008 32.000 14.67 0.00 42.50 4.26
57 58 6.949352 TTGAGTCTTGAAAAAGAATCTGCT 57.051 33.333 14.67 0.00 42.50 4.24
58 59 6.309712 TGAGTCTTGAAAAAGAATCTGCTG 57.690 37.500 14.67 0.00 42.50 4.41
59 60 6.057533 TGAGTCTTGAAAAAGAATCTGCTGA 58.942 36.000 14.67 0.00 42.50 4.26
60 61 6.017605 TGAGTCTTGAAAAAGAATCTGCTGAC 60.018 38.462 14.67 0.00 42.50 3.51
61 62 5.824624 AGTCTTGAAAAAGAATCTGCTGACA 59.175 36.000 0.00 0.00 0.00 3.58
62 63 6.489361 AGTCTTGAAAAAGAATCTGCTGACAT 59.511 34.615 0.00 0.00 0.00 3.06
63 64 6.800892 GTCTTGAAAAAGAATCTGCTGACATC 59.199 38.462 0.00 0.00 0.00 3.06
64 65 6.487668 TCTTGAAAAAGAATCTGCTGACATCA 59.512 34.615 0.00 0.00 0.00 3.07
65 66 6.829229 TGAAAAAGAATCTGCTGACATCAT 57.171 33.333 0.00 0.00 0.00 2.45
66 67 6.849502 TGAAAAAGAATCTGCTGACATCATC 58.150 36.000 0.00 0.00 0.00 2.92
67 68 6.431852 TGAAAAAGAATCTGCTGACATCATCA 59.568 34.615 0.00 0.27 35.45 3.07
99 100 7.830940 TTTTTCTTGCATGCATGTAATTAGG 57.169 32.000 27.16 16.96 32.10 2.69
100 101 6.528537 TTTCTTGCATGCATGTAATTAGGT 57.471 33.333 27.16 0.00 32.10 3.08
101 102 6.528537 TTCTTGCATGCATGTAATTAGGTT 57.471 33.333 27.16 0.00 32.10 3.50
102 103 6.135290 TCTTGCATGCATGTAATTAGGTTC 57.865 37.500 27.16 8.43 32.10 3.62
103 104 5.887598 TCTTGCATGCATGTAATTAGGTTCT 59.112 36.000 27.16 0.00 32.10 3.01
104 105 7.053498 TCTTGCATGCATGTAATTAGGTTCTA 58.947 34.615 27.16 4.69 32.10 2.10
105 106 7.555914 TCTTGCATGCATGTAATTAGGTTCTAA 59.444 33.333 27.16 4.20 32.10 2.10
106 107 7.822161 TGCATGCATGTAATTAGGTTCTAAT 57.178 32.000 26.79 0.00 0.00 1.73
107 108 8.236585 TGCATGCATGTAATTAGGTTCTAATT 57.763 30.769 26.79 14.72 0.00 1.40
108 109 9.348476 TGCATGCATGTAATTAGGTTCTAATTA 57.652 29.630 26.79 13.16 0.00 1.40
147 148 6.869421 AAACACATATAAAAAGATGCACGC 57.131 33.333 0.00 0.00 0.00 5.34
148 149 5.559427 ACACATATAAAAAGATGCACGCA 57.441 34.783 0.00 0.00 0.00 5.24
149 150 6.135290 ACACATATAAAAAGATGCACGCAT 57.865 33.333 3.71 3.71 39.69 4.73
150 151 5.972973 ACACATATAAAAAGATGCACGCATG 59.027 36.000 9.70 0.00 36.70 4.06
160 161 3.594568 CACGCATGCATGGAAGGT 58.405 55.556 27.34 2.04 0.00 3.50
161 162 1.430632 CACGCATGCATGGAAGGTC 59.569 57.895 27.34 9.08 0.00 3.85
162 163 1.002257 ACGCATGCATGGAAGGTCA 60.002 52.632 27.34 0.00 0.00 4.02
163 164 1.308069 ACGCATGCATGGAAGGTCAC 61.308 55.000 27.34 7.64 0.00 3.67
164 165 1.430632 GCATGCATGGAAGGTCACG 59.569 57.895 27.34 0.00 0.00 4.35
165 166 1.996786 GCATGCATGGAAGGTCACGG 61.997 60.000 27.34 0.00 0.00 4.94
166 167 1.077501 ATGCATGGAAGGTCACGGG 60.078 57.895 0.00 0.00 0.00 5.28
167 168 1.561769 ATGCATGGAAGGTCACGGGA 61.562 55.000 0.00 0.00 0.00 5.14
168 169 1.450312 GCATGGAAGGTCACGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
169 170 1.221840 CATGGAAGGTCACGGGAGG 59.778 63.158 0.00 0.00 0.00 4.30
170 171 1.080354 ATGGAAGGTCACGGGAGGA 59.920 57.895 0.00 0.00 0.00 3.71
171 172 0.546747 ATGGAAGGTCACGGGAGGAA 60.547 55.000 0.00 0.00 0.00 3.36
172 173 1.192146 TGGAAGGTCACGGGAGGAAG 61.192 60.000 0.00 0.00 0.00 3.46
173 174 0.903454 GGAAGGTCACGGGAGGAAGA 60.903 60.000 0.00 0.00 0.00 2.87
174 175 1.196012 GAAGGTCACGGGAGGAAGAT 58.804 55.000 0.00 0.00 0.00 2.40
175 176 2.385803 GAAGGTCACGGGAGGAAGATA 58.614 52.381 0.00 0.00 0.00 1.98
176 177 2.544844 AGGTCACGGGAGGAAGATAA 57.455 50.000 0.00 0.00 0.00 1.75
177 178 2.389715 AGGTCACGGGAGGAAGATAAG 58.610 52.381 0.00 0.00 0.00 1.73
178 179 2.024273 AGGTCACGGGAGGAAGATAAGA 60.024 50.000 0.00 0.00 0.00 2.10
179 180 2.764572 GGTCACGGGAGGAAGATAAGAA 59.235 50.000 0.00 0.00 0.00 2.52
180 181 3.181474 GGTCACGGGAGGAAGATAAGAAG 60.181 52.174 0.00 0.00 0.00 2.85
181 182 3.031736 TCACGGGAGGAAGATAAGAAGG 58.968 50.000 0.00 0.00 0.00 3.46
182 183 3.031736 CACGGGAGGAAGATAAGAAGGA 58.968 50.000 0.00 0.00 0.00 3.36
183 184 3.643792 CACGGGAGGAAGATAAGAAGGAT 59.356 47.826 0.00 0.00 0.00 3.24
184 185 3.898741 ACGGGAGGAAGATAAGAAGGATC 59.101 47.826 0.00 0.00 0.00 3.36
185 186 3.898123 CGGGAGGAAGATAAGAAGGATCA 59.102 47.826 0.00 0.00 0.00 2.92
186 187 4.021544 CGGGAGGAAGATAAGAAGGATCAG 60.022 50.000 0.00 0.00 0.00 2.90
187 188 5.151454 GGGAGGAAGATAAGAAGGATCAGA 58.849 45.833 0.00 0.00 0.00 3.27
188 189 5.784906 GGGAGGAAGATAAGAAGGATCAGAT 59.215 44.000 0.00 0.00 0.00 2.90
189 190 6.070824 GGGAGGAAGATAAGAAGGATCAGATC 60.071 46.154 1.18 1.18 0.00 2.75
190 191 6.350110 GGAGGAAGATAAGAAGGATCAGATCG 60.350 46.154 4.23 0.00 0.00 3.69
191 192 6.074648 AGGAAGATAAGAAGGATCAGATCGT 58.925 40.000 4.23 1.82 0.00 3.73
192 193 6.553100 AGGAAGATAAGAAGGATCAGATCGTT 59.447 38.462 16.59 16.59 39.80 3.85
197 198 3.651803 GAAGGATCAGATCGTTCGGAT 57.348 47.619 23.56 8.59 42.14 4.18
198 199 4.768130 GAAGGATCAGATCGTTCGGATA 57.232 45.455 23.56 0.00 42.14 2.59
199 200 5.317733 GAAGGATCAGATCGTTCGGATAT 57.682 43.478 23.56 1.36 42.14 1.63
200 201 4.974368 AGGATCAGATCGTTCGGATATC 57.026 45.455 8.79 0.00 36.98 1.63
201 202 4.594970 AGGATCAGATCGTTCGGATATCT 58.405 43.478 8.79 7.36 36.98 1.98
202 203 4.638421 AGGATCAGATCGTTCGGATATCTC 59.362 45.833 8.79 0.00 36.98 2.75
203 204 4.201970 GGATCAGATCGTTCGGATATCTCC 60.202 50.000 8.79 4.24 36.98 3.71
204 205 3.082548 TCAGATCGTTCGGATATCTCCC 58.917 50.000 2.05 0.00 38.45 4.30
205 206 3.085533 CAGATCGTTCGGATATCTCCCT 58.914 50.000 2.05 0.00 38.45 4.20
206 207 3.508012 CAGATCGTTCGGATATCTCCCTT 59.492 47.826 2.05 0.00 38.45 3.95
207 208 4.700692 CAGATCGTTCGGATATCTCCCTTA 59.299 45.833 2.05 0.00 38.45 2.69
208 209 5.183331 CAGATCGTTCGGATATCTCCCTTAA 59.817 44.000 2.05 0.00 38.45 1.85
209 210 5.773680 AGATCGTTCGGATATCTCCCTTAAA 59.226 40.000 2.05 0.00 38.45 1.52
210 211 6.437793 AGATCGTTCGGATATCTCCCTTAAAT 59.562 38.462 2.05 0.00 38.45 1.40
211 212 6.415206 TCGTTCGGATATCTCCCTTAAATT 57.585 37.500 2.05 0.00 38.45 1.82
212 213 6.453092 TCGTTCGGATATCTCCCTTAAATTC 58.547 40.000 2.05 0.00 38.45 2.17
