Multiple sequence alignment - TraesCS3A01G044100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G044100 chr3A 100.000 3747 0 0 1 3747 23854371 23858117 0.000000e+00 6920.0
1 TraesCS3A01G044100 chr3D 84.537 2354 190 89 545 2805 13285514 13283242 0.000000e+00 2170.0
2 TraesCS3A01G044100 chr3D 82.100 743 83 28 1220 1946 578590375 578591083 1.160000e-164 590.0
3 TraesCS3A01G044100 chr3D 92.424 330 25 0 2992 3321 13297932 13297603 4.380000e-129 472.0
4 TraesCS3A01G044100 chr3D 77.121 389 84 5 3347 3733 257740803 257740418 1.750000e-53 220.0
5 TraesCS3A01G044100 chr3B 86.509 1527 133 50 469 1969 19233391 19231912 0.000000e+00 1611.0
6 TraesCS3A01G044100 chr3B 86.161 831 71 23 2005 2803 19231797 19230979 0.000000e+00 857.0
7 TraesCS3A01G044100 chr3B 91.515 330 27 1 2992 3321 19253458 19253130 1.590000e-123 453.0
8 TraesCS3A01G044100 chr3B 80.220 637 75 24 1329 1945 545530823 545530218 7.430000e-117 431.0
9 TraesCS3A01G044100 chr3B 89.394 330 35 0 2992 3321 19227079 19226750 2.080000e-112 416.0
10 TraesCS3A01G044100 chr3B 80.645 465 56 20 1329 1783 545650524 545650084 2.790000e-86 329.0
11 TraesCS3A01G044100 chr3B 78.431 459 55 26 2006 2438 19224042 19223602 3.710000e-65 259.0
12 TraesCS3A01G044100 chrUn 95.013 762 35 2 2987 3747 296580543 296579784 0.000000e+00 1194.0
13 TraesCS3A01G044100 chrUn 95.013 762 35 2 2987 3747 335707204 335706445 0.000000e+00 1194.0
14 TraesCS3A01G044100 chrUn 78.164 719 85 39 2221 2908 36525474 36526151 3.510000e-105 392.0
15 TraesCS3A01G044100 chrUn 77.205 601 78 34 2221 2801 36549458 36550019 2.830000e-76 296.0
16 TraesCS3A01G044100 chrUn 90.000 120 9 1 2686 2805 296583357 296583241 6.480000e-33 152.0
17 TraesCS3A01G044100 chrUn 90.000 120 9 1 2686 2805 313913075 313913191 6.480000e-33 152.0
18 TraesCS3A01G044100 chr2B 83.693 742 75 25 1220 1946 74712106 74712816 0.000000e+00 658.0
19 TraesCS3A01G044100 chr2B 78.100 379 76 7 3357 3733 696824538 696824165 2.250000e-57 233.0
20 TraesCS3A01G044100 chr4D 83.019 742 75 21 1220 1946 168889717 168890422 3.180000e-175 625.0
21 TraesCS3A01G044100 chr4D 87.166 374 32 10 1500 1862 242981009 242980641 9.690000e-111 411.0
22 TraesCS3A01G044100 chr4D 86.147 231 25 5 1718 1946 289989246 289989471 3.740000e-60 243.0
23 TraesCS3A01G044100 chr4D 84.651 215 21 7 2179 2392 430885393 430885596 1.760000e-48 204.0
24 TraesCS3A01G044100 chr4D 89.655 58 4 2 2095 2152 430884877 430884932 5.190000e-09 73.1
25 TraesCS3A01G044100 chr5A 82.620 748 85 23 1220 1952 539824651 539823934 1.480000e-173 619.0
26 TraesCS3A01G044100 chr5A 82.219 748 88 23 1220 1952 374023422 374022705 1.490000e-168 603.0
27 TraesCS3A01G044100 chr5A 84.848 231 28 5 1718 1946 433440870 433441095 3.770000e-55 226.0
28 TraesCS3A01G044100 chr5A 84.186 215 20 8 2179 2392 49937829 49938030 2.950000e-46 196.0
29 TraesCS3A01G044100 chr2D 82.749 742 81 25 1220 1946 92463268 92463977 5.320000e-173 617.0
30 TraesCS3A01G044100 chr2D 87.936 373 30 10 1500 1862 166480421 166480788 3.460000e-115 425.0
31 TraesCS3A01G044100 chr7A 82.219 748 88 23 1220 1952 25223689 25222972 1.490000e-168 603.0
32 TraesCS3A01G044100 chr7A 82.267 750 83 27 1223 1952 116467439 116466720 1.490000e-168 603.0
33 TraesCS3A01G044100 chr1B 81.757 740 83 23 1227 1945 200382552 200381844 4.200000e-159 571.0
34 TraesCS3A01G044100 chr1B 78.351 388 81 3 3347 3733 91801504 91801119 8.040000e-62 248.0
35 TraesCS3A01G044100 chr7B 81.546 634 72 21 1324 1945 686193193 686193793 7.280000e-132 481.0
36 TraesCS3A01G044100 chr2A 86.436 376 36 9 1497 1862 443005322 443005692 7.540000e-107 398.0
37 TraesCS3A01G044100 chr5B 79.703 404 79 3 3342 3745 178295934 178296334 4.740000e-74 289.0
38 TraesCS3A01G044100 chr5B 78.836 378 76 4 3357 3733 174661418 174661792 6.210000e-63 252.0
39 TraesCS3A01G044100 chr4A 86.498 237 25 5 1718 1952 3774304 3774073 1.730000e-63 254.0
40 TraesCS3A01G044100 chr4A 85.581 215 19 7 2179 2392 733463985 733463782 8.150000e-52 215.0
41 TraesCS3A01G044100 chr4A 87.931 58 5 2 2095 2152 733464086 733464031 2.420000e-07 67.6
42 TraesCS3A01G044100 chr4B 78.628 379 75 6 3357 3733 669636157 669635783 2.890000e-61 246.0
43 TraesCS3A01G044100 chr1D 87.442 215 14 9 2179 2392 319574218 319574420 6.260000e-58 235.0
44 TraesCS3A01G044100 chr6B 78.133 375 77 5 3361 3733 435619272 435619643 2.250000e-57 233.0
45 TraesCS3A01G044100 chr1A 82.143 112 13 5 158 267 144566997 144566891 5.150000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G044100 chr3A 23854371 23858117 3746 False 6920.00 6920 100.00000 1 3747 1 chr3A.!!$F1 3746
1 TraesCS3A01G044100 chr3D 13283242 13285514 2272 True 2170.00 2170 84.53700 545 2805 1 chr3D.!!$R1 2260
2 TraesCS3A01G044100 chr3D 578590375 578591083 708 False 590.00 590 82.10000 1220 1946 1 chr3D.!!$F1 726
3 TraesCS3A01G044100 chr3B 19223602 19233391 9789 True 785.75 1611 85.12375 469 3321 4 chr3B.!!$R4 2852
4 TraesCS3A01G044100 chr3B 545530218 545530823 605 True 431.00 431 80.22000 1329 1945 1 chr3B.!!$R2 616
5 TraesCS3A01G044100 chrUn 335706445 335707204 759 True 1194.00 1194 95.01300 2987 3747 1 chrUn.!!$R1 760
6 TraesCS3A01G044100 chrUn 296579784 296583357 3573 True 673.00 1194 92.50650 2686 3747 2 chrUn.!!$R2 1061
7 TraesCS3A01G044100 chrUn 36525474 36526151 677 False 392.00 392 78.16400 2221 2908 1 chrUn.!!$F1 687
8 TraesCS3A01G044100 chrUn 36549458 36550019 561 False 296.00 296 77.20500 2221 2801 1 chrUn.!!$F2 580
9 TraesCS3A01G044100 chr2B 74712106 74712816 710 False 658.00 658 83.69300 1220 1946 1 chr2B.!!$F1 726
10 TraesCS3A01G044100 chr4D 168889717 168890422 705 False 625.00 625 83.01900 1220 1946 1 chr4D.!!$F1 726
11 TraesCS3A01G044100 chr5A 539823934 539824651 717 True 619.00 619 82.62000 1220 1952 1 chr5A.!!$R2 732
12 TraesCS3A01G044100 chr5A 374022705 374023422 717 True 603.00 603 82.21900 1220 1952 1 chr5A.!!$R1 732
13 TraesCS3A01G044100 chr2D 92463268 92463977 709 False 617.00 617 82.74900 1220 1946 1 chr2D.!!$F1 726
14 TraesCS3A01G044100 chr7A 25222972 25223689 717 True 603.00 603 82.21900 1220 1952 1 chr7A.!!$R1 732
15 TraesCS3A01G044100 chr7A 116466720 116467439 719 True 603.00 603 82.26700 1223 1952 1 chr7A.!!$R2 729
16 TraesCS3A01G044100 chr1B 200381844 200382552 708 True 571.00 571 81.75700 1227 1945 1 chr1B.!!$R2 718
17 TraesCS3A01G044100 chr7B 686193193 686193793 600 False 481.00 481 81.54600 1324 1945 1 chr7B.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 302 0.030908 GGTCGTTGCCTATCCTCTCG 59.969 60.0 0.00 0.0 0.00 4.04 F
1145 1163 0.030235 CGTACGCACTAGGCAGCATA 59.970 55.0 0.52 0.0 45.17 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2478 0.325933 CCCCTGCAATCACTCAGTCA 59.674 55.0 0.0 0.0 0.00 3.41 R
2875 7654 0.039618 TTCCAGTTGGCCCAAGATCC 59.960 55.0 0.0 0.0 34.44 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.197434 GGTTCGTTTTTCAGAATCCCG 57.803 47.619 0.00 0.00 0.00 5.14
21 22 2.581637 GTTCGTTTTTCAGAATCCCGC 58.418 47.619 0.00 0.00 0.00 6.13
22 23 1.161843 TCGTTTTTCAGAATCCCGCC 58.838 50.000 0.00 0.00 0.00 6.13
23 24 0.170339 CGTTTTTCAGAATCCCGCCC 59.830 55.000 0.00 0.00 0.00 6.13
24 25 0.170339 GTTTTTCAGAATCCCGCCCG 59.830 55.000 0.00 0.00 0.00 6.13
25 26 0.963355 TTTTTCAGAATCCCGCCCGG 60.963 55.000 0.00 0.00 0.00 5.73
26 27 2.132089 TTTTCAGAATCCCGCCCGGT 62.132 55.000 0.00 0.00 0.00 5.28
27 28 2.132089 TTTCAGAATCCCGCCCGGTT 62.132 55.000 0.00 0.00 0.00 4.44
28 29 2.045340 CAGAATCCCGCCCGGTTT 60.045 61.111 0.00 0.00 0.00 3.27
29 30 1.677633 CAGAATCCCGCCCGGTTTT 60.678 57.895 0.00 0.00 0.00 2.43
30 31 1.677633 AGAATCCCGCCCGGTTTTG 60.678 57.895 0.00 0.00 0.00 2.44
31 32 2.678580 AATCCCGCCCGGTTTTGG 60.679 61.111 0.00 0.00 0.00 3.28
52 53 3.356529 GAATCTTCCAGAAGCTTCCCA 57.643 47.619 22.81 4.15 37.50 4.37
53 54 3.690460 GAATCTTCCAGAAGCTTCCCAA 58.310 45.455 22.81 11.76 37.50 4.12
54 55 2.568623 TCTTCCAGAAGCTTCCCAAC 57.431 50.000 22.81 0.00 38.28 3.77
55 56 2.057922 TCTTCCAGAAGCTTCCCAACT 58.942 47.619 22.81 0.59 38.28 3.16
56 57 2.039084 TCTTCCAGAAGCTTCCCAACTC 59.961 50.000 22.81 0.00 38.28 3.01
57 58 0.321671 TCCAGAAGCTTCCCAACTCG 59.678 55.000 22.81 3.13 0.00 4.18
58 59 1.301677 CCAGAAGCTTCCCAACTCGC 61.302 60.000 22.81 0.00 0.00 5.03
59 60 1.374758 AGAAGCTTCCCAACTCGCG 60.375 57.895 22.81 0.00 0.00 5.87
60 61 1.374252 GAAGCTTCCCAACTCGCGA 60.374 57.895 15.97 9.26 0.00 5.87
61 62 1.627550 GAAGCTTCCCAACTCGCGAC 61.628 60.000 15.97 0.00 0.00 5.19
62 63 2.357034 GCTTCCCAACTCGCGACA 60.357 61.111 3.71 0.00 0.00 4.35
63 64 2.668280 GCTTCCCAACTCGCGACAC 61.668 63.158 3.71 0.00 0.00 3.67
64 65 2.027625 CTTCCCAACTCGCGACACC 61.028 63.158 3.71 0.00 0.00 4.16
