Multiple sequence alignment - TraesCS3A01G044200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G044200 chr3A 100.000 3030 0 0 1 3030 23868710 23865681 0.000000e+00 5596
1 TraesCS3A01G044200 chr3A 86.614 127 17 0 2077 2203 332556293 332556167 1.130000e-29 141
2 TraesCS3A01G044200 chr3D 95.142 2326 84 13 349 2649 13253846 13256167 0.000000e+00 3642
3 TraesCS3A01G044200 chr3D 93.220 354 17 4 1 353 13251119 13251466 5.790000e-142 514
4 TraesCS3A01G044200 chr3D 96.212 264 10 0 2767 3030 13256541 13256804 1.670000e-117 433
5 TraesCS3A01G044200 chr3D 85.827 127 18 0 2077 2203 251316011 251316137 5.270000e-28 135
6 TraesCS3A01G044200 chr3B 91.890 1307 63 12 804 2079 19165937 19167231 0.000000e+00 1786
7 TraesCS3A01G044200 chr3B 86.585 492 47 14 2 489 19164771 19165247 2.680000e-145 525
8 TraesCS3A01G044200 chr3B 84.071 565 54 23 2474 3030 19167563 19168099 2.080000e-141 512
9 TraesCS3A01G044200 chr3B 91.830 306 13 3 2206 2501 19167229 19167532 1.680000e-112 416
10 TraesCS3A01G044200 chr7D 84.553 123 19 0 2077 2199 584458448 584458326 4.100000e-24 122
11 TraesCS3A01G044200 chr6B 84.127 126 20 0 2078 2203 479843597 479843472 4.100000e-24 122
12 TraesCS3A01G044200 chr4D 83.212 137 18 5 2077 2211 366693480 366693347 1.480000e-23 121
13 TraesCS3A01G044200 chr4B 85.593 118 13 3 2066 2182 659336486 659336600 1.480000e-23 121
14 TraesCS3A01G044200 chr4B 83.740 123 20 0 2077 2199 489398981 489399103 1.910000e-22 117
15 TraesCS3A01G044200 chr2D 83.077 130 21 1 2078 2207 16660449 16660577 1.910000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G044200 chr3A 23865681 23868710 3029 True 5596.000000 5596 100.000 1 3030 1 chr3A.!!$R1 3029
1 TraesCS3A01G044200 chr3D 13251119 13256804 5685 False 1529.666667 3642 94.858 1 3030 3 chr3D.!!$F2 3029
2 TraesCS3A01G044200 chr3B 19164771 19168099 3328 False 809.750000 1786 88.594 2 3030 4 chr3B.!!$F1 3028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 3078 1.805428 AATGTGGTGGCTTTGGTCGC 61.805 55.0 0.0 0.0 0.00 5.19 F
1729 4560 0.453793 CGAGACTGAGACTTCGGCAT 59.546 55.0 0.0 0.0 32.63 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 4698 0.598419 CTCAGCACGCTCACACAGAA 60.598 55.0 0.0 0.0 0.0 3.02 R
2726 5657 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 210 5.033589 ACTGACCATGAAAAATGCCAAAA 57.966 34.783 0.00 0.00 0.00 2.44
248 251 3.864243 ACCGTGTGTTGAGTGTAGAAAA 58.136 40.909 0.00 0.00 0.00 2.29
297 300 3.293311 GCATATCATGACACCAATGCC 57.707 47.619 0.00 0.00 34.95 4.40
299 302 3.305131 GCATATCATGACACCAATGCCAG 60.305 47.826 0.00 0.00 34.95 4.85
443 2830 5.841957 AGAGAAGAAGCAAAAGCAAAGAA 57.158 34.783 0.00 0.00 0.00 2.52
523 2924 6.726258 AGAACAAAACCAAGCAAAGAAAAG 57.274 33.333 0.00 0.00 0.00 2.27
591 2992 1.878953 AGTGTTAGGCTGTTTGTCGG 58.121 50.000 0.00 0.00 0.00 4.79
627 3028 5.900339 TGGTGCTTATATTTCGTCGAATC 57.100 39.130 8.78 0.00 0.00 2.52
634 3035 9.129209 TGCTTATATTTCGTCGAATCTAATCTG 57.871 33.333 8.78 0.00 0.00 2.90