213 214 5.638234 CGTTCGGATATCTCCCTTAAATTCC 59.362 44.000 2.05 0.00 38.45 3.01
214 215 5.401531 TCGGATATCTCCCTTAAATTCCG 57.598 43.478 2.05 0.00 44.64 4.30
215 216 4.836736 TCGGATATCTCCCTTAAATTCCGT 59.163 41.667 2.05 0.00 43.91 4.69
216 217 6.012113 TCGGATATCTCCCTTAAATTCCGTA 58.988 40.000 2.05 0.00 43.91 4.02
217 218 6.071728 TCGGATATCTCCCTTAAATTCCGTAC 60.072 42.308 2.05 0.00 43.91 3.67
218 219 6.098017 GGATATCTCCCTTAAATTCCGTACG 58.902 44.000 8.69 8.69 35.28 3.67
219 220 6.294955 GGATATCTCCCTTAAATTCCGTACGT 60.295 42.308 15.21 0.00 35.28 3.57
220 221 4.806640 TCTCCCTTAAATTCCGTACGTT 57.193 40.909 15.21 4.25 0.00 3.99
221 222 5.913137 TCTCCCTTAAATTCCGTACGTTA 57.087 39.130 15.21 3.20 0.00 3.18
222 223 5.894807 TCTCCCTTAAATTCCGTACGTTAG 58.105 41.667 15.21 0.00 0.00 2.34
223 224 5.009854 TCCCTTAAATTCCGTACGTTAGG 57.990 43.478 15.21 7.63 0.00 2.69
224 225 4.709397 TCCCTTAAATTCCGTACGTTAGGA 59.291 41.667 15.21 7.49 34.19 2.94
225 226 4.805719 CCCTTAAATTCCGTACGTTAGGAC 59.194 45.833 15.21 0.00 36.06 3.85
226 227 5.410067 CCTTAAATTCCGTACGTTAGGACA 58.590 41.667 15.21 4.42 36.06 4.02
227 228 6.044682 CCTTAAATTCCGTACGTTAGGACAT 58.955 40.000 15.21 6.17 36.06 3.06
228 229 6.536224 CCTTAAATTCCGTACGTTAGGACATT 59.464 38.462 15.21 10.80 36.06 2.71
229 230 7.706179 CCTTAAATTCCGTACGTTAGGACATTA 59.294 37.037 15.21 10.01 36.06 1.90
230 231 8.633075 TTAAATTCCGTACGTTAGGACATTAG 57.367 34.615 15.21 0.00 36.06 1.73
231 232 5.841957 ATTCCGTACGTTAGGACATTAGT 57.158 39.130 15.21 0.00 36.06 2.24
232 233 4.882671 TCCGTACGTTAGGACATTAGTC 57.117 45.455 15.21 0.00 44.21 2.59
233 234 3.309682 TCCGTACGTTAGGACATTAGTCG 59.690 47.826 15.21 0.00 45.92 4.18
234 235 3.063997 CCGTACGTTAGGACATTAGTCGT 59.936 47.826 15.21 0.00 45.92 4.34
235 236 4.024438 CGTACGTTAGGACATTAGTCGTG 58.976 47.826 7.22 0.00 45.92 4.35
236 237 4.436050 CGTACGTTAGGACATTAGTCGTGT 60.436 45.833 7.22 0.00 45.92 4.49
237 238 4.088823 ACGTTAGGACATTAGTCGTGTC 57.911 45.455 0.00 0.00 45.92 3.67
244 245 4.923264 GACATTAGTCGTGTCCTTTTCC 57.077 45.455 0.00 0.00 39.99 3.13
245 246 4.312443 GACATTAGTCGTGTCCTTTTCCA 58.688 43.478 0.00 0.00 39.99 3.53
359 360 5.820926 GCACAAATGCGTTGAAAATCTTA 57.179 34.783 6.92 0.00 43.33 2.10
400 401 9.774742 CTATGTTTAGGACTTATGCAAGAAAAC 57.225 33.333 0.00 0.00 35.60 2.43
427 428 3.739401 AAAGTCCGAAAATGGGAGGAT 57.261 42.857 0.00 0.00 35.00 3.24
444 445 4.384940 GAGGATAAAGAGGATGCCTTGTC 58.615 47.826 0.00 0.00 31.76 3.18
450 451 3.515602 AGAGGATGCCTTGTCTTGTTT 57.484 42.857 0.00 0.00 31.76 2.83
460 461 4.799255 GCCTTGTCTTGTTTATGTTTGGGG 60.799 45.833 0.00 0.00 0.00 4.96
475 476 1.703411 TGGGGTTTTTGAGAAGGCAG 58.297 50.000 0.00 0.00 0.00 4.85
481 482 3.430790 GGTTTTTGAGAAGGCAGCACTTT 60.431 43.478 0.00 0.00 0.00 2.66
485 486 2.154462 TGAGAAGGCAGCACTTTTAGC 58.846 47.619 0.00 0.00 0.00 3.09
489 490 0.674895 AGGCAGCACTTTTAGCGGAG 60.675 55.000 0.00 0.00 37.01 4.63
497 498 3.610911 CACTTTTAGCGGAGGAGGAAAT 58.389 45.455 0.00 0.00 0.00 2.17
504 505 2.019156 GCGGAGGAGGAAATTTGGAGG 61.019 57.143 0.00 0.00 0.00 4.30
505 506 1.559682 CGGAGGAGGAAATTTGGAGGA 59.440 52.381 0.00 0.00 0.00 3.71
508 509 3.956848 GGAGGAGGAAATTTGGAGGAATG 59.043 47.826 0.00 0.00 0.00 2.67
548 549 7.268199 AGTTATGCAAGAACATATGTGGATG 57.732 36.000 9.63 9.55 32.71 3.51
554 555 5.643664 CAAGAACATATGTGGATGTGGTTG 58.356 41.667 9.63 1.55 39.99 3.77
606 607 3.364366 GCACATGCCGTAGATCTTATTGC 60.364 47.826 0.00 0.00 34.31 3.56
625 626 9.950680 CTTATTGCGTTTATAAATGTTCTGGAT 57.049 29.630 16.79 6.82 0.00 3.41
632 633 7.169308 CGTTTATAAATGTTCTGGATCGTAGCT 59.831 37.037 8.96 0.00 0.00 3.32
656 657 2.105128 GCGCATCGTCCAGCTAGT 59.895 61.111 0.30 0.00 0.00 2.57
678 679 9.675464 CTAGTATTAATACACCCCTCACAAAAA 57.325 33.333 24.05 0.00 35.74 1.94
712 714 3.502920 ACACGTTCATTTGCGTCAAAAA 58.497 36.364 8.65 0.00 39.48 1.94
762 776 1.347707 TGGGAATATGGATCGGAGCAC 59.652 52.381 0.00 0.00 0.00 4.40
779 793 2.281970 CAGCAGTGGCAGGCAAGA 60.282 61.111 12.91 0.00 44.61 3.02
783 797 1.530013 GCAGTGGCAGGCAAGACATT 61.530 55.000 0.00 0.00 40.72 2.71
822 836 2.607187 ACGAATCTTAGACAGCAACCG 58.393 47.619 0.00 0.00 0.00 4.44
824 838 2.345641 CGAATCTTAGACAGCAACCGTG 59.654 50.000 0.00 0.00 0.00 4.94
845 859 1.747355 CCTTGCTAGTGGAAATGGCTG 59.253 52.381 0.00 0.00 39.87 4.85
848 862 1.630369 TGCTAGTGGAAATGGCTGTCT 59.370 47.619 0.00 0.00 39.87 3.41
856 870 0.539051 AAATGGCTGTCTCCTCTCGG 59.461 55.000 0.00 0.00 0.00 4.63
870 884 0.772384 TCTCGGGCCCTTTAAAACCA 59.228 50.000 22.43 0.00 0.00 3.67
874 888 1.712056 GGGCCCTTTAAAACCACAGT 58.288 50.000 17.04 0.00 0.00 3.55
881 895 4.261867 CCCTTTAAAACCACAGTACCTTGC 60.262 45.833 0.00 0.00 0.00 4.01
910 924 2.778679 GCACGAACTGCATCGGAC 59.221 61.111 13.80 2.15 46.82 4.79
921 937 1.281899 GCATCGGACAGTAGTTGCTC 58.718 55.000 4.95 0.00 0.00 4.26
933 949 1.154150 GTTGCTCGCAATGGCTCAC 60.154 57.895 7.67 0.00 38.28 3.51
963 979 3.474570 ATGGCCCTGCTCCTCGTC 61.475 66.667 0.00 0.00 0.00 4.20
1003 1019 3.413522 GCATTTGCCTGCTGAGAAC 57.586 52.632 0.00 0.00 39.12 3.01
1004 1020 0.455633 GCATTTGCCTGCTGAGAACG 60.456 55.000 0.00 0.00 39.12 3.95
1005 1021 0.455633 CATTTGCCTGCTGAGAACGC 60.456 55.000 0.00 0.00 0.00 4.84
1006 1022 1.915614 ATTTGCCTGCTGAGAACGCG 61.916 55.000 3.53 3.53 0.00 6.01
1036 1052 3.395669 GGCAAGTACGCCGTGATC 58.604 61.111 0.00 0.00 43.52 2.92
1037 1053 1.153628 GGCAAGTACGCCGTGATCT 60.154 57.895 0.00 0.00 43.52 2.75
1038 1054 0.739813 GGCAAGTACGCCGTGATCTT 60.740 55.000 0.00 0.00 43.52 2.40
1039 1055 0.645868 GCAAGTACGCCGTGATCTTC 59.354 55.000 0.00 0.00 0.00 2.87
1064 1080 1.228657 GGGTGCACGTCTTCAGGTTC 61.229 60.000 11.45 0.00 0.00 3.62
1088 1104 1.835494 AGAAGATGGACCTCGTCGAA 58.165 50.000 0.00 0.00 36.53 3.71
1122 1138 1.817209 GAGGTCTTCGCCAGGGTAG 59.183 63.158 0.00 0.00 0.00 3.18
