Multiple sequence alignment - TraesCS3A01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G043700 chr3A 100.000 8175 0 0 1 8175 23822011 23830185 0.000000e+00 15097
1 TraesCS3A01G043700 chr3A 87.976 840 62 12 936 1764 691207868 691208679 0.000000e+00 955
2 TraesCS3A01G043700 chr3A 91.789 475 27 6 2511 2984 23824109 23824572 0.000000e+00 651
3 TraesCS3A01G043700 chr3A 91.789 475 27 6 2099 2562 23824521 23824994 0.000000e+00 651
4 TraesCS3A01G043700 chr3A 80.657 274 37 10 5359 5624 23827318 23827583 1.800000e-46 198
5 TraesCS3A01G043700 chr3A 80.657 274 37 11 5308 5573 23827369 23827634 1.800000e-46 198
6 TraesCS3A01G043700 chr3A 98.305 59 1 0 3283 3341 23825239 23825297 4.040000e-18 104
7 TraesCS3A01G043700 chr3A 98.305 59 1 0 3229 3287 23825293 23825351 4.040000e-18 104
8 TraesCS3A01G043700 chr3D 90.928 1929 119 40 5315 7226 13310061 13308172 0.000000e+00 2542
9 TraesCS3A01G043700 chr3D 88.378 1523 86 35 765 2245 13314683 13313210 0.000000e+00 1748
10 TraesCS3A01G043700 chr3D 87.838 740 74 13 4871 5605 13310607 13309879 0.000000e+00 854
11 TraesCS3A01G043700 chr3D 81.971 893 123 21 3355 4230 13312391 13311520 0.000000e+00 723
12 TraesCS3A01G043700 chr3D 87.194 531 53 7 1 528 13316174 13315656 2.540000e-164 590
13 TraesCS3A01G043700 chr3D 86.009 436 35 14 4413 4848 13311477 13311068 2.090000e-120 444
14 TraesCS3A01G043700 chr3D 86.262 313 34 5 6 314 13315375 13315068 1.700000e-86 331
15 TraesCS3A01G043700 chr3D 82.967 364 30 17 446 780 13315061 13314701 4.800000e-77 300
16 TraesCS3A01G043700 chr3D 85.537 242 17 5 7786 8011 379244517 379244756 3.810000e-58 237
17 TraesCS3A01G043700 chr3D 72.599 989 162 51 2187 3106 13312906 13311958 2.970000e-54 224
18 TraesCS3A01G043700 chr3D 88.750 160 14 4 2123 2281 13313162 13313006 8.370000e-45 193
19 TraesCS3A01G043700 chr3D 81.481 243 28 13 7533 7763 13307855 13307618 5.040000e-42 183
20 TraesCS3A01G043700 chr3D 91.262 103 4 3 7219 7316 13308144 13308042 1.430000e-27 135
21 TraesCS3A01G043700 chr3D 83.824 136 4 2 8051 8175 13307622 13307494 6.710000e-21 113
22 TraesCS3A01G043700 chr3B 92.951 1759 97 14 4855 6603 19266079 19264338 0.000000e+00 2536
23 TraesCS3A01G043700 chr3B 87.524 1531 87 46 765 2245 19270463 19268987 0.000000e+00 1674
24 TraesCS3A01G043700 chr3B 92.691 602 33 9 6635 7226 19264140 19263540 0.000000e+00 857
25 TraesCS3A01G043700 chr3B 79.093 1124 169 43 3145 4230 19268186 19267091 0.000000e+00 713
26 TraesCS3A01G043700 chr3B 90.985 477 40 3 5822 6296 759965510 759965035 2.490000e-179 640
27 TraesCS3A01G043700 chr3B 85.420 583 47 16 5 562 19271587 19271018 9.200000e-159 571
28 TraesCS3A01G043700 chr3B 85.805 472 58 5 59 528 19272331 19271867 7.370000e-135 492
29 TraesCS3A01G043700 chr3B 87.559 426 36 8 4413 4834 19267048 19266636 2.060000e-130 477
30 TraesCS3A01G043700 chr3B 91.126 293 24 2 6635 6926 137278590 137278881 5.950000e-106 396
31 TraesCS3A01G043700 chr3B 76.486 774 108 42 2123 2873 19268939 19268217 3.630000e-93 353
32 TraesCS3A01G043700 chr3B 73.034 1068 184 63 2106 3106 19268564 19267534 1.740000e-71 281
33 TraesCS3A01G043700 chr3B 83.333 240 10 12 7533 7762 19263144 19262925 2.330000e-45 195
34 TraesCS3A01G043700 chr3B 80.364 275 37 12 5308 5573 19265574 19265308 8.370000e-45 193
35 TraesCS3A01G043700 chr3B 80.435 276 35 13 5359 5624 19265625 19265359 8.370000e-45 193
36 TraesCS3A01G043700 chr3B 90.511 137 13 0 6462 6598 137278455 137278591 1.810000e-41 182
37 TraesCS3A01G043700 chr3B 81.982 222 20 7 7219 7421 19263517 19263297 3.920000e-38 171
38 TraesCS3A01G043700 chr3B 87.500 112 8 5 7641 7750 385854108 385854215 3.100000e-24 124
39 TraesCS3A01G043700 chr3B 89.535 86 7 2 2584 2668 19269071 19268987 3.120000e-19 108
40 TraesCS3A01G043700 chr1B 88.870 593 39 8 1181 1767 661298496 661297925 0.000000e+00 704
41 TraesCS3A01G043700 chr1B 89.899 297 28 2 6635 6930 599470399 599470694 1.660000e-101 381
42 TraesCS3A01G043700 chr1B 88.571 105 8 3 7646 7750 303874434 303874334 3.100000e-24 124
43 TraesCS3A01G043700 chr7B 90.417 480 43 3 5819 6296 738629615 738630093 5.390000e-176 628
44 TraesCS3A01G043700 chr7B 90.208 480 44 3 5819 6296 738760155 738760633 2.510000e-174 623
45 TraesCS3A01G043700 chr7B 90.034 291 28 1 6640 6930 636064485 636064196 7.750000e-100 375
46 TraesCS3A01G043700 chr7B 89.781 137 14 0 6462 6598 636064626 636064490 8.430000e-40 176
47 TraesCS3A01G043700 chr7B 85.714 112 10 4 7641 7750 576358544 576358651 6.710000e-21 113
48 TraesCS3A01G043700 chr5B 90.566 477 42 3 5822 6296 609163454 609162979 5.390000e-176 628
49 TraesCS3A01G043700 chr5B 89.423 104 11 0 7787 7890 636902459 636902356 1.850000e-26 132
50 TraesCS3A01G043700 chr4B 90.566 477 42 3 5822 6296 1728893 1728418 5.390000e-176 628
51 TraesCS3A01G043700 chr4B 90.909 297 24 3 6635 6930 609789286 609788992 5.950000e-106 396
52 TraesCS3A01G043700 chr6B 89.792 480 46 3 5819 6296 107630394 107630872 5.420000e-171 612
53 TraesCS3A01G043700 chr6B 90.385 104 10 0 7787 7890 182140926 182141029 3.980000e-28 137
54 TraesCS3A01G043700 chr6B 87.778 90 5 5 7641 7728 233934114 233934199 5.220000e-17 100
55 TraesCS3A01G043700 chr6B 82.500 120 15 4 7646 7763 691688442 691688327 5.220000e-17 100
56 TraesCS3A01G043700 chr2B 89.583 480 47 3 5819 6296 722018321 722018799 2.520000e-169 606
57 TraesCS3A01G043700 chr1D 83.270 526 75 9 3716 4230 453048099 453048622 9.600000e-129 472
58 TraesCS3A01G043700 chr1D 92.857 210 14 1 4639 4848 453048816 453049024 3.710000e-78 303
59 TraesCS3A01G043700 chr2D 91.919 297 22 2 6635 6930 99507274 99506979 1.640000e-111 414
60 TraesCS3A01G043700 chr6D 91.582 297 23 2 6635 6930 36710250 36709955 7.640000e-110 409
61 TraesCS3A01G043700 chr6D 81.250 224 21 8 7785 7993 327002327 327002544 2.360000e-35 161
62 TraesCS3A01G043700 chr6D 87.288 118 11 2 7646 7763 201578620 201578507 1.850000e-26 132
63 TraesCS3A01G043700 chr6A 89.226 297 30 2 6635 6930 542012791 542013086 3.600000e-98 370
64 TraesCS3A01G043700 chr6A 90.385 104 10 0 7787 7890 88272013 88272116 3.980000e-28 137
65 TraesCS3A01G043700 chr4A 82.553 235 25 4 7785 8003 615185147 615185381 8.370000e-45 193
66 TraesCS3A01G043700 chr4A 82.041 245 26 7 7785 8011 717761037 717761281 8.370000e-45 193
67 TraesCS3A01G043700 chr4A 90.385 104 10 0 7787 7890 503416853 503416956 3.980000e-28 137
68 TraesCS3A01G043700 chr7D 90.000 100 10 0 7791 7890 32071091 32070992 6.660000e-26 130
69 TraesCS3A01G043700 chr2A 86.441 118 11 3 7646 7763 377020456 377020344 3.100000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G043700 chr3A 23822011 23830185 8174 False 15097.000000 15097 100.000000 1 8175 1 chr3A.!!$F1 8174
1 TraesCS3A01G043700 chr3A 691207868 691208679 811 False 955.000000 955 87.976000 936 1764 1 chr3A.!!$F2 828
2 TraesCS3A01G043700 chr3A 23824109 23827634 3525 False 317.666667 651 90.250333 2099 5624 6 chr3A.!!$F3 3525
3 TraesCS3A01G043700 chr3D 13307494 13316174 8680 True 644.615385 2542 85.343308 1 8175 13 chr3D.!!$R1 8174
4 TraesCS3A01G043700 chr3B 19262925 19272331 9406 True 629.571429 2536 84.015143 5 7762 14 chr3B.!!$R2 7757
5 TraesCS3A01G043700 chr1B 661297925 661298496 571 True 704.000000 704 88.870000 1181 1767 1 chr1B.!!$R2 586