672 3074 4.892433 TCAATTAAATGTGGTGGCTTTGG 58.108 39.130 0.00 0.00 0.00 3.28
676 3078 1.805428 AATGTGGTGGCTTTGGTCGC 61.805 55.000 0.00 0.00 0.00 5.19
752 3160 5.982516 GCTTTCATAGATGTGAGTGTAGGAG 59.017 44.000 0.00 0.00 0.00 3.69
762 3170 3.376234 GTGAGTGTAGGAGCGTGTATGTA 59.624 47.826 0.00 0.00 0.00 2.29
767 3175 3.439825 TGTAGGAGCGTGTATGTAACGAA 59.560 43.478 0.00 0.00 43.68 3.85
773 3181 2.416431 GCGTGTATGTAACGAAGGTCCT 60.416 50.000 0.00 0.00 43.68 3.85
804 3632 7.872881 TGTACCGTGTATCTAAAAATGCAAAA 58.127 30.769 0.00 0.00 0.00 2.44
805 3633 8.350722 TGTACCGTGTATCTAAAAATGCAAAAA 58.649 29.630 0.00 0.00 0.00 1.94
1004 3835 3.654321 TCTATCTACCAGTCCATCCCGTA 59.346 47.826 0.00 0.00 0.00 4.02
1008 3839 1.141019 CCAGTCCATCCCGTACGTG 59.859 63.158 15.21 2.17 0.00 4.49
1043 3874 2.284625 AGGTCGAGCCATCCACCA 60.285 61.111 11.73 0.00 40.61 4.17
1046 3877 0.815615 GGTCGAGCCATCCACCAATC 60.816 60.000 2.39 0.00 37.17 2.67
1089 3920 2.517402 CTCCCGTCCTCTCCCTCG 60.517 72.222 0.00 0.00 0.00 4.63
1152 3983 3.787001 CACGGCCTCTTCCTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
1161 3992 1.004758 CTTCCTCCCCTCATCCCCA 59.995 63.158 0.00 0.00 0.00 4.96
1200 4031 1.111116 TCGACCACGACTCCACCTTT 61.111 55.000 0.00 0.00 43.81 3.11
1258 4089 2.973899 CGACTCCACCTCACCCTG 59.026 66.667 0.00 0.00 0.00 4.45
1524 4355 3.023949 GCTGTCCTCCATCGGCACT 62.024 63.158 0.00 0.00 36.16 4.40
1525 4356 1.599047 CTGTCCTCCATCGGCACTT 59.401 57.895 0.00 0.00 0.00 3.16
1570 4401 2.507769 CTCTCATGCACGCGCTCA 60.508 61.111 5.73 4.30 39.64 4.26
1626 4457 2.514013 CGCTGATGTTACGACGGCC 61.514 63.158 0.00 0.00 33.03 6.13
1639 4470 1.613630 ACGGCCAGAGGATCAGGTT 60.614 57.895 2.24 0.00 44.76 3.50
1656 4487 1.204941 GGTTCTGCTGATCAGTACGGT 59.795 52.381 23.38 0.00 42.07 4.83
1689 4520 2.026641 CACGGCATGGGAGATTTCAAT 58.973 47.619 0.00 0.00 0.00 2.57
1723 4554 2.481185 GACGACTTCGAGACTGAGACTT 59.519 50.000 5.47 0.00 43.02 3.01
1729 4560 0.453793 CGAGACTGAGACTTCGGCAT 59.546 55.000 0.00 0.00 32.63 4.40
1811 4645 1.027357 GCCGGAGATAAGTACGACCA 58.973 55.000 5.05 0.00 0.00 4.02
1841 4698 6.350906 AGCTAGTACTTGACGTATCTCTCTT 58.649 40.000 8.60 0.00 0.00 2.85
1847 4704 5.704888 ACTTGACGTATCTCTCTTTCTGTG 58.295 41.667 0.00 0.00 0.00 3.66
2063 4923 7.684670 TCTTGCATGATTTACGATTCTTACAC 58.315 34.615 0.00 0.00 0.00 2.90
2102 4962 2.287608 CCCTCCGTCTCAAAAAGTTTGC 60.288 50.000 0.00 0.00 0.00 3.68
2110 4970 6.438763 CGTCTCAAAAAGTTTGCCTTAGATT 58.561 36.000 0.00 0.00 31.48 2.40
2143 5003 9.517609 GATACGGATATATCTAGATGCGTTTTT 57.482 33.333 15.79 2.28 46.86 1.94
2194 5054 6.959639 ATTCAAGACAAGCTTTTTAGGACA 57.040 33.333 0.00 0.00 33.60 4.02
2385 5255 4.332819 CGTGGGGAAAAATGCTAGACTTAG 59.667 45.833 0.00 0.00 0.00 2.18
2520 5446 6.811954 TGCATGACCGATCTTAGTTATTACA 58.188 36.000 0.00 0.00 0.00 2.41
2537 5464 9.747898 AGTTATTACATTGTGTTCCTTTCCATA 57.252 29.630 0.00 0.00 0.00 2.74
2546 5473 8.642935 TTGTGTTCCTTTCCATATGTTGAATA 57.357 30.769 1.24 0.00 0.00 1.75
2614 5541 3.204382 TCCTTTTTGTCAGGAGGAAAGGT 59.796 43.478 11.60 0.00 44.16 3.50