1124 1140 1.684734 GGTCTTCGCCAGGGTAGGA 60.685 63.158 0.00 0.00 0.00 2.94
1125 1141 1.516423 GTCTTCGCCAGGGTAGGAC 59.484 63.158 0.00 0.00 0.00 3.85
1126 1142 1.077805 TCTTCGCCAGGGTAGGACA 59.922 57.895 0.00 0.00 0.00 4.02
1127 1143 1.218316 CTTCGCCAGGGTAGGACAC 59.782 63.158 0.00 0.00 0.00 3.67
1148 1164 0.450583 GATGATAGCCATGCATGCCG 59.549 55.000 21.69 9.83 35.17 5.69
1155 1171 1.500396 CCATGCATGCCGATCATCG 59.500 57.895 21.69 0.00 40.07 3.84
1156 1172 0.952010 CCATGCATGCCGATCATCGA 60.952 55.000 21.69 0.00 43.74 3.59
1157 1173 1.084289 CATGCATGCCGATCATCGAT 58.916 50.000 14.93 0.00 43.74 3.59
1158 1174 1.062148 CATGCATGCCGATCATCGATC 59.938 52.381 14.93 0.11 43.74 3.69
1159 1175 0.671472 TGCATGCCGATCATCGATCC 60.671 55.000 16.68 0.00 43.74 3.36
1160 1176 0.671472 GCATGCCGATCATCGATCCA 60.671 55.000 9.16 2.99 43.74 3.41
1161 1177 2.010544 GCATGCCGATCATCGATCCAT 61.011 52.381 9.16 5.36 43.74 3.41
1162 1178 2.353323 CATGCCGATCATCGATCCATT 58.647 47.619 9.16 0.00 43.74 3.16
1164 1180 3.236632 TGCCGATCATCGATCCATTAG 57.763 47.619 9.16 0.00 43.74 1.73
1184 2966 7.815641 CATTAGTGGATTGTGTTATGACAACA 58.184 34.615 0.00 0.00 38.64 3.33
1185 2967 7.994425 TTAGTGGATTGTGTTATGACAACAT 57.006 32.000 0.00 0.00 38.64 2.71
1186 2968 6.258230 AGTGGATTGTGTTATGACAACATG 57.742 37.500 0.00 0.00 38.64 3.21
1193 2983 9.277565 GATTGTGTTATGACAACATGTTGATAC 57.722 33.333 38.30 27.50 42.93 2.24
1199 2989 5.611796 TGACAACATGTTGATACTGCTTC 57.388 39.130 38.30 24.36 42.93 3.86
1200 2990 4.455533 TGACAACATGTTGATACTGCTTCC 59.544 41.667 38.30 16.43 42.93 3.46
1235 3025 2.435586 CAACCTGGGCTGAGCTCG 60.436 66.667 9.64 5.21 0.00 5.03
1310 3100 4.699522 AAGAGCGTTGTCCCGGGC 62.700 66.667 18.49 12.24 0.00 6.13
1364 3159 5.070047 AGGGGTACGTATAGAACAGAAATGG 59.930 44.000 0.00 0.00 0.00 3.16
1376 3171 7.830099 AGAACAGAAATGGAATTCAGTTTCT 57.170 32.000 21.91 21.91 38.60 2.52
1397 3192 7.722795 TTCTGAATAAGAAACACATGACGAA 57.277 32.000 0.00 0.00 42.09 3.85
1400 3195 8.229811 TCTGAATAAGAAACACATGACGAAATG 58.770 33.333 0.00 0.00 29.54 2.32
1401 3196 6.801377 TGAATAAGAAACACATGACGAAATGC 59.199 34.615 0.00 0.00 0.00 3.56
1402 3197 3.559238 AGAAACACATGACGAAATGCC 57.441 42.857 0.00 0.00 0.00 4.40
1403 3198 2.884012 AGAAACACATGACGAAATGCCA 59.116 40.909 0.00 0.00 0.00 4.92
1404 3199 2.704725 AACACATGACGAAATGCCAC 57.295 45.000 0.00 0.00 0.00 5.01
1405 3200 0.516877 ACACATGACGAAATGCCACG 59.483 50.000 0.00 0.00 0.00 4.94
1406 3201 0.179192 CACATGACGAAATGCCACGG 60.179 55.000 0.00 0.00 0.00 4.94
1407 3202 0.321210 ACATGACGAAATGCCACGGA 60.321 50.000 0.00 0.00 0.00 4.69
1408 3203 0.096976 CATGACGAAATGCCACGGAC 59.903 55.000 0.00 0.00 0.00 4.79
1409 3204 0.321210 ATGACGAAATGCCACGGACA 60.321 50.000 0.00 0.00 0.00 4.02
1410 3205 0.321210 TGACGAAATGCCACGGACAT 60.321 50.000 0.00 0.00 0.00 3.06
1414 3209 1.202065 CGAAATGCCACGGACATTGAG 60.202 52.381 6.53 2.25 37.78 3.02
1415 3210 0.527565 AAATGCCACGGACATTGAGC 59.472 50.000 6.53 0.00 37.78 4.26
1416 3211 1.315257 AATGCCACGGACATTGAGCC 61.315 55.000 5.34 0.00 36.41 4.70
1417 3212 3.134127 GCCACGGACATTGAGCCC 61.134 66.667 0.00 0.00 0.00 5.19
1418 3213 2.350895 CCACGGACATTGAGCCCA 59.649 61.111 0.00 0.00 0.00 5.36
1419 3214 1.746615 CCACGGACATTGAGCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
1420 3215 2.045926 ACGGACATTGAGCCCAGC 60.046 61.111 0.00 0.00 0.00 4.85
1421 3216 2.046023 CGGACATTGAGCCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
1422 3217 1.675310 CGGACATTGAGCCCAGCAA 60.675 57.895 0.00 0.00 0.00 3.91
1428 3285 2.699846 ACATTGAGCCCAGCAAAGAAAA 59.300 40.909 0.00 0.00 0.00 2.29
1456 3313 8.428186 TCATTACCGACTTGTTGATATAAACC 57.572 34.615 0.20 0.00 0.00 3.27
1459 3316 6.980051 ACCGACTTGTTGATATAAACCTTC 57.020 37.500 0.20 0.00 0.00 3.46
1462 3319 7.280205 ACCGACTTGTTGATATAAACCTTCATC 59.720 37.037 0.20 0.00 0.00 2.92
1463 3320 7.254795 CCGACTTGTTGATATAAACCTTCATCC 60.255 40.741 0.20 0.00 0.00 3.51
1466 3323 9.308000 ACTTGTTGATATAAACCTTCATCCAAA 57.692 29.630 0.20 0.00 0.00 3.28
1510 3369 3.112709 GAGTGGCGCGGTGTCTTC 61.113 66.667 8.83 0.00 0.00 2.87
1520 3379 2.097629 CGCGGTGTCTTCATTCTAGAGA 59.902 50.000 0.00 0.00 0.00 3.10
1524 3383 5.006165 GCGGTGTCTTCATTCTAGAGAAATG 59.994 44.000 0.00 0.00 37.61 2.32
1525 3384 5.521735 CGGTGTCTTCATTCTAGAGAAATGG 59.478 44.000 3.61 0.00 37.61 3.16
1526 3385 5.295540 GGTGTCTTCATTCTAGAGAAATGGC 59.704 44.000 3.61 0.00 37.61 4.40
1532 3391 6.992063 TCATTCTAGAGAAATGGCAACTTC 57.008 37.500 0.00 0.00 37.61 3.01
1543 3402 9.374838 GAGAAATGGCAACTTCAATTATCAAAT 57.625 29.630 13.29 0.00 37.61 2.32
1620 7160 8.429641 TCAAAGTATATATGTTCCCTTCTGGAC 58.570 37.037 0.00 0.00 45.11 4.02
1628 7168 8.697507 ATATGTTCCCTTCTGGACATAAAATC 57.302 34.615 0.00 0.00 45.11 2.17
1687 7229 2.937799 GCAAGCAGAGGAGATTCTTCAG 59.062 50.000 0.00 0.00 0.00 3.02
1709 7251 8.205131 TCAGGCGGTAATTACTTTTTATCTTC 57.795 34.615 15.05 0.00 0.00 2.87
1754 7296 2.839486 TCACGGAAGAAAGATGCACT 57.161 45.000 0.00 0.00 0.00 4.40
1769 7311 1.954528 CACTGCTGAACAAGGGCTG 59.045 57.895 0.00 0.00 0.00 4.85
1903 7455 4.891260 GTACCATACCAGCCACTAATACC 58.109 47.826 0.00 0.00 0.00 2.73
1921 7619 9.664332 ACTAATACCATAGATGAGCAATGAATC 57.336 33.333 0.00 0.00 0.00 2.52
1933 7635 5.764686 TGAGCAATGAATCCATATACACACC 59.235 40.000 0.00 0.00 31.59 4.16
1945 7650 7.020009 TCCATATACACACCCCATCTTATGTA 58.980 38.462 0.00 0.00 0.00 2.29
1947 7652 7.770433 CCATATACACACCCCATCTTATGTATG 59.230 40.741 5.22 0.00 35.47 2.39
1955 7660 5.536161 ACCCCATCTTATGTATGCATCAAAC 59.464 40.000 0.19 0.00 36.58 2.93
1961 7666 6.054941 TCTTATGTATGCATCAAACGATGGT 58.945 36.000 0.19 0.00 40.63 3.55
1962 7667 7.213678 TCTTATGTATGCATCAAACGATGGTA 58.786 34.615 0.19 0.00 40.63 3.25
1963 7668 5.673337 ATGTATGCATCAAACGATGGTAC 57.327 39.130 0.19 0.00 40.63 3.34