6 TraesCS3A01G043700 chr1D 453048099 453049024 925 False 387.500000 472 88.063500 3716 4848 2 chr1D.!!$F1 1132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 1504 0.337082 TTCTCACGATCCACCCCCTA 59.663 55.0 0.00 0.0 0.00 3.53 F
670 1511 0.545548 GATCCACCCCCTAGCCCTAG 60.546 65.0 0.00 0.0 0.00 3.02 F
1966 3237 0.669318 CTTCGCGGACTACTTTGGCA 60.669 55.0 6.13 0.0 0.00 4.92 F
2076 3347 0.035343 GCCTTACTGGTTCACCCCTC 60.035 60.0 0.00 0.0 38.35 4.30 F
5805 8053 0.030638 ATGCACGTGTCAAGGTTTGC 59.969 50.0 18.38 0.0 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 3084 0.033504 CTCACGGCACAGTACCAACT 59.966 55.0 0.00 0.0 35.91 3.16 R
2057 3328 0.035343 GAGGGGTGAACCAGTAAGGC 60.035 60.0 1.16 0.0 43.14 4.35 R
5805 8053 6.064717 CCACAGAAAGGAGGGGATAATTTAG 58.935 44.0 0.00 0.0 0.00 1.85 R
5812 8060 0.846427 TGCCACAGAAAGGAGGGGAT 60.846 55.0 0.00 0.0 0.00 3.85 R
8041 10659 0.034198 TGTGGTGTGGTGTCGTATGG 59.966 55.0 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.607251 GCGGCGGGCATAGTTAATACT 60.607 52.381 9.78 0.00 42.87 2.12
61 62 4.701956 AACTATTTTGCCCTCGTGAATG 57.298 40.909 0.00 0.00 0.00 2.67
65 66 2.559698 TTTGCCCTCGTGAATGAGAA 57.440 45.000 0.94 0.00 38.28 2.87
68 69 1.338105 TGCCCTCGTGAATGAGAACAG 60.338 52.381 0.94 0.00 38.28 3.16
72 73 2.989840 CCTCGTGAATGAGAACAGTGTC 59.010 50.000 0.00 0.00 38.28 3.67
74 75 1.125021 CGTGAATGAGAACAGTGTCGC 59.875 52.381 0.00 0.00 0.00 5.19
147 150 1.745320 AACTTCGCACCCACGAGTCT 61.745 55.000 0.00 0.00 44.00 3.24
149 152 2.421877 CTTCGCACCCACGAGTCTGT 62.422 60.000 0.00 0.00 44.00 3.41
182 185 5.826601 TGTATATCCAAAGCATCGCAAAA 57.173 34.783 0.00 0.00 0.00 2.44
215 219 4.442893 CGGAACTGGAAGATAGCATAACCA 60.443 45.833 0.00 0.00 37.43 3.67
270 274 1.147376 CCACTTTCCACGTCACCCA 59.853 57.895 0.00 0.00 0.00 4.51
289 293 2.501881 CACGCCGTTTCTTTAAATCGG 58.498 47.619 13.21 13.21 39.83 4.18
297 301 4.779523 CGTTTCTTTAAATCGGCAGTAACG 59.220 41.667 0.00 0.00 34.94 3.18
300 304 0.370958 TTAAATCGGCAGTAACGCGC 59.629 50.000 5.73 0.00 0.00 6.86
301 305 0.736672 TAAATCGGCAGTAACGCGCA 60.737 50.000 5.73 0.00 0.00 6.09
334 338 2.032071 CGCGGGAAACTTCACCCT 59.968 61.111 0.00 0.00 43.57 4.34
346 350 6.295292 GGAAACTTCACCCTGATTAAAAGCAT 60.295 38.462 0.00 0.00 0.00 3.79
398 402 3.802866 ACCGGTAACCTTCACGTAAAAA 58.197 40.909 4.49 0.00 0.00 1.94
406 410 4.520179 ACCTTCACGTAAAAACAAGAGGT 58.480 39.130 0.00 0.00 0.00 3.85
428 432 1.684049 CTCCTTCTCTCCCGCCACT 60.684 63.158 0.00 0.00 0.00 4.00
429 433 1.671901 CTCCTTCTCTCCCGCCACTC 61.672 65.000 0.00 0.00 0.00 3.51
441 445 2.612115 CCACTCCCTCCCAGCCTT 60.612 66.667 0.00 0.00 0.00 4.35
486 1308 1.406539 GCCCGCAAGAACATCATCAAT 59.593 47.619 0.00 0.00 43.02 2.57
490 1312 5.048782 GCCCGCAAGAACATCATCAATAATA 60.049 40.000 0.00 0.00 43.02 0.98
492 1314 6.427853 CCCGCAAGAACATCATCAATAATAGA 59.572 38.462 0.00 0.00 43.02 1.98
591 1432 4.008074 TCAGCAAGGACTAAAAGGTGAG 57.992 45.455 0.00 0.00 33.40 3.51
594 1435 3.391296 AGCAAGGACTAAAAGGTGAGACA 59.609 43.478 0.00 0.00 0.00 3.41
597 1438 5.308825 CAAGGACTAAAAGGTGAGACACAT 58.691 41.667 0.00 0.00 35.86 3.21
599 1440 6.875972 AGGACTAAAAGGTGAGACACATAT 57.124 37.500 0.00 0.00 35.86 1.78
609 1450 6.957631 AGGTGAGACACATATATTGTTTCCA 58.042 36.000 0.00 5.69 35.95 3.53
622 1463 5.606348 ATTGTTTCCACCTTGCTTACAAA 57.394 34.783 0.00 0.00 34.74 2.83
631 1472 2.296190 CCTTGCTTACAAAAGTGACCCC 59.704 50.000 0.00 0.00 34.74 4.95
636 1477 3.496331 CTTACAAAAGTGACCCCACCAT 58.504 45.455 0.00 0.00 44.22 3.55
638 1479 1.499007 ACAAAAGTGACCCCACCATCT 59.501 47.619 0.00 0.00 44.22 2.90
663 1504 0.337082 TTCTCACGATCCACCCCCTA 59.663 55.000 0.00 0.00 0.00 3.53
666 1507 2.446036 ACGATCCACCCCCTAGCC 60.446 66.667 0.00 0.00 0.00 3.93
667 1508 3.242291 CGATCCACCCCCTAGCCC 61.242 72.222 0.00 0.00 0.00 5.19
669 1510 1.552393 GATCCACCCCCTAGCCCTA 59.448 63.158 0.00 0.00 0.00 3.53
670 1511 0.545548 GATCCACCCCCTAGCCCTAG 60.546 65.000 0.00 0.00 0.00 3.02
693 1541 4.051167 CTGCATCCACAGGGGCCA 62.051 66.667 4.39 0.00 36.21 5.36
694 1542 4.051167 TGCATCCACAGGGGCCAG 62.051 66.667 4.39 0.00 36.21 4.85
751 1898 5.291971 TCCATCAATCGCCATATCATATCG 58.708 41.667 0.00 0.00 0.00 2.92
756 1903 5.063817 TCAATCGCCATATCATATCGCAAAG 59.936 40.000 0.00 0.00 0.00 2.77
757 1904 2.672874 TCGCCATATCATATCGCAAAGC 59.327 45.455 0.00 0.00 0.00 3.51
758 1905 2.223112 CGCCATATCATATCGCAAAGCC 60.223 50.000 0.00 0.00 0.00 4.35
812 1992 1.134220 GGATTACGTCCCAATGCAGGA 60.134 52.381 0.00 0.00 41.50 3.86
875 2055 3.474034 GCTCACGCTCACGCTCAC 61.474 66.667 0.00 0.00 45.53 3.51
876 2056 3.168604 CTCACGCTCACGCTCACG 61.169 66.667 0.00 0.00 45.53 4.35
943 2155 1.659794 GGCTCTCATCGCTCTCCTC 59.340 63.158 0.00 0.00 0.00 3.71
944 2156 1.659794 GCTCTCATCGCTCTCCTCC 59.340 63.158 0.00 0.00 0.00 4.30
945 2157 0.823356 GCTCTCATCGCTCTCCTCCT 60.823 60.000 0.00 0.00 0.00 3.69
946 2158 1.238439 CTCTCATCGCTCTCCTCCTC 58.762 60.000 0.00 0.00 0.00 3.71
1004 2221 2.101965 CAGACCAGAGCGAGCGAG 59.898 66.667 0.00 0.00 0.00 5.03
1005 2222 3.821055 AGACCAGAGCGAGCGAGC 61.821 66.667 0.00 0.00 37.41 5.03
1028 2245 3.334054 ACTTGCCTCTCCCCTGCC 61.334 66.667 0.00 0.00 0.00 4.85
1047 2264 4.351938 CGACCCCGCTCGTGAACA 62.352 66.667 0.00 0.00 0.00 3.18
1172 2412 2.743928 CACGGCTGGCAGAAGGTC 60.744 66.667 20.86 0.00 0.00 3.85
1563 2824 2.204819 TACCCCTACCCCTCCCCA 60.205 66.667 0.00 0.00 0.00 4.96
1623 2884 1.595382 CGGTCCGGATCATGGCTTC 60.595 63.158 16.61 0.00 0.00 3.86
1636 2897 1.125093 TGGCTTCGTCTCCTTCCCAA 61.125 55.000 0.00 0.00 0.00 4.12
1663 2924 1.205460 ATCTGGCCGGGGTTTAGTGT 61.205 55.000 12.87 0.00 0.00 3.55
1707 2968 5.048713 CCAAATTCCCTTACACTGTTCTGTC 60.049 44.000 0.00 0.00 0.00 3.51
1723 2984 2.036733 TCTGTCCCAACTAGTTTCGTGG 59.963 50.000 5.07 4.77 0.00 4.94
1819 3084 2.505819 GGGATCTCAGAAAGGCTTGGTA 59.494 50.000 0.00 0.00 0.00 3.25
1833 3098 2.423577 CTTGGTAGTTGGTACTGTGCC 58.576 52.381 8.09 8.09 35.78 5.01
1966 3237 0.669318 CTTCGCGGACTACTTTGGCA 60.669 55.000 6.13 0.00 0.00 4.92
2055 3326 4.396166 CCCAAGATGGTTGATGTGAGTTAC 59.604 45.833 0.00 0.00 35.17 2.50
2056 3327 5.248640 CCAAGATGGTTGATGTGAGTTACT 58.751 41.667 0.00 0.00 31.35 2.24
2057 3328 5.122869 CCAAGATGGTTGATGTGAGTTACTG 59.877 44.000 0.00 0.00 31.35 2.74
2058 3329 4.256920 AGATGGTTGATGTGAGTTACTGC 58.743 43.478 0.00 0.00 0.00 4.40
2059 3330 2.778299 TGGTTGATGTGAGTTACTGCC 58.222 47.619 0.00 0.00 0.00 4.85
2060 3331 2.371841 TGGTTGATGTGAGTTACTGCCT 59.628 45.455 0.00 0.00 0.00 4.75
2062 3333 4.041075 TGGTTGATGTGAGTTACTGCCTTA 59.959 41.667 0.00 0.00 0.00 2.69
2064 3335 5.238583 GTTGATGTGAGTTACTGCCTTACT 58.761 41.667 0.00 0.00 0.00 2.24
2065 3336 4.820897 TGATGTGAGTTACTGCCTTACTG 58.179 43.478 0.00 0.00 0.00 2.74
2066 3337 3.678056 TGTGAGTTACTGCCTTACTGG 57.322 47.619 0.00 0.00 39.35 4.00
2067 3338 2.969950 TGTGAGTTACTGCCTTACTGGT 59.030 45.455 0.00 0.00 38.35 4.00
2068 3339 3.389983 TGTGAGTTACTGCCTTACTGGTT 59.610 43.478 0.00 0.00 38.35 3.67
2069 3340 3.995048 GTGAGTTACTGCCTTACTGGTTC 59.005 47.826 0.00 0.00 38.35 3.62
2070 3341 3.644265 TGAGTTACTGCCTTACTGGTTCA 59.356 43.478 0.00 0.00 38.35 3.18
2072 3343 3.072211 GTTACTGCCTTACTGGTTCACC 58.928 50.000 0.00 0.00 38.35 4.02
2073 3344 0.400594 ACTGCCTTACTGGTTCACCC 59.599 55.000 0.00 0.00 38.35 4.61
2076 3347 0.035343 GCCTTACTGGTTCACCCCTC 60.035 60.000 0.00 0.00 38.35 4.30
2077 3348 0.249398 CCTTACTGGTTCACCCCTCG 59.751 60.000 0.00 0.00 34.29 4.63
2080 3351 1.255667 TACTGGTTCACCCCTCGCTC 61.256 60.000 0.00 0.00 34.29 5.03