65 66 2.436087 CTTCCCAACTCGCGACACCT 62.436 60.000 3.71 0.00 0.00 4.00
66 67 2.430382 TTCCCAACTCGCGACACCTC 62.430 60.000 3.71 0.00 0.00 3.85
67 68 2.805353 CCAACTCGCGACACCTCG 60.805 66.667 3.71 0.00 43.28 4.63
68 69 2.254350 CAACTCGCGACACCTCGA 59.746 61.111 3.71 0.00 43.06 4.04
69 70 2.081212 CAACTCGCGACACCTCGAC 61.081 63.158 3.71 0.00 43.06 4.20
70 71 3.590443 AACTCGCGACACCTCGACG 62.590 63.158 3.71 0.00 43.06 5.12
76 77 4.736896 GACACCTCGACGCCACCC 62.737 72.222 0.00 0.00 0.00 4.61
78 79 4.003788 CACCTCGACGCCACCCTT 62.004 66.667 0.00 0.00 0.00 3.95
79 80 3.692406 ACCTCGACGCCACCCTTC 61.692 66.667 0.00 0.00 0.00 3.46
80 81 3.382832 CCTCGACGCCACCCTTCT 61.383 66.667 0.00 0.00 0.00 2.85
81 82 2.182030 CTCGACGCCACCCTTCTC 59.818 66.667 0.00 0.00 0.00 2.87
82 83 3.358076 CTCGACGCCACCCTTCTCC 62.358 68.421 0.00 0.00 0.00 3.71
83 84 4.452733 CGACGCCACCCTTCTCCC 62.453 72.222 0.00 0.00 0.00 4.30
84 85 4.097361 GACGCCACCCTTCTCCCC 62.097 72.222 0.00 0.00 0.00 4.81
85 86 4.974438 ACGCCACCCTTCTCCCCA 62.974 66.667 0.00 0.00 0.00 4.96
86 87 3.646715 CGCCACCCTTCTCCCCAA 61.647 66.667 0.00 0.00 0.00 4.12
87 88 2.356667 GCCACCCTTCTCCCCAAG 59.643 66.667 0.00 0.00 0.00 3.61
88 89 2.356667 CCACCCTTCTCCCCAAGC 59.643 66.667 0.00 0.00 0.00 4.01
89 90 2.045926 CACCCTTCTCCCCAAGCG 60.046 66.667 0.00 0.00 0.00 4.68
90 91 4.035102 ACCCTTCTCCCCAAGCGC 62.035 66.667 0.00 0.00 0.00 5.92
92 93 4.394712 CCTTCTCCCCAAGCGCGT 62.395 66.667 8.43 0.00 0.00 6.01
93 94 2.577059 CTTCTCCCCAAGCGCGTA 59.423 61.111 8.43 0.00 0.00 4.42
94 95 1.810030 CTTCTCCCCAAGCGCGTAC 60.810 63.158 8.43 0.00 0.00 3.67
95 96 3.305177 TTCTCCCCAAGCGCGTACC 62.305 63.158 8.43 0.00 0.00 3.34
96 97 4.077184 CTCCCCAAGCGCGTACCA 62.077 66.667 8.43 0.00 0.00 3.25
97 98 4.382320 TCCCCAAGCGCGTACCAC 62.382 66.667 8.43 0.00 0.00 4.16
116 117 3.055580 CCCCTCGGCTATGAGCTC 58.944 66.667 6.82 6.82 41.99 4.09
117 118 2.647875 CCCTCGGCTATGAGCTCG 59.352 66.667 9.64 0.00 41.99 5.03
118 119 2.647875 CCTCGGCTATGAGCTCGG 59.352 66.667 9.64 3.02 41.99 4.63
119 120 2.049618 CTCGGCTATGAGCTCGGC 60.050 66.667 9.64 12.83 41.99 5.54
120 121 2.833121 TCGGCTATGAGCTCGGCA 60.833 61.111 21.58 2.59 41.99 5.69
121 122 2.355599 CGGCTATGAGCTCGGCAG 60.356 66.667 21.58 16.22 41.99 4.85
122 123 2.849964 CGGCTATGAGCTCGGCAGA 61.850 63.158 21.58 1.25 41.99 4.26
123 124 1.443407 GGCTATGAGCTCGGCAGAA 59.557 57.895 21.58 0.57 41.99 3.02
124 125 0.599728 GGCTATGAGCTCGGCAGAAG 60.600 60.000 21.58 9.43 41.99 2.85
125 126 1.220817 GCTATGAGCTCGGCAGAAGC 61.221 60.000 17.32 11.77 38.45 3.86
135 136 3.267860 GCAGAAGCCGCCATCGAG 61.268 66.667 0.00 0.00 38.10 4.04
136 137 2.496341 CAGAAGCCGCCATCGAGA 59.504 61.111 0.00 0.00 38.10 4.04
137 138 1.880340 CAGAAGCCGCCATCGAGAC 60.880 63.158 0.00 0.00 38.10 3.36
138 139 2.956964 GAAGCCGCCATCGAGACG 60.957 66.667 0.00 0.00 38.10 4.18
139 140 3.411418 GAAGCCGCCATCGAGACGA 62.411 63.158 6.13 0.00 41.13 4.20
140 141 3.701604 AAGCCGCCATCGAGACGAC 62.702 63.158 6.13 0.00 39.18 4.34
142 143 4.570663 CCGCCATCGAGACGACCC 62.571 72.222 6.13 0.00 39.18 4.46
143 144 4.570663 CGCCATCGAGACGACCCC 62.571 72.222 0.00 0.00 39.18 4.95
144 145 4.570663 GCCATCGAGACGACCCCG 62.571 72.222 0.00 0.00 39.18 5.73
145 146 2.827190 CCATCGAGACGACCCCGA 60.827 66.667 0.00 0.00 39.18 5.14
146 147 2.408022 CATCGAGACGACCCCGAC 59.592 66.667 0.00 0.00 39.18 4.79
147 148 2.827642 ATCGAGACGACCCCGACC 60.828 66.667 0.00 0.00 39.18 4.79
148 149 3.633609 ATCGAGACGACCCCGACCA 62.634 63.158 0.00 0.00 39.18 4.02
149 150 4.112341 CGAGACGACCCCGACCAC 62.112 72.222 0.00 0.00 39.50 4.16
150 151 3.756727 GAGACGACCCCGACCACC 61.757 72.222 0.00 0.00 39.50 4.61
151 152 4.608774 AGACGACCCCGACCACCA 62.609 66.667 0.00 0.00 39.50 4.17
152 153 4.368543 GACGACCCCGACCACCAC 62.369 72.222 0.00 0.00 39.50 4.16
194 195 4.457496 CCAGCGCCAGTGACGGAT 62.457 66.667 2.29 0.00 0.00 4.18
195 196 3.190849 CAGCGCCAGTGACGGATG 61.191 66.667 2.29 0.00 0.00 3.51
196 197 3.381983 AGCGCCAGTGACGGATGA 61.382 61.111 2.29 0.00 0.00 2.92
197 198 2.887568 GCGCCAGTGACGGATGAG 60.888 66.667 0.00 0.00 0.00 2.90
198 199 2.885113 CGCCAGTGACGGATGAGA 59.115 61.111 0.00 0.00 0.00 3.27
199 200 1.226802 CGCCAGTGACGGATGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
200 201 1.142748 GCCAGTGACGGATGAGAGG 59.857 63.158 0.00 0.00 0.00 3.69
201 202 1.323271 GCCAGTGACGGATGAGAGGA 61.323 60.000 0.00 0.00 0.00 3.71
202 203 0.743688 CCAGTGACGGATGAGAGGAG 59.256 60.000 0.00 0.00 0.00 3.69
203 204 0.743688 CAGTGACGGATGAGAGGAGG 59.256 60.000 0.00 0.00 0.00 4.30
204 205 1.040339 AGTGACGGATGAGAGGAGGC 61.040 60.000 0.00 0.00 0.00 4.70
205 206 2.121538 TGACGGATGAGAGGAGGCG 61.122 63.158 0.00 0.00 0.00 5.52
206 207 3.492311 GACGGATGAGAGGAGGCGC 62.492 68.421 0.00 0.00 0.00 6.53
207 208 3.531207 CGGATGAGAGGAGGCGCA 61.531 66.667 10.83 0.00 0.00 6.09
208 209 2.420890 GGATGAGAGGAGGCGCAG 59.579 66.667 10.83 0.00 0.00 5.18
209 210 2.420890 GATGAGAGGAGGCGCAGG 59.579 66.667 10.83 0.00 0.00 4.85
210 211 3.160047 ATGAGAGGAGGCGCAGGG 61.160 66.667 10.83 0.00 0.00 4.45
222 223 3.883549 GCAGGGGAGGGAGCCATC 61.884 72.222 0.00 0.00 0.00 3.51
223 224 3.554342 CAGGGGAGGGAGCCATCG 61.554 72.222 0.00 0.00 0.00 3.84
224 225 4.888325 AGGGGAGGGAGCCATCGG 62.888 72.222 0.00 0.00 0.00 4.18
234 235 4.492160 GCCATCGGCGACTCGTGA 62.492 66.667 13.76 0.00 39.62 4.35
235 236 2.180769 CCATCGGCGACTCGTGAA 59.819 61.111 13.76 0.00 0.00 3.18
236 237 1.874019 CCATCGGCGACTCGTGAAG 60.874 63.158 13.76 0.00 0.00 3.02
237 238 2.202623 ATCGGCGACTCGTGAAGC 60.203 61.111 13.76 0.00 0.00 3.86
238 239 2.701780 ATCGGCGACTCGTGAAGCT 61.702 57.895 13.76 0.00 0.00 3.74
239 240 2.600122 ATCGGCGACTCGTGAAGCTC 62.600 60.000 13.76 0.00 0.00 4.09
240 241 2.507324 GGCGACTCGTGAAGCTCC 60.507 66.667 0.00 0.00 0.00 4.70
241 242 2.507324 GCGACTCGTGAAGCTCCC 60.507 66.667 0.00 0.00 0.00 4.30
242 243 2.182030 CGACTCGTGAAGCTCCCC 59.818 66.667 0.00 0.00 0.00 4.81
243 244 2.579738 GACTCGTGAAGCTCCCCC 59.420 66.667 0.00 0.00 0.00 5.40
296 297 2.509422 GGGGGTCGTTGCCTATCC 59.491 66.667 0.00 0.00 0.00 2.59
297 298 2.070650 GGGGGTCGTTGCCTATCCT 61.071 63.158 0.00 0.00 0.00 3.24
298 299 1.446366 GGGGTCGTTGCCTATCCTC 59.554 63.158 0.00 0.00 0.00 3.71
299 300 1.049289 GGGGTCGTTGCCTATCCTCT 61.049 60.000 0.00 0.00 0.00 3.69
300 301 0.389757 GGGTCGTTGCCTATCCTCTC 59.610 60.000 0.00 0.00 0.00 3.20
301 302 0.030908 GGTCGTTGCCTATCCTCTCG 59.969 60.000 0.00 0.00 0.00 4.04
302 303 1.022735 GTCGTTGCCTATCCTCTCGA 58.977 55.000 0.00 0.00 0.00 4.04
303 304 1.002251 GTCGTTGCCTATCCTCTCGAG 60.002 57.143 5.93 5.93 0.00 4.04
323 324 2.519013 GGATATGCCTTGTCATTCCCC 58.481 52.381 0.00 0.00 0.00 4.81
324 325 2.519013 GATATGCCTTGTCATTCCCCC 58.481 52.381 0.00 0.00 0.00 5.40
352 353 6.489127 TTTCCGTTCTATAACAACACATGG 57.511 37.500 0.00 0.00 35.16 3.66
353 354 5.408880 TCCGTTCTATAACAACACATGGA 57.591 39.130 0.00 0.00 35.16 3.41
354 355 5.984725 TCCGTTCTATAACAACACATGGAT 58.015 37.500 0.00 0.00 35.16 3.41
355 356 7.114866 TCCGTTCTATAACAACACATGGATA 57.885 36.000 0.00 0.00 35.16 2.59
356 357 7.732025 TCCGTTCTATAACAACACATGGATAT 58.268 34.615 0.00 0.00 35.16 1.63
357 358 8.208224 TCCGTTCTATAACAACACATGGATATT 58.792 33.333 0.00 0.00 35.16 1.28
358 359 8.836413 CCGTTCTATAACAACACATGGATATTT 58.164 33.333 0.00 0.00 35.16 1.40
366 367 8.438676 AACAACACATGGATATTTAGCTACTC 57.561 34.615 0.00 0.00 0.00 2.59
367 368 6.992715 ACAACACATGGATATTTAGCTACTCC 59.007 38.462 0.00 0.00 0.00 3.85
368 369 6.115448 ACACATGGATATTTAGCTACTCCC 57.885 41.667 0.00 0.00 0.00 4.30
369 370 5.846714 ACACATGGATATTTAGCTACTCCCT 59.153 40.000 0.00 0.00 0.00 4.20
370 371 6.014156 ACACATGGATATTTAGCTACTCCCTC 60.014 42.308 0.00 0.00 0.00 4.30
371 372 5.485708 ACATGGATATTTAGCTACTCCCTCC 59.514 44.000 0.00 0.00 0.00 4.30
372 373 4.087182 TGGATATTTAGCTACTCCCTCCG 58.913 47.826 0.00 0.00 0.00 4.63
373 374 4.202641 TGGATATTTAGCTACTCCCTCCGA 60.203 45.833 0.00 0.00 0.00 4.55
374 375 4.957327 GGATATTTAGCTACTCCCTCCGAT 59.043 45.833 0.00 0.00 0.00 4.18
375 376 5.068067 GGATATTTAGCTACTCCCTCCGATC 59.932 48.000 0.00 0.00 0.00 3.69
376 377 2.289592 TTAGCTACTCCCTCCGATCC 57.710 55.000 0.00 0.00 0.00 3.36
377 378 1.146452 TAGCTACTCCCTCCGATCCA 58.854 55.000 0.00 0.00 0.00 3.41
378 379 0.468400 AGCTACTCCCTCCGATCCAC 60.468 60.000 0.00 0.00 0.00 4.02
379 380 0.755698 GCTACTCCCTCCGATCCACA 60.756 60.000 0.00 0.00 0.00 4.17
380 381 1.776662 CTACTCCCTCCGATCCACAA 58.223 55.000 0.00 0.00 0.00 3.33
381 382 1.683917 CTACTCCCTCCGATCCACAAG 59.316 57.143 0.00 0.00 0.00 3.16
382 383 0.252284 ACTCCCTCCGATCCACAAGT 60.252 55.000 0.00 0.00 0.00 3.16
383 384 1.006758 ACTCCCTCCGATCCACAAGTA 59.993 52.381 0.00 0.00 0.00 2.24