1991 7807 2.167281 TGCTCTGAACTATCTGCTGGAC 59.833 50.000 0.00 0.00 0.00 4.02
2162 8003 5.510179 CCTCAAGGGAAAAGACTACAACGTA 60.510 44.000 0.00 0.00 37.23 3.57
2178 8019 5.657474 ACAACGTATATGTCCACAGGTTAG 58.343 41.667 0.00 0.00 0.00 2.34
2199 8534 2.287644 GTGTTCTGGTTTTGCATTTGGC 59.712 45.455 0.00 0.00 45.13 4.52
2212 8547 4.908966 GCATTTGGCAAATCACTTGTAC 57.091 40.909 22.02 2.09 43.97 2.90
2213 8548 4.559153 GCATTTGGCAAATCACTTGTACT 58.441 39.130 22.02 0.00 43.97 2.73
2214 8549 5.708948 GCATTTGGCAAATCACTTGTACTA 58.291 37.500 22.02 0.00 43.97 1.82
2215 8550 5.801947 GCATTTGGCAAATCACTTGTACTAG 59.198 40.000 22.02 8.09 43.97 2.57
2216 8551 5.371115 TTTGGCAAATCACTTGTACTAGC 57.629 39.130 8.93 0.00 37.36 3.42
2217 8552 4.014569 TGGCAAATCACTTGTACTAGCA 57.985 40.909 4.10 0.00 37.36 3.49
2218 8553 3.751175 TGGCAAATCACTTGTACTAGCAC 59.249 43.478 4.10 0.00 37.36 4.40
2219 8554 3.181520 GGCAAATCACTTGTACTAGCACG 60.182 47.826 4.10 0.00 37.36 5.34
2220 8555 3.678072 GCAAATCACTTGTACTAGCACGA 59.322 43.478 4.10 0.00 37.36 4.35
2227 8562 6.655062 TCACTTGTACTAGCACGAAAAATTG 58.345 36.000 4.10 0.00 0.00 2.32
2238 8573 6.145535 AGCACGAAAAATTGAAGAGAACATC 58.854 36.000 0.00 0.00 0.00 3.06
2244 8579 9.403110 CGAAAAATTGAAGAGAACATCTGAATT 57.597 29.630 0.00 0.00 38.67 2.17
2247 8582 9.702494 AAAATTGAAGAGAACATCTGAATTTCC 57.298 29.630 0.00 0.00 38.62 3.13
2248 8583 6.824305 TTGAAGAGAACATCTGAATTTCCC 57.176 37.500 0.00 0.00 38.67 3.97
2249 8584 6.131972 TGAAGAGAACATCTGAATTTCCCT 57.868 37.500 0.00 0.00 38.67 4.20
2251 8586 7.689299 TGAAGAGAACATCTGAATTTCCCTAA 58.311 34.615 0.00 0.00 38.67 2.69
2252 8587 8.163408 TGAAGAGAACATCTGAATTTCCCTAAA 58.837 33.333 0.00 0.00 38.67 1.85
2253 8588 8.940397 AAGAGAACATCTGAATTTCCCTAAAA 57.060 30.769 0.00 0.00 38.67 1.52
2254 8589 8.940397 AGAGAACATCTGAATTTCCCTAAAAA 57.060 30.769 0.00 0.00 36.69 1.94
2290 8625 4.796038 ATGCAGTTACTTGTACTACGGT 57.204 40.909 0.00 0.00 0.00 4.83
2386 8728 6.028368 CAGTGGTACGTATCTGTAACAGAAG 58.972 44.000 7.47 0.00 42.38 2.85
2405 8747 1.600638 CAGAGGAGCACAGCCATGA 59.399 57.895 0.00 0.00 0.00 3.07
2481 8823 0.537188 ACACCTACAATGGCGAGGAG 59.463 55.000 5.32 0.74 34.24 3.69
2565 8907 4.749310 CTGAAGCTGGACGCGCCT 62.749 66.667 18.14 0.00 45.59 5.52
2857 9199 1.216941 GCTCGTCGACGGTTTTGGAA 61.217 55.000 35.05 14.31 40.29 3.53
2859 9201 1.796459 CTCGTCGACGGTTTTGGAATT 59.204 47.619 35.05 0.00 40.29 2.17
2867 9209 0.732538 GGTTTTGGAATTGCGCCGAG 60.733 55.000 4.18 0.00 0.00 4.63
2994 9339 3.639538 TGCGCGATTTCTACTCTAATCC 58.360 45.455 12.10 0.00 0.00 3.01
3001 9346 2.289592 TCTACTCTAATCCTCCGGCC 57.710 55.000 0.00 0.00 0.00 6.13
3028 9373 2.418197 CCGGTAGGATCGATTGTGTTGT 60.418 50.000 0.00 0.00 41.02 3.32
3029 9374 2.858344 CGGTAGGATCGATTGTGTTGTC 59.142 50.000 0.00 0.00 0.00 3.18
3031 9376 3.865745 GGTAGGATCGATTGTGTTGTCTG 59.134 47.826 0.00 0.00 0.00 3.51
3032 9377 3.685139 AGGATCGATTGTGTTGTCTGT 57.315 42.857 0.00 0.00 0.00 3.41
3045 13685 0.445829 TGTCTGTTGTGTTGTGTGCG 59.554 50.000 0.00 0.00 0.00 5.34
3075 13715 2.990514 CCATTGATGTAACACGACGTGA 59.009 45.455 33.12 12.27 36.96 4.35
3083 13723 4.609947 TGTAACACGACGTGAACTGTATT 58.390 39.130 33.12 17.30 36.96 1.89
3119 13760 6.366061 TGGATCGATTAGCAACAATAATCTCG 59.634 38.462 0.00 0.00 37.45 4.04
3126 13767 4.384056 AGCAACAATAATCTCGGATGAGG 58.616 43.478 0.00 0.00 42.79 3.86
3138 13779 5.450453 TCTCGGATGAGGAAGTAAAGAGAT 58.550 41.667 0.00 0.00 42.79 2.75
3139 13780 6.602278 TCTCGGATGAGGAAGTAAAGAGATA 58.398 40.000 0.00 0.00 42.79 1.98
3178 13819 8.104222 GGCAAATTTGACGAGTATAAAACATC 57.896 34.615 22.31 0.00 0.00 3.06
3180 13821 9.289303 GCAAATTTGACGAGTATAAAACATCAT 57.711 29.630 22.31 0.00 0.00 2.45
3207 13848 9.668497 AGTTTTTGAAGAGAGTACTAACTTTGT 57.332 29.630 13.01 0.00 35.56 2.83
3226 13867 6.319405 ACTTTGTAAAATTAAGTGTCCACCGT 59.681 34.615 0.00 0.00 31.31 4.83
3230 13871 4.618920 AAATTAAGTGTCCACCGTCTCT 57.381 40.909 0.00 0.00 0.00 3.10
3272 13914 6.705863 ATGAATTCTCAGCAAAATACTCCC 57.294 37.500 7.05 0.00 34.23 4.30
3274 13916 5.882557 TGAATTCTCAGCAAAATACTCCCTC 59.117 40.000 7.05 0.00 0.00 4.30
3276 13918 4.744795 TCTCAGCAAAATACTCCCTCTC 57.255 45.455 0.00 0.00 0.00 3.20
3282 13924 3.600388 CAAAATACTCCCTCTCTTGCGT 58.400 45.455 0.00 0.00 0.00 5.24
3288 13930 4.749310 CCTCTCTTGCGTGCGGCT 62.749 66.667 0.00 0.00 44.05 5.52
3289 13931 3.485431 CTCTCTTGCGTGCGGCTG 61.485 66.667 0.00 0.00 44.05 4.85
3290 13932 4.299547 TCTCTTGCGTGCGGCTGT 62.300 61.111 0.00 0.00 44.05 4.40
3291 13933 3.349006 CTCTTGCGTGCGGCTGTT 61.349 61.111 0.00 0.00 44.05 3.16
3332 13975 1.627550 GCTCGCAAAGAACCCGACTC 61.628 60.000 0.00 0.00 0.00 3.36
3401 14044 3.009301 ACTTACAACGGTCAGAACGAG 57.991 47.619 16.66 9.21 34.93 4.18
3432 14076 1.000955 ACACTGGAAAGCCTACTCACG 59.999 52.381 0.00 0.00 34.31 4.35
3492 14165 1.595993 GCCGAGCACTCCACACTAGA 61.596 60.000 0.00 0.00 0.00 2.43
3754 14429 1.416243 TTTGGGATATACCTCGCCGT 58.584 50.000 5.33 0.00 38.98 5.68
3863 14539 2.866523 ATAACCTCCCGACCGAGCCA 62.867 60.000 0.00 0.00 0.00 4.75
3899 14575 1.367471 CTCCAGCAAGGTCACGACA 59.633 57.895 0.00 0.00 39.02 4.35
4011 14691 0.251742 CCCCATGGAGGAAAGCAACA 60.252 55.000 15.22 0.00 41.22 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.953559 TGTAGCTCAAATCATCCGCC 58.046 50.000 0.00 0.00 0.00 6.13
1 2 4.098416 GTTTTGTAGCTCAAATCATCCGC 58.902 43.478 10.72 0.00 44.15 5.54
2 3 5.295431 TGTTTTGTAGCTCAAATCATCCG 57.705 39.130 13.64 0.00 44.15 4.18
3 4 8.437742 CAAAATGTTTTGTAGCTCAAATCATCC 58.562 33.333 21.89 8.87 46.65 3.51
4 5 9.195411 TCAAAATGTTTTGTAGCTCAAATCATC 57.805 29.630 21.89 11.71 46.65 2.92
10 11 9.985318 CAAAATTCAAAATGTTTTGTAGCTCAA 57.015 25.926 15.51 4.75 45.77 3.02
11 12 9.376075 TCAAAATTCAAAATGTTTTGTAGCTCA 57.624 25.926 15.51 0.00 45.77 4.26