2081 3352 3.316573 CTGGTTCACCCCTCGCTCC 62.317 68.421 0.00 0.00 34.29 4.70
2084 3355 1.376037 GTTCACCCCTCGCTCCTTG 60.376 63.158 0.00 0.00 0.00 3.61
2087 3358 0.909610 TCACCCCTCGCTCCTTGATT 60.910 55.000 0.00 0.00 0.00 2.57
2089 3360 0.618968 ACCCCTCGCTCCTTGATTCT 60.619 55.000 0.00 0.00 0.00 2.40
2090 3361 0.105778 CCCCTCGCTCCTTGATTCTC 59.894 60.000 0.00 0.00 0.00 2.87
2091 3362 1.118838 CCCTCGCTCCTTGATTCTCT 58.881 55.000 0.00 0.00 0.00 3.10
2092 3363 2.311463 CCCTCGCTCCTTGATTCTCTA 58.689 52.381 0.00 0.00 0.00 2.43
2093 3364 2.896685 CCCTCGCTCCTTGATTCTCTAT 59.103 50.000 0.00 0.00 0.00 1.98
2094 3365 3.305950 CCCTCGCTCCTTGATTCTCTATG 60.306 52.174 0.00 0.00 0.00 2.23
2095 3366 3.316283 CTCGCTCCTTGATTCTCTATGC 58.684 50.000 0.00 0.00 0.00 3.14
2096 3367 2.695147 TCGCTCCTTGATTCTCTATGCA 59.305 45.455 0.00 0.00 0.00 3.96
2097 3368 3.323115 TCGCTCCTTGATTCTCTATGCAT 59.677 43.478 3.79 3.79 0.00 3.96
5805 8053 0.030638 ATGCACGTGTCAAGGTTTGC 59.969 50.000 18.38 0.00 0.00 3.68
5812 8060 5.753744 CACGTGTCAAGGTTTGCTAAATTA 58.246 37.500 7.58 0.00 0.00 1.40
5846 8094 5.670485 TCTGTGGCATGTTTAATACGAGAT 58.330 37.500 0.00 0.00 0.00 2.75
5895 8145 6.231211 TCTTTAGGCTACAGAAAGGTTTGAG 58.769 40.000 7.91 0.00 32.22 3.02
5904 8154 2.310052 AGAAAGGTTTGAGGCAGCCTAT 59.690 45.455 16.16 0.00 31.76 2.57
5996 8246 3.365265 GCCGTTGGCTGTGAAGGG 61.365 66.667 0.00 0.00 46.69 3.95
6014 8264 4.640771 AGGGAATGCAAGAAAGTGAGTA 57.359 40.909 0.00 0.00 0.00 2.59
6019 8269 6.374578 GGAATGCAAGAAAGTGAGTAGAAAC 58.625 40.000 0.00 0.00 0.00 2.78
6029 8279 6.920569 AAGTGAGTAGAAACGTGTTCATTT 57.079 33.333 11.33 0.00 0.00 2.32
6042 8292 4.321745 CGTGTTCATTTTGCAATACAGAGC 59.678 41.667 0.00 0.79 0.00 4.09
6047 8297 3.921119 TTTTGCAATACAGAGCCAGTG 57.079 42.857 0.00 0.00 0.00 3.66
6050 8300 3.138884 TGCAATACAGAGCCAGTGAAA 57.861 42.857 0.00 0.00 0.00 2.69
6058 8308 4.936891 ACAGAGCCAGTGAAATTTTGTTC 58.063 39.130 0.00 0.00 0.00 3.18
6081 8331 4.662278 TGCAAATTCCAGTTAGCTTACCT 58.338 39.130 0.00 0.00 0.00 3.08
6186 8436 1.271054 ACAAGCTGTGGGTGAGTGATC 60.271 52.381 0.00 0.00 0.00 2.92
6187 8437 1.002888 CAAGCTGTGGGTGAGTGATCT 59.997 52.381 0.00 0.00 0.00 2.75
6233 8483 6.360370 ACAGCTCTGTCCTATACAAGAAAA 57.640 37.500 0.00 0.00 40.24 2.29
6420 8670 2.068519 TGAGCTTATGTGCACGACTTG 58.931 47.619 13.13 2.43 34.99 3.16
6485 8929 9.547753 AATTATGTGCATAGTTGTTCTACTAGG 57.452 33.333 0.00 2.82 35.94 3.02
6531 8976 1.387756 GCTGTTGTGATGCGAAAATGC 59.612 47.619 0.00 0.00 0.00 3.56
6555 9000 5.965334 CGACATATGTGGCATTAACACTTTC 59.035 40.000 14.43 0.00 39.52 2.62
6614 9059 5.636903 AAGATACTCCTGTATGTGGCATT 57.363 39.130 0.00 0.00 39.29 3.56
6631 9076 3.429881 GGCATTGACACTTTTTAAGCTGC 59.570 43.478 0.00 0.00 0.00 5.25
6649 9094 6.287589 AGCTGCAGTAGTATTTACTGAACT 57.712 37.500 16.64 7.96 45.69 3.01
6697 9142 8.724229 TCTGCATATTATAATCTTGTGCACATC 58.276 33.333 22.39 0.00 36.33 3.06
6721 9167 1.667236 TGGTATTGCAGAATGAGGCG 58.333 50.000 0.00 0.00 39.69 5.52
6736 9182 3.780173 GCGGCTCTGGAGGAAGCT 61.780 66.667 0.00 0.00 0.00 3.74
6748 9194 1.220477 GGAAGCTGAGGACTCTGGC 59.780 63.158 8.07 8.49 0.00 4.85
6847 9293 2.362120 GGCAGCCTGCTGGTGATT 60.362 61.111 17.55 0.00 45.48 2.57
6907 9353 4.131088 GACCTCACCGCCGACCTC 62.131 72.222 0.00 0.00 0.00 3.85
6995 9441 6.802608 TGAACATACCGTTTATACTGAGAGG 58.197 40.000 0.00 0.00 38.19 3.69
7059 9506 9.969001 ATAGGTCCTAGACAAAGAGAGATATAC 57.031 37.037 4.57 0.00 33.68 1.47
7074 9524 8.086522 AGAGAGATATACTAGTTCGTCTGAGTC 58.913 40.741 0.00 0.02 0.00 3.36
7147 9598 3.067461 TGGCAGCGACAGTTGTTTTTAAT 59.933 39.130 0.00 0.00 0.00 1.40
7178 9629 9.286946 GTTAATTAATCCGTAGACTGATATCCG 57.713 37.037 0.31 0.00 0.00 4.18
7179 9630 7.463961 AATTAATCCGTAGACTGATATCCGT 57.536 36.000 0.00 0.00 0.00 4.69
7180 9631 4.768130 AATCCGTAGACTGATATCCGTG 57.232 45.455 4.33 0.00 0.00 4.94
7181 9632 3.480505 TCCGTAGACTGATATCCGTGA 57.519 47.619 4.33 0.00 0.00 4.35
7298 9794 6.549364 TCTCTGTTGGTTTGTGTTTTATCCAT 59.451 34.615 0.00 0.00 0.00 3.41
7309 9805 7.475771 TGTGTTTTATCCATTTTCACTTTGC 57.524 32.000 0.00 0.00 0.00 3.68
7330 9840 4.021280 TGCATGCTGTTGTGTTTTATCCAT 60.021 37.500 20.33 0.00 0.00 3.41
7331 9841 4.931002 GCATGCTGTTGTGTTTTATCCATT 59.069 37.500 11.37 0.00 0.00 3.16
7334 9844 6.841443 TGCTGTTGTGTTTTATCCATTTTG 57.159 33.333 0.00 0.00 0.00 2.44
7375 9888 7.287950 TGATTTAATCGTTTGTTTCACTCTCG 58.712 34.615 0.23 0.00 0.00 4.04
7379 9892 1.525619 CGTTTGTTTCACTCTCGGGTC 59.474 52.381 0.00 0.00 0.00 4.46
7385 9898 3.134081 TGTTTCACTCTCGGGTCTTCTTT 59.866 43.478 0.00 0.00 0.00 2.52
7392 9905 2.104111 TCTCGGGTCTTCTTTTCTTGCA 59.896 45.455 0.00 0.00 0.00 4.08
7393 9906 3.077359 CTCGGGTCTTCTTTTCTTGCAT 58.923 45.455 0.00 0.00 0.00 3.96
7394 9907 3.074412 TCGGGTCTTCTTTTCTTGCATC 58.926 45.455 0.00 0.00 0.00 3.91
7395 9908 2.813754 CGGGTCTTCTTTTCTTGCATCA 59.186 45.455 0.00 0.00 0.00 3.07
7396 9909 3.365364 CGGGTCTTCTTTTCTTGCATCAC 60.365 47.826 0.00 0.00 0.00 3.06
7397 9910 3.823304 GGGTCTTCTTTTCTTGCATCACT 59.177 43.478 0.00 0.00 0.00 3.41
7434 9995 0.394565 AGGCAGTGTGTTGGTCTCTC 59.605 55.000 0.00 0.00 0.00 3.20
7462 10023 0.734889 AACTGACTGTGTGTTGCAGC 59.265 50.000 0.00 0.00 37.47 5.25
7468 10029 0.306840 CTGTGTGTTGCAGCAGAGTG 59.693 55.000 2.40 0.00 32.05 3.51
7482 10043 1.144057 GAGTGGTGCGGGTATCTGG 59.856 63.158 0.00 0.00 0.00 3.86
7486 10047 2.584608 GTGCGGGTATCTGGTGCT 59.415 61.111 0.00 0.00 0.00 4.40
7490 10051 0.601311 GCGGGTATCTGGTGCTGATC 60.601 60.000 0.00 0.00 0.00 2.92
7497 10058 0.970427 TCTGGTGCTGATCACGGCTA 60.970 55.000 8.27 0.00 46.56 3.93
7498 10059 0.807667 CTGGTGCTGATCACGGCTAC 60.808 60.000 8.27 5.19 46.56 3.58
7499 10060 1.257750 TGGTGCTGATCACGGCTACT 61.258 55.000 8.27 0.00 46.56 2.57
7502 10063 1.299468 GCTGATCACGGCTACTCGG 60.299 63.158 0.00 0.00 44.22 4.63
7503 10064 1.725557 GCTGATCACGGCTACTCGGA 61.726 60.000 0.00 0.00 44.22 4.55
7505 10066 1.008309 GATCACGGCTACTCGGAGC 60.008 63.158 4.58 0.00 42.05 4.70
7507 10068 1.729470 ATCACGGCTACTCGGAGCAG 61.729 60.000 4.58 2.47 44.76 4.24
7508 10069 3.141488 ACGGCTACTCGGAGCAGG 61.141 66.667 4.58 0.00 44.76 4.85
7509 10070 4.577246 CGGCTACTCGGAGCAGGC 62.577 72.222 19.06 19.06 44.76 4.85
7510 10071 3.461773 GGCTACTCGGAGCAGGCA 61.462 66.667 22.81 0.00 44.76 4.75
7512 10073 2.496817 CTACTCGGAGCAGGCACC 59.503 66.667 4.58 0.00 0.00 5.01
7578 10183 1.347707 TGGCTACAGTTTGAGGTGAGG 59.652 52.381 0.00 0.00 0.00 3.86
7580 10185 2.237392 GGCTACAGTTTGAGGTGAGGAT 59.763 50.000 0.00 0.00 0.00 3.24
7585 10190 3.254060 CAGTTTGAGGTGAGGATGTACG 58.746 50.000 0.00 0.00 0.00 3.67
7586 10191 2.897969 AGTTTGAGGTGAGGATGTACGT 59.102 45.455 0.00 0.00 0.00 3.57
7587 10192 4.082408 CAGTTTGAGGTGAGGATGTACGTA 60.082 45.833 0.00 0.00 0.00 3.57
7588 10193 4.082354 AGTTTGAGGTGAGGATGTACGTAC 60.082 45.833 18.90 18.90 0.00 3.67
7589 10194 3.361281 TGAGGTGAGGATGTACGTACT 57.639 47.619 25.12 11.72 0.00 2.73
7590 10195 4.492494 TGAGGTGAGGATGTACGTACTA 57.508 45.455 25.12 12.85 0.00 1.82
7598 10203 7.040201 GGTGAGGATGTACGTACTAATAATGGA 60.040 40.741 25.12 3.26 0.00 3.41
7600 10205 8.737175 TGAGGATGTACGTACTAATAATGGATC 58.263 37.037 25.12 15.52 0.00 3.36
7606 10211 8.071967 TGTACGTACTAATAATGGATCGTGAAG 58.928 37.037 25.12 0.00 0.00 3.02
7611 10216 4.422073 AATAATGGATCGTGAAGCTGGA 57.578 40.909 0.00 0.00 0.00 3.86