384 385 2.108168 CTCCCTCCGATCCACAAGTAA 58.892 52.381 0.00 0.00 0.00 2.24
385 386 2.700897 CTCCCTCCGATCCACAAGTAAT 59.299 50.000 0.00 0.00 0.00 1.89
386 387 3.895656 CTCCCTCCGATCCACAAGTAATA 59.104 47.826 0.00 0.00 0.00 0.98
387 388 4.489737 TCCCTCCGATCCACAAGTAATAT 58.510 43.478 0.00 0.00 0.00 1.28
388 389 5.647230 TCCCTCCGATCCACAAGTAATATA 58.353 41.667 0.00 0.00 0.00 0.86
389 390 5.715279 TCCCTCCGATCCACAAGTAATATAG 59.285 44.000 0.00 0.00 0.00 1.31
390 391 5.480772 CCCTCCGATCCACAAGTAATATAGT 59.519 44.000 0.00 0.00 0.00 2.12
391 392 6.662234 CCCTCCGATCCACAAGTAATATAGTA 59.338 42.308 0.00 0.00 0.00 1.82
392 393 7.177921 CCCTCCGATCCACAAGTAATATAGTAA 59.822 40.741 0.00 0.00 0.00 2.24
393 394 8.750298 CCTCCGATCCACAAGTAATATAGTAAT 58.250 37.037 0.00 0.00 0.00 1.89
433 434 8.597227 TGTACTAAAACATCGACAAATAATCCG 58.403 33.333 0.00 0.00 0.00 4.18
434 435 7.011828 ACTAAAACATCGACAAATAATCCGG 57.988 36.000 0.00 0.00 0.00 5.14
435 436 6.819649 ACTAAAACATCGACAAATAATCCGGA 59.180 34.615 6.61 6.61 0.00 5.14
436 437 6.693315 AAAACATCGACAAATAATCCGGAT 57.307 33.333 12.38 12.38 0.00 4.18
437 438 5.673337 AACATCGACAAATAATCCGGATG 57.327 39.130 19.95 9.33 0.00 3.51
438 439 4.956085 ACATCGACAAATAATCCGGATGA 58.044 39.130 19.95 11.83 0.00 2.92
439 440 4.750098 ACATCGACAAATAATCCGGATGAC 59.250 41.667 19.95 6.04 0.00 3.06
440 441 4.394439 TCGACAAATAATCCGGATGACA 57.606 40.909 19.95 6.93 0.00 3.58
441 442 4.956085 TCGACAAATAATCCGGATGACAT 58.044 39.130 19.95 9.15 0.00 3.06
442 443 4.749598 TCGACAAATAATCCGGATGACATG 59.250 41.667 19.95 15.24 0.00 3.21
443 444 4.083855 CGACAAATAATCCGGATGACATGG 60.084 45.833 19.95 9.09 0.00 3.66
444 445 5.047566 ACAAATAATCCGGATGACATGGA 57.952 39.130 19.95 0.00 35.96 3.41
445 446 5.065914 ACAAATAATCCGGATGACATGGAG 58.934 41.667 19.95 6.28 34.75 3.86
446 447 4.982241 AATAATCCGGATGACATGGAGT 57.018 40.909 19.95 0.57 34.75 3.85
447 448 2.627515 AATCCGGATGACATGGAGTG 57.372 50.000 19.95 0.00 34.75 3.51
448 449 0.761187 ATCCGGATGACATGGAGTGG 59.239 55.000 18.33 0.00 34.75 4.00
449 450 0.617535 TCCGGATGACATGGAGTGGT 60.618 55.000 0.00 0.00 0.00 4.16
450 451 1.119684 CCGGATGACATGGAGTGGTA 58.880 55.000 0.00 0.00 0.00 3.25
451 452 1.484653 CCGGATGACATGGAGTGGTAA 59.515 52.381 0.00 0.00 0.00 2.85
452 453 2.093181 CCGGATGACATGGAGTGGTAAA 60.093 50.000 0.00 0.00 0.00 2.01
453 454 2.936498 CGGATGACATGGAGTGGTAAAC 59.064 50.000 0.00 0.00 0.00 2.01
454 455 3.618752 CGGATGACATGGAGTGGTAAACA 60.619 47.826 0.00 0.00 0.00 2.83
455 456 4.331968 GGATGACATGGAGTGGTAAACAA 58.668 43.478 0.00 0.00 0.00 2.83
456 457 4.949856 GGATGACATGGAGTGGTAAACAAT 59.050 41.667 0.00 0.00 0.00 2.71
457 458 5.163622 GGATGACATGGAGTGGTAAACAATG 60.164 44.000 0.00 0.00 0.00 2.82
458 459 4.078537 TGACATGGAGTGGTAAACAATGG 58.921 43.478 0.00 0.00 0.00 3.16
459 460 4.079253 GACATGGAGTGGTAAACAATGGT 58.921 43.478 0.00 0.00 0.00 3.55
460 461 5.221945 TGACATGGAGTGGTAAACAATGGTA 60.222 40.000 0.00 0.00 0.00 3.25
461 462 5.253330 ACATGGAGTGGTAAACAATGGTAG 58.747 41.667 0.00 0.00 0.00 3.18
462 463 3.681593 TGGAGTGGTAAACAATGGTAGC 58.318 45.455 0.00 0.00 0.00 3.58
463 464 3.014623 GGAGTGGTAAACAATGGTAGCC 58.985 50.000 0.00 0.00 0.00 3.93
464 465 3.560453 GGAGTGGTAAACAATGGTAGCCA 60.560 47.826 0.00 0.00 38.19 4.75
465 466 3.686016 AGTGGTAAACAATGGTAGCCAG 58.314 45.455 0.00 0.00 36.75 4.85
466 467 2.163613 GTGGTAAACAATGGTAGCCAGC 59.836 50.000 0.00 0.00 36.75 4.85
467 468 1.400494 GGTAAACAATGGTAGCCAGCG 59.600 52.381 0.00 0.00 36.75 5.18
487 488 2.713976 CGAAGCAAATATTTTAGGCGCG 59.286 45.455 0.00 0.00 0.00 6.86
489 490 0.770008 GCAAATATTTTAGGCGCGCG 59.230 50.000 28.44 28.44 0.00 6.86
497 498 0.808453 TTTAGGCGCGCGATAAAGCT 60.808 50.000 37.18 18.79 34.40 3.74
504 505 2.237751 CGCGATAAAGCTGTCCCGG 61.238 63.158 0.00 0.00 34.40 5.73
511 512 5.051816 CGATAAAGCTGTCCCGGTTAATAA 58.948 41.667 0.00 0.00 0.00 1.40
514 521 5.830000 AAAGCTGTCCCGGTTAATAAATC 57.170 39.130 0.00 0.00 0.00 2.17
518 525 6.838382 AGCTGTCCCGGTTAATAAATCTTAT 58.162 36.000 0.00 0.00 0.00 1.73
522 529 9.730420 CTGTCCCGGTTAATAAATCTTATTTTG 57.270 33.333 0.00 0.00 0.00 2.44
585 592 4.483950 TCTGGTACTCCCTCCATATCTTG 58.516 47.826 0.00 0.00 33.01 3.02
586 593 4.170053 TCTGGTACTCCCTCCATATCTTGA 59.830 45.833 0.00 0.00 33.01 3.02
587 594 4.483950 TGGTACTCCCTCCATATCTTGAG 58.516 47.826 0.00 0.00 0.00 3.02
590 597 6.183361 TGGTACTCCCTCCATATCTTGAGTAT 60.183 42.308 0.00 0.00 37.57 2.12
631 638 8.547173 AGTACTGTAAGATAGTATATACCGGCT 58.453 37.037 9.32 1.71 37.43 5.52
633 640 8.053026 ACTGTAAGATAGTATATACCGGCTTG 57.947 38.462 9.32 2.63 37.43 4.01
636 643 8.737175 TGTAAGATAGTATATACCGGCTTGAAG 58.263 37.037 9.32 0.00 0.00 3.02
646 653 2.091541 CCGGCTTGAAGGAGCAAAATA 58.908 47.619 0.00 0.00 44.49 1.40
652 659 6.238731 CGGCTTGAAGGAGCAAAATATAATGA 60.239 38.462 0.00 0.00 44.49 2.57
657 664 5.907197 AGGAGCAAAATATAATGACGACG 57.093 39.130 0.00 0.00 0.00 5.12
658 665 4.211374 AGGAGCAAAATATAATGACGACGC 59.789 41.667 0.00 0.00 0.00 5.19
659 666 4.025229 GGAGCAAAATATAATGACGACGCA 60.025 41.667 0.00 0.00 0.00 5.24
660 667 5.334105 GGAGCAAAATATAATGACGACGCAT 60.334 40.000 0.00 0.00 0.00 4.73
661 668 5.443261 AGCAAAATATAATGACGACGCATG 58.557 37.500 0.00 0.00 0.00 4.06
665 672 2.955607 ATAATGACGACGCATGCATG 57.044 45.000 22.70 22.70 0.00 4.06
705 716 0.874175 TGGCTCACAAACGACACTCG 60.874 55.000 0.00 0.00 46.93 4.18
707 718 1.487452 GCTCACAAACGACACTCGCA 61.487 55.000 0.00 0.00 45.12 5.10
708 719 0.504384 CTCACAAACGACACTCGCAG 59.496 55.000 0.00 0.00 45.12 5.18
721 732 1.765314 ACTCGCAGATTATGGGCTTCT 59.235 47.619 0.00 0.00 41.51 2.85
867 882 1.424493 CGCTGTCCGCTCCAAAGATC 61.424 60.000 0.00 0.00 36.13 2.75
885 900 0.613777 TCGCTCCTCTTTCCTTTCCC 59.386 55.000 0.00 0.00 0.00 3.97
941 956 3.280532 CTGCTTAAAAGACGCAGCG 57.719 52.632 14.82 14.82 43.75 5.18
954 969 1.819229 GCAGCGGAGAAGAGATCCA 59.181 57.895 0.00 0.00 36.57 3.41
981 996 1.285078 TCTCTCATTCTCCCCGTCTCA 59.715 52.381 0.00 0.00 0.00 3.27
992 1007 2.027625 CCGTCTCAGTTTCCGGTGC 61.028 63.158 0.00 0.00 35.78 5.01
1111 1129 1.890979 GGCCACCTCATCATCTGCG 60.891 63.158 0.00 0.00 0.00 5.18
1127 1145 2.722548 CGAGATCGCGCAGGTACG 60.723 66.667 8.75 3.35 0.00 3.67
1128 1146 2.408022 GAGATCGCGCAGGTACGT 59.592 61.111 8.75 0.00 34.88 3.57
1129 1147 1.645455 GAGATCGCGCAGGTACGTA 59.355 57.895 8.75 0.00 34.88 3.57
1130 1148 0.656786 GAGATCGCGCAGGTACGTAC 60.657 60.000 17.56 17.56 34.88 3.67
1131 1149 2.002401 GATCGCGCAGGTACGTACG 61.002 63.158 18.98 15.01 34.88 3.67
1135 1153 2.177531 CGCAGGTACGTACGCACT 59.822 61.111 16.72 8.19 0.00 4.40
1136 1154 1.425031 CGCAGGTACGTACGCACTA 59.575 57.895 16.72 0.00 0.00 2.74
1137 1155 0.588233 CGCAGGTACGTACGCACTAG 60.588 60.000 16.72 10.47 0.00 2.57
1138 1156 0.248377 GCAGGTACGTACGCACTAGG 60.248 60.000 16.72 7.67 0.00 3.02
1139 1157 0.248377 CAGGTACGTACGCACTAGGC 60.248 60.000 16.72 0.00 39.90 3.93
1140 1158 0.677731 AGGTACGTACGCACTAGGCA 60.678 55.000 16.72 0.00 45.17 4.75
1141 1159 0.248377 GGTACGTACGCACTAGGCAG 60.248 60.000 16.72 0.00 45.17 4.85
1142 1160 0.864797 GTACGTACGCACTAGGCAGC 60.865 60.000 16.72 0.00 45.17 5.25
1143 1161 1.307355 TACGTACGCACTAGGCAGCA 61.307 55.000 16.72 0.00 45.17 4.41
1144 1162 1.226974 CGTACGCACTAGGCAGCAT 60.227 57.895 0.52 0.00 45.17 3.79
1145 1163 0.030235 CGTACGCACTAGGCAGCATA 59.970 55.000 0.52 0.00 45.17 3.14
1146 1164 1.335964 CGTACGCACTAGGCAGCATAT 60.336 52.381 0.52 0.00 45.17 1.78
1147 1165 2.329379 GTACGCACTAGGCAGCATATC 58.671 52.381 0.00 0.00 45.17 1.63
1148 1166 1.043816 ACGCACTAGGCAGCATATCT 58.956 50.000 0.00 0.00 45.17 1.98
1149 1167 1.000283 ACGCACTAGGCAGCATATCTC 60.000 52.381 0.00 0.00 45.17 2.75
1150 1168 1.271934 CGCACTAGGCAGCATATCTCT 59.728 52.381 0.00 0.00 45.17 3.10
1151 1169 2.686235 GCACTAGGCAGCATATCTCTG 58.314 52.381 0.00 0.00 43.97 3.35
1155 1174 2.634815 AGGCAGCATATCTCTGTTGG 57.365 50.000 0.00 0.00 34.21 3.77
1162 1181 4.334759 CAGCATATCTCTGTTGGTTTCTGG 59.665 45.833 0.00 0.00 0.00 3.86
1164 1183 4.574013 GCATATCTCTGTTGGTTTCTGGAG 59.426 45.833 0.00 0.00 0.00 3.86
1166 1185 1.768275 TCTCTGTTGGTTTCTGGAGCA 59.232 47.619 0.00 0.00 0.00 4.26
1174 1211 1.377202 TTTCTGGAGCATGTCGGCC 60.377 57.895 0.00 0.00 0.00 6.13
1187 1224 3.803082 CGGCCGGCAGTGTGATTG 61.803 66.667 30.85 1.52 0.00 2.67
1189 1226 1.750399 GGCCGGCAGTGTGATTGAT 60.750 57.895 30.85 0.00 0.00 2.57
1190 1227 1.718757 GGCCGGCAGTGTGATTGATC 61.719 60.000 30.85 0.98 0.00 2.92
1193 1230 0.926155 CGGCAGTGTGATTGATCGAG 59.074 55.000 0.00 0.00 0.00 4.04
1196 1233 0.926155 CAGTGTGATTGATCGAGCGG 59.074 55.000 0.00 0.00 0.00 5.52
1197 1234 0.532573 AGTGTGATTGATCGAGCGGT 59.467 50.000 0.00 0.00 0.00 5.68
1198 1235 0.647410 GTGTGATTGATCGAGCGGTG 59.353 55.000 0.00 0.00 0.00 4.94