12 13 9.853921 CTCAAAATTCAAAATGTTTTGTAGCTC 57.146 29.630 15.51 0.00 45.77 4.09
13 14 9.382275 ACTCAAAATTCAAAATGTTTTGTAGCT 57.618 25.926 15.51 0.00 45.77 3.32
14 15 9.636965 GACTCAAAATTCAAAATGTTTTGTAGC 57.363 29.630 15.51 0.00 45.77 3.58
30 31 9.038803 GCAGATTCTTTTTCAAGACTCAAAATT 57.961 29.630 5.45 0.00 39.90 1.82
31 32 8.419442 AGCAGATTCTTTTTCAAGACTCAAAAT 58.581 29.630 5.45 0.00 39.90 1.82
32 33 7.703621 CAGCAGATTCTTTTTCAAGACTCAAAA 59.296 33.333 5.45 0.00 39.90 2.44
33 34 7.067372 TCAGCAGATTCTTTTTCAAGACTCAAA 59.933 33.333 5.45 0.00 39.90 2.69
34 35 6.543465 TCAGCAGATTCTTTTTCAAGACTCAA 59.457 34.615 5.45 0.00 39.90 3.02
35 36 6.017605 GTCAGCAGATTCTTTTTCAAGACTCA 60.018 38.462 5.45 0.00 39.90 3.41
36 37 6.017605 TGTCAGCAGATTCTTTTTCAAGACTC 60.018 38.462 0.00 0.00 38.86 3.36
37 38 5.824624 TGTCAGCAGATTCTTTTTCAAGACT 59.175 36.000 0.00 0.00 38.86 3.24
38 39 6.064846 TGTCAGCAGATTCTTTTTCAAGAC 57.935 37.500 0.00 0.00 38.86 3.01
39 40 6.487668 TGATGTCAGCAGATTCTTTTTCAAGA 59.512 34.615 0.00 0.00 37.24 3.02
40 41 6.675026 TGATGTCAGCAGATTCTTTTTCAAG 58.325 36.000 0.00 0.00 0.00 3.02
41 42 6.638096 TGATGTCAGCAGATTCTTTTTCAA 57.362 33.333 0.00 0.00 0.00 2.69
42 43 6.431852 TGATGATGTCAGCAGATTCTTTTTCA 59.568 34.615 0.00 0.00 37.34 2.69
43 44 6.849502 TGATGATGTCAGCAGATTCTTTTTC 58.150 36.000 0.00 0.00 37.34 2.29
44 45 6.829229 TGATGATGTCAGCAGATTCTTTTT 57.171 33.333 0.00 0.00 37.34 1.94
75 76 7.385267 ACCTAATTACATGCATGCAAGAAAAA 58.615 30.769 28.20 18.11 0.00 1.94
76 77 6.934056 ACCTAATTACATGCATGCAAGAAAA 58.066 32.000 28.20 20.31 0.00 2.29
77 78 6.528537 ACCTAATTACATGCATGCAAGAAA 57.471 33.333 28.20 19.58 0.00 2.52
78 79 6.377996 AGAACCTAATTACATGCATGCAAGAA 59.622 34.615 28.20 19.80 0.00 2.52
79 80 5.887598 AGAACCTAATTACATGCATGCAAGA 59.112 36.000 28.20 12.32 0.00 3.02
80 81 6.140303 AGAACCTAATTACATGCATGCAAG 57.860 37.500 26.68 23.45 0.00 4.01
81 82 7.637631 TTAGAACCTAATTACATGCATGCAA 57.362 32.000 26.68 20.49 0.00 4.08
82 83 7.822161 ATTAGAACCTAATTACATGCATGCA 57.178 32.000 26.53 25.04 0.00 3.96
121 122 8.855279 GCGTGCATCTTTTTATATGTGTTTTAA 58.145 29.630 0.00 0.00 0.00 1.52
122 123 8.023706 TGCGTGCATCTTTTTATATGTGTTTTA 58.976 29.630 0.00 0.00 0.00 1.52
123 124 6.865726 TGCGTGCATCTTTTTATATGTGTTTT 59.134 30.769 0.00 0.00 0.00 2.43
124 125 6.385843 TGCGTGCATCTTTTTATATGTGTTT 58.614 32.000 0.00 0.00 0.00 2.83
125 126 5.948588 TGCGTGCATCTTTTTATATGTGTT 58.051 33.333 0.00 0.00 0.00 3.32
126 127 5.559427 TGCGTGCATCTTTTTATATGTGT 57.441 34.783 0.00 0.00 0.00 3.72
127 128 6.428673 CATGCGTGCATCTTTTTATATGTG 57.571 37.500 3.96 0.00 33.90 3.21
143 144 1.307355 TGACCTTCCATGCATGCGTG 61.307 55.000 29.36 29.36 0.00 5.34
144 145 1.002257 TGACCTTCCATGCATGCGT 60.002 52.632 21.69 10.53 0.00 5.24
145 146 1.430632 GTGACCTTCCATGCATGCG 59.569 57.895 21.69 14.24 0.00 4.73
146 147 1.430632 CGTGACCTTCCATGCATGC 59.569 57.895 21.69 11.82 0.00 4.06
147 148 1.378882 CCCGTGACCTTCCATGCATG 61.379 60.000 20.19 20.19 0.00 4.06
148 149 1.077501 CCCGTGACCTTCCATGCAT 60.078 57.895 0.00 0.00 0.00 3.96
149 150 2.184020 CTCCCGTGACCTTCCATGCA 62.184 60.000 0.00 0.00 0.00 3.96
150 151 1.450312 CTCCCGTGACCTTCCATGC 60.450 63.158 0.00 0.00 0.00 4.06
151 152 1.221840 CCTCCCGTGACCTTCCATG 59.778 63.158 0.00 0.00 0.00 3.66
152 153 0.546747 TTCCTCCCGTGACCTTCCAT 60.547 55.000 0.00 0.00 0.00 3.41
153 154 1.152204 TTCCTCCCGTGACCTTCCA 60.152 57.895 0.00 0.00 0.00 3.53
154 155 0.903454 TCTTCCTCCCGTGACCTTCC 60.903 60.000 0.00 0.00 0.00 3.46
155 156 1.196012 ATCTTCCTCCCGTGACCTTC 58.804 55.000 0.00 0.00 0.00 3.46
156 157 2.544844 TATCTTCCTCCCGTGACCTT 57.455 50.000 0.00 0.00 0.00 3.50
157 158 2.024273 TCTTATCTTCCTCCCGTGACCT 60.024 50.000 0.00 0.00 0.00 3.85
158 159 2.385803 TCTTATCTTCCTCCCGTGACC 58.614 52.381 0.00 0.00 0.00 4.02
159 160 3.181474 CCTTCTTATCTTCCTCCCGTGAC 60.181 52.174 0.00 0.00 0.00 3.67
160 161 3.031736 CCTTCTTATCTTCCTCCCGTGA 58.968 50.000 0.00 0.00 0.00 4.35
161 162 3.031736 TCCTTCTTATCTTCCTCCCGTG 58.968 50.000 0.00 0.00 0.00 4.94
162 163 3.399952 TCCTTCTTATCTTCCTCCCGT 57.600 47.619 0.00 0.00 0.00 5.28
163 164 3.898123 TGATCCTTCTTATCTTCCTCCCG 59.102 47.826 0.00 0.00 0.00 5.14
164 165 5.151454 TCTGATCCTTCTTATCTTCCTCCC 58.849 45.833 0.00 0.00 0.00 4.30
165 166 6.350110 CGATCTGATCCTTCTTATCTTCCTCC 60.350 46.154 11.84 0.00 0.00 4.30
166 167 6.208599 ACGATCTGATCCTTCTTATCTTCCTC 59.791 42.308 11.84 0.00 0.00 3.71
167 168 6.074648 ACGATCTGATCCTTCTTATCTTCCT 58.925 40.000 11.84 0.00 0.00 3.36
168 169 6.339587 ACGATCTGATCCTTCTTATCTTCC 57.660 41.667 11.84 0.00 0.00 3.46
169 170 6.580791 CGAACGATCTGATCCTTCTTATCTTC 59.419 42.308 19.87 6.05 0.00 2.87
170 171 6.442952 CGAACGATCTGATCCTTCTTATCTT 58.557 40.000 19.87 0.00 0.00 2.40
171 172 5.048364 CCGAACGATCTGATCCTTCTTATCT 60.048 44.000 19.87 0.00 0.00 1.98
172 173 5.048643 TCCGAACGATCTGATCCTTCTTATC 60.049 44.000 19.87 6.76 0.00 1.75
173 174 4.827835 TCCGAACGATCTGATCCTTCTTAT 59.172 41.667 19.87 0.28 0.00 1.73
174 175 4.204799 TCCGAACGATCTGATCCTTCTTA 58.795 43.478 19.87 10.10 0.00 2.10
175 176 3.024547 TCCGAACGATCTGATCCTTCTT 58.975 45.455 19.87 6.19 0.00 2.52
176 177 2.656002 TCCGAACGATCTGATCCTTCT 58.344 47.619 19.87 2.74 0.00 2.85
177 178 3.651803 ATCCGAACGATCTGATCCTTC 57.348 47.619 11.84 13.83 0.00 3.46
178 179 5.013547 AGATATCCGAACGATCTGATCCTT 58.986 41.667 11.84 6.82 32.54 3.36
179 180 4.594970 AGATATCCGAACGATCTGATCCT 58.405 43.478 11.84 0.00 32.54 3.24
180 181 4.201970 GGAGATATCCGAACGATCTGATCC 60.202 50.000 11.84 0.00 32.54 3.36
181 182 4.201970 GGGAGATATCCGAACGATCTGATC 60.202 50.000 7.60 7.60 32.54 2.92
182 183 3.697045 GGGAGATATCCGAACGATCTGAT 59.303 47.826 0.00 5.06 34.40 2.90
183 184 3.082548 GGGAGATATCCGAACGATCTGA 58.917 50.000 0.00 0.00 30.01 3.27