7612 10217 2.029838 AATGGATCGTGAAGCTGGAC 57.970 50.000 0.00 0.00 0.00 4.02
7613 10218 0.179100 ATGGATCGTGAAGCTGGACG 60.179 55.000 10.75 10.75 36.91 4.79
7614 10219 1.215647 GGATCGTGAAGCTGGACGT 59.784 57.895 15.26 0.00 36.91 4.34
7615 10220 1.078759 GGATCGTGAAGCTGGACGTG 61.079 60.000 15.26 0.00 36.91 4.49
7616 10221 1.078759 GATCGTGAAGCTGGACGTGG 61.079 60.000 15.26 0.00 36.91 4.94
7617 10222 1.816863 ATCGTGAAGCTGGACGTGGT 61.817 55.000 15.26 3.51 36.91 4.16
7618 10223 1.594293 CGTGAAGCTGGACGTGGTT 60.594 57.895 9.14 0.00 0.00 3.67
7619 10224 1.831389 CGTGAAGCTGGACGTGGTTG 61.831 60.000 9.14 0.00 0.00 3.77
7620 10225 0.531974 GTGAAGCTGGACGTGGTTGA 60.532 55.000 0.00 0.00 0.00 3.18
7621 10226 0.249868 TGAAGCTGGACGTGGTTGAG 60.250 55.000 0.00 0.00 0.00 3.02
7622 10227 1.569479 GAAGCTGGACGTGGTTGAGC 61.569 60.000 0.00 0.00 0.00 4.26
7733 10351 1.880027 AGGCAAACGAAATCAGTGGAC 59.120 47.619 0.00 0.00 0.00 4.02
7763 10381 3.386726 TCAATCCTTCCTACCATACCACG 59.613 47.826 0.00 0.00 0.00 4.94
7764 10382 1.784358 TCCTTCCTACCATACCACGG 58.216 55.000 0.00 0.00 0.00 4.94
7765 10383 1.288633 TCCTTCCTACCATACCACGGA 59.711 52.381 0.00 0.00 0.00 4.69
7766 10384 2.112998 CCTTCCTACCATACCACGGAA 58.887 52.381 0.00 0.00 33.14 4.30
7767 10385 2.102588 CCTTCCTACCATACCACGGAAG 59.897 54.545 8.91 8.91 46.44 3.46
7768 10386 4.448866 CCTTCCTACCATACCACGGAAGT 61.449 52.174 13.45 0.00 45.79 3.01
7782 10400 4.189639 ACGGAAGTGAATCCTCTAACAC 57.810 45.455 0.00 0.00 46.97 3.32
7783 10401 3.056035 ACGGAAGTGAATCCTCTAACACC 60.056 47.826 0.00 0.00 46.97 4.16
7784 10402 3.679083 CGGAAGTGAATCCTCTAACACCC 60.679 52.174 0.00 0.00 37.34 4.61
7785 10403 3.519913 GGAAGTGAATCCTCTAACACCCT 59.480 47.826 0.00 0.00 36.50 4.34
7786 10404 4.019231 GGAAGTGAATCCTCTAACACCCTT 60.019 45.833 0.00 0.00 36.50 3.95
7787 10405 4.828072 AGTGAATCCTCTAACACCCTTC 57.172 45.455 0.00 0.00 34.33 3.46
7788 10406 3.519913 AGTGAATCCTCTAACACCCTTCC 59.480 47.826 0.00 0.00 34.33 3.46
7789 10407 2.500098 TGAATCCTCTAACACCCTTCCG 59.500 50.000 0.00 0.00 0.00 4.30
7790 10408 2.249309 ATCCTCTAACACCCTTCCGT 57.751 50.000 0.00 0.00 0.00 4.69
7791 10409 2.019807 TCCTCTAACACCCTTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
7792 10410 1.897802 TCCTCTAACACCCTTCCGTTC 59.102 52.381 0.00 0.00 0.00 3.95
7793 10411 1.900486 CCTCTAACACCCTTCCGTTCT 59.100 52.381 0.00 0.00 0.00 3.01
7794 10412 2.302157 CCTCTAACACCCTTCCGTTCTT 59.698 50.000 0.00 0.00 0.00 2.52
7795 10413 3.586892 CTCTAACACCCTTCCGTTCTTC 58.413 50.000 0.00 0.00 0.00 2.87
7796 10414 2.967201 TCTAACACCCTTCCGTTCTTCA 59.033 45.455 0.00 0.00 0.00 3.02
7797 10415 1.963172 AACACCCTTCCGTTCTTCAC 58.037 50.000 0.00 0.00 0.00 3.18
7798 10416 1.129058 ACACCCTTCCGTTCTTCACT 58.871 50.000 0.00 0.00 0.00 3.41
7799 10417 1.489230 ACACCCTTCCGTTCTTCACTT 59.511 47.619 0.00 0.00 0.00 3.16
7800 10418 2.143925 CACCCTTCCGTTCTTCACTTC 58.856 52.381 0.00 0.00 0.00 3.01
7801 10419 2.047830 ACCCTTCCGTTCTTCACTTCT 58.952 47.619 0.00 0.00 0.00 2.85
7802 10420 3.006537 CACCCTTCCGTTCTTCACTTCTA 59.993 47.826 0.00 0.00 0.00 2.10
7803 10421 3.838903 ACCCTTCCGTTCTTCACTTCTAT 59.161 43.478 0.00 0.00 0.00 1.98
7804 10422 5.021458 ACCCTTCCGTTCTTCACTTCTATA 58.979 41.667 0.00 0.00 0.00 1.31
7805 10423 5.661759 ACCCTTCCGTTCTTCACTTCTATAT 59.338 40.000 0.00 0.00 0.00 0.86
7806 10424 5.986135 CCCTTCCGTTCTTCACTTCTATATG 59.014 44.000 0.00 0.00 0.00 1.78
7807 10425 6.183360 CCCTTCCGTTCTTCACTTCTATATGA 60.183 42.308 0.00 0.00 0.00 2.15
7808 10426 7.437748 CCTTCCGTTCTTCACTTCTATATGAT 58.562 38.462 0.00 0.00 0.00 2.45
7809 10427 7.928706 CCTTCCGTTCTTCACTTCTATATGATT 59.071 37.037 0.00 0.00 0.00 2.57
7810 10428 9.967346 CTTCCGTTCTTCACTTCTATATGATTA 57.033 33.333 0.00 0.00 0.00 1.75
7812 10430 9.967346 TCCGTTCTTCACTTCTATATGATTAAG 57.033 33.333 0.00 0.00 0.00 1.85
7813 10431 9.197694 CCGTTCTTCACTTCTATATGATTAAGG 57.802 37.037 0.00 0.00 0.00 2.69
7814 10432 8.704234 CGTTCTTCACTTCTATATGATTAAGGC 58.296 37.037 0.00 0.00 0.00 4.35
7815 10433 9.771534 GTTCTTCACTTCTATATGATTAAGGCT 57.228 33.333 0.00 0.00 0.00 4.58
7931 10549 7.713750 TCTCAATAGTAACTATGTACAGTGCC 58.286 38.462 0.33 0.00 0.00 5.01
7932 10550 7.560262 TCTCAATAGTAACTATGTACAGTGCCT 59.440 37.037 0.33 0.00 0.00 4.75
7933 10551 8.756486 TCAATAGTAACTATGTACAGTGCCTA 57.244 34.615 0.33 0.02 0.00 3.93
7934 10552 8.627403 TCAATAGTAACTATGTACAGTGCCTAC 58.373 37.037 0.33 0.00 0.00 3.18
7935 10553 8.630917 CAATAGTAACTATGTACAGTGCCTACT 58.369 37.037 0.33 7.10 37.75 2.57
7936 10554 8.763984 ATAGTAACTATGTACAGTGCCTACTT 57.236 34.615 0.33 0.00 34.07 2.24
7937 10555 9.857656 ATAGTAACTATGTACAGTGCCTACTTA 57.142 33.333 0.33 0.00 34.07 2.24
7938 10556 8.585471 AGTAACTATGTACAGTGCCTACTTAA 57.415 34.615 0.33 0.00 34.07 1.85
7939 10557 9.028284 AGTAACTATGTACAGTGCCTACTTAAA 57.972 33.333 0.33 0.00 34.07 1.52
7940 10558 9.813446 GTAACTATGTACAGTGCCTACTTAAAT 57.187 33.333 0.33 0.00 34.07 1.40
7943 10561 9.417561 ACTATGTACAGTGCCTACTTAAATAGA 57.582 33.333 0.33 0.00 34.07 1.98
7967 10585 9.751542 AGATAATACAGTGTTTGCTACAGTATC 57.248 33.333 0.00 0.22 38.37 2.24
7968 10586 8.888579 ATAATACAGTGTTTGCTACAGTATCC 57.111 34.615 0.00 0.00 38.37 2.59
7969 10587 4.617253 ACAGTGTTTGCTACAGTATCCA 57.383 40.909 0.00 0.00 38.37 3.41
7970 10588 5.165961 ACAGTGTTTGCTACAGTATCCAT 57.834 39.130 0.00 0.00 38.37 3.41
7971 10589 4.937620 ACAGTGTTTGCTACAGTATCCATG 59.062 41.667 0.00 0.00 38.37 3.66
7972 10590 5.178061 CAGTGTTTGCTACAGTATCCATGA 58.822 41.667 0.00 0.00 38.37 3.07
7973 10591 5.063944 CAGTGTTTGCTACAGTATCCATGAC 59.936 44.000 0.00 0.00 38.37 3.06
7974 10592 5.046304 AGTGTTTGCTACAGTATCCATGACT 60.046 40.000 0.00 0.00 38.65 3.41
7975 10593 5.643777 GTGTTTGCTACAGTATCCATGACTT 59.356 40.000 0.00 0.00 37.45 3.01
7976 10594 6.149474 GTGTTTGCTACAGTATCCATGACTTT 59.851 38.462 0.00 0.00 37.45 2.66
7977 10595 6.714810 TGTTTGCTACAGTATCCATGACTTTT 59.285 34.615 0.00 0.00 31.68 2.27
7978 10596 6.985188 TTGCTACAGTATCCATGACTTTTC 57.015 37.500 0.00 0.00 0.00 2.29
7979 10597 6.299805 TGCTACAGTATCCATGACTTTTCT 57.700 37.500 0.00 0.00 0.00 2.52
7980 10598 6.711277 TGCTACAGTATCCATGACTTTTCTT 58.289 36.000 0.00 0.00 0.00 2.52
7981 10599 7.168219 TGCTACAGTATCCATGACTTTTCTTT 58.832 34.615 0.00 0.00 0.00 2.52
7982 10600 7.665559 TGCTACAGTATCCATGACTTTTCTTTT 59.334 33.333 0.00 0.00 0.00 2.27
7983 10601 7.965107 GCTACAGTATCCATGACTTTTCTTTTG 59.035 37.037 0.00 0.00 0.00 2.44
7984 10602 7.823745 ACAGTATCCATGACTTTTCTTTTGT 57.176 32.000 0.00 0.00 0.00 2.83
7985 10603 7.651808 ACAGTATCCATGACTTTTCTTTTGTG 58.348 34.615 0.00 0.00 0.00 3.33
7986 10604 7.285401 ACAGTATCCATGACTTTTCTTTTGTGT 59.715 33.333 0.00 0.00 0.00 3.72
7987 10605 8.137437 CAGTATCCATGACTTTTCTTTTGTGTT 58.863 33.333 0.00 0.00 0.00 3.32
7988 10606 8.695456 AGTATCCATGACTTTTCTTTTGTGTTT 58.305 29.630 0.00 0.00 0.00 2.83
7989 10607 9.313118 GTATCCATGACTTTTCTTTTGTGTTTT 57.687 29.630 0.00 0.00 0.00 2.43
7991 10609 8.696410 TCCATGACTTTTCTTTTGTGTTTTAC 57.304 30.769 0.00 0.00 0.00 2.01
7992 10610 8.307483 TCCATGACTTTTCTTTTGTGTTTTACA 58.693 29.630 0.00 0.00 37.56 2.41
8006 10624 5.875930 GTGTTTTACACTAGTTTGCACTGT 58.124 37.500 0.00 0.00 45.27 3.55
8007 10625 7.007313 GTGTTTTACACTAGTTTGCACTGTA 57.993 36.000 0.00 0.00 45.27 2.74
8008 10626 7.123830 GTGTTTTACACTAGTTTGCACTGTAG 58.876 38.462 0.00 0.00 45.27 2.74
8009 10627 5.917541 TTTACACTAGTTTGCACTGTAGC 57.082 39.130 0.00 0.00 34.06 3.58