2621 5548 2.835156 GTCAGGAGGAAAGGTAAGCTCT 59.165 50.000 0.00 0.00 0.00 4.09
2650 5577 8.381387 GGTCTTCTCTTTGTAATAATCGAACAC 58.619 37.037 0.00 0.00 0.00 3.32
2703 5634 5.754778 TCGATCTTATTCTTCGTTATCGCA 58.245 37.500 0.00 0.00 35.83 5.10
2717 5648 6.414336 TCGTTATCGCATATCAGCATGATGG 61.414 44.000 11.71 0.00 45.97 3.51
2726 5657 3.940209 TCAGCATGATGGTTTTGTTCC 57.060 42.857 11.71 0.00 42.56 3.62
2727 5658 3.229293 TCAGCATGATGGTTTTGTTCCA 58.771 40.909 11.71 0.00 42.56 3.53
2728 5659 3.005684 TCAGCATGATGGTTTTGTTCCAC 59.994 43.478 11.71 0.00 42.56 4.02
2729 5660 2.964464 AGCATGATGGTTTTGTTCCACA 59.036 40.909 0.00 0.00 37.81 4.17
2730 5661 3.059166 GCATGATGGTTTTGTTCCACAC 58.941 45.455 0.00 0.00 37.81 3.82
2731 5662 3.492309 GCATGATGGTTTTGTTCCACACA 60.492 43.478 0.00 0.00 37.81 3.72
2732 5663 3.791973 TGATGGTTTTGTTCCACACAC 57.208 42.857 0.00 0.00 37.81 3.82
2733 5664 3.092301 TGATGGTTTTGTTCCACACACA 58.908 40.909 0.00 0.00 37.81 3.72
2734 5665 3.119316 TGATGGTTTTGTTCCACACACAC 60.119 43.478 0.00 0.00 37.81 3.82
2735 5666 2.239400 TGGTTTTGTTCCACACACACA 58.761 42.857 0.00 0.00 33.98 3.72
2736 5667 2.029828 TGGTTTTGTTCCACACACACAC 60.030 45.455 0.00 0.00 33.98 3.82
2737 5668 2.029828 GGTTTTGTTCCACACACACACA 60.030 45.455 0.00 0.00 33.98 3.72
2738 5669 2.983803 GTTTTGTTCCACACACACACAC 59.016 45.455 0.00 0.00 33.98 3.82
2739 5670 1.897560 TTGTTCCACACACACACACA 58.102 45.000 0.00 0.00 33.98 3.72
2740 5671 1.160989 TGTTCCACACACACACACAC 58.839 50.000 0.00 0.00 0.00 3.82
2741 5672 1.160989 GTTCCACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
2742 5673 1.135803 GTTCCACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
2743 5674 0.035458 TCCACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72
2744 5675 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
2745 5676 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2746 5677 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2747 5678 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2748 5679 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2749 5680 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2750 5681 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2751 5682 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2752 5683 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2753 5684 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2770 5953 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2847 6041 4.392138 GGACAGGAAATTTAGTTCTCGTGG 59.608 45.833 0.00 0.00 0.00 4.94
2919 6113 8.669946 TTCTTTGAAATGTACACTACACATGA 57.330 30.769 0.00 0.00 42.23 3.07
2966 6160 8.364129 TGAAAGCATTTTTGTCCTTTATTGTC 57.636 30.769 0.00 0.00 39.27 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 168 9.793252 GGTCAGTTCACTATATTTAAGTCGTTA 57.207 33.333 0.00 0.00 0.00 3.18
166 169 8.308931 TGGTCAGTTCACTATATTTAAGTCGTT 58.691 33.333 0.00 0.00 0.00 3.85
167 170 7.833786 TGGTCAGTTCACTATATTTAAGTCGT 58.166 34.615 0.00 0.00 0.00 4.34