1201 1238 0.179111 TGATTGATCGAGCGGTGGTC 60.179 55.000 0.00 0.00 0.00 4.02
1214 1262 1.485032 GGTGGTCGTGACGTGTGTTC 61.485 60.000 4.40 0.00 0.00 3.18
1365 1413 1.516386 CCACTTCATCGACGTCCCG 60.516 63.158 10.58 0.00 0.00 5.14
1459 1525 0.596082 ACCGCAGCAAAATGGTGTAC 59.404 50.000 10.78 0.00 46.67 2.90
1468 1534 6.088824 CAGCAAAATGGTGTACTGATCTTTC 58.911 40.000 1.55 0.00 40.68 2.62
1478 1544 1.550976 ACTGATCTTTCCACCGGTCTC 59.449 52.381 2.59 0.00 0.00 3.36
1487 1555 0.884704 CCACCGGTCTCTGTTGTTGG 60.885 60.000 2.59 0.00 0.00 3.77
1488 1556 0.179056 CACCGGTCTCTGTTGTTGGT 60.179 55.000 2.59 0.00 0.00 3.67
1557 1625 0.179225 GCGCCATCAACAACTACACG 60.179 55.000 0.00 0.00 0.00 4.49
1627 1707 2.752354 TCTTCCGGCCAATGTAATGTTG 59.248 45.455 2.24 0.00 0.00 3.33
1648 1728 6.307077 TGTTGAGTTAGATCATACAAACGTCG 59.693 38.462 0.00 0.00 0.00 5.12
1665 1751 2.695359 GTCGGCACATCTCTTTTGGTA 58.305 47.619 0.00 0.00 0.00 3.25
1793 1905 2.755469 CAGACCCCAATTGCCCGG 60.755 66.667 0.00 0.00 0.00 5.73
1949 2068 2.093658 CGTACTCCACCATGTAAGCCTT 60.094 50.000 0.00 0.00 0.00 4.35
1963 2085 3.838244 AAGCCTTGTGTAGTTCAGACA 57.162 42.857 0.00 0.00 0.00 3.41
1966 2175 3.324846 AGCCTTGTGTAGTTCAGACATCA 59.675 43.478 0.00 0.00 29.15 3.07
1970 2179 5.279206 CCTTGTGTAGTTCAGACATCAGACT 60.279 44.000 0.00 0.00 29.15 3.24
1971 2180 5.126396 TGTGTAGTTCAGACATCAGACTG 57.874 43.478 0.00 0.00 38.61 3.51
1986 2195 4.873817 TCAGACTGAAAAATGTGGCAATG 58.126 39.130 1.64 0.00 0.00 2.82
1989 2198 5.347635 CAGACTGAAAAATGTGGCAATGATG 59.652 40.000 0.00 0.00 0.00 3.07
2003 2212 2.991190 CAATGATGCTGAAACTTGTGCC 59.009 45.455 0.00 0.00 0.00 5.01
2004 2213 1.985473 TGATGCTGAAACTTGTGCCT 58.015 45.000 0.00 0.00 0.00 4.75
2009 2218 1.136891 GCTGAAACTTGTGCCTTGGTT 59.863 47.619 0.00 0.00 0.00 3.67
2010 2219 2.813061 CTGAAACTTGTGCCTTGGTTG 58.187 47.619 0.00 0.00 0.00 3.77
2013 2222 3.764434 TGAAACTTGTGCCTTGGTTGTTA 59.236 39.130 0.00 0.00 0.00 2.41
2027 2236 6.882140 CCTTGGTTGTTATATGTTGTCAGGTA 59.118 38.462 0.00 0.00 0.00 3.08
2144 2410 6.016693 TGCGGAATTGTTCTGAAGATTGTTTA 60.017 34.615 2.82 0.00 38.34 2.01
2145 2411 7.029563 GCGGAATTGTTCTGAAGATTGTTTAT 58.970 34.615 2.82 0.00 38.34 1.40
2146 2412 7.542130 GCGGAATTGTTCTGAAGATTGTTTATT 59.458 33.333 2.82 0.00 38.34 1.40
2147 2413 9.065871 CGGAATTGTTCTGAAGATTGTTTATTC 57.934 33.333 4.27 2.58 38.34 1.75
2148 2414 9.065871 GGAATTGTTCTGAAGATTGTTTATTCG 57.934 33.333 4.27 0.00 0.00 3.34
2149 2415 9.612620 GAATTGTTCTGAAGATTGTTTATTCGT 57.387 29.630 4.27 0.00 0.00 3.85
2189 2455 3.157087 ACAGTGGCTGGTAAATTTCTGG 58.843 45.455 0.00 0.00 35.51 3.86
2212 2478 4.785511 ACTGTAGTAACTGACGCTGATT 57.214 40.909 0.00 0.00 0.00 2.57
2215 2481 4.482386 TGTAGTAACTGACGCTGATTGAC 58.518 43.478 0.00 0.00 0.00 3.18
2275 2541 2.125350 GGAGGAGTGCGCCAAGAG 60.125 66.667 4.18 0.00 0.00 2.85
2302 2568 2.380410 CGTGCCCTGACAAGTACGC 61.380 63.158 3.48 0.00 0.00 4.42
2303 2569 1.301401 GTGCCCTGACAAGTACGCA 60.301 57.895 0.00 0.00 0.00 5.24
2304 2570 0.673644 GTGCCCTGACAAGTACGCAT 60.674 55.000 0.00 0.00 0.00 4.73
2305 2571 0.673333 TGCCCTGACAAGTACGCATG 60.673 55.000 0.00 0.00 0.00 4.06
2306 2572 1.982073 GCCCTGACAAGTACGCATGC 61.982 60.000 7.91 7.91 0.00 4.06
2307 2573 0.673333 CCCTGACAAGTACGCATGCA 60.673 55.000 19.57 0.00 0.00 3.96
2308 2574 0.723414 CCTGACAAGTACGCATGCAG 59.277 55.000 19.57 12.98 0.00 4.41
2309 2575 0.095935 CTGACAAGTACGCATGCAGC 59.904 55.000 19.57 6.77 40.87 5.25
2396 2669 5.006358 CGGTTGTGTATAATTAGGAGTGTGC 59.994 44.000 0.00 0.00 0.00 4.57
2400 2673 7.987750 TGTGTATAATTAGGAGTGTGCAAAA 57.012 32.000 0.00 0.00 0.00 2.44
2401 2674 8.574251 TGTGTATAATTAGGAGTGTGCAAAAT 57.426 30.769 0.00 0.00 0.00 1.82
2402 2675 8.458052 TGTGTATAATTAGGAGTGTGCAAAATG 58.542 33.333 0.00 0.00 0.00 2.32
2403 2676 8.458843 GTGTATAATTAGGAGTGTGCAAAATGT 58.541 33.333 0.00 0.00 0.00 2.71
2405 2678 9.855021 GTATAATTAGGAGTGTGCAAAATGTTT 57.145 29.630 0.00 0.00 0.00 2.83
2407 2680 9.855021 ATAATTAGGAGTGTGCAAAATGTTTAC 57.145 29.630 0.00 0.00 0.00 2.01
2409 2682 5.852282 AGGAGTGTGCAAAATGTTTACTT 57.148 34.783 0.00 0.00 0.00 2.24
2410 2683 6.952773 AGGAGTGTGCAAAATGTTTACTTA 57.047 33.333 0.00 0.00 0.00 2.24
2411 2684 7.524717 AGGAGTGTGCAAAATGTTTACTTAT 57.475 32.000 0.00 0.00 0.00 1.73
2413 2686 6.586082 GGAGTGTGCAAAATGTTTACTTATGG 59.414 38.462 0.00 0.00 0.00 2.74
2414 2687 5.925969 AGTGTGCAAAATGTTTACTTATGGC 59.074 36.000 0.00 0.00 0.00 4.40
2416 2689 4.629634 GTGCAAAATGTTTACTTATGGCCC 59.370 41.667 0.00 0.00 0.00 5.80
2432 2716 8.179487 ACTTATGGCCCAGATTATTATTCCATT 58.821 33.333 0.00 0.00 35.08 3.16
2457 2741 1.781429 CGCATTTAGTCGTCTGATCGG 59.219 52.381 0.00 0.00 0.00 4.18
2574 2871 6.993308 TGGTATGTGTGTCTGCTTAAACTAAA 59.007 34.615 0.00 0.00 0.00 1.85
2577 2874 9.543018 GTATGTGTGTCTGCTTAAACTAAAATC 57.457 33.333 0.00 0.00 0.00 2.17
2607 2906 3.737850 GACCATCATCTCCTGATTGGTC 58.262 50.000 11.66 11.66 45.11 4.02
2610 2909 3.388308 CATCATCTCCTGATTGGTCGAC 58.612 50.000 7.13 7.13 42.07 4.20
2620 2921 4.498850 CCTGATTGGTCGACTGATAGAGTG 60.499 50.000 16.46 0.00 33.83 3.51
2623 2929 2.366533 TGGTCGACTGATAGAGTGACC 58.633 52.381 16.46 12.65 44.74 4.02
2639 2945 4.579869 AGTGACCAAATGACCACTGTATC 58.420 43.478 0.00 0.00 38.32 2.24
2644 2950 4.202461 ACCAAATGACCACTGTATCTGTGT 60.202 41.667 6.16 0.00 32.65 3.72
2646 2952 4.623932 AATGACCACTGTATCTGTGTGT 57.376 40.909 6.16 4.28 32.65 3.72
2648 2954 4.415881 TGACCACTGTATCTGTGTGTTT 57.584 40.909 6.16 0.00 32.65 2.83
2653 2959 4.449068 CCACTGTATCTGTGTGTTTCAGAC 59.551 45.833 0.00 0.00 43.32 3.51
2655 2961 3.057019 TGTATCTGTGTGTTTCAGACGC 58.943 45.455 0.00 0.00 43.32 5.19
2743 3049 2.017049 ACGCTCAACAGGATATTTGGC 58.983 47.619 0.00 0.00 0.00 4.52
2744 3050 2.292267 CGCTCAACAGGATATTTGGCT 58.708 47.619 0.00 0.00 0.00 4.75
2749 3055 5.334414 GCTCAACAGGATATTTGGCTAATCG 60.334 44.000 0.00 0.00 0.00 3.34
2766 3072 6.651225 GGCTAATCGAAGGCTTAGTGATTATT 59.349 38.462 20.29 10.86 38.92 1.40
2767 3073 7.817962 GGCTAATCGAAGGCTTAGTGATTATTA 59.182 37.037 20.29 11.27 38.92 0.98
2768 3074 8.648968 GCTAATCGAAGGCTTAGTGATTATTAC 58.351 37.037 20.29 13.50 32.76 1.89
2791 3097 4.778842 ATGTCGCTTTTTATAGACTGCG 57.221 40.909 0.00 0.00 43.95 5.18
2861 7636 7.750458 GCTGTTCATTTTTCTATCGAAATGTCA 59.250 33.333 5.44 5.83 41.61 3.58
2875 7654 6.367421 TCGAAATGTCAAAATAAAGTGGACG 58.633 36.000 0.00 0.00 0.00 4.79
2900 7679 0.541764 TGGGCCAACTGGAAATGGAC 60.542 55.000 2.13 0.00 44.52 4.02
2930 7734 4.307432 ACTACATGTGAAGACGGTCTTTG 58.693 43.478 23.17 18.78 36.73 2.77
2931 7735 2.494059 ACATGTGAAGACGGTCTTTGG 58.506 47.619 23.17 13.53 36.73 3.28
2941 7745 2.934553 GACGGTCTTTGGCAACTATACC 59.065 50.000 0.00 4.46 37.61 2.73
2942 7746 2.285977 CGGTCTTTGGCAACTATACCC 58.714 52.381 0.00 0.00 37.61 3.69
2948 7752 0.988063 TGGCAACTATACCCTGTGCA 59.012 50.000 0.00 0.00 37.61 4.57
2954 7758 4.452455 GCAACTATACCCTGTGCATATGTC 59.548 45.833 4.29 0.00 0.00 3.06
2955 7759 5.610398 CAACTATACCCTGTGCATATGTCA 58.390 41.667 4.29 3.83 0.00 3.58
2963 7767 2.980233 GCATATGTCAGGCCGGGC 60.980 66.667 22.67 22.67 0.00 6.13
2984 8024 4.388499 GCTTCGGTCCGGGCTGAA 62.388 66.667 27.94 27.94 33.25 3.02
2985 8025 2.345991 CTTCGGTCCGGGCTGAAA 59.654 61.111 29.23 14.41 33.83 2.69
2990 9111 2.040939 TCGGTCCGGGCTGAAAATATA 58.959 47.619 17.13 0.00 0.00 0.86
3064 9185 6.975197 GCTTTGGTTAGATTTAGAGGCAAATC 59.025 38.462 1.62 1.62 42.67 2.17
3065 9186 7.362920 GCTTTGGTTAGATTTAGAGGCAAATCA 60.363 37.037 10.32 0.00 44.09 2.57
3066 9187 7.630242 TTGGTTAGATTTAGAGGCAAATCAG 57.370 36.000 10.32 0.00 44.09 2.90
3068 9189 6.122964 GGTTAGATTTAGAGGCAAATCAGGT 58.877 40.000 10.32 0.00 44.09 4.00
3116 9238 5.412904 GTGGCAAGATAAAACTCAAGTAGCT 59.587 40.000 0.00 0.00 0.00 3.32
3137 9259 9.118236 GTAGCTTACTTTTCATTGAACACAATC 57.882 33.333 0.00 0.00 32.76 2.67
3290 9412 9.823647 ACATATATTTAGTGAGGAAGTGAGTTG 57.176 33.333 0.00 0.00 0.00 3.16
3308 9430 5.938125 TGAGTTGTAGGAGGTAAAAATGCTC 59.062 40.000 0.00 0.00 0.00 4.26
3351 9473 8.133024 ACCATTTATTCTTATTCTTTGTGCCA 57.867 30.769 0.00 0.00 0.00 4.92
3372 9494 2.717639 TAGCTTGCTGGAAGGAATCC 57.282 50.000 10.99 0.00 45.60 3.01
3397 9519 4.590850 AACCTGGAAGTGAAAAATGCTC 57.409 40.909 0.00 0.00 0.00 4.26
3411 9533 3.775654 GCTCCCACCGTCTGAGGG 61.776 72.222 14.51 14.51 44.22 4.30
3430 9552 3.073062 AGGGGATCAATTGAGGAATACCG 59.927 47.826 14.54 0.00 41.83 4.02
3446 9568 1.374758 CCGTGCAAGGAGACCACTC 60.375 63.158 14.14 0.00 41.94 3.51
3453 9575 1.974236 CAAGGAGACCACTCTGGAAGT 59.026 52.381 0.00 0.00 40.96 3.01
3487 10054 3.316029 CCAACTGAGCTGTTGTGATTGAA 59.684 43.478 13.98 0.00 44.01 2.69
3504 10071 6.655003 GTGATTGAATCCTTGACTGGTAAGAA 59.345 38.462 2.26 0.00 0.00 2.52