8010 10628 3.753294 ACACTAGTTTGCACTGTAGCT 57.247 42.857 0.00 0.00 34.06 3.32
8011 10629 4.866508 ACACTAGTTTGCACTGTAGCTA 57.133 40.909 0.00 0.00 34.06 3.32
8012 10630 5.407407 ACACTAGTTTGCACTGTAGCTAT 57.593 39.130 0.00 0.00 34.06 2.97
8013 10631 5.171476 ACACTAGTTTGCACTGTAGCTATG 58.829 41.667 0.00 0.00 34.06 2.23
8014 10632 5.171476 CACTAGTTTGCACTGTAGCTATGT 58.829 41.667 0.00 0.00 34.06 2.29
8015 10633 5.639506 CACTAGTTTGCACTGTAGCTATGTT 59.360 40.000 0.00 0.00 34.06 2.71
8016 10634 6.811665 CACTAGTTTGCACTGTAGCTATGTTA 59.188 38.462 0.00 0.00 34.06 2.41
8017 10635 7.009631 CACTAGTTTGCACTGTAGCTATGTTAG 59.990 40.741 0.00 0.62 34.06 2.34
8018 10636 6.037786 AGTTTGCACTGTAGCTATGTTAGA 57.962 37.500 0.00 0.00 34.99 2.10
8019 10637 6.102663 AGTTTGCACTGTAGCTATGTTAGAG 58.897 40.000 0.00 0.00 34.99 2.43
8020 10638 4.655762 TGCACTGTAGCTATGTTAGAGG 57.344 45.455 0.00 0.00 34.99 3.69
8021 10639 4.278310 TGCACTGTAGCTATGTTAGAGGA 58.722 43.478 0.00 0.00 34.99 3.71
8022 10640 4.895889 TGCACTGTAGCTATGTTAGAGGAT 59.104 41.667 0.00 0.00 34.99 3.24
8023 10641 5.010112 TGCACTGTAGCTATGTTAGAGGATC 59.990 44.000 0.00 0.00 34.99 3.36
8024 10642 5.565834 GCACTGTAGCTATGTTAGAGGATCC 60.566 48.000 2.48 2.48 33.66 3.36
8025 10643 5.536538 CACTGTAGCTATGTTAGAGGATCCA 59.463 44.000 15.82 0.00 33.66 3.41
8026 10644 5.536916 ACTGTAGCTATGTTAGAGGATCCAC 59.463 44.000 15.82 8.01 33.66 4.02
8027 10645 5.706447 TGTAGCTATGTTAGAGGATCCACT 58.294 41.667 16.41 16.41 33.66 4.00
8028 10646 6.136857 TGTAGCTATGTTAGAGGATCCACTT 58.863 40.000 17.39 5.40 33.66 3.16
8029 10647 5.799827 AGCTATGTTAGAGGATCCACTTC 57.200 43.478 17.39 11.20 33.66 3.01
8030 10648 4.591072 AGCTATGTTAGAGGATCCACTTCC 59.409 45.833 17.39 8.65 33.66 3.46
8031 10649 4.262678 GCTATGTTAGAGGATCCACTTCCC 60.263 50.000 17.39 6.30 36.35 3.97
8032 10650 2.478292 TGTTAGAGGATCCACTTCCCC 58.522 52.381 17.39 3.98 36.35 4.81
8033 10651 2.225779 TGTTAGAGGATCCACTTCCCCA 60.226 50.000 17.39 6.39 36.35 4.96
8034 10652 3.049344 GTTAGAGGATCCACTTCCCCAT 58.951 50.000 17.39 0.00 36.35 4.00
8035 10653 4.232091 GTTAGAGGATCCACTTCCCCATA 58.768 47.826 17.39 0.00 36.35 2.74
8036 10654 2.695585 AGAGGATCCACTTCCCCATAC 58.304 52.381 15.82 0.00 36.35 2.39
8037 10655 2.251338 AGAGGATCCACTTCCCCATACT 59.749 50.000 15.82 0.00 36.35 2.12
8038 10656 3.049344 GAGGATCCACTTCCCCATACTT 58.951 50.000 15.82 0.00 36.35 2.24
8039 10657 3.049344 AGGATCCACTTCCCCATACTTC 58.951 50.000 15.82 0.00 36.35 3.01
8040 10658 2.106684 GGATCCACTTCCCCATACTTCC 59.893 54.545 6.95 0.00 0.00 3.46
8041 10659 1.591768 TCCACTTCCCCATACTTCCC 58.408 55.000 0.00 0.00 0.00 3.97
8042 10660 0.551396 CCACTTCCCCATACTTCCCC 59.449 60.000 0.00 0.00 0.00 4.81
8043 10661 1.295020 CACTTCCCCATACTTCCCCA 58.705 55.000 0.00 0.00 0.00 4.96
8044 10662 1.852965 CACTTCCCCATACTTCCCCAT 59.147 52.381 0.00 0.00 0.00 4.00
8045 10663 3.053077 CACTTCCCCATACTTCCCCATA 58.947 50.000 0.00 0.00 0.00 2.74
8046 10664 3.053826 ACTTCCCCATACTTCCCCATAC 58.946 50.000 0.00 0.00 0.00 2.39
8047 10665 1.724545 TCCCCATACTTCCCCATACG 58.275 55.000 0.00 0.00 0.00 3.06
8048 10666 1.221007 TCCCCATACTTCCCCATACGA 59.779 52.381 0.00 0.00 0.00 3.43
8049 10667 1.346722 CCCCATACTTCCCCATACGAC 59.653 57.143 0.00 0.00 0.00 4.34
8050 10668 2.043992 CCCATACTTCCCCATACGACA 58.956 52.381 0.00 0.00 0.00 4.35
8051 10669 2.224209 CCCATACTTCCCCATACGACAC 60.224 54.545 0.00 0.00 0.00 3.67
8052 10670 2.224209 CCATACTTCCCCATACGACACC 60.224 54.545 0.00 0.00 0.00 4.16
8053 10671 2.234896 TACTTCCCCATACGACACCA 57.765 50.000 0.00 0.00 0.00 4.17
8054 10672 0.611714 ACTTCCCCATACGACACCAC 59.388 55.000 0.00 0.00 0.00 4.16
8055 10673 0.611200 CTTCCCCATACGACACCACA 59.389 55.000 0.00 0.00 0.00 4.17
8056 10674 0.322322 TTCCCCATACGACACCACAC 59.678 55.000 0.00 0.00 0.00 3.82
8057 10675 1.078708 CCCCATACGACACCACACC 60.079 63.158 0.00 0.00 0.00 4.16
8058 10676 1.674637 CCCATACGACACCACACCA 59.325 57.895 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.450609 AGTATTAACTATGCCCGCCG 57.549 50.000 0.00 0.00 32.84 6.46
19 20 9.871238 ATAGTTATCAAGTATTAACTATGCCCG 57.129 33.333 12.25 0.00 41.46 6.13
35 36 5.492895 TCACGAGGGCAAAATAGTTATCAA 58.507 37.500 0.00 0.00 0.00 2.57
45 46 2.552315 GTTCTCATTCACGAGGGCAAAA 59.448 45.455 0.00 0.00 33.59 2.44
46 47 2.151202 GTTCTCATTCACGAGGGCAAA 58.849 47.619 0.00 0.00 33.59 3.68
53 54 2.661594 CGACACTGTTCTCATTCACGA 58.338 47.619 0.00 0.00 0.00 4.35
61 62 2.658707 GCACGGCGACACTGTTCTC 61.659 63.158 16.62 0.00 34.87 2.87
65 66 0.531090 TTTTAGCACGGCGACACTGT 60.531 50.000 16.62 0.00 38.94 3.55
86 89 6.977213 ACAAAATGTAGTTAATGGTTTCGCT 58.023 32.000 0.00 0.00 0.00 4.93
88 91 6.521821 CCGACAAAATGTAGTTAATGGTTTCG 59.478 38.462 0.00 0.00 0.00 3.46
147 150 5.122707 TGGATATACATTCCAAAGCCACA 57.877 39.130 0.00 0.00 40.29 4.17
182 185 1.901591 TCCAGTTCCGTTAGACGTCT 58.098 50.000 23.66 23.66 40.58 4.18
238 242 4.709397 TGGAAAGTGGGCCTTTATACATTG 59.291 41.667 4.53 0.00 43.47 2.82
270 274 1.135888 GCCGATTTAAAGAAACGGCGT 60.136 47.619 23.79 6.77 45.84 5.68
276 280 4.667161 CGCGTTACTGCCGATTTAAAGAAA 60.667 41.667 0.00 0.00 0.00 2.52
289 293 2.474712 GGAAGTGCGCGTTACTGC 59.525 61.111 16.74 14.98 0.00 4.40
334 338 3.487536 CGACGTTGCATGCTTTTAATCA 58.512 40.909 20.33 0.00 0.00 2.57
398 402 2.164338 GAGAAGGAGTCGACCTCTTGT 58.836 52.381 20.91 17.86 39.62 3.16
406 410 1.749638 GCGGGAGAGAAGGAGTCGA 60.750 63.158 0.00 0.00 0.00 4.20
428 432 1.002274 GAGAGAAGGCTGGGAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
429 433 1.002792 AGAGAGAAGGCTGGGAGGG 59.997 63.158 0.00 0.00 0.00 4.30
436 440 1.666209 GCAGAGCGAGAGAGAAGGCT 61.666 60.000 0.00 0.00 38.70 4.58
437 441 1.226945 GCAGAGCGAGAGAGAAGGC 60.227 63.158 0.00 0.00 0.00 4.35
438 442 0.381801 GAGCAGAGCGAGAGAGAAGG 59.618 60.000 0.00 0.00 0.00 3.46
441 445 2.468670 GCGAGCAGAGCGAGAGAGA 61.469 63.158 0.00 0.00 0.00 3.10
463 475 4.179579 GATGTTCTTGCGGGCGGC 62.180 66.667 10.44 10.44 43.96 6.53
486 1308 6.700081 CGAATCGGACAAATTGGTCTCTATTA 59.300 38.462 12.74 0.00 37.91 0.98
490 1312 3.262420 CGAATCGGACAAATTGGTCTCT 58.738 45.455 12.74 0.00 37.91 3.10
566 1407 4.023707 CACCTTTTAGTCCTTGCTGAAGTG 60.024 45.833 0.00 0.00 0.00 3.16
574 1415 4.703897 TGTGTCTCACCTTTTAGTCCTTG 58.296 43.478 0.00 0.00 32.73 3.61
591 1432 6.095440 AGCAAGGTGGAAACAATATATGTGTC 59.905 38.462 0.00 0.00 44.37 3.67
594 1435 7.613801 TGTAAGCAAGGTGGAAACAATATATGT 59.386 33.333 0.00 0.00 46.06 2.29
597 1438 8.410673 TTTGTAAGCAAGGTGGAAACAATATA 57.589 30.769 0.00 0.00 37.83 0.86
599 1440 6.716934 TTTGTAAGCAAGGTGGAAACAATA 57.283 33.333 0.00 0.00 37.83 1.90
609 1450 2.956333 GGGTCACTTTTGTAAGCAAGGT 59.044 45.455 0.00 0.00 35.82 3.50
622 1463 3.117131 AGAAAAAGATGGTGGGGTCACTT 60.117 43.478 0.00 0.00 43.17 3.16
666 1507 0.034616 GTGGATGCAGGCTAGCTAGG 59.965 60.000 22.10 6.99 34.99 3.02
667 1508 0.755079 TGTGGATGCAGGCTAGCTAG 59.245 55.000 16.84 16.84 34.99 3.42
669 1510 1.525923 CTGTGGATGCAGGCTAGCT 59.474 57.895 15.72 0.00 34.99 3.32
670 1511 4.137879 CTGTGGATGCAGGCTAGC 57.862 61.111 6.04 6.04 33.11 3.42
676 1524 4.051167 TGGCCCCTGTGGATGCAG 62.051 66.667 0.00 0.00 35.39 4.41
678 1526 4.052518 ACTGGCCCCTGTGGATGC 62.053 66.667 0.00 0.00 35.39 3.91
691 1539 0.179111 ATATGCGGACACGTCACTGG 60.179 55.000 0.00 0.00 43.45 4.00
692 1540 1.640428 AATATGCGGACACGTCACTG 58.360 50.000 0.00 0.00 43.45 3.66