189 192 8.689972 TGTTAAAATTTTGGCATTTTTCATGGT 58.310 25.926 13.76 0.00 37.50 3.55
199 202 8.848182 ACATGTTTCATGTTAAAATTTTGGCAT 58.152 25.926 13.76 13.33 0.00 4.40
207 210 8.138712 ACACGGTTACATGTTTCATGTTAAAAT 58.861 29.630 18.22 2.86 33.76 1.82
228 231 4.868450 TTTTTCTACACTCAACACACGG 57.132 40.909 0.00 0.00 0.00 4.94
292 295 6.438425 AGTTAGAAATCATGAAACCTGGCATT 59.562 34.615 0.00 0.00 0.00 3.56
297 300 9.533253 AAACAAAGTTAGAAATCATGAAACCTG 57.467 29.630 0.00 2.86 0.00 4.00
299 302 9.528018 TCAAACAAAGTTAGAAATCATGAAACC 57.472 29.630 0.00 0.00 0.00 3.27
508 2909 6.484977 TGTTTGTTTTCTTTTCTTTGCTTGGT 59.515 30.769 0.00 0.00 0.00 3.67
523 2924 8.587952 AACTGCTAACCATATTGTTTGTTTTC 57.412 30.769 0.00 0.00 0.00 2.29
591 2992 2.636768 GCACCATGCTAAGTCAAACC 57.363 50.000 0.00 0.00 40.96 3.27
619 3020 4.026475 GGAAACTGCAGATTAGATTCGACG 60.026 45.833 23.35 0.00 30.40 5.12
627 3028 3.341823 AGCACTGGAAACTGCAGATTAG 58.658 45.455 23.35 12.62 38.14 1.73
634 3035 4.708726 AATTGATAGCACTGGAAACTGC 57.291 40.909 0.00 0.00 0.00 4.40
672 3074 3.120041 GCTGAAAGATCCTAAGAGCGAC 58.880 50.000 0.00 0.00 34.07 5.19
712 3114 6.892658 ATGAAAGCACAACATACCTTACAA 57.107 33.333 0.00 0.00 0.00 2.41
752 3160 1.922545 GGACCTTCGTTACATACACGC 59.077 52.381 0.00 0.00 37.57 5.34
762 3170 4.070009 GGTACAAAATGAGGACCTTCGTT 58.930 43.478 0.00 0.00 0.00 3.85
767 3175 2.370849 ACACGGTACAAAATGAGGACCT 59.629 45.455 0.00 0.00 0.00 3.85
835 3663 2.101415 AGGAGCTGCCAACTTTGTTTTC 59.899 45.455 0.00 0.00 40.02 2.29
1004 3835 2.350522 GATGGAAGAAGATGTGCACGT 58.649 47.619 12.38 12.38 0.00 4.49
1008 3839 2.208431 CCTCGATGGAAGAAGATGTGC 58.792 52.381 0.00 0.00 38.35 4.57
1043 3874 1.378514 GTGGTGGACGCCATGGATT 60.379 57.895 18.40 0.00 41.08 3.01
1077 3908 2.835895 GGGAGCGAGGGAGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
1101 3932 0.404040 AGAATTCTTGTTCGGCCCCA 59.596 50.000 0.88 0.00 33.36 4.96
1152 3983 3.958860 GCGGGGGATGGGGATGAG 61.959 72.222 0.00 0.00 0.00 2.90
1161 3992 0.711184 AGTATAGGCTAGCGGGGGAT 59.289 55.000 9.00 0.00 0.00 3.85
1213 4044 2.687200 CGTGGGGGAGGATGTGGA 60.687 66.667 0.00 0.00 0.00 4.02
1450 4281 2.686106 GCGTACCAGGAAGGGGGA 60.686 66.667 0.00 0.00 43.89 4.81
1482 4313 1.602605 AGGGTTTTGCTGCGGGTAC 60.603 57.895 0.00 0.00 0.00 3.34
1593 4424 1.691337 AGCGGGGGTACTTGGCATA 60.691 57.895 0.00 0.00 0.00 3.14
1626 4457 1.829849 TCAGCAGAACCTGATCCTCTG 59.170 52.381 0.00 6.78 36.96 3.35
1729 4560 4.735132 CTTGTCGCCTTCCGCCGA 62.735 66.667 0.00 0.00 36.73 5.54
1828 4662 5.298197 TCACACAGAAAGAGAGATACGTC 57.702 43.478 0.00 0.00 0.00 4.34
1841 4698 0.598419 CTCAGCACGCTCACACAGAA 60.598 55.000 0.00 0.00 0.00 3.02
1847 4704 2.024319 GACCACTCAGCACGCTCAC 61.024 63.158 0.00 0.00 0.00 3.51
2063 4923 6.433404 ACGGAGGGAGTATACACAATACATAG 59.567 42.308 5.50 0.00 42.63 2.23
2072 4932 2.928334 TGAGACGGAGGGAGTATACAC 58.072 52.381 5.50 0.00 0.00 2.90
2385 5255 2.486191 CCAGTGTCAGCCTATTCATCCC 60.486 54.545 0.00 0.00 0.00 3.85