3509 10076 5.825593 ATCCTTGACTGGTAAGAAGTGAA 57.174 39.130 0.00 0.00 0.00 3.18
3547 10114 7.660617 AGCTTATCAATGACCATGAAGATAGTG 59.339 37.037 0.00 0.00 0.00 2.74
3595 10682 4.647564 ACCAGTGACAAAATCCATCTCT 57.352 40.909 0.00 0.00 0.00 3.10
3603 10690 7.714377 AGTGACAAAATCCATCTCTATGTGATC 59.286 37.037 0.00 0.00 0.00 2.92
3642 10729 1.435168 AGGGAGAGGTTGAAGGAGTCT 59.565 52.381 0.00 0.00 0.00 3.24
3662 10852 0.037447 TGCCGGATGATGGTGTTTCA 59.963 50.000 5.05 0.00 0.00 2.69
3673 10863 4.999311 TGATGGTGTTTCATCTTCACTCTG 59.001 41.667 6.43 0.00 42.82 3.35
3677 10867 1.734465 GTTTCATCTTCACTCTGCGGG 59.266 52.381 0.00 0.00 0.00 6.13
3714 10904 3.807553 TGACAAACTGAGCAATCTCACA 58.192 40.909 0.00 0.00 43.95 3.58
3737 10927 4.819105 TTCATACGAGTCCACCAGAAAT 57.181 40.909 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.667448 GCGGGATTCTGAAAAACGAACC 60.667 50.000 12.82 0.00 0.00 3.62
1 2 2.581637 GCGGGATTCTGAAAAACGAAC 58.418 47.619 12.82 0.00 0.00 3.95
2 3 1.538075 GGCGGGATTCTGAAAAACGAA 59.462 47.619 12.82 0.00 0.00 3.85
3 4 1.161843 GGCGGGATTCTGAAAAACGA 58.838 50.000 12.82 0.00 0.00 3.85
4 5 0.170339 GGGCGGGATTCTGAAAAACG 59.830 55.000 0.00 0.58 0.00 3.60
5 6 0.170339 CGGGCGGGATTCTGAAAAAC 59.830 55.000 0.00 0.00 0.00 2.43
6 7 0.963355 CCGGGCGGGATTCTGAAAAA 60.963 55.000 4.88 0.00 38.47 1.94
7 8 1.377987 CCGGGCGGGATTCTGAAAA 60.378 57.895 4.88 0.00 38.47 2.29
8 9 2.132089 AACCGGGCGGGATTCTGAAA 62.132 55.000 18.95 0.00 39.97 2.69
9 10 2.132089 AAACCGGGCGGGATTCTGAA 62.132 55.000 18.95 0.00 39.97 3.02
10 11 2.132089 AAAACCGGGCGGGATTCTGA 62.132 55.000 18.95 0.00 39.97 3.27
11 12 1.677633 AAAACCGGGCGGGATTCTG 60.678 57.895 18.95 0.00 39.97 3.02
12 13 1.677633 CAAAACCGGGCGGGATTCT 60.678 57.895 18.95 1.07 39.97 2.40
13 14 2.706834 CCAAAACCGGGCGGGATTC 61.707 63.158 18.95 0.00 39.97 2.52
14 15 2.678580 CCAAAACCGGGCGGGATT 60.679 61.111 18.95 9.60 39.97 3.01
15 16 4.751820 CCCAAAACCGGGCGGGAT 62.752 66.667 18.95 2.45 41.62 3.85
17 18 4.978705 TTCCCAAAACCGGGCGGG 62.979 66.667 6.32 9.88 46.92 6.13
18 19 2.678580 ATTCCCAAAACCGGGCGG 60.679 61.111 6.32 0.00 46.92 6.13
19 20 1.248101 AAGATTCCCAAAACCGGGCG 61.248 55.000 6.32 0.00 46.92 6.13
20 21 0.530744 GAAGATTCCCAAAACCGGGC 59.469 55.000 6.32 0.00 46.92 6.13
22 23 4.064619 TTCTGGAAGATTCCCAAAACCGG 61.065 47.826 9.10 0.00 46.36 5.28
23 24 3.153919 TTCTGGAAGATTCCCAAAACCG 58.846 45.455 9.10 0.00 46.36 4.44
24 25 3.056536 GCTTCTGGAAGATTCCCAAAACC 60.057 47.826 13.74 0.00 46.36 3.27
25 26 3.829026 AGCTTCTGGAAGATTCCCAAAAC 59.171 43.478 13.74 0.00 46.36 2.43
26 27 4.118168 AGCTTCTGGAAGATTCCCAAAA 57.882 40.909 13.74 0.74 46.36 2.44
27 28 3.814504 AGCTTCTGGAAGATTCCCAAA 57.185 42.857 13.74 2.98 46.36 3.28
28 29 3.814504 AAGCTTCTGGAAGATTCCCAA 57.185 42.857 13.74 1.74 46.36 4.12
33 34 3.075134 AGTTGGGAAGCTTCTGGAAGATT 59.925 43.478 25.05 12.69 46.36 2.40
34 35 2.646798 AGTTGGGAAGCTTCTGGAAGAT 59.353 45.455 25.05 4.94 46.36 2.40
35 36 2.039084 GAGTTGGGAAGCTTCTGGAAGA 59.961 50.000 25.05 4.24 44.68 2.87
36 37 2.431454 GAGTTGGGAAGCTTCTGGAAG 58.569 52.381 25.05 6.02 41.24 3.46
37 38 1.270839 CGAGTTGGGAAGCTTCTGGAA 60.271 52.381 25.05 12.71 0.00 3.53
38 39 0.321671 CGAGTTGGGAAGCTTCTGGA 59.678 55.000 25.05 8.97 0.00 3.86
39 40 1.301677 GCGAGTTGGGAAGCTTCTGG 61.302 60.000 25.05 8.20 0.00 3.86
40 41 1.630244 CGCGAGTTGGGAAGCTTCTG 61.630 60.000 25.05 8.38 0.00 3.02
41 42 1.374758 CGCGAGTTGGGAAGCTTCT 60.375 57.895 25.05 5.60 0.00 2.85
42 43 1.374252 TCGCGAGTTGGGAAGCTTC 60.374 57.895 18.54 18.54 36.47 3.86
43 44 1.668151 GTCGCGAGTTGGGAAGCTT 60.668 57.895 10.24 0.00 41.74 3.74
44 45 2.048127 GTCGCGAGTTGGGAAGCT 60.048 61.111 10.24 0.00 41.74 3.74
45 46 2.357034 TGTCGCGAGTTGGGAAGC 60.357 61.111 10.24 0.00 41.74 3.86
46 47 2.027625 GGTGTCGCGAGTTGGGAAG 61.028 63.158 10.24 0.00 41.74 3.46
47 48 2.029964 GGTGTCGCGAGTTGGGAA 59.970 61.111 10.24 0.00 41.74 3.97
48 49 2.915659 AGGTGTCGCGAGTTGGGA 60.916 61.111 10.24 0.00 37.17 4.37
49 50 2.432628 GAGGTGTCGCGAGTTGGG 60.433 66.667 10.24 0.00 0.00 4.12
50 51 2.805353 CGAGGTGTCGCGAGTTGG 60.805 66.667 10.24 0.00 39.88 3.77
51 52 2.081212 GTCGAGGTGTCGCGAGTTG 61.081 63.158 10.24 0.00 45.12 3.16
52 53 2.254651 GTCGAGGTGTCGCGAGTT 59.745 61.111 10.24 0.00 45.12 3.01
53 54 4.086178 CGTCGAGGTGTCGCGAGT 62.086 66.667 10.24 0.00 45.12 4.18
59 60 4.736896 GGGTGGCGTCGAGGTGTC 62.737 72.222 7.01 0.00 0.00 3.67
61 62 3.934391 GAAGGGTGGCGTCGAGGTG 62.934 68.421 7.01 0.00 0.00 4.00
62 63 3.692406 GAAGGGTGGCGTCGAGGT 61.692 66.667 7.01 0.00 0.00 3.85
63 64 3.358076 GAGAAGGGTGGCGTCGAGG 62.358 68.421 0.00 0.00 0.00 4.63
64 65 2.182030 GAGAAGGGTGGCGTCGAG 59.818 66.667 0.00 0.00 0.00 4.04
65 66 3.379445 GGAGAAGGGTGGCGTCGA 61.379 66.667 0.00 0.00 0.00 4.20
66 67 4.452733 GGGAGAAGGGTGGCGTCG 62.453 72.222 0.00 0.00 0.00 5.12
67 68 4.097361 GGGGAGAAGGGTGGCGTC 62.097 72.222 0.00 0.00 0.00 5.19
68 69 4.974438 TGGGGAGAAGGGTGGCGT 62.974 66.667 0.00 0.00 0.00 5.68
69 70 3.628646 CTTGGGGAGAAGGGTGGCG 62.629 68.421 0.00 0.00 0.00 5.69
70 71 2.356667 CTTGGGGAGAAGGGTGGC 59.643 66.667 0.00 0.00 0.00 5.01
71 72 2.356667 GCTTGGGGAGAAGGGTGG 59.643 66.667 0.00 0.00 0.00 4.61
72 73 2.045926 CGCTTGGGGAGAAGGGTG 60.046 66.667 0.00 0.00 32.60 4.61
73 74 4.035102 GCGCTTGGGGAGAAGGGT 62.035 66.667 0.00 0.00 38.00 4.34
75 76 3.014085 TACGCGCTTGGGGAGAAGG 62.014 63.158 5.73 0.00 0.00 3.46
76 77 1.810030 GTACGCGCTTGGGGAGAAG 60.810 63.158 5.73 0.00 0.00 2.85
77 78 2.263540 GTACGCGCTTGGGGAGAA 59.736 61.111 5.73 0.00 0.00 2.87
78 79 3.766691 GGTACGCGCTTGGGGAGA 61.767 66.667 5.73 0.00 0.00 3.71
79 80 4.077184 TGGTACGCGCTTGGGGAG 62.077 66.667 5.73 0.00 0.00 4.30
80 81 4.382320 GTGGTACGCGCTTGGGGA 62.382 66.667 5.73 0.00 0.00 4.81
99 100 2.925262 CGAGCTCATAGCCGAGGGG 61.925 68.421 15.40 0.00 43.77 4.79
100 101 2.647875 CGAGCTCATAGCCGAGGG 59.352 66.667 15.40 0.00 43.77 4.30
101 102 2.647875 CCGAGCTCATAGCCGAGG 59.352 66.667 15.40 0.00 43.77 4.63
102 103 2.049618 GCCGAGCTCATAGCCGAG 60.050 66.667 15.40 0.00 43.77 4.63
103 104 2.833121 TGCCGAGCTCATAGCCGA 60.833 61.111 15.40 0.00 43.77 5.54
104 105 2.355445 TTCTGCCGAGCTCATAGCCG 62.355 60.000 15.40 9.71 43.77 5.52
105 106 0.599728 CTTCTGCCGAGCTCATAGCC 60.600 60.000 15.40 0.00 43.77 3.93
106 107 1.220817 GCTTCTGCCGAGCTCATAGC 61.221 60.000 15.40 13.59 42.84 2.97
107 108 2.897780 GCTTCTGCCGAGCTCATAG 58.102 57.895 15.40 8.44 37.18 2.23
118 119 3.267860 CTCGATGGCGGCTTCTGC 61.268 66.667 20.27 0.00 38.28 4.26
119 120 1.880340 GTCTCGATGGCGGCTTCTG 60.880 63.158 20.27 14.32 38.28 3.02
120 121 2.496817 GTCTCGATGGCGGCTTCT 59.503 61.111 20.27 1.31 38.28 2.85
121 122 2.956964 CGTCTCGATGGCGGCTTC 60.957 66.667 11.43 12.96 40.56 3.86
122 123 3.449227 TCGTCTCGATGGCGGCTT 61.449 61.111 11.43 3.03 44.97 4.35
123 124 4.194720 GTCGTCTCGATGGCGGCT 62.195 66.667 11.43 0.00 45.90 5.52
125 126 4.570663 GGGTCGTCTCGATGGCGG 62.571 72.222 8.59 0.00 44.97 6.13
126 127 4.570663 GGGGTCGTCTCGATGGCG 62.571 72.222 3.01 3.01 46.47 5.69
127 128 4.570663 CGGGGTCGTCTCGATGGC 62.571 72.222 0.00 0.00 38.42 4.40
128 129 2.827190 TCGGGGTCGTCTCGATGG 60.827 66.667 0.00 0.00 38.42 3.51
129 130 2.408022 GTCGGGGTCGTCTCGATG 59.592 66.667 6.75 0.00 38.42 3.84
130 131 2.827642 GGTCGGGGTCGTCTCGAT 60.828 66.667 6.75 0.00 38.42 3.59
131 132 4.334118 TGGTCGGGGTCGTCTCGA 62.334 66.667 0.00 0.00 37.69 4.04
132 133 4.112341 GTGGTCGGGGTCGTCTCG 62.112 72.222 0.00 0.00 37.69 4.04
133 134 3.756727 GGTGGTCGGGGTCGTCTC 61.757 72.222 0.00 0.00 37.69 3.36
134 135 4.608774 TGGTGGTCGGGGTCGTCT 62.609 66.667 0.00 0.00 37.69 4.18
135 136 4.368543 GTGGTGGTCGGGGTCGTC 62.369 72.222 0.00 0.00 37.69 4.20
163 164 4.087892 CTGGCCTCTCCACGGTGG 62.088 72.222 21.27 21.27 40.72 4.61
164 165 4.767255 GCTGGCCTCTCCACGGTG 62.767 72.222 3.32 0.00 40.72 4.94
177 178 4.457496 ATCCGTCACTGGCGCTGG 62.457 66.667 7.64 2.58 0.00 4.85
178 179 3.190849 CATCCGTCACTGGCGCTG 61.191 66.667 7.64 2.99 0.00 5.18
179 180 3.362399 CTCATCCGTCACTGGCGCT 62.362 63.158 7.64 0.00 0.00 5.92
180 181 2.887568 CTCATCCGTCACTGGCGC 60.888 66.667 0.00 0.00 0.00 6.53
181 182 1.226802 CTCTCATCCGTCACTGGCG 60.227 63.158 0.00 0.00 0.00 5.69
182 183 1.142748 CCTCTCATCCGTCACTGGC 59.857 63.158 0.00 0.00 0.00 4.85
183 184 0.743688 CTCCTCTCATCCGTCACTGG 59.256 60.000 0.00 0.00 0.00 4.00
184 185 0.743688 CCTCCTCTCATCCGTCACTG 59.256 60.000 0.00 0.00 0.00 3.66
185 186 1.040339 GCCTCCTCTCATCCGTCACT 61.040 60.000 0.00 0.00 0.00 3.41
186 187 1.439644 GCCTCCTCTCATCCGTCAC 59.560 63.158 0.00 0.00 0.00 3.67
187 188 2.121538 CGCCTCCTCTCATCCGTCA 61.122 63.158 0.00 0.00 0.00 4.35
188 189 2.725008 CGCCTCCTCTCATCCGTC 59.275 66.667 0.00 0.00 0.00 4.79
