Multiple sequence alignment - TraesCS3A01G042500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G042500 chr3A 100.000 3251 0 0 1 3251 22807451 22804201 0.000000e+00 6004.0
1 TraesCS3A01G042500 chr3B 90.192 1509 108 21 902 2378 20378479 20379979 0.000000e+00 1930.0
2 TraesCS3A01G042500 chr3B 85.455 825 83 18 13 833 20377578 20378369 0.000000e+00 824.0
3 TraesCS3A01G042500 chr3B 85.150 633 88 1 993 1619 20277975 20278607 0.000000e+00 643.0
4 TraesCS3A01G042500 chr3B 85.086 637 82 3 2399 3023 4651424 4652059 3.540000e-179 638.0
5 TraesCS3A01G042500 chr3B 84.483 638 84 5 2399 3023 3750936 3751571 1.660000e-172 616.0
6 TraesCS3A01G042500 chr3B 83.394 554 83 5 1614 2165 20283787 20284333 3.740000e-139 505.0
7 TraesCS3A01G042500 chr3D 88.795 589 58 4 2409 2991 556024160 556023574 0.000000e+00 715.0
8 TraesCS3A01G042500 chr2D 88.194 576 60 4 2398 2966 83048108 83048682 0.000000e+00 680.0
9 TraesCS3A01G042500 chr2D 83.616 177 29 0 1393 1569 26537429 26537253 2.010000e-37 167.0
10 TraesCS3A01G042500 chr4D 86.010 629 71 8 2399 3015 67289246 67289869 0.000000e+00 658.0
11 TraesCS3A01G042500 chr1B 85.759 639 70 9 2407 3029 11410374 11409741 0.000000e+00 656.0
12 TraesCS3A01G042500 chr1B 84.520 646 84 11 2397 3030 685665172 685664531 2.750000e-175 625.0
13 TraesCS3A01G042500 chr2B 85.993 614 71 5 2399 2999 74196759 74197370 0.000000e+00 643.0
14 TraesCS3A01G042500 chr4A 84.820 639 80 10 2399 3022 665472673 665472037 7.660000e-176 627.0
15 TraesCS3A01G042500 chrUn 85.276 163 24 0 1393 1555 17151972 17151810 5.580000e-38 169.0
16 TraesCS3A01G042500 chrUn 85.276 163 24 0 1393 1555 292609958 292610120 5.580000e-38 169.0
17 TraesCS3A01G042500 chr2A 75.141 177 36 7 1785 1957 32231061 32230889 3.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G042500 chr3A 22804201 22807451 3250 True 6004 6004 100.0000 1 3251 1 chr3A.!!$R1 3250
1 TraesCS3A01G042500 chr3B 20377578 20379979 2401 False 1377 1930 87.8235 13 2378 2 chr3B.!!$F5 2365
2 TraesCS3A01G042500 chr3B 20277975 20278607 632 False 643 643 85.1500 993 1619 1 chr3B.!!$F3 626
3 TraesCS3A01G042500 chr3B 4651424 4652059 635 False 638 638 85.0860 2399 3023 1 chr3B.!!$F2 624
4 TraesCS3A01G042500 chr3B 3750936 3751571 635 False 616 616 84.4830 2399 3023 1 chr3B.!!$F1 624
5 TraesCS3A01G042500 chr3B 20283787 20284333 546 False 505 505 83.3940 1614 2165 1 chr3B.!!$F4 551
6 TraesCS3A01G042500 chr3D 556023574 556024160 586 True 715 715 88.7950 2409 2991 1 chr3D.!!$R1 582
7 TraesCS3A01G042500 chr2D 83048108 83048682 574 False 680 680 88.1940 2398 2966 1 chr2D.!!$F1 568
8 TraesCS3A01G042500 chr4D 67289246 67289869 623 False 658 658 86.0100 2399 3015 1 chr4D.!!$F1 616
9 TraesCS3A01G042500 chr1B 11409741 11410374 633 True 656 656 85.7590 2407 3029 1 chr1B.!!$R1 622
10 TraesCS3A01G042500 chr1B 685664531 685665172 641 True 625 625 84.5200 2397 3030 1 chr1B.!!$R2 633
11 TraesCS3A01G042500 chr2B 74196759 74197370 611 False 643 643 85.9930 2399 2999 1 chr2B.!!$F1 600