184 185 3.085533 AGGGAGATATCCGAACGATCTG 58.914 50.000 0.00 0.00 30.01 2.90
185 186 3.443145 AGGGAGATATCCGAACGATCT 57.557 47.619 0.00 0.00 32.57 2.75
186 187 5.640189 TTAAGGGAGATATCCGAACGATC 57.360 43.478 0.00 0.00 31.92 3.69
187 188 6.607004 ATTTAAGGGAGATATCCGAACGAT 57.393 37.500 0.00 0.00 34.73 3.73
188 189 6.415206 AATTTAAGGGAGATATCCGAACGA 57.585 37.500 0.00 0.00 0.00 3.85
189 190 5.638234 GGAATTTAAGGGAGATATCCGAACG 59.362 44.000 0.00 0.00 0.00 3.95
194 195 6.098017 CGTACGGAATTTAAGGGAGATATCC 58.902 44.000 7.57 0.00 0.00 2.59
195 196 6.685657 ACGTACGGAATTTAAGGGAGATATC 58.314 40.000 21.06 0.00 0.00 1.63
196 197 6.661304 ACGTACGGAATTTAAGGGAGATAT 57.339 37.500 21.06 0.00 0.00 1.63
197 198 6.469782 AACGTACGGAATTTAAGGGAGATA 57.530 37.500 21.06 0.00 0.00 1.98
198 199 5.349061 AACGTACGGAATTTAAGGGAGAT 57.651 39.130 21.06 0.00 0.00 2.75
199 200 4.806640 AACGTACGGAATTTAAGGGAGA 57.193 40.909 21.06 0.00 0.00 3.71
200 201 5.045872 CCTAACGTACGGAATTTAAGGGAG 58.954 45.833 21.06 0.00 0.00 4.30
201 202 4.709397 TCCTAACGTACGGAATTTAAGGGA 59.291 41.667 21.06 9.64 0.00 4.20
202 203 4.805719 GTCCTAACGTACGGAATTTAAGGG 59.194 45.833 21.06 7.59 0.00 3.95
203 204 5.410067 TGTCCTAACGTACGGAATTTAAGG 58.590 41.667 21.06 13.80 0.00 2.69
204 205 7.529880 AATGTCCTAACGTACGGAATTTAAG 57.470 36.000 21.06 3.14 0.00 1.85
205 206 8.250332 ACTAATGTCCTAACGTACGGAATTTAA 58.750 33.333 21.06 0.37 0.00 1.52
206 207 7.771183 ACTAATGTCCTAACGTACGGAATTTA 58.229 34.615 21.06 7.98 0.00 1.40
207 208 6.633856 ACTAATGTCCTAACGTACGGAATTT 58.366 36.000 21.06 7.15 0.00 1.82
208 209 6.212888 ACTAATGTCCTAACGTACGGAATT 57.787 37.500 21.06 7.54 0.00 2.17
209 210 5.504665 CGACTAATGTCCTAACGTACGGAAT 60.505 44.000 21.06 7.94 39.94 3.01
210 211 4.201812 CGACTAATGTCCTAACGTACGGAA 60.202 45.833 21.06 5.91 39.94 4.30
211 212 3.309682 CGACTAATGTCCTAACGTACGGA 59.690 47.826 21.06 6.07 39.94 4.69
212 213 3.063997 ACGACTAATGTCCTAACGTACGG 59.936 47.826 21.06 1.09 39.94 4.02
213 214 4.024438 CACGACTAATGTCCTAACGTACG 58.976 47.826 15.01 15.01 39.94 3.67
214 215 4.974591 ACACGACTAATGTCCTAACGTAC 58.025 43.478 0.00 0.00 39.94 3.67
215 216 5.221891 GACACGACTAATGTCCTAACGTA 57.778 43.478 0.00 0.00 40.56 3.57
216 217 4.088823 GACACGACTAATGTCCTAACGT 57.911 45.455 0.00 0.00 40.56 3.99
223 224 4.312443 TGGAAAAGGACACGACTAATGTC 58.688 43.478 0.00 0.00 44.80 3.06
224 225 4.345859 TGGAAAAGGACACGACTAATGT 57.654 40.909 0.00 0.00 0.00 2.71
225 226 5.682943 TTTGGAAAAGGACACGACTAATG 57.317 39.130 0.00 0.00 0.00 1.90
226 227 6.488683 TGAATTTGGAAAAGGACACGACTAAT 59.511 34.615 0.00 0.00 0.00 1.73
227 228 5.823570 TGAATTTGGAAAAGGACACGACTAA 59.176 36.000 0.00 0.00 0.00 2.24
228 229 5.369833 TGAATTTGGAAAAGGACACGACTA 58.630 37.500 0.00 0.00 0.00 2.59
229 230 4.204012 TGAATTTGGAAAAGGACACGACT 58.796 39.130 0.00 0.00 0.00 4.18
230 231 4.561735 TGAATTTGGAAAAGGACACGAC 57.438 40.909 0.00 0.00 0.00 4.34
231 232 5.782893 AATGAATTTGGAAAAGGACACGA 57.217 34.783 0.00 0.00 0.00 4.35
232 233 5.982516 TCAAATGAATTTGGAAAAGGACACG 59.017 36.000 14.19 0.00 45.39 4.49
233 234 7.442062 ACATCAAATGAATTTGGAAAAGGACAC 59.558 33.333 14.19 0.00 45.39 3.67
234 235 7.507829 ACATCAAATGAATTTGGAAAAGGACA 58.492 30.769 14.19 0.00 45.39 4.02
235 236 7.967890 ACATCAAATGAATTTGGAAAAGGAC 57.032 32.000 14.19 0.00 45.39 3.85
305 306 9.953697 ATTTCGTGTACTTGCAGTTTAAATTTA 57.046 25.926 0.00 0.00 0.00 1.40
310 311 7.917597 TGTTATTTCGTGTACTTGCAGTTTAA 58.082 30.769 0.00 0.00 0.00 1.52
315 316 4.669197 GCCTGTTATTTCGTGTACTTGCAG 60.669 45.833 0.00 0.00 0.00 4.41
335 336 2.593346 TTTTCAACGCATTTGTGCCT 57.407 40.000 0.00 0.00 36.49 4.75
369 370 9.330063 CTTGCATAAGTCCTAAACATAGATCAA 57.670 33.333 0.00 0.00 0.00 2.57
409 410 4.473559 TCTTTATCCTCCCATTTTCGGACT 59.526 41.667 0.00 0.00 0.00 3.85
410 411 4.777463 TCTTTATCCTCCCATTTTCGGAC 58.223 43.478 0.00 0.00 0.00 4.79
414 415 5.242615 GCATCCTCTTTATCCTCCCATTTTC 59.757 44.000 0.00 0.00 0.00 2.29
427 428 4.640771 ACAAGACAAGGCATCCTCTTTA 57.359 40.909 0.00 0.00 30.89 1.85
444 445 7.044798 TCTCAAAAACCCCAAACATAAACAAG 58.955 34.615 0.00 0.00 0.00 3.16
450 451 4.039852 GCCTTCTCAAAAACCCCAAACATA 59.960 41.667 0.00 0.00 0.00 2.29
460 461 3.443099 AAGTGCTGCCTTCTCAAAAAC 57.557 42.857 0.00 0.00 0.00 2.43
475 476 0.249398 TCCTCCTCCGCTAAAAGTGC 59.751 55.000 0.00 0.00 0.00 4.40
481 482 2.574369 TCCAAATTTCCTCCTCCGCTAA 59.426 45.455 0.00 0.00 0.00 3.09
485 486 1.559682 TCCTCCAAATTTCCTCCTCCG 59.440 52.381 0.00 0.00 0.00 4.63
489 490 3.118992 GCACATTCCTCCAAATTTCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
497 498 0.893270 CCACCGCACATTCCTCCAAA 60.893 55.000 0.00 0.00 0.00 3.28
504 505 2.500509 TTTGAAACCACCGCACATTC 57.499 45.000 0.00 0.00 0.00 2.67
505 506 2.167487 ACTTTTGAAACCACCGCACATT 59.833 40.909 0.00 0.00 0.00 2.71
508 509 2.287393 AACTTTTGAAACCACCGCAC 57.713 45.000 0.00 0.00 0.00 5.34
548 549 4.055360 GTTTAAGATTGCAACCCAACCAC 58.945 43.478 0.00 0.00 35.99 4.16
554 555 3.578688 CTGCAGTTTAAGATTGCAACCC 58.421 45.455 5.25 0.00 46.08 4.11
591 592 9.741168 CATTTATAAACGCAATAAGATCTACGG 57.259 33.333 0.00 0.00 0.00 4.02
606 607 7.169308 AGCTACGATCCAGAACATTTATAAACG 59.831 37.037 0.00 0.00 0.00 3.60
640 641 2.423926 AATACTAGCTGGACGATGCG 57.576 50.000 3.17 0.00 0.00 4.73
648 649 5.542635 TGAGGGGTGTATTAATACTAGCTGG 59.457 44.000 22.82 0.00 34.41 4.85
651 652 6.415206 TGTGAGGGGTGTATTAATACTAGC 57.585 41.667 22.82 17.82 34.41 3.42
678 679 7.589954 GCAAATGAACGTGTACAATACTTTCTT 59.410 33.333 0.00 0.00 0.00 2.52
689 690 2.934107 TGACGCAAATGAACGTGTAC 57.066 45.000 0.00 0.00 43.71 2.90
712 714 0.534873 GGCTCTCCGCTCTTCTTCTT 59.465 55.000 0.00 0.00 39.13 2.52
714 716 4.825377 GGCTCTCCGCTCTTCTTC 57.175 61.111 0.00 0.00 39.13 2.87
737 751 1.070134 CCGATCCATATTCCCACGTGT 59.930 52.381 15.65 0.00 0.00 4.49