189 190 3.532155 GCGCCTCCTCTCATCCGT 61.532 66.667 0.00 0.00 0.00 4.69
190 191 3.496875 CTGCGCCTCCTCTCATCCG 62.497 68.421 4.18 0.00 0.00 4.18
191 192 2.420890 CTGCGCCTCCTCTCATCC 59.579 66.667 4.18 0.00 0.00 3.51
192 193 2.420890 CCTGCGCCTCCTCTCATC 59.579 66.667 4.18 0.00 0.00 2.92
193 194 3.160047 CCCTGCGCCTCCTCTCAT 61.160 66.667 4.18 0.00 0.00 2.90
205 206 3.883549 GATGGCTCCCTCCCCTGC 61.884 72.222 0.00 0.00 0.00 4.85
206 207 3.554342 CGATGGCTCCCTCCCCTG 61.554 72.222 0.00 0.00 0.00 4.45
207 208 4.888325 CCGATGGCTCCCTCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
217 218 3.982372 TTCACGAGTCGCCGATGGC 62.982 63.158 13.59 0.00 46.75 4.40
218 219 1.874019 CTTCACGAGTCGCCGATGG 60.874 63.158 13.59 2.55 0.00 3.51
219 220 2.508891 GCTTCACGAGTCGCCGATG 61.509 63.158 13.59 12.44 0.00 3.84
220 221 2.202623 GCTTCACGAGTCGCCGAT 60.203 61.111 13.59 0.00 0.00 4.18
221 222 3.324099 GAGCTTCACGAGTCGCCGA 62.324 63.158 13.59 6.82 0.00 5.54
222 223 2.876645 GAGCTTCACGAGTCGCCG 60.877 66.667 13.59 4.12 0.00 6.46
223 224 2.507324 GGAGCTTCACGAGTCGCC 60.507 66.667 13.59 0.00 0.00 5.54
224 225 2.507324 GGGAGCTTCACGAGTCGC 60.507 66.667 13.59 0.00 0.00 5.19
225 226 2.182030 GGGGAGCTTCACGAGTCG 59.818 66.667 11.85 11.85 0.00 4.18
226 227 2.579738 GGGGGAGCTTCACGAGTC 59.420 66.667 0.00 0.00 0.00 3.36
279 280 2.041206 GAGGATAGGCAACGACCCCC 62.041 65.000 0.00 0.00 46.39 5.40
280 281 1.049289 AGAGGATAGGCAACGACCCC 61.049 60.000 0.00 0.00 46.39 4.95
281 282 0.389757 GAGAGGATAGGCAACGACCC 59.610 60.000 0.00 0.00 46.39 4.46
282 283 0.030908 CGAGAGGATAGGCAACGACC 59.969 60.000 0.00 0.00 46.39 4.79
283 284 1.002251 CTCGAGAGGATAGGCAACGAC 60.002 57.143 6.58 0.00 46.39 4.34
284 285 1.309950 CTCGAGAGGATAGGCAACGA 58.690 55.000 6.58 0.00 46.39 3.85
285 286 3.855630 CTCGAGAGGATAGGCAACG 57.144 57.895 6.58 0.00 46.39 4.10
295 296 1.967066 ACAAGGCATATCCTCGAGAGG 59.033 52.381 15.71 12.78 46.94 3.69
296 297 2.625314 TGACAAGGCATATCCTCGAGAG 59.375 50.000 15.71 4.11 46.94 3.20
297 298 2.666317 TGACAAGGCATATCCTCGAGA 58.334 47.619 15.71 0.00 46.94 4.04
298 299 3.674528 ATGACAAGGCATATCCTCGAG 57.325 47.619 5.13 5.13 46.94 4.04
299 300 3.244215 GGAATGACAAGGCATATCCTCGA 60.244 47.826 8.81 0.00 46.94 4.04
300 301 3.070018 GGAATGACAAGGCATATCCTCG 58.930 50.000 8.81 0.00 46.94 4.63
301 302 3.416156 GGGAATGACAAGGCATATCCTC 58.584 50.000 13.26 0.00 46.94 3.71
303 304 2.519013 GGGGAATGACAAGGCATATCC 58.481 52.381 7.97 7.97 0.00 2.59
304 305 2.519013 GGGGGAATGACAAGGCATATC 58.481 52.381 0.00 0.00 0.00 1.63
305 306 2.683211 GGGGGAATGACAAGGCATAT 57.317 50.000 0.00 0.00 0.00 1.78
327 328 7.228906 TCCATGTGTTGTTATAGAACGGAAAAA 59.771 33.333 0.00 0.00 38.51 1.94
328 329 6.711194 TCCATGTGTTGTTATAGAACGGAAAA 59.289 34.615 0.00 0.00 38.51 2.29
329 330 6.231951 TCCATGTGTTGTTATAGAACGGAAA 58.768 36.000 0.00 0.00 38.51 3.13
330 331 5.795972 TCCATGTGTTGTTATAGAACGGAA 58.204 37.500 0.00 0.00 38.51 4.30
331 332 5.408880 TCCATGTGTTGTTATAGAACGGA 57.591 39.130 0.00 0.00 38.51 4.69
332 333 7.962964 ATATCCATGTGTTGTTATAGAACGG 57.037 36.000 0.00 0.00 38.51 4.44
340 341 9.542462 GAGTAGCTAAATATCCATGTGTTGTTA 57.458 33.333 0.00 0.00 0.00 2.41
341 342 7.499232 GGAGTAGCTAAATATCCATGTGTTGTT 59.501 37.037 0.00 0.00 0.00 2.83
342 343 6.992715 GGAGTAGCTAAATATCCATGTGTTGT 59.007 38.462 0.00 0.00 0.00 3.32
343 344 6.428159 GGGAGTAGCTAAATATCCATGTGTTG 59.572 42.308 14.23 0.00 0.00 3.33
344 345 6.330250 AGGGAGTAGCTAAATATCCATGTGTT 59.670 38.462 14.23 0.00 0.00 3.32
345 346 5.846714 AGGGAGTAGCTAAATATCCATGTGT 59.153 40.000 14.23 0.00 0.00 3.72
346 347 6.365970 AGGGAGTAGCTAAATATCCATGTG 57.634 41.667 14.23 0.00 0.00 3.21
347 348 5.485708 GGAGGGAGTAGCTAAATATCCATGT 59.514 44.000 14.23 2.71 0.00 3.21
348 349 5.394663 CGGAGGGAGTAGCTAAATATCCATG 60.395 48.000 14.23 0.00 0.00 3.66
349 350 4.712337 CGGAGGGAGTAGCTAAATATCCAT 59.288 45.833 14.23 9.21 0.00 3.41
350 351 4.087182 CGGAGGGAGTAGCTAAATATCCA 58.913 47.826 14.23 0.00 0.00 3.41
351 352 4.342359 TCGGAGGGAGTAGCTAAATATCC 58.658 47.826 0.00 0.93 0.00 2.59
352 353 5.068067 GGATCGGAGGGAGTAGCTAAATATC 59.932 48.000 0.00 0.00 0.00 1.63
353 354 4.957327 GGATCGGAGGGAGTAGCTAAATAT 59.043 45.833 0.00 0.00 0.00 1.28
354 355 4.202641 TGGATCGGAGGGAGTAGCTAAATA 60.203 45.833 0.00 0.00 0.00 1.40
355 356 3.166679 GGATCGGAGGGAGTAGCTAAAT 58.833 50.000 0.00 0.00 0.00 1.40
356 357 2.091499 TGGATCGGAGGGAGTAGCTAAA 60.091 50.000 0.00 0.00 0.00 1.85
357 358 1.497716 TGGATCGGAGGGAGTAGCTAA 59.502 52.381 0.00 0.00 0.00 3.09
358 359 1.146452 TGGATCGGAGGGAGTAGCTA 58.854 55.000 0.00 0.00 0.00 3.32
359 360 0.468400 GTGGATCGGAGGGAGTAGCT 60.468 60.000 0.00 0.00 0.00 3.32
360 361 0.755698 TGTGGATCGGAGGGAGTAGC 60.756 60.000 0.00 0.00 0.00 3.58
361 362 1.683917 CTTGTGGATCGGAGGGAGTAG 59.316 57.143 0.00 0.00 0.00 2.57
362 363 1.006758 ACTTGTGGATCGGAGGGAGTA 59.993 52.381 0.00 0.00 0.00 2.59
363 364 0.252284 ACTTGTGGATCGGAGGGAGT 60.252 55.000 0.00 0.00 0.00 3.85
364 365 1.776662 TACTTGTGGATCGGAGGGAG 58.223 55.000 0.00 0.00 0.00 4.30
365 366 2.241281 TTACTTGTGGATCGGAGGGA 57.759 50.000 0.00 0.00 0.00 4.20
366 367 4.891992 ATATTACTTGTGGATCGGAGGG 57.108 45.455 0.00 0.00 0.00 4.30
367 368 6.591750 ACTATATTACTTGTGGATCGGAGG 57.408 41.667 0.00 0.00 0.00 4.30
407 408 8.597227 CGGATTATTTGTCGATGTTTTAGTACA 58.403 33.333 0.00 0.00 0.00 2.90
408 409 8.060090 CCGGATTATTTGTCGATGTTTTAGTAC 58.940 37.037 0.00 0.00 0.00 2.73
409 410 7.980662 TCCGGATTATTTGTCGATGTTTTAGTA 59.019 33.333 0.00 0.00 0.00 1.82
410 411 6.819649 TCCGGATTATTTGTCGATGTTTTAGT 59.180 34.615 0.00 0.00 0.00 2.24
411 412 7.241663 TCCGGATTATTTGTCGATGTTTTAG 57.758 36.000 0.00 0.00 0.00 1.85
412 413 7.496263 TCATCCGGATTATTTGTCGATGTTTTA 59.504 33.333 16.19 0.00 0.00 1.52
413 414 6.317642 TCATCCGGATTATTTGTCGATGTTTT 59.682 34.615 16.19 0.00 0.00 2.43
414 415 5.820423 TCATCCGGATTATTTGTCGATGTTT 59.180 36.000 16.19 0.00 0.00 2.83
415 416 5.236478 GTCATCCGGATTATTTGTCGATGTT 59.764 40.000 16.19 0.00 0.00 2.71
416 417 4.750098 GTCATCCGGATTATTTGTCGATGT 59.250 41.667 16.19 0.00 0.00 3.06
417 418 4.749598 TGTCATCCGGATTATTTGTCGATG 59.250 41.667 16.19 0.00 0.00 3.84
418 419 4.956085 TGTCATCCGGATTATTTGTCGAT 58.044 39.130 16.19 0.00 0.00 3.59
419 420 4.394439 TGTCATCCGGATTATTTGTCGA 57.606 40.909 16.19 3.18 0.00 4.20
420 421 4.083855 CCATGTCATCCGGATTATTTGTCG 60.084 45.833 16.19 0.32 0.00 4.35
421 422 5.063204 TCCATGTCATCCGGATTATTTGTC 58.937 41.667 16.19 3.07 0.00 3.18
422 423 5.047566 TCCATGTCATCCGGATTATTTGT 57.952 39.130 16.19 0.00 0.00 2.83
423 424 5.049198 CACTCCATGTCATCCGGATTATTTG 60.049 44.000 16.19 10.45 0.00 2.32
424 425 5.065914 CACTCCATGTCATCCGGATTATTT 58.934 41.667 16.19 0.00 0.00 1.40
425 426 4.505566 CCACTCCATGTCATCCGGATTATT 60.506 45.833 16.19 0.00 0.00 1.40
426 427 3.008375 CCACTCCATGTCATCCGGATTAT 59.992 47.826 16.19 7.00 0.00 1.28
427 428 2.368548 CCACTCCATGTCATCCGGATTA 59.631 50.000 16.19 3.57 0.00 1.75
428 429 1.141657 CCACTCCATGTCATCCGGATT 59.858 52.381 16.19 0.00 0.00 3.01
429 430 0.761187 CCACTCCATGTCATCCGGAT 59.239 55.000 12.38 12.38 0.00 4.18
430 431 0.617535 ACCACTCCATGTCATCCGGA 60.618 55.000 6.61 6.61 0.00 5.14
431 432 1.119684 TACCACTCCATGTCATCCGG 58.880 55.000 0.00 0.00 0.00 5.14
432 433 2.936498 GTTTACCACTCCATGTCATCCG 59.064 50.000 0.00 0.00 0.00 4.18
433 434 3.950397 TGTTTACCACTCCATGTCATCC 58.050 45.455 0.00 0.00 0.00 3.51
434 435 5.163622 CCATTGTTTACCACTCCATGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
435 436 4.706476 CCATTGTTTACCACTCCATGTCAT 59.294 41.667 0.00 0.00 0.00 3.06
436 437 4.078537 CCATTGTTTACCACTCCATGTCA 58.921 43.478 0.00 0.00 0.00 3.58
437 438 4.079253 ACCATTGTTTACCACTCCATGTC 58.921 43.478 0.00 0.00 0.00 3.06
438 439 4.112634 ACCATTGTTTACCACTCCATGT 57.887 40.909 0.00 0.00 0.00 3.21
439 440 4.096382 GCTACCATTGTTTACCACTCCATG 59.904 45.833 0.00 0.00 0.00 3.66
440 441 4.270008 GCTACCATTGTTTACCACTCCAT 58.730 43.478 0.00 0.00 0.00 3.41
441 442 3.560453 GGCTACCATTGTTTACCACTCCA 60.560 47.826 0.00 0.00 0.00 3.86
442 443 3.014623 GGCTACCATTGTTTACCACTCC 58.985 50.000 0.00 0.00 0.00 3.85
443 444 3.681593 TGGCTACCATTGTTTACCACTC 58.318 45.455 0.00 0.00 0.00 3.51
444 445 3.686016 CTGGCTACCATTGTTTACCACT 58.314 45.455 0.00 0.00 30.82 4.00
445 446 2.163613 GCTGGCTACCATTGTTTACCAC 59.836 50.000 0.00 0.00 30.82 4.16
446 447 2.442413 GCTGGCTACCATTGTTTACCA 58.558 47.619 0.00 0.00 30.82 3.25
447 448 1.400494 CGCTGGCTACCATTGTTTACC 59.600 52.381 0.00 0.00 30.82 2.85
448 449 2.352388 TCGCTGGCTACCATTGTTTAC 58.648 47.619 0.00 0.00 30.82 2.01
449 450 2.772077 TCGCTGGCTACCATTGTTTA 57.228 45.000 0.00 0.00 30.82 2.01