12 TraesCS3A01G042500 chr4A 665472037 665472673 636 True 627 627 84.8200 2399 3022 1 chr4A.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 885 0.035439 ATTGGTGTCGGTGCCCTTAG 60.035 55.0 0.0 0.0 0.0 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2720 2831 0.467474 ATGTCTCCGGCGGATCTGTA 60.467 55.0 31.23 14.5 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.124088 AGTTATAGCTTCATTTTCGCCAAG 57.876 37.500 0.00 0.00 0.00 3.61
36 37 1.462616 TCGCCAAGCTATGCATTGTT 58.537 45.000 3.54 0.00 0.00 2.83
45 46 5.051891 AGCTATGCATTGTTTGACTTCAC 57.948 39.130 3.54 0.00 0.00 3.18
46 47 3.848019 GCTATGCATTGTTTGACTTCACG 59.152 43.478 3.54 0.00 0.00 4.35
59 60 9.157104 TGTTTGACTTCACGCAAATTATATAGA 57.843 29.630 0.00 0.00 36.51 1.98
79 80 1.219124 CGTCTGCTATGTGTGGGCT 59.781 57.895 0.00 0.00 0.00 5.19
81 82 1.536922 CGTCTGCTATGTGTGGGCTAG 60.537 57.143 0.00 0.00 0.00 3.42
84 85 0.178767 TGCTATGTGTGGGCTAGCTG 59.821 55.000 15.72 0.00 38.89 4.24
87 88 2.300152 GCTATGTGTGGGCTAGCTGATA 59.700 50.000 15.72 0.00 35.95 2.15
101 102 7.445402 GGGCTAGCTGATATTTGTAAAAGATCA 59.555 37.037 15.72 9.08 0.00 2.92
139 140 0.390998 TGAATTGGTGCGATCGAGCA 60.391 50.000 21.57 16.32 45.96 4.26
169 170 1.675641 GTCGTGAGGCCCTTGCAAT 60.676 57.895 0.00 0.00 40.13 3.56
192 193 2.036992 CCAACAACATTGCAAAGGCCTA 59.963 45.455 5.16 0.00 40.13 3.93
195 196 3.164268 ACAACATTGCAAAGGCCTATGA 58.836 40.909 17.55 0.00 40.13 2.15
200 201 3.658757 TTGCAAAGGCCTATGAAACAC 57.341 42.857 5.16 0.00 40.13 3.32
201 202 2.591923 TGCAAAGGCCTATGAAACACA 58.408 42.857 5.16 0.00 40.13 3.72
204 205 3.740832 GCAAAGGCCTATGAAACACAAAC 59.259 43.478 5.16 0.00 0.00 2.93
206 207 2.858745 AGGCCTATGAAACACAAACGT 58.141 42.857 1.29 0.00 0.00 3.99
207 208 3.219281 AGGCCTATGAAACACAAACGTT 58.781 40.909 1.29 0.00 0.00 3.99
214 215 3.364062 TGAAACACAAACGTTATTGCGG 58.636 40.909 0.00 0.00 33.52 5.69
224 225 1.744456 CGTTATTGCGGAGGCCCTTTA 60.744 52.381 0.00 0.00 38.85 1.85
232 233 1.613255 CGGAGGCCCTTTACAACACAT 60.613 52.381 0.00 0.00 0.00 3.21
244 245 3.811722 ACAACACATACGACATTGCAG 57.188 42.857 0.00 0.00 0.00 4.41
247 248 4.274705 ACAACACATACGACATTGCAGAAA 59.725 37.500 0.00 0.00 0.00 2.52
248 249 4.668576 ACACATACGACATTGCAGAAAG 57.331 40.909 0.00 0.00 0.00 2.62
249 250 4.314961 ACACATACGACATTGCAGAAAGA 58.685 39.130 0.00 0.00 0.00 2.52
260 262 5.979517 ACATTGCAGAAAGAAAAGTAGCAAC 59.020 36.000 0.00 0.00 42.37 4.17
265 267 5.385617 CAGAAAGAAAAGTAGCAACGATGG 58.614 41.667 0.00 0.00 0.00 3.51
266 268 5.049405 CAGAAAGAAAAGTAGCAACGATGGT 60.049 40.000 2.16 2.16 41.03 3.55
282 284 1.548081 TGGTTGTTGCATGGATCAGG 58.452 50.000 0.00 0.00 0.00 3.86
284 286 1.180029 GTTGTTGCATGGATCAGGCT 58.820 50.000 6.14 0.00 41.96 4.58
289 291 1.530891 GCATGGATCAGGCTGCCAT 60.531 57.895 22.65 17.78 42.91 4.40
313 315 3.127589 TGGTAACACAGATGACGTTGTG 58.872 45.455 14.87 14.87 46.17 3.33
320 322 0.321653 AGATGACGTTGTGAAGGCCC 60.322 55.000 0.00 0.00 0.00 5.80
332 334 1.452145 GAAGGCCCTTTGCAACACGA 61.452 55.000 0.00 0.00 43.89 4.35
334 336 1.007387 GGCCCTTTGCAACACGAAG 60.007 57.895 0.00 0.00 43.89 3.79
377 379 3.001634 ACACGAATGATATTGCAGAAGCG 59.998 43.478 0.00 0.00 46.23 4.68
379 381 2.568100 GAATGATATTGCAGAAGCGCG 58.432 47.619 0.00 0.00 46.23 6.86