762 776 2.281970 TCTTGCCTGCCACTGCTG 60.282 61.111 0.00 0.00 38.71 4.41
779 793 1.616159 CCGTGTTGAAAGGGGAATGT 58.384 50.000 0.00 0.00 0.00 2.71
804 818 2.094417 GCACGGTTGCTGTCTAAGATTC 59.906 50.000 0.00 0.00 46.17 2.52
822 836 1.474077 CCATTTCCACTAGCAAGGCAC 59.526 52.381 0.00 0.00 0.00 5.01
824 838 0.457443 GCCATTTCCACTAGCAAGGC 59.543 55.000 0.00 0.00 0.00 4.35
856 870 2.559668 GGTACTGTGGTTTTAAAGGGCC 59.440 50.000 0.00 0.00 0.00 5.80
881 895 3.535629 TTCGTGCTCCAGCCACCAG 62.536 63.158 0.00 0.00 41.18 4.00
909 923 1.442769 CCATTGCGAGCAACTACTGT 58.557 50.000 13.05 0.00 38.88 3.55
910 924 0.097674 GCCATTGCGAGCAACTACTG 59.902 55.000 13.05 7.34 38.88 2.74
917 933 2.032376 TGTGAGCCATTGCGAGCA 59.968 55.556 0.00 0.00 44.33 4.26
921 937 1.138036 CATGGTGTGAGCCATTGCG 59.862 57.895 0.00 0.00 46.33 4.85
949 965 4.154347 CAGGACGAGGAGCAGGGC 62.154 72.222 0.00 0.00 0.00 5.19
956 972 1.141254 CTAGGACTAGCAGGACGAGGA 59.859 57.143 0.00 0.00 0.00 3.71
986 1002 0.455633 GCGTTCTCAGCAGGCAAATG 60.456 55.000 0.00 0.00 34.19 2.32
987 1003 1.878775 GCGTTCTCAGCAGGCAAAT 59.121 52.632 0.00 0.00 34.19 2.32
988 1004 2.606961 CGCGTTCTCAGCAGGCAAA 61.607 57.895 0.00 0.00 34.19 3.68
1020 1036 0.645868 GAAGATCACGGCGTACTTGC 59.354 55.000 23.23 14.38 0.00 4.01
1021 1037 0.914551 CGAAGATCACGGCGTACTTG 59.085 55.000 23.23 9.47 0.00 3.16
1022 1038 0.806868 TCGAAGATCACGGCGTACTT 59.193 50.000 14.22 18.10 0.00 2.24
1023 1039 0.098376 GTCGAAGATCACGGCGTACT 59.902 55.000 14.22 10.04 40.67 2.73
1024 1040 2.563614 GTCGAAGATCACGGCGTAC 58.436 57.895 14.22 7.62 40.67 3.67
1028 1044 3.607987 CGCGTCGAAGATCACGGC 61.608 66.667 1.37 9.09 40.67 5.68
1029 1045 2.949678 CCGCGTCGAAGATCACGG 60.950 66.667 4.92 1.40 41.19 4.94
1030 1046 2.949678 CCCGCGTCGAAGATCACG 60.950 66.667 4.92 0.28 40.67 4.35
1031 1047 2.158959 CACCCGCGTCGAAGATCAC 61.159 63.158 4.92 0.00 40.67 3.06
1032 1048 2.180769 CACCCGCGTCGAAGATCA 59.819 61.111 4.92 0.00 40.67 2.92
1033 1049 3.255379 GCACCCGCGTCGAAGATC 61.255 66.667 4.92 0.00 40.67 2.75
1034 1050 4.063967 TGCACCCGCGTCGAAGAT 62.064 61.111 4.92 0.00 42.97 2.40
1064 1080 1.202582 ACGAGGTCCATCTTCTTGTCG 59.797 52.381 0.00 0.00 0.00 4.35
1122 1138 1.800805 CATGGCTATCATCGGTGTCC 58.199 55.000 0.00 0.00 32.92 4.02
1124 1140 0.469494 TGCATGGCTATCATCGGTGT 59.531 50.000 0.00 0.00 32.92 4.16
1125 1141 1.467342 CATGCATGGCTATCATCGGTG 59.533 52.381 19.40 0.00 32.92 4.94
1126 1142 1.817357 CATGCATGGCTATCATCGGT 58.183 50.000 19.40 0.00 32.92 4.69
1127 1143 0.450583 GCATGCATGGCTATCATCGG 59.549 55.000 27.34 0.00 32.92 4.18
1158 1174 7.094420 TGTTGTCATAACACAATCCACTAATGG 60.094 37.037 0.00 0.00 40.55 3.16
1159 1175 7.815641 TGTTGTCATAACACAATCCACTAATG 58.184 34.615 0.00 0.00 38.53 1.90
1160 1176 7.994425 TGTTGTCATAACACAATCCACTAAT 57.006 32.000 0.00 0.00 38.53 1.73
1161 1177 7.446931 ACATGTTGTCATAACACAATCCACTAA 59.553 33.333 0.00 0.00 38.53 2.24
1162 1178 6.939730 ACATGTTGTCATAACACAATCCACTA 59.060 34.615 0.00 0.00 38.53 2.74
1164 1180 6.012658 ACATGTTGTCATAACACAATCCAC 57.987 37.500 0.00 0.00 38.53 4.02
1177 2959 4.455533 GGAAGCAGTATCAACATGTTGTCA 59.544 41.667 31.99 20.56 41.16 3.58
1180 2962 3.436704 ACGGAAGCAGTATCAACATGTTG 59.563 43.478 29.01 29.01 41.71 3.33
1181 2963 3.674997 ACGGAAGCAGTATCAACATGTT 58.325 40.909 4.92 4.92 0.00 2.71
1182 2964 3.334583 ACGGAAGCAGTATCAACATGT 57.665 42.857 0.00 0.00 0.00 3.21
1183 2965 3.242091 CGAACGGAAGCAGTATCAACATG 60.242 47.826 0.00 0.00 0.00 3.21
1184 2966 2.930040 CGAACGGAAGCAGTATCAACAT 59.070 45.455 0.00 0.00 0.00 2.71
1185 2967 2.288579 ACGAACGGAAGCAGTATCAACA 60.289 45.455 0.00 0.00 0.00 3.33
1186 2968 2.334838 ACGAACGGAAGCAGTATCAAC 58.665 47.619 0.00 0.00 0.00 3.18
1193 2983 1.569493 CACCAACGAACGGAAGCAG 59.431 57.895 0.00 0.00 0.00 4.24
1199 2989 2.590575 ACCTGCACCAACGAACGG 60.591 61.111 0.00 0.00 0.00 4.44
1200 2990 2.631428 CACCTGCACCAACGAACG 59.369 61.111 0.00 0.00 0.00 3.95
1223 3013 4.129737 GCGTACGAGCTCAGCCCA 62.130 66.667 21.65 0.00 0.00 5.36
1310 3100 2.603560 GGGAGTCGTTTTCATAAGCGAG 59.396 50.000 0.00 0.00 45.53 5.03
1376 3171 6.801377 GCATTTCGTCATGTGTTTCTTATTCA 59.199 34.615 0.00 0.00 0.00 2.57
1394 3189 0.801872 TCAATGTCCGTGGCATTTCG 59.198 50.000 0.00 0.00 34.68 3.46
1395 3190 1.468054 GCTCAATGTCCGTGGCATTTC 60.468 52.381 0.00 0.00 34.68 2.17
1397 3192 1.315257 GGCTCAATGTCCGTGGCATT 61.315 55.000 0.00 0.00 37.06 3.56
1400 3195 3.134127 GGGCTCAATGTCCGTGGC 61.134 66.667 0.00 0.00 0.00 5.01
1401 3196 1.746615 CTGGGCTCAATGTCCGTGG 60.747 63.158 0.00 0.00 45.26 4.94
1402 3197 2.401766 GCTGGGCTCAATGTCCGTG 61.402 63.158 0.00 0.00 45.26 4.94
1403 3198 2.045926 GCTGGGCTCAATGTCCGT 60.046 61.111 0.00 0.00 45.26 4.69
1404 3199 1.243342 TTTGCTGGGCTCAATGTCCG 61.243 55.000 0.00 0.00 45.26 4.79
1405 3200 0.529378 CTTTGCTGGGCTCAATGTCC 59.471 55.000 0.00 0.00 41.87 4.02
1406 3201 1.538047 TCTTTGCTGGGCTCAATGTC 58.462 50.000 0.00 0.00 0.00 3.06
1407 3202 1.999648 TTCTTTGCTGGGCTCAATGT 58.000 45.000 0.00 0.00 0.00 2.71
1408 3203 3.389925 TTTTCTTTGCTGGGCTCAATG 57.610 42.857 0.00 0.00 0.00 2.82
1432 3289 8.433421 AGGTTTATATCAACAAGTCGGTAATG 57.567 34.615 2.38 0.00 0.00 1.90
1434 3291 8.095792 TGAAGGTTTATATCAACAAGTCGGTAA 58.904 33.333 2.38 0.00 0.00 2.85
1438 3295 7.279981 TGGATGAAGGTTTATATCAACAAGTCG 59.720 37.037 2.38 0.00 0.00 4.18
1474 3331 0.038744 CTGCATCCTCACTTGGGGTT 59.961 55.000 0.00 0.00 0.00 4.11
1476 3333 0.107312 CTCTGCATCCTCACTTGGGG 60.107 60.000 0.00 0.00 0.00 4.96
1477 3334 0.617413 ACTCTGCATCCTCACTTGGG 59.383 55.000 0.00 0.00 0.00 4.12
1478 3335 1.678123 CCACTCTGCATCCTCACTTGG 60.678 57.143 0.00 0.00 0.00 3.61
1510 3369 6.748333 TGAAGTTGCCATTTCTCTAGAATG 57.252 37.500 0.00 0.00 33.54 2.67
1520 3379 9.504708 TTCATTTGATAATTGAAGTTGCCATTT 57.495 25.926 0.00 0.00 0.00 2.32