693 1541 1.999735 CAAATATGCGGACACGTCACT 59.000 47.619 0.00 0.00 43.45 3.41
694 1542 1.529010 GCAAATATGCGGACACGTCAC 60.529 52.381 0.00 0.00 43.83 3.67
728 1875 5.291971 CGATATGATATGGCGATTGATGGA 58.708 41.667 0.00 0.00 0.00 3.41
751 1898 2.477845 ATTGGGTGAATTGGCTTTGC 57.522 45.000 0.00 0.00 0.00 3.68
756 1903 4.935205 GGACTTTTAATTGGGTGAATTGGC 59.065 41.667 0.00 0.00 35.74 4.52
757 1904 6.358974 AGGACTTTTAATTGGGTGAATTGG 57.641 37.500 0.00 0.00 35.74 3.16
758 1905 7.670364 AGAAGGACTTTTAATTGGGTGAATTG 58.330 34.615 0.00 0.00 35.74 2.32
823 2003 1.195347 CGATGCTTCTACTGCTGTCG 58.805 55.000 0.00 0.00 34.89 4.35
871 2051 1.656095 GAAATCTTCCGTGAGCGTGAG 59.344 52.381 0.00 0.00 36.15 3.51
872 2052 1.671850 GGAAATCTTCCGTGAGCGTGA 60.672 52.381 0.00 0.00 40.59 4.35
873 2053 0.721718 GGAAATCTTCCGTGAGCGTG 59.278 55.000 0.00 0.00 40.59 5.34
874 2054 3.139029 GGAAATCTTCCGTGAGCGT 57.861 52.632 0.00 0.00 40.59 5.07
1004 2221 2.095252 GGAGAGGCAAGTCGTTCGC 61.095 63.158 0.00 0.00 0.00 4.70
1005 2222 1.446272 GGGAGAGGCAAGTCGTTCG 60.446 63.158 0.00 0.00 0.00 3.95
1006 2223 1.079057 GGGGAGAGGCAAGTCGTTC 60.079 63.158 0.00 0.00 0.00 3.95
1007 2224 1.536662 AGGGGAGAGGCAAGTCGTT 60.537 57.895 0.00 0.00 0.00 3.85
1031 2248 2.737376 GTGTTCACGAGCGGGGTC 60.737 66.667 0.00 0.00 0.00 4.46
1032 2249 4.309950 GGTGTTCACGAGCGGGGT 62.310 66.667 0.00 0.00 0.00 4.95
1038 2255 1.301716 CTGGGGTGGTGTTCACGAG 60.302 63.158 0.00 0.00 46.96 4.18
1039 2256 2.825982 CTGGGGTGGTGTTCACGA 59.174 61.111 0.00 0.00 46.96 4.35
1041 2258 2.597510 GGCTGGGGTGGTGTTCAC 60.598 66.667 0.00 0.00 45.34 3.18
1042 2259 2.468868 ATGGCTGGGGTGGTGTTCA 61.469 57.895 0.00 0.00 0.00 3.18
1043 2260 1.978617 CATGGCTGGGGTGGTGTTC 60.979 63.158 0.00 0.00 0.00 3.18
1044 2261 2.118076 CATGGCTGGGGTGGTGTT 59.882 61.111 0.00 0.00 0.00 3.32
1045 2262 3.983420 CCATGGCTGGGGTGGTGT 61.983 66.667 0.00 0.00 39.04 4.16
1563 2824 0.395724 GGGAATGCATTTCGGGGAGT 60.396 55.000 14.33 0.00 34.98 3.85
1707 2968 4.243270 CTCTAACCACGAAACTAGTTGGG 58.757 47.826 9.34 11.02 0.00 4.12
1723 2984 7.445945 ACCAGAATTATGCATCTACCTCTAAC 58.554 38.462 0.19 0.00 0.00 2.34
1819 3084 0.033504 CTCACGGCACAGTACCAACT 59.966 55.000 0.00 0.00 35.91 3.16
1953 3224 1.745489 CGCCCTGCCAAAGTAGTCC 60.745 63.158 0.00 0.00 0.00 3.85
2001 3272 0.804989 CCTTGAACATCTTCGCCCAC 59.195 55.000 0.00 0.00 0.00 4.61
2055 3326 0.322546 GGGGTGAACCAGTAAGGCAG 60.323 60.000 1.16 0.00 43.14 4.85
2056 3327 0.770557 AGGGGTGAACCAGTAAGGCA 60.771 55.000 1.16 0.00 43.14 4.75
2057 3328 0.035343 GAGGGGTGAACCAGTAAGGC 60.035 60.000 1.16 0.00 43.14 4.35
2058 3329 0.249398 CGAGGGGTGAACCAGTAAGG 59.751 60.000 1.16 0.00 42.91 2.69
2059 3330 0.391263 GCGAGGGGTGAACCAGTAAG 60.391 60.000 1.16 0.00 42.91 2.34
2060 3331 0.834687 AGCGAGGGGTGAACCAGTAA 60.835 55.000 1.16 0.00 42.91 2.24
2062 3333 2.526873 AGCGAGGGGTGAACCAGT 60.527 61.111 1.16 0.00 42.91 4.00
2064 3335 3.319198 GGAGCGAGGGGTGAACCA 61.319 66.667 1.16 0.00 42.91 3.67
2065 3336 2.593956 AAGGAGCGAGGGGTGAACC 61.594 63.158 0.00 0.00 39.11 3.62
2066 3337 1.376037 CAAGGAGCGAGGGGTGAAC 60.376 63.158 0.00 0.00 0.00 3.18
2067 3338 0.909610 ATCAAGGAGCGAGGGGTGAA 60.910 55.000 0.00 0.00 0.00 3.18
2068 3339 0.909610 AATCAAGGAGCGAGGGGTGA 60.910 55.000 0.00 0.00 0.00 4.02
2069 3340 0.462759 GAATCAAGGAGCGAGGGGTG 60.463 60.000 0.00 0.00 0.00 4.61
2070 3341 0.618968 AGAATCAAGGAGCGAGGGGT 60.619 55.000 0.00 0.00 0.00 4.95
2072 3343 1.118838 AGAGAATCAAGGAGCGAGGG 58.881 55.000 0.00 0.00 37.82 4.30
2073 3344 3.860378 GCATAGAGAATCAAGGAGCGAGG 60.860 52.174 0.00 0.00 37.82 4.63
2076 3347 3.103447 TGCATAGAGAATCAAGGAGCG 57.897 47.619 0.00 0.00 37.82 5.03
2077 3348 4.387598 ACATGCATAGAGAATCAAGGAGC 58.612 43.478 0.00 0.00 37.82 4.70
2080 3351 7.117956 CACTCATACATGCATAGAGAATCAAGG 59.882 40.741 18.66 0.00 37.82 3.61
2081 3352 7.656542 ACACTCATACATGCATAGAGAATCAAG 59.343 37.037 18.66 4.60 37.82 3.02
2084 3355 7.440556 ACAACACTCATACATGCATAGAGAATC 59.559 37.037 18.66 0.00 0.00 2.52
2087 3358 6.044682 CACAACACTCATACATGCATAGAGA 58.955 40.000 18.66 7.18 0.00 3.10
2089 3360 5.733676 ACACAACACTCATACATGCATAGA 58.266 37.500 0.00 0.00 0.00 1.98
2090 3361 6.426980 AACACAACACTCATACATGCATAG 57.573 37.500 0.00 0.00 0.00 2.23
2091 3362 6.429385 TCAAACACAACACTCATACATGCATA 59.571 34.615 0.00 0.00 0.00 3.14
2092 3363 5.241285 TCAAACACAACACTCATACATGCAT 59.759 36.000 0.00 0.00 0.00 3.96
2093 3364 4.578105 TCAAACACAACACTCATACATGCA 59.422 37.500 0.00 0.00 0.00 3.96
2094 3365 5.107109 TCAAACACAACACTCATACATGC 57.893 39.130 0.00 0.00 0.00 4.06
2095 3366 9.333497 CTAATTCAAACACAACACTCATACATG 57.667 33.333 0.00 0.00 0.00 3.21
2096 3367 9.283768 TCTAATTCAAACACAACACTCATACAT 57.716 29.630 0.00 0.00 0.00 2.29
2097 3368 8.669946 TCTAATTCAAACACAACACTCATACA 57.330 30.769 0.00 0.00 0.00 2.29
5805 8053 6.064717 CCACAGAAAGGAGGGGATAATTTAG 58.935 44.000 0.00 0.00 0.00 1.85
5812 8060 0.846427 TGCCACAGAAAGGAGGGGAT 60.846 55.000 0.00 0.00 0.00 3.85
5846 8094 6.774170 AGTTCAATGCAGGCATTAGAATATCA 59.226 34.615 18.20 2.62 43.92 2.15
5858 8106 2.159324 GCCTAAAGAGTTCAATGCAGGC 60.159 50.000 0.00 0.00 40.43 4.85
5895 8145 5.570320 TCCTTTATTATTGGATAGGCTGCC 58.430 41.667 11.65 11.65 0.00 4.85
5904 8154 4.413520 AGAGCCAGCTCCTTTATTATTGGA 59.586 41.667 15.87 0.00 43.70 3.53
5982 8232 0.244721 GCATTCCCTTCACAGCCAAC 59.755 55.000 0.00 0.00 0.00 3.77
5996 8246 6.074005 CGTTTCTACTCACTTTCTTGCATTC 58.926 40.000 0.00 0.00 0.00 2.67
6014 8264 6.269315 TGTATTGCAAAATGAACACGTTTCT 58.731 32.000 1.71 0.00 0.00 2.52
6019 8269 4.321745 GCTCTGTATTGCAAAATGAACACG 59.678 41.667 1.71 0.00 0.00 4.49
6029 8279 2.857186 TCACTGGCTCTGTATTGCAA 57.143 45.000 0.00 0.00 0.00 4.08
6058 8308 4.702131 AGGTAAGCTAACTGGAATTTGCAG 59.298 41.667 15.47 15.47 41.93 4.41
6081 8331 9.696917 CTCTGCATTATCTGTACATAATACACA 57.303 33.333 0.00 0.00 29.39 3.72
6204 8454 6.791867 TGTATAGGACAGAGCTGTACAAAT 57.208 37.500 14.82 9.94 46.74 2.32
6233 8483 6.888632 AGAAATTAAACATCAGTCTGAGCCAT 59.111 34.615 8.82 0.00 0.00 4.40
6485 8929 7.891183 TGAACTACTTTCTACAGAGCATTTC 57.109 36.000 0.00 0.00 34.97 2.17
6531 8976 5.484173 AAGTGTTAATGCCACATATGTCG 57.516 39.130 5.07 0.00 35.24 4.35
6614 9059 5.123227 ACTACTGCAGCTTAAAAAGTGTCA 58.877 37.500 15.27 0.00 0.00 3.58
6649 9094 5.664457 AGATATATGCAGGGATGTGCTGATA 59.336 40.000 0.00 0.00 44.32 2.15
6678 9123 7.201848 CCAACCAGATGTGCACAAGATTATAAT 60.202 37.037 25.72 3.07 0.00 1.28
6681 9126 4.400251 CCAACCAGATGTGCACAAGATTAT 59.600 41.667 25.72 5.72 0.00 1.28
6697 9142 3.379372 CCTCATTCTGCAATACCAACCAG 59.621 47.826 0.00 0.00 0.00 4.00
6721 9167 1.521616 CTCAGCTTCCTCCAGAGCC 59.478 63.158 0.00 0.00 0.00 4.70
6736 9182 0.967887 CCTTCTCGCCAGAGTCCTCA 60.968 60.000 0.00 0.00 44.65 3.86
6748 9194 1.139654 TCCTTGATGGATGCCTTCTCG 59.860 52.381 0.00 0.00 40.56 4.04
6757 9203 3.009916 ACTTGTCTGCTTCCTTGATGGAT 59.990 43.478 0.00 0.00 45.68 3.41
6907 9353 1.591059 CATCGCCTGGAGCTTCTCG 60.591 63.158 0.00 0.00 40.39 4.04
6944 9390 2.181021 CAGGTACTCCGACGCCAC 59.819 66.667 0.00 0.00 34.60 5.01
6995 9441 3.036959 TCCCCTCTCCCCTCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
7059 9506 3.181512 GGTAACCGACTCAGACGAACTAG 60.182 52.174 0.00 0.00 0.00 2.57
7174 9625 3.303938 ACCTTCTCATCTCATCACGGAT 58.696 45.455 0.00 0.00 0.00 4.18
7175 9626 2.739943 ACCTTCTCATCTCATCACGGA 58.260 47.619 0.00 0.00 0.00 4.69