416 418 1.440145 GCTGCTCGGATTAGGTTGCC 61.440 60.000 0.00 0.00 0.00 4.52
440 442 0.743688 TGGCAACATGAACGCTGTTT 59.256 45.000 0.00 0.00 46.17 2.83
447 449 2.053627 CATGAACGCTGTTTTGAAGGC 58.946 47.619 0.00 0.00 0.00 4.35
448 450 0.383949 TGAACGCTGTTTTGAAGGCC 59.616 50.000 0.00 0.00 0.00 5.19
464 466 1.104577 GGCCCTTTTCAACACGGACA 61.105 55.000 0.00 0.00 0.00 4.02
480 482 1.607148 GGACAACGTTGCTAAGCCTTT 59.393 47.619 27.61 5.02 0.00 3.11
481 483 2.034179 GGACAACGTTGCTAAGCCTTTT 59.966 45.455 27.61 4.23 0.00 2.27
518 520 2.150390 TGTGAAGCATATGCAACACGT 58.850 42.857 31.67 13.54 45.09 4.49
519 521 2.095819 TGTGAAGCATATGCAACACGTG 60.096 45.455 31.67 15.48 45.09 4.49
524 526 0.804364 CATATGCAACACGTGTGGCT 59.196 50.000 39.61 28.90 45.12 4.75
550 552 1.081376 GCAGCAGCAAAGCTCTGTG 60.081 57.895 14.97 2.27 44.54 3.66
554 556 2.670934 AGCAAAGCTCTGTGGCCG 60.671 61.111 0.00 0.00 30.62 6.13
610 613 3.053019 ACTGTCAGAGGAGATGGATGAGA 60.053 47.826 6.91 0.00 0.00 3.27
615 618 4.077108 CAGAGGAGATGGATGAGAGAGAG 58.923 52.174 0.00 0.00 0.00 3.20
620 623 4.410099 GAGATGGATGAGAGAGAGATGGT 58.590 47.826 0.00 0.00 0.00 3.55
627 630 3.095332 TGAGAGAGAGATGGTGGTCAAG 58.905 50.000 0.00 0.00 0.00 3.02
628 631 1.830477 AGAGAGAGATGGTGGTCAAGC 59.170 52.381 0.00 0.00 0.00 4.01
630 633 0.615331 GAGAGATGGTGGTCAAGCCA 59.385 55.000 0.00 0.00 46.95 4.75
645 648 4.001248 CCACACATGGCGGTCAAT 57.999 55.556 0.00 0.00 39.82 2.57
688 691 5.204292 GGAAAGCTTTTCCCCAGATTAGAT 58.796 41.667 14.05 0.00 32.48 1.98
689 692 6.365520 GGAAAGCTTTTCCCCAGATTAGATA 58.634 40.000 14.05 0.00 32.48 1.98
690 693 6.488344 GGAAAGCTTTTCCCCAGATTAGATAG 59.512 42.308 14.05 0.00 32.48 2.08
691 694 5.574970 AGCTTTTCCCCAGATTAGATAGG 57.425 43.478 0.00 0.00 0.00 2.57
692 695 4.075682 GCTTTTCCCCAGATTAGATAGGC 58.924 47.826 0.00 0.00 0.00 3.93
693 696 4.657013 CTTTTCCCCAGATTAGATAGGCC 58.343 47.826 0.00 0.00 0.00 5.19
694 697 3.655972 TTCCCCAGATTAGATAGGCCT 57.344 47.619 11.78 11.78 0.00 5.19
695 698 3.655972 TCCCCAGATTAGATAGGCCTT 57.344 47.619 12.58 0.00 0.00 4.35
696 699 3.521727 TCCCCAGATTAGATAGGCCTTC 58.478 50.000 12.58 8.83 0.00 3.46
697 700 2.234908 CCCCAGATTAGATAGGCCTTCG 59.765 54.545 12.58 0.00 0.00 3.79
698 701 2.900546 CCCAGATTAGATAGGCCTTCGT 59.099 50.000 12.58 0.00 0.00 3.85
699 702 3.056465 CCCAGATTAGATAGGCCTTCGTC 60.056 52.174 12.58 7.54 0.00 4.20
700 703 3.829601 CCAGATTAGATAGGCCTTCGTCT 59.170 47.826 12.58 15.11 0.00 4.18
701 704 4.321601 CCAGATTAGATAGGCCTTCGTCTG 60.322 50.000 12.58 20.25 0.00 3.51
702 705 3.829601 AGATTAGATAGGCCTTCGTCTGG 59.170 47.826 12.58 0.00 0.00 3.86
703 706 3.308035 TTAGATAGGCCTTCGTCTGGA 57.692 47.619 12.58 3.69 0.00 3.86
704 707 2.390225 AGATAGGCCTTCGTCTGGAT 57.610 50.000 12.58 0.00 0.00 3.41
729 732 5.788450 AGTCTTCTGACACCTTGTATTGAG 58.212 41.667 0.00 0.00 45.20 3.02
768 771 1.070175 GTCAACGGAACCATGTTCACG 60.070 52.381 9.01 11.23 0.00 4.35
769 772 0.385473 CAACGGAACCATGTTCACGC 60.385 55.000 9.01 0.00 0.00 5.34
771 774 0.319083 ACGGAACCATGTTCACGCTA 59.681 50.000 9.01 0.00 0.00 4.26
787 790 6.764877 TCACGCTAGTTTTTCTAAGACTTG 57.235 37.500 0.00 0.00 0.00 3.16