450 451 1.812571 CTTCGCTGGCTACCATTGTTT 59.187 47.619 0.00 0.00 30.82 2.83
451 452 1.453155 CTTCGCTGGCTACCATTGTT 58.547 50.000 0.00 0.00 30.82 2.83
452 453 1.026718 GCTTCGCTGGCTACCATTGT 61.027 55.000 0.00 0.00 30.82 2.71
453 454 1.026182 TGCTTCGCTGGCTACCATTG 61.026 55.000 0.00 0.00 30.82 2.82
454 455 0.322456 TTGCTTCGCTGGCTACCATT 60.322 50.000 0.00 0.00 30.82 3.16
455 456 0.322456 TTTGCTTCGCTGGCTACCAT 60.322 50.000 0.00 0.00 30.82 3.55
456 457 0.322456 ATTTGCTTCGCTGGCTACCA 60.322 50.000 0.00 0.00 0.00 3.25
457 458 1.663695 TATTTGCTTCGCTGGCTACC 58.336 50.000 0.00 0.00 0.00 3.18
458 459 3.971032 AATATTTGCTTCGCTGGCTAC 57.029 42.857 0.00 0.00 0.00 3.58
459 460 4.981806 AAAATATTTGCTTCGCTGGCTA 57.018 36.364 0.39 0.00 0.00 3.93
460 461 3.874392 AAAATATTTGCTTCGCTGGCT 57.126 38.095 0.39 0.00 0.00 4.75
461 462 4.044426 CCTAAAATATTTGCTTCGCTGGC 58.956 43.478 0.39 0.00 0.00 4.85
462 463 4.044426 GCCTAAAATATTTGCTTCGCTGG 58.956 43.478 0.39 0.00 0.00 4.85
463 464 3.725740 CGCCTAAAATATTTGCTTCGCTG 59.274 43.478 0.39 0.00 0.00 5.18
464 465 3.792124 GCGCCTAAAATATTTGCTTCGCT 60.792 43.478 20.80 2.54 36.46 4.93
465 466 2.467673 GCGCCTAAAATATTTGCTTCGC 59.532 45.455 16.57 16.57 0.00 4.70
466 467 2.713976 CGCGCCTAAAATATTTGCTTCG 59.286 45.455 0.00 5.34 0.00 3.79
467 468 2.467673 GCGCGCCTAAAATATTTGCTTC 59.532 45.455 23.24 0.00 0.00 3.86
475 476 2.096614 GCTTTATCGCGCGCCTAAAATA 60.097 45.455 27.95 13.91 0.00 1.40
484 485 2.621000 GGACAGCTTTATCGCGCG 59.379 61.111 26.76 26.76 34.40 6.86
486 487 3.309675 CGGGACAGCTTTATCGCG 58.690 61.111 0.00 0.00 43.46 5.87
487 488 0.743345 AACCGGGACAGCTTTATCGC 60.743 55.000 6.32 0.00 0.00 4.58
489 490 6.930667 TTTATTAACCGGGACAGCTTTATC 57.069 37.500 6.32 0.00 0.00 1.75
497 498 8.688151 CCAAAATAAGATTTATTAACCGGGACA 58.312 33.333 6.32 0.00 0.00 4.02
605 612 8.547173 AGCCGGTATATACTATCTTACAGTACT 58.453 37.037 12.54 0.00 31.53 2.73
606 613 8.729805 AGCCGGTATATACTATCTTACAGTAC 57.270 38.462 12.54 0.00 31.53 2.73
609 616 8.277490 TCAAGCCGGTATATACTATCTTACAG 57.723 38.462 12.54 3.24 0.00 2.74
611 618 8.189460 CCTTCAAGCCGGTATATACTATCTTAC 58.811 40.741 12.54 0.00 0.00 2.34
612 619 8.111545 TCCTTCAAGCCGGTATATACTATCTTA 58.888 37.037 12.54 0.43 0.00 2.10
613 620 6.952358 TCCTTCAAGCCGGTATATACTATCTT 59.048 38.462 12.54 9.63 0.00 2.40
615 622 6.680872 GCTCCTTCAAGCCGGTATATACTATC 60.681 46.154 12.54 2.51 36.22 2.08
617 624 4.461781 GCTCCTTCAAGCCGGTATATACTA 59.538 45.833 12.54 0.00 36.22 1.82
618 625 3.258622 GCTCCTTCAAGCCGGTATATACT 59.741 47.826 12.54 0.00 36.22 2.12
626 633 0.890683 ATTTTGCTCCTTCAAGCCGG 59.109 50.000 0.00 0.00 41.77 6.13
631 638 7.465379 CGTCGTCATTATATTTTGCTCCTTCAA 60.465 37.037 0.00 0.00 0.00 2.69
633 640 6.355638 CGTCGTCATTATATTTTGCTCCTTC 58.644 40.000 0.00 0.00 0.00 3.46
636 643 4.025229 TGCGTCGTCATTATATTTTGCTCC 60.025 41.667 0.00 0.00 0.00 4.70
646 653 1.069703 GCATGCATGCGTCGTCATTAT 60.070 47.619 33.99 0.00 44.67 1.28
678 685 1.457346 GTTTGTGAGCCAGATGGGAG 58.543 55.000 0.12 0.00 40.01 4.30
679 686 0.321564 CGTTTGTGAGCCAGATGGGA 60.322 55.000 0.12 0.00 40.01 4.37
683 690 1.070758 AGTGTCGTTTGTGAGCCAGAT 59.929 47.619 0.00 0.00 0.00 2.90
686 693 0.874175 CGAGTGTCGTTTGTGAGCCA 60.874 55.000 0.00 0.00 34.72 4.75
687 694 1.853319 CGAGTGTCGTTTGTGAGCC 59.147 57.895 0.00 0.00 34.72 4.70
705 716 4.645535 TCATACAGAAGCCCATAATCTGC 58.354 43.478 2.13 0.00 43.41 4.26
707 718 5.163301 ACGTTCATACAGAAGCCCATAATCT 60.163 40.000 0.00 0.00 36.78 2.40
708 719 5.050091 CACGTTCATACAGAAGCCCATAATC 60.050 44.000 0.00 0.00 36.78 1.75
721 732 0.248012 ATGCCGACCACGTTCATACA 59.752 50.000 0.00 0.00 37.88 2.29
809 820 1.999648 TATCCTGCCAATCAATGCCC 58.000 50.000 0.00 0.00 0.00 5.36
867 882 0.741221 CGGGAAAGGAAAGAGGAGCG 60.741 60.000 0.00 0.00 0.00 5.03
941 956 5.969423 GAGATGATGATGGATCTCTTCTCC 58.031 45.833 11.07 0.00 40.96 3.71
954 969 3.514706 CGGGGAGAATGAGAGATGATGAT 59.485 47.826 0.00 0.00 0.00 2.45
1111 1129 0.656786 GTACGTACCTGCGCGATCTC 60.657 60.000 12.10 0.00 34.88 2.75
1127 1145 2.029828 AGATATGCTGCCTAGTGCGTAC 60.030 50.000 0.00 0.00 45.60 3.67
1128 1146 2.229062 GAGATATGCTGCCTAGTGCGTA 59.771 50.000 0.00 4.70 45.60 4.42
1129 1147 1.000283 GAGATATGCTGCCTAGTGCGT 60.000 52.381 0.00 0.00 45.60 5.24
1130 1148 1.271934 AGAGATATGCTGCCTAGTGCG 59.728 52.381 0.00 0.00 45.60 5.34
1131 1149 2.036992 ACAGAGATATGCTGCCTAGTGC 59.963 50.000 0.00 0.00 36.86 4.40
1132 1150 4.056740 CAACAGAGATATGCTGCCTAGTG 58.943 47.826 0.00 0.00 36.86 2.74
1133 1151 3.070734 CCAACAGAGATATGCTGCCTAGT 59.929 47.826 0.00 0.00 36.86 2.57
1134 1152 3.070734 ACCAACAGAGATATGCTGCCTAG 59.929 47.826 0.00 0.00 36.86 3.02
1135 1153 3.041211 ACCAACAGAGATATGCTGCCTA 58.959 45.455 0.00 0.00 36.86 3.93
1136 1154 1.842562 ACCAACAGAGATATGCTGCCT 59.157 47.619 0.00 0.00 36.86 4.75
1137 1155 2.338577 ACCAACAGAGATATGCTGCC 57.661 50.000 0.00 0.00 36.86 4.85
1138 1156 3.944015 AGAAACCAACAGAGATATGCTGC 59.056 43.478 0.00 0.00 36.86 5.25
1139 1157 4.334759 CCAGAAACCAACAGAGATATGCTG 59.665 45.833 0.00 0.00 39.26 4.41
1140 1158 4.225942 TCCAGAAACCAACAGAGATATGCT 59.774 41.667 0.00 0.00 0.00 3.79
1141 1159 4.517285 TCCAGAAACCAACAGAGATATGC 58.483 43.478 0.00 0.00 0.00 3.14
1142 1160 4.574013 GCTCCAGAAACCAACAGAGATATG 59.426 45.833 0.00 0.00 0.00 1.78
1143 1161 4.225942 TGCTCCAGAAACCAACAGAGATAT 59.774 41.667 0.00 0.00 0.00 1.63
1144 1162 3.582647 TGCTCCAGAAACCAACAGAGATA 59.417 43.478 0.00 0.00 0.00 1.98
1145 1163 2.373169 TGCTCCAGAAACCAACAGAGAT 59.627 45.455 0.00 0.00 0.00 2.75
1146 1164 1.768275 TGCTCCAGAAACCAACAGAGA 59.232 47.619 0.00 0.00 0.00 3.10
1147 1165 2.260844 TGCTCCAGAAACCAACAGAG 57.739 50.000 0.00 0.00 0.00 3.35
1148 1166 2.158623 ACATGCTCCAGAAACCAACAGA 60.159 45.455 0.00 0.00 0.00 3.41
1149 1167 2.227388 GACATGCTCCAGAAACCAACAG 59.773 50.000 0.00 0.00 0.00 3.16
1150 1168 2.229792 GACATGCTCCAGAAACCAACA 58.770 47.619 0.00 0.00 0.00 3.33
1151 1169 1.197721 CGACATGCTCCAGAAACCAAC 59.802 52.381 0.00 0.00 0.00 3.77
1155 1174 1.648467 GGCCGACATGCTCCAGAAAC 61.648 60.000 0.00 0.00 0.00 2.78
1174 1211 0.926155 CTCGATCAATCACACTGCCG 59.074 55.000 0.00 0.00 0.00 5.69
1178 1215 0.532573 ACCGCTCGATCAATCACACT 59.467 50.000 0.00 0.00 0.00 3.55
1187 1224 2.579787 CACGACCACCGCTCGATC 60.580 66.667 0.00 0.00 43.32 3.69
1189 1226 4.034258 GTCACGACCACCGCTCGA 62.034 66.667 0.00 0.00 43.32 4.04
1193 1230 4.936823 ACACGTCACGACCACCGC 62.937 66.667 2.91 0.00 43.32 5.68
1196 1233 1.804273 CGAACACACGTCACGACCAC 61.804 60.000 2.91 0.00 0.00 4.16
1197 1234 1.586826 CGAACACACGTCACGACCA 60.587 57.895 2.91 0.00 0.00 4.02
1198 1235 2.924285 GCGAACACACGTCACGACC 61.924 63.158 2.91 0.00 35.59 4.79
1201 1238 2.539503 CTGCGAACACACGTCACG 59.460 61.111 0.00 0.00 35.59 4.35
1202 1239 2.594962 CCCTGCGAACACACGTCAC 61.595 63.158 0.00 0.00 35.59 3.67
1203 1240 2.279851 CCCTGCGAACACACGTCA 60.280 61.111 0.00 0.00 35.59 4.35
1204 1241 3.712881 GCCCTGCGAACACACGTC 61.713 66.667 0.00 0.00 35.59 4.34
1365 1413 2.059541 GAGTAGTTGCAGACGTTGTCC 58.940 52.381 0.00 0.00 32.18 4.02
1407 1455 4.748102 TCGAACAACAGAGTGTGGATTAAC 59.252 41.667 0.00 0.00 0.00 2.01
1410 1458 3.131396 GTCGAACAACAGAGTGTGGATT 58.869 45.455 0.00 0.00 0.00 3.01
1412 1460 1.754803 AGTCGAACAACAGAGTGTGGA 59.245 47.619 0.00 0.00 0.00 4.02
1456 1522 2.496470 AGACCGGTGGAAAGATCAGTAC 59.504 50.000 14.63 0.00 0.00 2.73
1459 1525 1.827969 AGAGACCGGTGGAAAGATCAG 59.172 52.381 14.63 0.00 0.00 2.90
1468 1534 0.884704 CCAACAACAGAGACCGGTGG 60.885 60.000 14.63 0.00 0.00 4.61
1478 1544 1.133792 AGTCCCCTGAACCAACAACAG 60.134 52.381 0.00 0.00 0.00 3.16
1487 1555 0.606673 GTCCTTGCAGTCCCCTGAAC 60.607 60.000 0.00 0.00 41.50 3.18
1488 1556 1.761174 GTCCTTGCAGTCCCCTGAA 59.239 57.895 0.00 0.00 41.50 3.02
1557 1625 1.668101 CGTAGGTGAGGAGCTGGGAC 61.668 65.000 0.00 0.00 0.00 4.46
1627 1707 4.206609 GCCGACGTTTGTATGATCTAACTC 59.793 45.833 0.00 0.00 0.00 3.01
1648 1728 5.428253 TCAGTATACCAAAAGAGATGTGCC 58.572 41.667 0.00 0.00 0.00 5.01
1680 1778 9.920133 CTGCAGTATTTCATACATACAGATACT 57.080 33.333 5.25 0.00 38.21 2.12
1687 1794 9.712305 AGGTTATCTGCAGTATTTCATACATAC 57.288 33.333 14.67 0.00 38.21 2.39
1689 1798 8.432013 TCAGGTTATCTGCAGTATTTCATACAT 58.568 33.333 14.67 0.00 43.06 2.29
1696 1805 4.161565 TCCGTCAGGTTATCTGCAGTATTT 59.838 41.667 14.67 0.09 43.06 1.40
1793 1905 4.084118 TGCAACAGAAACACTTGCAAAAAC 60.084 37.500 0.00 0.00 44.40 2.43
1816 1928 1.458639 GCTGCCTGAACTTGCAACCT 61.459 55.000 0.00 0.00 36.98 3.50
1949 2068 4.827284 TCAGTCTGATGTCTGAACTACACA 59.173 41.667 0.00 0.00 35.92 3.72
1963 2085 5.244402 TCATTGCCACATTTTTCAGTCTGAT 59.756 36.000 2.68 0.00 0.00 2.90
1966 2175 5.475719 CATCATTGCCACATTTTTCAGTCT 58.524 37.500 0.00 0.00 0.00 3.24