7176 9627 3.533606 AACCTTCTCATCTCATCACGG 57.466 47.619 0.00 0.00 0.00 4.94
7177 9628 3.620374 CCAAACCTTCTCATCTCATCACG 59.380 47.826 0.00 0.00 0.00 4.35
7178 9629 3.944015 CCCAAACCTTCTCATCTCATCAC 59.056 47.826 0.00 0.00 0.00 3.06
7179 9630 3.623203 GCCCAAACCTTCTCATCTCATCA 60.623 47.826 0.00 0.00 0.00 3.07
7180 9631 2.948315 GCCCAAACCTTCTCATCTCATC 59.052 50.000 0.00 0.00 0.00 2.92
7181 9632 2.357569 GGCCCAAACCTTCTCATCTCAT 60.358 50.000 0.00 0.00 0.00 2.90
7210 9665 0.179001 TGTCTCAGTCCACAGGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
7250 9742 8.635765 AGACATGGTATAAGTTTCAACAACAT 57.364 30.769 0.00 0.00 0.00 2.71
7298 9794 3.617706 CACAACAGCATGCAAAGTGAAAA 59.382 39.130 21.98 0.00 42.53 2.29
7309 9805 7.292292 CAAAATGGATAAAACACAACAGCATG 58.708 34.615 0.00 0.00 46.00 4.06
7330 9840 5.003692 TCAACAGCATACAAAGTGCAAAA 57.996 34.783 0.00 0.00 44.87 2.44
7331 9841 4.645762 TCAACAGCATACAAAGTGCAAA 57.354 36.364 0.00 0.00 44.87 3.68
7334 9844 7.253420 CGATTAAATCAACAGCATACAAAGTGC 60.253 37.037 0.00 0.00 42.81 4.40
7375 9888 3.823304 AGTGATGCAAGAAAAGAAGACCC 59.177 43.478 0.00 0.00 0.00 4.46
7434 9995 0.732880 CACAGTCAGTTACCTCGGCG 60.733 60.000 0.00 0.00 0.00 6.46
7447 10008 0.585357 CTCTGCTGCAACACACAGTC 59.415 55.000 3.02 0.00 37.47 3.51
7454 10015 2.188829 GCACCACTCTGCTGCAACA 61.189 57.895 3.02 0.00 34.06 3.33
7462 10023 0.179100 CAGATACCCGCACCACTCTG 60.179 60.000 0.00 0.00 0.00 3.35
7468 10029 2.513897 GCACCAGATACCCGCACC 60.514 66.667 0.00 0.00 0.00 5.01
7482 10043 0.867753 CGAGTAGCCGTGATCAGCAC 60.868 60.000 9.38 5.81 44.21 4.40
7486 10047 1.725557 GCTCCGAGTAGCCGTGATCA 61.726 60.000 0.00 0.00 36.45 2.92
7490 10051 2.103143 CTGCTCCGAGTAGCCGTG 59.897 66.667 0.09 0.00 42.05 4.94
7578 10183 8.232513 TCACGATCCATTATTAGTACGTACATC 58.767 37.037 26.55 15.44 0.00 3.06
7580 10185 7.495135 TCACGATCCATTATTAGTACGTACA 57.505 36.000 26.55 8.35 0.00 2.90
7585 10190 6.366332 CCAGCTTCACGATCCATTATTAGTAC 59.634 42.308 0.00 0.00 0.00 2.73
7586 10191 6.266786 TCCAGCTTCACGATCCATTATTAGTA 59.733 38.462 0.00 0.00 0.00 1.82
7587 10192 5.070446 TCCAGCTTCACGATCCATTATTAGT 59.930 40.000 0.00 0.00 0.00 2.24
7588 10193 5.406780 GTCCAGCTTCACGATCCATTATTAG 59.593 44.000 0.00 0.00 0.00 1.73
7589 10194 5.297547 GTCCAGCTTCACGATCCATTATTA 58.702 41.667 0.00 0.00 0.00 0.98
7590 10195 4.130118 GTCCAGCTTCACGATCCATTATT 58.870 43.478 0.00 0.00 0.00 1.40
7598 10203 1.079819 CCACGTCCAGCTTCACGAT 60.080 57.895 18.76 3.15 39.38 3.73
7600 10205 1.594293 AACCACGTCCAGCTTCACG 60.594 57.895 11.78 11.78 41.90 4.35
7606 10211 2.280797 TGCTCAACCACGTCCAGC 60.281 61.111 0.00 0.00 0.00 4.85
7613 10218 3.041940 CCGTCCGTGCTCAACCAC 61.042 66.667 0.00 0.00 0.00 4.16
7614 10219 3.542676 ACCGTCCGTGCTCAACCA 61.543 61.111 0.00 0.00 0.00 3.67
7615 10220 3.041940 CACCGTCCGTGCTCAACC 61.042 66.667 0.00 0.00 35.18 3.77
7616 10221 3.041940 CCACCGTCCGTGCTCAAC 61.042 66.667 0.00 0.00 41.53 3.18
7617 10222 3.542676 ACCACCGTCCGTGCTCAA 61.543 61.111 0.00 0.00 41.53 3.02
7618 10223 4.293648 CACCACCGTCCGTGCTCA 62.294 66.667 0.00 0.00 41.53 4.26
7682 10300 4.658786 AGGGAAGGGCAGGTCGGT 62.659 66.667 0.00 0.00 0.00 4.69
7684 10302 2.269241 GAAGGGAAGGGCAGGTCG 59.731 66.667 0.00 0.00 0.00 4.79
7691 10309 0.259938 CCATCTTGGGAAGGGAAGGG 59.740 60.000 0.00 0.00 32.67 3.95
7733 10351 4.956700 TGGTAGGAAGGATTGAGTGACTAG 59.043 45.833 0.00 0.00 0.00 2.57
7763 10381 3.519913 AGGGTGTTAGAGGATTCACTTCC 59.480 47.826 0.00 0.00 35.90 3.46
7764 10382 4.828072 AGGGTGTTAGAGGATTCACTTC 57.172 45.455 0.00 0.00 0.00 3.01
7765 10383 4.019231 GGAAGGGTGTTAGAGGATTCACTT 60.019 45.833 0.00 0.00 0.00 3.16
7766 10384 3.519913 GGAAGGGTGTTAGAGGATTCACT 59.480 47.826 0.00 0.00 0.00 3.41
7767 10385 3.679083 CGGAAGGGTGTTAGAGGATTCAC 60.679 52.174 0.00 0.00 0.00 3.18
7768 10386 2.500098 CGGAAGGGTGTTAGAGGATTCA 59.500 50.000 0.00 0.00 0.00 2.57
7769 10387 2.500504 ACGGAAGGGTGTTAGAGGATTC 59.499 50.000 0.00 0.00 0.00 2.52
7770 10388 2.547990 ACGGAAGGGTGTTAGAGGATT 58.452 47.619 0.00 0.00 0.00 3.01
7771 10389 2.249309 ACGGAAGGGTGTTAGAGGAT 57.751 50.000 0.00 0.00 0.00 3.24
7772 10390 1.897802 GAACGGAAGGGTGTTAGAGGA 59.102 52.381 0.00 0.00 0.00 3.71
7773 10391 1.900486 AGAACGGAAGGGTGTTAGAGG 59.100 52.381 0.00 0.00 0.00 3.69
7774 10392 3.006537 TGAAGAACGGAAGGGTGTTAGAG 59.993 47.826 0.00 0.00 0.00 2.43
7775 10393 2.967201 TGAAGAACGGAAGGGTGTTAGA 59.033 45.455 0.00 0.00 0.00 2.10
7776 10394 3.064931 GTGAAGAACGGAAGGGTGTTAG 58.935 50.000 0.00 0.00 0.00 2.34
7777 10395 2.701951 AGTGAAGAACGGAAGGGTGTTA 59.298 45.455 0.00 0.00 0.00 2.41
7778 10396 1.489230 AGTGAAGAACGGAAGGGTGTT 59.511 47.619 0.00 0.00 0.00 3.32
7779 10397 1.129058 AGTGAAGAACGGAAGGGTGT 58.871 50.000 0.00 0.00 0.00 4.16
7780 10398 2.143925 GAAGTGAAGAACGGAAGGGTG 58.856 52.381 0.00 0.00 0.00 4.61
7781 10399 2.047830 AGAAGTGAAGAACGGAAGGGT 58.952 47.619 0.00 0.00 0.00 4.34
7782 10400 2.841442 AGAAGTGAAGAACGGAAGGG 57.159 50.000 0.00 0.00 0.00 3.95
7783 10401 6.806751 TCATATAGAAGTGAAGAACGGAAGG 58.193 40.000 0.00 0.00 0.00 3.46
7784 10402 8.879342 AATCATATAGAAGTGAAGAACGGAAG 57.121 34.615 0.00 0.00 0.00 3.46
7786 10404 9.967346 CTTAATCATATAGAAGTGAAGAACGGA 57.033 33.333 0.00 0.00 0.00 4.69
7787 10405 9.197694 CCTTAATCATATAGAAGTGAAGAACGG 57.802 37.037 0.00 0.00 0.00 4.44
7788 10406 8.704234 GCCTTAATCATATAGAAGTGAAGAACG 58.296 37.037 0.00 0.00 0.00 3.95
7789 10407 9.771534 AGCCTTAATCATATAGAAGTGAAGAAC 57.228 33.333 0.00 0.00 0.00 3.01
7905 10523 8.361139 GGCACTGTACATAGTTACTATTGAGAT 58.639 37.037 1.59 0.00 0.00 2.75
7906 10524 7.560262 AGGCACTGTACATAGTTACTATTGAGA 59.440 37.037 1.59 0.00 37.18 3.27
7907 10525 7.717568 AGGCACTGTACATAGTTACTATTGAG 58.282 38.462 1.59 0.00 37.18 3.02
7908 10526 7.655521 AGGCACTGTACATAGTTACTATTGA 57.344 36.000 1.59 0.00 37.18 2.57
7909 10527 8.630917 AGTAGGCACTGTACATAGTTACTATTG 58.369 37.037 1.59 0.00 41.52 1.90
7910 10528 8.763984 AGTAGGCACTGTACATAGTTACTATT 57.236 34.615 1.59 0.00 41.52 1.73
7911 10529 8.763984 AAGTAGGCACTGTACATAGTTACTAT 57.236 34.615 0.00 0.00 41.52 2.12
7912 10530 9.685276 TTAAGTAGGCACTGTACATAGTTACTA 57.315 33.333 0.00 0.00 41.52 1.82
7913 10531 8.585471 TTAAGTAGGCACTGTACATAGTTACT 57.415 34.615 0.00 0.00 41.52 2.24
7914 10532 9.813446 ATTTAAGTAGGCACTGTACATAGTTAC 57.187 33.333 0.00 0.00 41.52 2.50
7917 10535 9.417561 TCTATTTAAGTAGGCACTGTACATAGT 57.582 33.333 0.00 0.00 41.52 2.12
7941 10559 9.751542 GATACTGTAGCAAACACTGTATTATCT 57.248 33.333 0.00 0.00 39.61 1.98
7942 10560 8.979574 GGATACTGTAGCAAACACTGTATTATC 58.020 37.037 5.36 0.00 39.61 1.75
7943 10561 8.482943 TGGATACTGTAGCAAACACTGTATTAT 58.517 33.333 5.36 0.00 39.61 1.28
7944 10562 7.842982 TGGATACTGTAGCAAACACTGTATTA 58.157 34.615 5.36 0.00 39.61 0.98
7945 10563 6.707290 TGGATACTGTAGCAAACACTGTATT 58.293 36.000 5.36 0.00 39.61 1.89
7946 10564 6.294361 TGGATACTGTAGCAAACACTGTAT 57.706 37.500 5.36 5.14 41.15 2.29
7947 10565 5.731957 TGGATACTGTAGCAAACACTGTA 57.268 39.130 5.36 0.00 35.60 2.74
7948 10566 4.617253 TGGATACTGTAGCAAACACTGT 57.383 40.909 5.36 0.00 33.45 3.55
7949 10567 5.063944 GTCATGGATACTGTAGCAAACACTG 59.936 44.000 5.36 0.00 33.45 3.66
7950 10568 5.046304 AGTCATGGATACTGTAGCAAACACT 60.046 40.000 5.36 0.00 33.45 3.55
7951 10569 5.178797 AGTCATGGATACTGTAGCAAACAC 58.821 41.667 5.36 0.00 33.45 3.32