849 885 0.035439 ATTGGTGTCGGTGCCCTTAG 60.035 55.000 0.00 0.00 0.00 2.18
852 888 0.828677 GGTGTCGGTGCCCTTAGTAT 59.171 55.000 0.00 0.00 0.00 2.12
853 889 2.034124 GGTGTCGGTGCCCTTAGTATA 58.966 52.381 0.00 0.00 0.00 1.47
854 890 2.223900 GGTGTCGGTGCCCTTAGTATAC 60.224 54.545 0.00 0.00 0.00 1.47
856 892 3.131755 GTGTCGGTGCCCTTAGTATACTT 59.868 47.826 11.40 0.00 0.00 2.24
859 895 2.288030 CGGTGCCCTTAGTATACTTCGG 60.288 54.545 11.40 11.37 0.00 4.30
860 896 2.036862 GGTGCCCTTAGTATACTTCGGG 59.963 54.545 24.59 24.59 37.32 5.14
861 897 2.697229 GTGCCCTTAGTATACTTCGGGT 59.303 50.000 27.12 3.83 36.90 5.28
862 898 3.133542 GTGCCCTTAGTATACTTCGGGTT 59.866 47.826 27.12 3.23 36.90 4.11
863 899 3.133362 TGCCCTTAGTATACTTCGGGTTG 59.867 47.826 27.12 12.41 36.90 3.77
864 900 3.493873 GCCCTTAGTATACTTCGGGTTGG 60.494 52.174 27.12 14.54 36.90 3.77
865 901 3.708121 CCCTTAGTATACTTCGGGTTGGT 59.292 47.826 22.25 0.00 32.68 3.67
866 902 4.162888 CCCTTAGTATACTTCGGGTTGGTT 59.837 45.833 22.25 0.00 32.68 3.67
869 905 6.982724 CCTTAGTATACTTCGGGTTGGTTAAG 59.017 42.308 11.40 3.92 0.00 1.85
873 909 6.665248 AGTATACTTCGGGTTGGTTAAGTACT 59.335 38.462 0.00 0.00 37.28 2.73
874 910 7.834181 AGTATACTTCGGGTTGGTTAAGTACTA 59.166 37.037 0.00 0.00 37.28 1.82
875 911 5.139435 ACTTCGGGTTGGTTAAGTACTAC 57.861 43.478 0.00 0.00 30.62 2.73
876 912 4.835056 ACTTCGGGTTGGTTAAGTACTACT 59.165 41.667 0.00 0.00 30.62 2.57
877 913 5.305386 ACTTCGGGTTGGTTAAGTACTACTT 59.695 40.000 6.68 6.68 41.97 2.24
878 914 5.138125 TCGGGTTGGTTAAGTACTACTTG 57.862 43.478 11.17 0.00 39.11 3.16
879 915 4.588528 TCGGGTTGGTTAAGTACTACTTGT 59.411 41.667 11.17 0.00 39.11 3.16
882 922 7.613801 TCGGGTTGGTTAAGTACTACTTGTATA 59.386 37.037 11.17 0.00 39.11 1.47
884 924 8.753133 GGGTTGGTTAAGTACTACTTGTATACT 58.247 37.037 11.17 0.00 39.11 2.12
889 929 9.958234 GGTTAAGTACTACTTGTATACTAAGCC 57.042 37.037 11.17 0.00 39.11 4.35
894 934 9.252635 AGTACTACTTGTATACTAAGCCAAAGT 57.747 33.333 4.17 6.15 33.23 2.66
907 947 7.399634 ACTAAGCCAAAGTTAGCCATAGTTAA 58.600 34.615 7.52 0.00 31.68 2.01
908 948 6.759497 AAGCCAAAGTTAGCCATAGTTAAG 57.241 37.500 0.00 0.00 0.00 1.85
911 951 6.822170 AGCCAAAGTTAGCCATAGTTAAGTAC 59.178 38.462 0.00 0.00 0.00 2.73
914 954 7.201496 CCAAAGTTAGCCATAGTTAAGTACGTG 60.201 40.741 0.00 0.00 0.00 4.49
915 955 6.521151 AGTTAGCCATAGTTAAGTACGTGT 57.479 37.500 0.00 0.00 0.00 4.49
916 956 6.558909 AGTTAGCCATAGTTAAGTACGTGTC 58.441 40.000 0.00 0.00 0.00 3.67
917 957 4.025015 AGCCATAGTTAAGTACGTGTCG 57.975 45.455 0.00 0.00 0.00 4.35
919 959 3.111098 CCATAGTTAAGTACGTGTCGGC 58.889 50.000 0.00 0.00 0.00 5.54
921 961 1.251251 AGTTAAGTACGTGTCGGCCT 58.749 50.000 0.00 0.00 0.00 5.19
922 962 1.068055 AGTTAAGTACGTGTCGGCCTG 60.068 52.381 0.00 0.00 0.00 4.85
924 964 1.819928 TAAGTACGTGTCGGCCTGTA 58.180 50.000 0.00 0.00 0.00 2.74
925 965 0.961019 AAGTACGTGTCGGCCTGTAA 59.039 50.000 0.00 0.00 0.00 2.41
926 966 1.180029 AGTACGTGTCGGCCTGTAAT 58.820 50.000 0.00 0.00 0.00 1.89
928 968 1.133790 GTACGTGTCGGCCTGTAATCT 59.866 52.381 0.00 0.00 0.00 2.40
929 969 0.108804 ACGTGTCGGCCTGTAATCTG 60.109 55.000 0.00 0.00 0.00 2.90
931 971 0.391130 GTGTCGGCCTGTAATCTGCA 60.391 55.000 0.00 0.00 0.00 4.41