1620 7160 1.003545 CCGTCGCCTGCAGATTTTATG 60.004 52.381 17.39 0.00 0.00 1.90
1687 7229 7.148205 TGTGGAAGATAAAAAGTAATTACCGCC 60.148 37.037 12.05 3.69 0.00 6.13
1709 7251 4.149922 CGTACAACTGACAGTAACATGTGG 59.850 45.833 17.19 8.14 32.25 4.17
1739 7281 2.430465 TCAGCAGTGCATCTTTCTTCC 58.570 47.619 19.20 0.00 0.00 3.46
1754 7296 0.106268 TTTCCAGCCCTTGTTCAGCA 60.106 50.000 0.00 0.00 0.00 4.41
1769 7311 3.507233 TCACCTGCAACAAGATCATTTCC 59.493 43.478 0.00 0.00 0.00 3.13
1808 7353 4.323104 GGATTGTACTGAAACCTGCTCTCT 60.323 45.833 0.00 0.00 0.00 3.10
1892 7444 5.152623 TGCTCATCTATGGTATTAGTGGC 57.847 43.478 0.00 0.00 0.00 5.01
1901 7453 5.314718 TGGATTCATTGCTCATCTATGGT 57.685 39.130 0.00 0.00 0.00 3.55
1903 7455 9.609346 TGTATATGGATTCATTGCTCATCTATG 57.391 33.333 0.00 0.00 34.96 2.23
1921 7619 6.126863 ACATAAGATGGGGTGTGTATATGG 57.873 41.667 0.00 0.00 33.60 2.74
1933 7635 5.469760 TCGTTTGATGCATACATAAGATGGG 59.530 40.000 0.00 0.00 36.35 4.00
1955 7660 1.404391 AGAGCAACCTACGTACCATCG 59.596 52.381 0.00 0.00 0.00 3.84
1961 7666 5.066117 CAGATAGTTCAGAGCAACCTACGTA 59.934 44.000 0.00 0.00 0.00 3.57
1962 7667 4.017808 AGATAGTTCAGAGCAACCTACGT 58.982 43.478 0.00 0.00 0.00 3.57
1963 7668 4.355437 CAGATAGTTCAGAGCAACCTACG 58.645 47.826 0.00 0.00 0.00 3.51
1991 7807 4.826274 TGAGTAGTCTCCTCCCAATTTG 57.174 45.455 0.00 0.00 39.75 2.32
2162 8003 5.338381 CCAGAACACTAACCTGTGGACATAT 60.338 44.000 0.00 0.00 41.84 1.78
2178 8019 2.287644 GCCAAATGCAAAACCAGAACAC 59.712 45.455 0.00 0.00 40.77 3.32
2199 8534 5.839262 TTCGTGCTAGTACAAGTGATTTG 57.161 39.130 11.70 0.00 42.68 2.32
2204 8539 6.655062 TCAATTTTTCGTGCTAGTACAAGTG 58.345 36.000 11.70 7.22 0.00 3.16
2207 8542 7.439955 TCTCTTCAATTTTTCGTGCTAGTACAA 59.560 33.333 11.70 2.26 0.00 2.41
2208 8543 6.926826 TCTCTTCAATTTTTCGTGCTAGTACA 59.073 34.615 11.70 0.00 0.00 2.90
2209 8544 7.347508 TCTCTTCAATTTTTCGTGCTAGTAC 57.652 36.000 0.08 0.08 0.00 2.73
2210 8545 7.439955 TGTTCTCTTCAATTTTTCGTGCTAGTA 59.560 33.333 0.00 0.00 0.00 1.82
2211 8546 6.260050 TGTTCTCTTCAATTTTTCGTGCTAGT 59.740 34.615 0.00 0.00 0.00 2.57
2212 8547 6.658831 TGTTCTCTTCAATTTTTCGTGCTAG 58.341 36.000 0.00 0.00 0.00 3.42
2213 8548 6.612247 TGTTCTCTTCAATTTTTCGTGCTA 57.388 33.333 0.00 0.00 0.00 3.49
2214 8549 5.499139 TGTTCTCTTCAATTTTTCGTGCT 57.501 34.783 0.00 0.00 0.00 4.40
2215 8550 6.087291 CAGATGTTCTCTTCAATTTTTCGTGC 59.913 38.462 0.00 0.00 29.16 5.34
2216 8551 7.355017 TCAGATGTTCTCTTCAATTTTTCGTG 58.645 34.615 0.00 0.00 29.16 4.35
2217 8552 7.496529 TCAGATGTTCTCTTCAATTTTTCGT 57.503 32.000 0.00 0.00 29.16 3.85
2218 8553 8.961294 ATTCAGATGTTCTCTTCAATTTTTCG 57.039 30.769 0.00 0.00 29.16 3.46
2227 8562 8.567285 TTTAGGGAAATTCAGATGTTCTCTTC 57.433 34.615 2.13 0.00 34.03 2.87
2263 8598 7.490079 CCGTAGTACAAGTAACTGCATTCATTA 59.510 37.037 0.38 0.00 30.81 1.90
2290 8625 1.666553 CACACGAGCGGCTAAACCA 60.667 57.895 0.60 0.00 39.03 3.67
2386 8728 2.113433 CATGGCTGTGCTCCTCTGC 61.113 63.158 0.00 0.00 0.00 4.26
2405 8747 5.366477 ACAGGAAATCCAACTGAAAATGGTT 59.634 36.000 1.67 0.00 37.94 3.67
2481 8823 2.102553 GAGGCTGAGGCGTCGTAC 59.897 66.667 0.00 0.00 42.20 3.67
2565 8907 3.659092 CAGTTCTTGGCCGCGCAA 61.659 61.111 8.75 0.00 0.00 4.85
2632 8974 1.063764 GAAGAAGGACGCGACGTAGAT 59.936 52.381 15.93 0.00 41.37 1.98
2730 9072 4.680237 CACACCTTCTCGGCGGCA 62.680 66.667 10.53 0.00 35.61 5.69
2867 9209 1.078848 ACCAGCGTGATCTCCTTGC 60.079 57.895 0.00 0.00 0.00 4.01
3001 9346 4.323843 CGATCCTACCGGCCGACG 62.324 72.222 30.73 14.21 43.80 5.12
3028 9373 1.372838 CCCGCACACAACACAACAGA 61.373 55.000 0.00 0.00 0.00 3.41
3029 9374 1.063972 CCCGCACACAACACAACAG 59.936 57.895 0.00 0.00 0.00 3.16
3031 9376 0.733729 TAACCCGCACACAACACAAC 59.266 50.000 0.00 0.00 0.00 3.32
3032 9377 1.460504 TTAACCCGCACACAACACAA 58.539 45.000 0.00 0.00 0.00 3.33
3075 13715 3.134623 TCCATCCATCGAGCAATACAGTT 59.865 43.478 0.00 0.00 0.00 3.16
3119 13760 7.936301 AGCAAATATCTCTTTACTTCCTCATCC 59.064 37.037 0.00 0.00 0.00 3.51
3138 13779 1.160989 TTGCCGCGAAAGAGCAAATA 58.839 45.000 15.70 0.00 45.02 1.40
3139 13780 1.956043 TTGCCGCGAAAGAGCAAAT 59.044 47.368 15.70 0.00 45.02 2.32
3202 13843 6.731164 ACGGTGGACACTTAATTTTACAAAG 58.269 36.000 2.13 0.00 0.00 2.77
3207 13848 6.105397 AGAGACGGTGGACACTTAATTTTA 57.895 37.500 2.13 0.00 0.00 1.52
3218 13859 3.186613 GTCAAATTTGAGAGACGGTGGAC 59.813 47.826 21.05 2.08 37.98 4.02
3272 13914 3.485431 CAGCCGCACGCAAGAGAG 61.485 66.667 0.00 0.00 41.38 3.20
3274 13916 2.770587 GAAACAGCCGCACGCAAGAG 62.771 60.000 0.00 0.00 41.38 2.85
3276 13918 2.392613 AAGAAACAGCCGCACGCAAG 62.393 55.000 0.00 0.00 41.38 4.01
3282 13924 3.518634 AAAAGAAAAGAAACAGCCGCA 57.481 38.095 0.00 0.00 0.00 5.69
3288 13930 7.486870 GCCTTCGTTCTAAAAAGAAAAGAAACA 59.513 33.333 7.96 0.00 33.41 2.83
3289 13931 7.701078 AGCCTTCGTTCTAAAAAGAAAAGAAAC 59.299 33.333 7.96 5.06 33.41 2.78
3290 13932 7.768240 AGCCTTCGTTCTAAAAAGAAAAGAAA 58.232 30.769 7.96 0.00 33.41 2.52
3291 13933 7.329588 AGCCTTCGTTCTAAAAAGAAAAGAA 57.670 32.000 2.57 4.92 33.41 2.52
3324 13967 3.751698 GCTTTGTTAATTCAGAGTCGGGT 59.248 43.478 0.00 0.00 0.00 5.28
3332 13975 4.858692 CGGTTGATGGCTTTGTTAATTCAG 59.141 41.667 0.00 0.00 0.00 3.02
3401 14044 3.440522 GCTTTCCAGTGTTCCCTATTGTC 59.559 47.826 0.00 0.00 0.00 3.18
3432 14076 2.617274 GCGGCTTGTGGAGGTTGTC 61.617 63.158 0.00 0.00 0.00 3.18
3492 14165 4.752101 GCTCCGTTTCTGCTACATATGATT 59.248 41.667 10.38 0.00 0.00 2.57
3658 14333 4.533815 TCTAGGGTGAGCTTCTCGAAATA 58.466 43.478 0.00 0.00 32.35 1.40
3863 14539 1.302511 GGCGTCATCAAGGGTGTGT 60.303 57.895 0.00 0.00 0.00 3.72
3937 14614 2.203422 CTGCCCGGGTGAAAACCA 60.203 61.111 24.63 8.57 0.00 3.67
4040 14720 3.540367 GAAACCTTGGCCGGTCCGA 62.540 63.158 14.39 3.92 35.89 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.