2520 5446 7.537596 TTCAACATATGGAAAGGAACACAAT 57.462 32.000 7.80 0.00 0.00 2.71
2537 5464 9.874205 CAACACCAAGGAATAATTATTCAACAT 57.126 29.630 30.09 15.65 42.92 2.71
2546 5473 6.705825 GCAAGAAACAACACCAAGGAATAATT 59.294 34.615 0.00 0.00 0.00 1.40
2614 5541 5.930135 ACAAAGAGAAGACCAAAGAGCTTA 58.070 37.500 0.00 0.00 0.00 3.09
2621 5548 9.496873 TTCGATTATTACAAAGAGAAGACCAAA 57.503 29.630 0.00 0.00 0.00 3.28
2676 5603 8.847567 GCGATAACGAAGAATAAGATCGAAATA 58.152 33.333 5.62 0.00 42.66 1.40
2678 5605 6.693978 TGCGATAACGAAGAATAAGATCGAAA 59.306 34.615 5.62 0.00 42.66 3.46
2681 5608 6.618770 ATGCGATAACGAAGAATAAGATCG 57.381 37.500 0.00 0.00 42.66 3.69
2701 5632 4.940463 ACAAAACCATCATGCTGATATGC 58.060 39.130 0.00 0.00 34.28 3.14
2703 5634 5.657745 TGGAACAAAACCATCATGCTGATAT 59.342 36.000 0.00 0.00 31.83 1.63
2726 5657 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2727 5658 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2728 5659 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2729 5660 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2730 5661 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2731 5662 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2732 5663 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2733 5664 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2734 5665 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2735 5666 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2736 5667 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2737 5668 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2738 5669 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2739 5670 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2740 5671 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2741 5672 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2742 5673 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2743 5674 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2744 5675 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2745 5676 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2746 5677 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2747 5678 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2748 5679 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2749 5680 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2750 5681 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2751 5682 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2752 5683 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2753 5684 1.468127 CATGTGTGTGTGTGTGTGTGT 59.532 47.619 0.00 0.00 0.00 3.72
2770 5953 3.627123 TGGTTCAGCATAAATCCGTCATG 59.373 43.478 0.00 0.00 0.00 3.07
2803 5987 3.256136 CCACCTAGCCTCTATTAGTTCGG 59.744 52.174 0.00 0.00 0.00 4.30
2847 6041 9.546909 CAGTGAACACATTAATCTATTTGTGAC 57.453 33.333 10.73 5.92 41.50 3.67
2966 6160 8.292448 AGTGAAGTCATAAACAATTAGCTGTTG 58.708 33.333 10.94 10.94 39.47 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.