933 973 1.065491 TGTCGGCCTGTAATCTGCAAT 60.065 47.619 0.00 0.00 0.00 3.56
962 1002 2.432628 CGACCGACCAGTTGAGCC 60.433 66.667 0.00 0.00 0.00 4.70
973 1013 2.951642 CCAGTTGAGCCAAAGAGACAAA 59.048 45.455 0.00 0.00 0.00 2.83
974 1014 3.243201 CCAGTTGAGCCAAAGAGACAAAC 60.243 47.826 0.00 0.00 0.00 2.93
975 1015 2.952310 AGTTGAGCCAAAGAGACAAACC 59.048 45.455 0.00 0.00 0.00 3.27
976 1016 2.952310 GTTGAGCCAAAGAGACAAACCT 59.048 45.455 0.00 0.00 0.00 3.50
979 1019 3.135712 TGAGCCAAAGAGACAAACCTACA 59.864 43.478 0.00 0.00 0.00 2.74
991 1031 3.830755 ACAAACCTACACTAGTCCACGAT 59.169 43.478 0.00 0.00 0.00 3.73
1005 1048 1.485397 CACGATCGAGCAGGATGAAG 58.515 55.000 24.34 0.00 39.69 3.02
1009 1052 2.123342 GATCGAGCAGGATGAAGTTCG 58.877 52.381 0.00 0.00 39.69 3.95
1028 1071 3.231889 CTGTGACCCAGTGCTCGCT 62.232 63.158 0.00 0.00 36.37 4.93
1163 1206 3.842923 CCACGAGCCGGCTGAGAT 61.843 66.667 38.41 10.09 0.00 2.75
1173 1216 2.024319 GGCTGAGATCATACGGCGC 61.024 63.158 6.90 0.00 39.04 6.53
1308 1351 1.217779 GAGCTGCACTCTGGAGGAC 59.782 63.158 1.02 0.00 42.62 3.85
1331 1374 3.119096 GTTCCTTGACTCGCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
1355 1398 1.073199 CCCCTCTGGACGCTTTTGT 59.927 57.895 0.00 0.00 35.39 2.83
1364 1407 2.241880 ACGCTTTTGTCGTCCGGTG 61.242 57.895 0.00 0.00 34.84 4.94
1365 1408 2.241880 CGCTTTTGTCGTCCGGTGT 61.242 57.895 0.00 0.00 0.00 4.16
1366 1409 0.940519 CGCTTTTGTCGTCCGGTGTA 60.941 55.000 0.00 0.00 0.00 2.90
1386 1429 2.582226 GATCGCGTCCGCATGTCA 60.582 61.111 12.58 0.00 42.06 3.58
1416 1465 0.741927 TGCTGATGATGCAGGTCACG 60.742 55.000 0.00 0.00 36.41 4.35
1725 1774 3.164011 CCGTGCTCGACGTTCGAC 61.164 66.667 10.21 5.12 44.82 4.20
1839 1888 3.499737 CACATCGGCGCCAAGGAC 61.500 66.667 28.98 0.00 0.00 3.85
1934 1983 2.279120 GACGGCGAGGCTGATCAG 60.279 66.667 18.84 18.84 38.46 2.90
2125 2174 1.079127 GACATGGAGGTGACGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
2172 2221 2.697761 TTCGAGGAAGGACGGCGAG 61.698 63.158 16.62 0.00 32.22 5.03
2213 2262 4.803426 CGTCAGGGAGGAGCACGC 62.803 72.222 0.00 0.00 0.00 5.34
2255 2304 1.079819 CGACGCTCCACTGAACCAT 60.080 57.895 0.00 0.00 0.00 3.55
2256 2305 1.354337 CGACGCTCCACTGAACCATG 61.354 60.000 0.00 0.00 0.00 3.66
2259 2308 1.642037 CGCTCCACTGAACCATGCAG 61.642 60.000 0.00 0.00 39.26 4.41
2263 2312 1.592400 CCACTGAACCATGCAGGCAG 61.592 60.000 0.00 0.00 43.14 4.85
2276 2325 2.031163 GGCAGCCTGTTCGAGTGT 59.969 61.111 3.29 0.00 0.00 3.55
2282 2336 1.079503 GCCTGTTCGAGTGTCATTCC 58.920 55.000 0.00 0.00 0.00 3.01
2288 2342 3.320826 TGTTCGAGTGTCATTCCTTCTCA 59.679 43.478 0.00 0.00 0.00 3.27
2293 2347 4.109050 GAGTGTCATTCCTTCTCATCGAC 58.891 47.826 0.00 0.00 0.00 4.20
2303 2357 3.741344 CCTTCTCATCGACTCGTTGTTTT 59.259 43.478 8.90 0.00 0.00 2.43
2304 2358 4.211374 CCTTCTCATCGACTCGTTGTTTTT 59.789 41.667 8.90 0.00 0.00 1.94
2305 2359 4.708868 TCTCATCGACTCGTTGTTTTTG 57.291 40.909 8.90 0.00 0.00 2.44
2306 2360 4.116961 TCTCATCGACTCGTTGTTTTTGT 58.883 39.130 8.90 0.00 0.00 2.83
2307 2361 4.026062 TCTCATCGACTCGTTGTTTTTGTG 60.026 41.667 8.90 0.00 0.00 3.33
2308 2362 3.866327 TCATCGACTCGTTGTTTTTGTGA 59.134 39.130 8.90 0.00 0.00 3.58