1986 2195 2.608752 CCAAGGCACAAGTTTCAGCATC 60.609 50.000 0.00 0.00 0.00 3.91
1989 2198 0.746659 ACCAAGGCACAAGTTTCAGC 59.253 50.000 0.00 0.00 0.00 4.26
1990 2199 2.166254 ACAACCAAGGCACAAGTTTCAG 59.834 45.455 0.00 0.00 0.00 3.02
1992 2201 2.959507 ACAACCAAGGCACAAGTTTC 57.040 45.000 0.00 0.00 0.00 2.78
1993 2202 6.041523 ACATATAACAACCAAGGCACAAGTTT 59.958 34.615 0.00 0.00 0.00 2.66
1994 2203 5.538433 ACATATAACAACCAAGGCACAAGTT 59.462 36.000 0.00 0.00 0.00 2.66
1995 2204 5.076873 ACATATAACAACCAAGGCACAAGT 58.923 37.500 0.00 0.00 0.00 3.16
1996 2205 5.643379 ACATATAACAACCAAGGCACAAG 57.357 39.130 0.00 0.00 0.00 3.16
1998 2207 4.830046 ACAACATATAACAACCAAGGCACA 59.170 37.500 0.00 0.00 0.00 4.57
2000 2209 5.073428 TGACAACATATAACAACCAAGGCA 58.927 37.500 0.00 0.00 0.00 4.75
2001 2210 5.393027 CCTGACAACATATAACAACCAAGGC 60.393 44.000 0.00 0.00 0.00 4.35
2002 2211 5.710099 ACCTGACAACATATAACAACCAAGG 59.290 40.000 0.00 0.00 0.00 3.61
2003 2212 6.817765 ACCTGACAACATATAACAACCAAG 57.182 37.500 0.00 0.00 0.00 3.61
2004 2213 7.338196 CCATACCTGACAACATATAACAACCAA 59.662 37.037 0.00 0.00 0.00 3.67
2009 2218 6.816616 TCCCATACCTGACAACATATAACA 57.183 37.500 0.00 0.00 0.00 2.41
2010 2219 7.173218 CACATCCCATACCTGACAACATATAAC 59.827 40.741 0.00 0.00 0.00 1.89
2013 2222 5.369404 TCACATCCCATACCTGACAACATAT 59.631 40.000 0.00 0.00 0.00 1.78
2162 2428 9.507329 CAGAAATTTACCAGCCACTGTATATAT 57.493 33.333 0.00 0.00 0.00 0.86
2163 2429 7.936847 CCAGAAATTTACCAGCCACTGTATATA 59.063 37.037 0.00 0.00 0.00 0.86
2164 2430 6.772716 CCAGAAATTTACCAGCCACTGTATAT 59.227 38.462 0.00 0.00 0.00 0.86
2165 2431 6.119536 CCAGAAATTTACCAGCCACTGTATA 58.880 40.000 0.00 0.00 0.00 1.47
2166 2432 4.949856 CCAGAAATTTACCAGCCACTGTAT 59.050 41.667 0.00 0.00 0.00 2.29
2167 2433 4.202524 ACCAGAAATTTACCAGCCACTGTA 60.203 41.667 0.00 0.00 0.00 2.74
2168 2434 3.157087 CCAGAAATTTACCAGCCACTGT 58.843 45.455 0.00 0.00 0.00 3.55
2169 2435 3.157087 ACCAGAAATTTACCAGCCACTG 58.843 45.455 0.00 0.00 0.00 3.66
2170 2436 3.525800 ACCAGAAATTTACCAGCCACT 57.474 42.857 0.00 0.00 0.00 4.00
2171 2437 4.156008 CAGTACCAGAAATTTACCAGCCAC 59.844 45.833 0.00 0.00 0.00 5.01
2172 2438 4.202524 ACAGTACCAGAAATTTACCAGCCA 60.203 41.667 0.00 0.00 0.00 4.75
2173 2439 4.332828 ACAGTACCAGAAATTTACCAGCC 58.667 43.478 0.00 0.00 0.00 4.85
2174 2440 6.171213 ACTACAGTACCAGAAATTTACCAGC 58.829 40.000 0.00 0.00 0.00 4.85
2175 2441 9.148104 GTTACTACAGTACCAGAAATTTACCAG 57.852 37.037 0.00 0.00 0.00 4.00
2176 2442 8.873144 AGTTACTACAGTACCAGAAATTTACCA 58.127 33.333 0.00 0.00 0.00 3.25
2177 2443 9.148104 CAGTTACTACAGTACCAGAAATTTACC 57.852 37.037 0.00 0.00 0.00 2.85
2189 2455 4.675190 TCAGCGTCAGTTACTACAGTAC 57.325 45.455 0.00 0.00 0.00 2.73
2212 2478 0.325933 CCCCTGCAATCACTCAGTCA 59.674 55.000 0.00 0.00 0.00 3.41
2215 2481 1.751927 GCCCCCTGCAATCACTCAG 60.752 63.158 0.00 0.00 40.77 3.35
2305 2571 3.846360 AGAAAGAAATCAAGCATGCTGC 58.154 40.909 23.48 6.89 45.46 5.25
2306 2572 6.645415 AGAAAAGAAAGAAATCAAGCATGCTG 59.355 34.615 23.48 15.40 0.00 4.41
2307 2573 6.756221 AGAAAAGAAAGAAATCAAGCATGCT 58.244 32.000 16.30 16.30 0.00 3.79
2308 2574 7.417496 AAGAAAAGAAAGAAATCAAGCATGC 57.583 32.000 10.51 10.51 0.00 4.06
2336 2602 4.408596 ACATGCTTTTCCTTTTCCCTTTGA 59.591 37.500 0.00 0.00 0.00 2.69
2348 2614 7.432252 CCGAATAAATACTGAACATGCTTTTCC 59.568 37.037 0.00 0.00 0.00 3.13
2349 2615 7.968405 ACCGAATAAATACTGAACATGCTTTTC 59.032 33.333 0.00 0.00 0.00 2.29
2355 2628 7.526608 ACACAACCGAATAAATACTGAACATG 58.473 34.615 0.00 0.00 0.00 3.21
2396 2669 6.279513 TCTGGGCCATAAGTAAACATTTTG 57.720 37.500 6.72 0.00 0.00 2.44
2401 2674 9.875708 AATAATAATCTGGGCCATAAGTAAACA 57.124 29.630 6.72 0.00 0.00 2.83
2403 2676 9.528489 GGAATAATAATCTGGGCCATAAGTAAA 57.472 33.333 6.72 0.00 0.00 2.01
2405 2678 8.225863 TGGAATAATAATCTGGGCCATAAGTA 57.774 34.615 6.72 2.29 0.00 2.24
2406 2679 7.102518 TGGAATAATAATCTGGGCCATAAGT 57.897 36.000 6.72 0.00 0.00 2.24
2407 2680 8.599624 AATGGAATAATAATCTGGGCCATAAG 57.400 34.615 6.72 0.00 34.04 1.73
2411 2684 9.866655 GATATAATGGAATAATAATCTGGGCCA 57.133 33.333 5.85 5.85 0.00 5.36
2413 2686 8.507249 GCGATATAATGGAATAATAATCTGGGC 58.493 37.037 0.00 0.00 0.00 5.36
2414 2687 9.559732 TGCGATATAATGGAATAATAATCTGGG 57.440 33.333 0.00 0.00 0.00 4.45
2432 2716 6.248631 CGATCAGACGACTAAATGCGATATA 58.751 40.000 0.00 0.00 35.09 0.86
2445 2729 1.944024 AGATGAGACCGATCAGACGAC 59.056 52.381 0.00 0.00 35.09 4.34
2447 2731 3.562141 AGTTAGATGAGACCGATCAGACG 59.438 47.826 0.00 0.00 31.44 4.18
2457 2741 6.867816 CCATATCTTGCAGAGTTAGATGAGAC 59.132 42.308 7.90 0.00 31.46 3.36
2574 2871 3.711704 AGATGATGGTCCTACGTTGGATT 59.288 43.478 21.53 9.98 38.52 3.01
2577 2874 2.224066 GGAGATGATGGTCCTACGTTGG 60.224 54.545 10.01 10.01 0.00 3.77
2607 2906 4.800993 GTCATTTGGTCACTCTATCAGTCG 59.199 45.833 0.00 0.00 30.26 4.18
2610 2909 4.872691 GTGGTCATTTGGTCACTCTATCAG 59.127 45.833 0.00 0.00 0.00 2.90
2620 2921 4.393062 CACAGATACAGTGGTCATTTGGTC 59.607 45.833 0.00 0.00 33.43 4.02
2623 2929 4.756642 ACACACAGATACAGTGGTCATTTG 59.243 41.667 0.00 0.00 41.21 2.32
2639 2945 1.483316 TACGCGTCTGAAACACACAG 58.517 50.000 18.63 0.00 36.80 3.66
2644 2950 1.722464 CCGAAATACGCGTCTGAAACA 59.278 47.619 18.63 0.00 41.07 2.83
2646 2952 1.067706 TCCCGAAATACGCGTCTGAAA 60.068 47.619 18.63 0.00 41.07 2.69
2648 2954 0.099968 CTCCCGAAATACGCGTCTGA 59.900 55.000 18.63 0.00 41.07 3.27
2653 2959 2.237751 CCTGCTCCCGAAATACGCG 61.238 63.158 3.53 3.53 41.07 6.01
2655 2961 1.144057 AGCCTGCTCCCGAAATACG 59.856 57.895 0.00 0.00 42.18 3.06
2743 3049 9.915629 AGTAATAATCACTAAGCCTTCGATTAG 57.084 33.333 2.66 2.66 33.41 1.73
2749 3055 9.130312 CGACATAGTAATAATCACTAAGCCTTC 57.870 37.037 0.00 0.00 32.47 3.46
2766 3072 7.925703 GCAGTCTATAAAAAGCGACATAGTA 57.074 36.000 0.00 0.00 0.00 1.82
2767 3073 6.830114 GCAGTCTATAAAAAGCGACATAGT 57.170 37.500 0.00 0.00 0.00 2.12
2791 3097 5.008613 TCTGTGCCAAGTTAAAACATCACTC 59.991 40.000 0.00 0.00 0.00 3.51
2822 7597 1.557443 GAACAGCACCAACTCGACCG 61.557 60.000 0.00 0.00 0.00 4.79
2861 7636 4.705023 CCCAAGATCCGTCCACTTTATTTT 59.295 41.667 0.00 0.00 0.00 1.82
2875 7654 0.039618 TTCCAGTTGGCCCAAGATCC 59.960 55.000 0.00 0.00 34.44 3.36
2925 7729 3.872240 GCACAGGGTATAGTTGCCAAAGA 60.872 47.826 0.00 0.00 0.00 2.52
2928 7732 1.352687 TGCACAGGGTATAGTTGCCAA 59.647 47.619 0.00 0.00 0.00 4.52
2930 7734 2.348411 ATGCACAGGGTATAGTTGCC 57.652 50.000 0.00 0.00 0.00 4.52
2931 7735 4.389374 ACATATGCACAGGGTATAGTTGC 58.611 43.478 1.58 0.00 0.00 4.17
2942 7746 1.162181 CCGGCCTGACATATGCACAG 61.162 60.000 17.99 17.99 0.00 3.66
2970 7774 0.834612 ATATTTTCAGCCCGGACCGA 59.165 50.000 17.49 0.00 0.00 4.69
2971 7775 2.536761 TATATTTTCAGCCCGGACCG 57.463 50.000 6.99 6.99 0.00 4.79
2972 7776 3.751518 ACATATATTTTCAGCCCGGACC 58.248 45.455 0.73 0.00 0.00 4.46
3127 9249 6.205658 TCCAATGTGAAATACGATTGTGTTCA 59.794 34.615 9.05 9.05 33.56 3.18
3137 9259 9.186323 TGTTAAACAATTCCAATGTGAAATACG 57.814 29.630 0.00 0.00 0.00 3.06
3280 9402 7.573283 GCATTTTTACCTCCTACAACTCACTTC 60.573 40.741 0.00 0.00 0.00 3.01
3290 9412 9.609346 TTTATACTGAGCATTTTTACCTCCTAC 57.391 33.333 0.00 0.00 0.00 3.18
3308 9430 9.807921 ATAAATGGTTCCCACCTATTTATACTG 57.192 33.333 14.02 0.00 44.61 2.74
3323 9445 9.087424 GCACAAAGAATAAGAATAAATGGTTCC 57.913 33.333 0.00 0.00 0.00 3.62
3351 9473 3.560105 GGATTCCTTCCAGCAAGCTATT 58.440 45.455 0.00 0.00 44.74 1.73
3391 9513 1.599047 CTCAGACGGTGGGAGCATT 59.401 57.895 0.00 0.00 0.00 3.56
3392 9514 2.362369 CCTCAGACGGTGGGAGCAT 61.362 63.158 0.00 0.00 0.00 3.79
3411 9533 3.251004 GCACGGTATTCCTCAATTGATCC 59.749 47.826 8.96 4.61 0.00 3.36
3430 9552 0.321122 CCAGAGTGGTCTCCTTGCAC 60.321 60.000 0.00 0.00 41.26 4.57
3446 9568 3.411446 TGGCAGAATTGTACACTTCCAG 58.589 45.455 19.14 14.23 0.00 3.86
3453 9575 2.813754 GCTCAGTTGGCAGAATTGTACA 59.186 45.455 0.00 0.00 0.00 2.90
3487 10054 5.552178 GTTCACTTCTTACCAGTCAAGGAT 58.448 41.667 0.00 0.00 0.00 3.24
3504 10071 4.323553 AAGCTCACTAAAGTCGTTCACT 57.676 40.909 0.00 0.00 36.64 3.41
3509 10076 6.531948 GTCATTGATAAGCTCACTAAAGTCGT 59.468 38.462 0.00 0.00 32.17 4.34
3547 10114 5.714806 TCCCAAATCCAAGAAAGGTAATGAC 59.285 40.000 0.00 0.00 0.00 3.06
3595 10682 5.128663 TCCTGAGTGGAAATTCGATCACATA 59.871 40.000 4.25 0.00 42.94 2.29
3642 10729 1.173043 GAAACACCATCATCCGGCAA 58.827 50.000 0.00 0.00 0.00 4.52
3662 10852 1.347707 TGTTTCCCGCAGAGTGAAGAT 59.652 47.619 0.00 0.00 0.00 2.40
3673 10863 0.949105 ACGAGTGTGATGTTTCCCGC 60.949 55.000 0.00 0.00 0.00 6.13
3677 10867 4.530094 TTGTCAACGAGTGTGATGTTTC 57.470 40.909 0.00 0.00 0.00 2.78
3714 10904 4.819105 TTCTGGTGGACTCGTATGAAAT 57.181 40.909 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.