7952 10570 5.420725 AGTCATGGATACTGTAGCAAACA 57.579 39.130 5.36 0.00 36.42 2.83
7953 10571 6.743575 AAAGTCATGGATACTGTAGCAAAC 57.256 37.500 5.36 0.00 37.61 2.93
7954 10572 7.168219 AGAAAAGTCATGGATACTGTAGCAAA 58.832 34.615 5.36 0.00 37.61 3.68
7955 10573 6.711277 AGAAAAGTCATGGATACTGTAGCAA 58.289 36.000 5.36 0.00 37.61 3.91
7956 10574 6.299805 AGAAAAGTCATGGATACTGTAGCA 57.700 37.500 5.36 0.00 37.61 3.49
7957 10575 7.617041 AAAGAAAAGTCATGGATACTGTAGC 57.383 36.000 0.00 0.00 37.61 3.58
7958 10576 9.003658 ACAAAAGAAAAGTCATGGATACTGTAG 57.996 33.333 0.00 0.00 37.61 2.74
7959 10577 8.783093 CACAAAAGAAAAGTCATGGATACTGTA 58.217 33.333 0.00 0.00 37.61 2.74
7960 10578 7.285401 ACACAAAAGAAAAGTCATGGATACTGT 59.715 33.333 0.00 0.00 37.61 3.55
7961 10579 7.651808 ACACAAAAGAAAAGTCATGGATACTG 58.348 34.615 0.00 0.00 37.61 2.74
7962 10580 7.823745 ACACAAAAGAAAAGTCATGGATACT 57.176 32.000 0.00 0.00 37.61 2.12
7963 10581 8.871686 AAACACAAAAGAAAAGTCATGGATAC 57.128 30.769 0.00 0.00 0.00 2.24
7965 10583 9.313118 GTAAAACACAAAAGAAAAGTCATGGAT 57.687 29.630 0.00 0.00 0.00 3.41
7966 10584 8.307483 TGTAAAACACAAAAGAAAAGTCATGGA 58.693 29.630 0.00 0.00 32.95 3.41
7967 10585 8.472683 TGTAAAACACAAAAGAAAAGTCATGG 57.527 30.769 0.00 0.00 32.95 3.66
7984 10602 6.238266 GCTACAGTGCAAACTAGTGTAAAACA 60.238 38.462 0.00 0.00 34.53 2.83
7985 10603 6.018180 AGCTACAGTGCAAACTAGTGTAAAAC 60.018 38.462 0.00 0.00 34.53 2.43
7986 10604 6.053005 AGCTACAGTGCAAACTAGTGTAAAA 58.947 36.000 0.00 0.00 34.53 1.52
7987 10605 5.607477 AGCTACAGTGCAAACTAGTGTAAA 58.393 37.500 0.00 0.00 34.53 2.01
7988 10606 5.209818 AGCTACAGTGCAAACTAGTGTAA 57.790 39.130 0.00 0.00 34.53 2.41
7989 10607 4.866508 AGCTACAGTGCAAACTAGTGTA 57.133 40.909 0.00 0.00 33.91 2.90
7990 10608 3.753294 AGCTACAGTGCAAACTAGTGT 57.247 42.857 0.00 0.00 35.90 3.55
7991 10609 5.171476 ACATAGCTACAGTGCAAACTAGTG 58.829 41.667 0.00 0.00 34.99 2.74
7992 10610 5.407407 ACATAGCTACAGTGCAAACTAGT 57.593 39.130 0.00 0.00 34.99 2.57
7993 10611 7.258441 TCTAACATAGCTACAGTGCAAACTAG 58.742 38.462 0.00 0.00 34.99 2.57
7994 10612 7.165460 TCTAACATAGCTACAGTGCAAACTA 57.835 36.000 0.00 0.00 34.99 2.24
7995 10613 6.037786 TCTAACATAGCTACAGTGCAAACT 57.962 37.500 0.00 0.00 34.99 2.66
7996 10614 5.292101 CCTCTAACATAGCTACAGTGCAAAC 59.708 44.000 0.00 0.00 34.99 2.93
7997 10615 5.186992 TCCTCTAACATAGCTACAGTGCAAA 59.813 40.000 0.00 0.00 34.99 3.68
7998 10616 4.709886 TCCTCTAACATAGCTACAGTGCAA 59.290 41.667 0.00 0.00 34.99 4.08
7999 10617 4.278310 TCCTCTAACATAGCTACAGTGCA 58.722 43.478 0.00 0.00 34.99 4.57
8000 10618 4.920640 TCCTCTAACATAGCTACAGTGC 57.079 45.455 0.00 0.00 0.00 4.40
8001 10619 5.536538 TGGATCCTCTAACATAGCTACAGTG 59.463 44.000 14.23 0.00 0.00 3.66
8002 10620 5.536916 GTGGATCCTCTAACATAGCTACAGT 59.463 44.000 14.23 0.00 0.00 3.55
8003 10621 5.772672 AGTGGATCCTCTAACATAGCTACAG 59.227 44.000 14.73 0.00 0.00 2.74
8004 10622 5.706447 AGTGGATCCTCTAACATAGCTACA 58.294 41.667 14.73 0.00 0.00 2.74
8005 10623 6.294843 GGAAGTGGATCCTCTAACATAGCTAC 60.295 46.154 16.52 0.00 36.50 3.58
8006 10624 5.775701 GGAAGTGGATCCTCTAACATAGCTA 59.224 44.000 16.52 0.00 36.50 3.32
8007 10625 4.591072 GGAAGTGGATCCTCTAACATAGCT 59.409 45.833 16.52 0.00 36.50 3.32
8008 10626 4.262678 GGGAAGTGGATCCTCTAACATAGC 60.263 50.000 16.52 2.70 39.57 2.97
8009 10627 4.284746 GGGGAAGTGGATCCTCTAACATAG 59.715 50.000 16.52 0.00 36.98 2.23
8010 10628 4.232091 GGGGAAGTGGATCCTCTAACATA 58.768 47.826 16.52 0.00 36.98 2.29
8011 10629 3.049344 GGGGAAGTGGATCCTCTAACAT 58.951 50.000 16.52 1.06 36.98 2.71
8012 10630 2.225779 TGGGGAAGTGGATCCTCTAACA 60.226 50.000 16.52 10.28 40.90 2.41
8013 10631 2.478292 TGGGGAAGTGGATCCTCTAAC 58.522 52.381 16.52 13.01 40.90 2.34
8014 10632 2.961536 TGGGGAAGTGGATCCTCTAA 57.038 50.000 16.52 0.00 40.90 2.10
8015 10633 3.471306 AGTATGGGGAAGTGGATCCTCTA 59.529 47.826 16.52 1.33 40.90 2.43
8016 10634 2.251338 AGTATGGGGAAGTGGATCCTCT 59.749 50.000 14.23 12.34 40.90 3.69
8017 10635 2.695585 AGTATGGGGAAGTGGATCCTC 58.304 52.381 14.23 9.81 40.67 3.71
8018 10636 2.897823 AGTATGGGGAAGTGGATCCT 57.102 50.000 14.23 0.00 39.57 3.24
8019 10637 2.106684 GGAAGTATGGGGAAGTGGATCC 59.893 54.545 4.20 4.20 38.86 3.36
8020 10638 2.106684 GGGAAGTATGGGGAAGTGGATC 59.893 54.545 0.00 0.00 0.00 3.36
8021 10639 2.136026 GGGAAGTATGGGGAAGTGGAT 58.864 52.381 0.00 0.00 0.00 3.41
8022 10640 1.591768 GGGAAGTATGGGGAAGTGGA 58.408 55.000 0.00 0.00 0.00 4.02
8023 10641 0.551396 GGGGAAGTATGGGGAAGTGG 59.449 60.000 0.00 0.00 0.00 4.00
8024 10642 1.295020 TGGGGAAGTATGGGGAAGTG 58.705 55.000 0.00 0.00 0.00 3.16
8025 10643 2.303660 ATGGGGAAGTATGGGGAAGT 57.696 50.000 0.00 0.00 0.00 3.01
8026 10644 2.038557 CGTATGGGGAAGTATGGGGAAG 59.961 54.545 0.00 0.00 0.00 3.46
8027 10645 2.051692 CGTATGGGGAAGTATGGGGAA 58.948 52.381 0.00 0.00 0.00 3.97
8028 10646 1.221007 TCGTATGGGGAAGTATGGGGA 59.779 52.381 0.00 0.00 0.00 4.81
8029 10647 1.346722 GTCGTATGGGGAAGTATGGGG 59.653 57.143 0.00 0.00 0.00 4.96
8030 10648 2.043992 TGTCGTATGGGGAAGTATGGG 58.956 52.381 0.00 0.00 0.00 4.00
8031 10649 2.224209 GGTGTCGTATGGGGAAGTATGG 60.224 54.545 0.00 0.00 0.00 2.74
8032 10650 2.432874 TGGTGTCGTATGGGGAAGTATG 59.567 50.000 0.00 0.00 0.00 2.39
8033 10651 2.433239 GTGGTGTCGTATGGGGAAGTAT 59.567 50.000 0.00 0.00 0.00 2.12
8034 10652 1.826720 GTGGTGTCGTATGGGGAAGTA 59.173 52.381 0.00 0.00 0.00 2.24
8035 10653 0.611714 GTGGTGTCGTATGGGGAAGT 59.388 55.000 0.00 0.00 0.00 3.01
8036 10654 0.611200 TGTGGTGTCGTATGGGGAAG 59.389 55.000 0.00 0.00 0.00 3.46
8037 10655 0.322322 GTGTGGTGTCGTATGGGGAA 59.678 55.000 0.00 0.00 0.00 3.97
8038 10656 1.546589 GGTGTGGTGTCGTATGGGGA 61.547 60.000 0.00 0.00 0.00 4.81
8039 10657 1.078708 GGTGTGGTGTCGTATGGGG 60.079 63.158 0.00 0.00 0.00 4.96
8040 10658 0.672401 GTGGTGTGGTGTCGTATGGG 60.672 60.000 0.00 0.00 0.00 4.00
8041 10659 0.034198 TGTGGTGTGGTGTCGTATGG 59.966 55.000 0.00 0.00 0.00 2.74
8042 10660 1.144969 GTGTGGTGTGGTGTCGTATG 58.855 55.000 0.00 0.00 0.00 2.39
8043 10661 0.034337 GGTGTGGTGTGGTGTCGTAT 59.966 55.000 0.00 0.00 0.00 3.06
8044 10662 1.328430 TGGTGTGGTGTGGTGTCGTA 61.328 55.000 0.00 0.00 0.00 3.43
8045 10663 2.188469 GGTGTGGTGTGGTGTCGT 59.812 61.111 0.00 0.00 0.00 4.34
8046 10664 2.177580 GTGGTGTGGTGTGGTGTCG 61.178 63.158 0.00 0.00 0.00 4.35
8047 10665 1.078072 TGTGGTGTGGTGTGGTGTC 60.078 57.895 0.00 0.00 0.00 3.67
8048 10666 1.077787 CTGTGGTGTGGTGTGGTGT 60.078 57.895 0.00 0.00 0.00 4.16
8049 10667 2.480610 GCTGTGGTGTGGTGTGGTG 61.481 63.158 0.00 0.00 0.00 4.17
8050 10668 2.124320 GCTGTGGTGTGGTGTGGT 60.124 61.111 0.00 0.00 0.00 4.16
8051 10669 1.893808 GAGCTGTGGTGTGGTGTGG 60.894 63.158 0.00 0.00 0.00 4.17
8052 10670 2.246739 CGAGCTGTGGTGTGGTGTG 61.247 63.158 0.00 0.00 0.00 3.82
8053 10671 2.108976 CGAGCTGTGGTGTGGTGT 59.891 61.111 0.00 0.00 0.00 4.16
8054 10672 2.666190 CCGAGCTGTGGTGTGGTG 60.666 66.667 0.00 0.00 0.00 4.17
8055 10673 4.626081 GCCGAGCTGTGGTGTGGT 62.626 66.667 0.00 0.00 0.00 4.16
8131 10760 0.692756 GAGGAAGGAGGAGAAGGGGG 60.693 65.000 0.00 0.00 0.00 5.40
8139 10768 2.363361 GGTCGGGAGGAAGGAGGA 59.637 66.667 0.00 0.00 0.00 3.71
8140 10769 2.764547 GGGTCGGGAGGAAGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
8141 10770 2.764547 GGGGTCGGGAGGAAGGAG 60.765 72.222 0.00 0.00 0.00 3.69
8142 10771 4.410033 GGGGGTCGGGAGGAAGGA 62.410 72.222 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.