2344 2416 3.614092 ACGGCAGATGATTGAGTTTCAT 58.386 40.909 0.00 0.00 36.54 2.57
2368 2444 1.660560 GCAGCGGGCAGATTCATGTT 61.661 55.000 0.00 0.00 43.97 2.71
2491 2571 4.768130 ATTACATCCAGATCCGTAGACG 57.232 45.455 0.00 0.00 39.44 4.18
2501 2581 0.105593 TCCGTAGACGACCTAGCGAT 59.894 55.000 3.07 0.00 43.02 4.58
2518 2598 4.566004 AGCGATGACTACAAGCACTAAAA 58.434 39.130 0.00 0.00 36.63 1.52
2529 2609 1.000506 AGCACTAAAACGAGCCGAAGA 59.999 47.619 1.50 0.00 0.00 2.87
2603 2683 0.536687 AGACAGTCGGGAAGTCGTCA 60.537 55.000 0.00 0.00 37.36 4.35
2621 2701 1.980765 TCATGCTAAGGCCCCATAGAG 59.019 52.381 0.00 0.00 37.74 2.43
2666 2752 6.201044 CGCGGATTAAGAGTGTAGATCAAAAT 59.799 38.462 0.00 0.00 0.00 1.82
2718 2829 3.181447 ACAGATCCGAGCAAATCCATCAT 60.181 43.478 0.00 0.00 0.00 2.45
2720 2831 5.183969 CAGATCCGAGCAAATCCATCATAT 58.816 41.667 0.00 0.00 0.00 1.78
2739 2850 0.467474 TACAGATCCGCCGGAGACAT 60.467 55.000 13.12 0.00 34.05 3.06
2763 2874 1.477377 GCCACATGCCCACTGATGATA 60.477 52.381 0.00 0.00 0.00 2.15
2782 2893 1.112113 ACTAGACGCATCACCGGAAT 58.888 50.000 9.46 0.00 0.00 3.01
2793 2904 1.048724 CACCGGAATGGAGGCTAGGA 61.049 60.000 9.46 0.00 42.00 2.94
2823 2934 6.216456 AGACCTTTATTTCATCTTCAGGGAGT 59.784 38.462 0.00 0.00 0.00 3.85
2826 2937 5.677319 TTATTTCATCTTCAGGGAGTCGT 57.323 39.130 0.00 0.00 0.00 4.34
2830 2941 1.546029 CATCTTCAGGGAGTCGTCACA 59.454 52.381 0.00 0.00 0.00 3.58
2865 2978 1.774856 AGCAGGACACAAACCCTAACT 59.225 47.619 0.00 0.00 0.00 2.24
2869 2982 4.745783 GCAGGACACAAACCCTAACTAAGT 60.746 45.833 0.00 0.00 0.00 2.24
2902 3015 2.919602 TCTAAAAACAGAGCCCTCCCAT 59.080 45.455 0.00 0.00 0.00 4.00
2911 3024 2.998097 CCCTCCCATCGGCAAAGA 59.002 61.111 0.00 0.00 0.00 2.52
2912 3025 1.153086 CCCTCCCATCGGCAAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
2959 3072 1.392710 AAGGCCATACGAGACGGGAG 61.393 60.000 5.01 0.00 0.00 4.30
2991 3104 1.687612 CACCAGTGGGAGGCAGAAT 59.312 57.895 15.21 0.00 38.05 2.40
3006 3119 3.134804 GGCAGAATACCCTAGCTTCTTGA 59.865 47.826 0.00 0.00 0.00 3.02
3030 3143 1.605058 GGCGACTGGCTAGGTCAAGA 61.605 60.000 0.85 0.00 42.94 3.02
3031 3144 0.246635 GCGACTGGCTAGGTCAAGAA 59.753 55.000 0.85 0.00 39.11 2.52
3032 3145 1.737363 GCGACTGGCTAGGTCAAGAAG 60.737 57.143 0.85 0.00 39.11 2.85
3033 3146 1.819288 CGACTGGCTAGGTCAAGAAGA 59.181 52.381 0.85 0.00 33.73 2.87
3034 3147 2.428890 CGACTGGCTAGGTCAAGAAGAT 59.571 50.000 0.85 0.00 33.73 2.40
3035 3148 3.632604 CGACTGGCTAGGTCAAGAAGATA 59.367 47.826 0.85 0.00 33.73 1.98
3036 3149 4.279671 CGACTGGCTAGGTCAAGAAGATAT 59.720 45.833 0.85 0.00 33.73 1.63
3037 3150 5.473846 CGACTGGCTAGGTCAAGAAGATATA 59.526 44.000 0.85 0.00 33.73 0.86
3038 3151 6.151985 CGACTGGCTAGGTCAAGAAGATATAT 59.848 42.308 0.85 0.00 33.73 0.86
3039 3152 7.309499 CGACTGGCTAGGTCAAGAAGATATATT 60.309 40.741 0.85 0.00 33.73 1.28
3040 3153 8.268878 ACTGGCTAGGTCAAGAAGATATATTT 57.731 34.615 0.85 0.00 0.00 1.40
3041 3154 8.371699 ACTGGCTAGGTCAAGAAGATATATTTC 58.628 37.037 0.85 0.00 0.00 2.17
3042 3155 7.378966 TGGCTAGGTCAAGAAGATATATTTCG 58.621 38.462 0.00 0.00 0.00 3.46
3043 3156 6.311690 GGCTAGGTCAAGAAGATATATTTCGC 59.688 42.308 0.00 0.00 0.00 4.70
3044 3157 6.868864 GCTAGGTCAAGAAGATATATTTCGCA 59.131 38.462 0.00 0.00 0.00 5.10
3045 3158 7.385205 GCTAGGTCAAGAAGATATATTTCGCAA 59.615 37.037 0.00 0.00 0.00 4.85
3046 3159 7.721286 AGGTCAAGAAGATATATTTCGCAAG 57.279 36.000 0.00 0.00 0.00 4.01
3062 3175 3.607439 CGCAAGAAATATAGTTGGTGCG 58.393 45.455 19.14 19.14 46.12 5.34
3063 3176 3.063452 CGCAAGAAATATAGTTGGTGCGT 59.937 43.478 22.14 0.00 46.16 5.24
3064 3177 4.342772 GCAAGAAATATAGTTGGTGCGTG 58.657 43.478 0.00 0.00 0.00 5.34
3065 3178 4.730613 GCAAGAAATATAGTTGGTGCGTGG 60.731 45.833 0.00 0.00 0.00 4.94
3066 3179 4.216411 AGAAATATAGTTGGTGCGTGGT 57.784 40.909 0.00 0.00 0.00 4.16
3067 3180 4.585879 AGAAATATAGTTGGTGCGTGGTT 58.414 39.130 0.00 0.00 0.00 3.67
3068 3181 5.736813 AGAAATATAGTTGGTGCGTGGTTA 58.263 37.500 0.00 0.00 0.00 2.85
3069 3182 5.583457 AGAAATATAGTTGGTGCGTGGTTAC 59.417 40.000 0.00 0.00 0.00 2.50
3078 3191 3.856508 CGTGGTTACGTGAGGCTG 58.143 61.111 0.00 0.00 44.99 4.85
3079 3192 2.380410 CGTGGTTACGTGAGGCTGC 61.380 63.158 0.00 0.00 44.99 5.25
3080 3193 2.048597 TGGTTACGTGAGGCTGCG 60.049 61.111 0.00 0.00 0.00 5.18
3081 3194 2.048503 GGTTACGTGAGGCTGCGT 60.049 61.111 16.09 16.09 44.02 5.24
3082 3195 2.380410 GGTTACGTGAGGCTGCGTG 61.380 63.158 19.65 0.00 41.68 5.34
3083 3196 1.663702 GTTACGTGAGGCTGCGTGT 60.664 57.895 19.65 4.19 41.68 4.49
3084 3197 0.387622 GTTACGTGAGGCTGCGTGTA 60.388 55.000 19.65 8.26 41.68 2.90
3085 3198 0.528924 TTACGTGAGGCTGCGTGTAT 59.471 50.000 19.65 0.50 41.68 2.29
3086 3199 0.099968 TACGTGAGGCTGCGTGTATC 59.900 55.000 19.65 0.00 41.68 2.24
3087 3200 1.878522 CGTGAGGCTGCGTGTATCC 60.879 63.158 0.00 0.00 0.00 2.59
3088 3201 1.517832 GTGAGGCTGCGTGTATCCT 59.482 57.895 0.00 0.00 0.00 3.24
3089 3202 0.108138 GTGAGGCTGCGTGTATCCTT 60.108 55.000 0.00 0.00 0.00 3.36
3090 3203 0.108186 TGAGGCTGCGTGTATCCTTG 60.108 55.000 0.00 0.00 0.00 3.61
3091 3204 0.175760 GAGGCTGCGTGTATCCTTGA 59.824 55.000 0.00 0.00 0.00 3.02
3092 3205 0.108138 AGGCTGCGTGTATCCTTGAC 60.108 55.000 0.00 0.00 0.00 3.18
3093 3206 1.421410 GGCTGCGTGTATCCTTGACG 61.421 60.000 0.00 0.00 36.18 4.35
3094 3207 0.736325 GCTGCGTGTATCCTTGACGT 60.736 55.000 0.00 0.00 35.52 4.34
3095 3208 1.269166 CTGCGTGTATCCTTGACGTC 58.731 55.000 9.11 9.11 35.52 4.34
3096 3209 0.455464 TGCGTGTATCCTTGACGTCG 60.455 55.000 11.62 0.00 35.52 5.12
3097 3210 1.138047 GCGTGTATCCTTGACGTCGG 61.138 60.000 11.62 7.13 35.52 4.79
3098 3211 0.169672 CGTGTATCCTTGACGTCGGT 59.830 55.000 11.62 0.00 0.00 4.69
3099 3212 1.398041 CGTGTATCCTTGACGTCGGTA 59.602 52.381 11.62 0.00 0.00 4.02
3100 3213 2.032550 CGTGTATCCTTGACGTCGGTAT 59.967 50.000 11.62 4.54 0.00 2.73
3101 3214 3.488047 CGTGTATCCTTGACGTCGGTATT 60.488 47.826 11.62 0.00 0.00 1.89
3102 3215 4.260743 CGTGTATCCTTGACGTCGGTATTA 60.261 45.833 11.62 0.00 0.00 0.98
3103 3216 5.581605 GTGTATCCTTGACGTCGGTATTAA 58.418 41.667 11.62 0.00 0.00 1.40
3104 3217 6.211515 GTGTATCCTTGACGTCGGTATTAAT 58.788 40.000 11.62 0.00 0.00 1.40
3105 3218 6.698766 GTGTATCCTTGACGTCGGTATTAATT 59.301 38.462 11.62 0.00 0.00 1.40
3106 3219 7.223387 GTGTATCCTTGACGTCGGTATTAATTT 59.777 37.037 11.62 0.00 0.00 1.82
3107 3220 7.765360 TGTATCCTTGACGTCGGTATTAATTTT 59.235 33.333 11.62 0.00 0.00 1.82
3108 3221 6.411630 TCCTTGACGTCGGTATTAATTTTG 57.588 37.500 11.62 0.00 0.00 2.44
3109 3222 5.933463 TCCTTGACGTCGGTATTAATTTTGT 59.067 36.000 11.62 0.00 0.00 2.83
3110 3223 6.427547 TCCTTGACGTCGGTATTAATTTTGTT 59.572 34.615 11.62 0.00 0.00 2.83
3111 3224 6.521821 CCTTGACGTCGGTATTAATTTTGTTG 59.478 38.462 11.62 0.00 0.00 3.33
3112 3225 6.542574 TGACGTCGGTATTAATTTTGTTGT 57.457 33.333 11.62 0.00 0.00 3.32
3113 3226 6.364261 TGACGTCGGTATTAATTTTGTTGTG 58.636 36.000 11.62 0.00 0.00 3.33
3114 3227 6.018098 TGACGTCGGTATTAATTTTGTTGTGT 60.018 34.615 11.62 0.00 0.00 3.72
3115 3228 6.365050 ACGTCGGTATTAATTTTGTTGTGTC 58.635 36.000 0.00 0.00 0.00 3.67
3116 3229 5.502004 CGTCGGTATTAATTTTGTTGTGTCG 59.498 40.000 0.00 0.00 0.00 4.35
3117 3230 6.365050 GTCGGTATTAATTTTGTTGTGTCGT 58.635 36.000 0.00 0.00 0.00 4.34
3118 3231 6.852345 GTCGGTATTAATTTTGTTGTGTCGTT 59.148 34.615 0.00 0.00 0.00 3.85
3119 3232 6.851837 TCGGTATTAATTTTGTTGTGTCGTTG 59.148 34.615 0.00 0.00 0.00 4.10
3120 3233 6.633634 CGGTATTAATTTTGTTGTGTCGTTGT 59.366 34.615 0.00 0.00 0.00 3.32
3121 3234 7.797587 CGGTATTAATTTTGTTGTGTCGTTGTA 59.202 33.333 0.00 0.00 0.00 2.41
3122 3235 9.109533 GGTATTAATTTTGTTGTGTCGTTGTAG 57.890 33.333 0.00 0.00 0.00 2.74
3123 3236 9.866936 GTATTAATTTTGTTGTGTCGTTGTAGA 57.133 29.630 0.00 0.00 0.00 2.59
3124 3237 8.776680 ATTAATTTTGTTGTGTCGTTGTAGAC 57.223 30.769 0.00 0.00 41.30 2.59
3125 3238 4.603231 TTTTGTTGTGTCGTTGTAGACC 57.397 40.909 0.00 0.00 40.26 3.85
3126 3239 2.963548 TGTTGTGTCGTTGTAGACCA 57.036 45.000 0.00 0.00 40.26 4.02
3127 3240 3.462483 TGTTGTGTCGTTGTAGACCAT 57.538 42.857 0.00 0.00 40.26 3.55
3128 3241 4.587584 TGTTGTGTCGTTGTAGACCATA 57.412 40.909 0.00 0.00 40.26 2.74
3129 3242 5.142061 TGTTGTGTCGTTGTAGACCATAT 57.858 39.130 0.00 0.00 40.26 1.78
3130 3243 5.543714 TGTTGTGTCGTTGTAGACCATATT 58.456 37.500 0.00 0.00 40.26 1.28
3131 3244 5.992829 TGTTGTGTCGTTGTAGACCATATTT 59.007 36.000 0.00 0.00 40.26 1.40
3132 3245 6.483974 TGTTGTGTCGTTGTAGACCATATTTT 59.516 34.615 0.00 0.00 40.26 1.82
3133 3246 6.474819 TGTGTCGTTGTAGACCATATTTTG 57.525 37.500 0.00 0.00 40.26 2.44
3147 3260 5.702865 CCATATTTTGGCCATCTTATGTCG 58.297 41.667 6.09 0.00 39.09 4.35
3148 3261 5.473162 CCATATTTTGGCCATCTTATGTCGA 59.527 40.000 6.09 0.00 39.09 4.20
3149 3262 6.016360 CCATATTTTGGCCATCTTATGTCGAA 60.016 38.462 6.09 0.00 39.09 3.71
3150 3263 5.913137 ATTTTGGCCATCTTATGTCGAAA 57.087 34.783 6.09 0.00 0.00 3.46
3151 3264 5.713792 TTTTGGCCATCTTATGTCGAAAA 57.286 34.783 6.09 0.00 0.00 2.29
3152 3265 5.713792 TTTGGCCATCTTATGTCGAAAAA 57.286 34.783 6.09 0.00 0.00 1.94
3171 3284 4.696899 AAAATGTAAGGCGGAAGTTAGC 57.303 40.909 0.00 0.00 0.00 3.09
3172 3285 1.935933 ATGTAAGGCGGAAGTTAGCG 58.064 50.000 0.00 0.00 0.00 4.26
3173 3286 0.108520 TGTAAGGCGGAAGTTAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
3174 3287 0.174162 GTAAGGCGGAAGTTAGCGGA 59.826 55.000 0.00 0.00 0.00 5.54
3175 3288 1.117150 TAAGGCGGAAGTTAGCGGAT 58.883 50.000 0.00 0.00 0.00 4.18
3176 3289 0.462047 AAGGCGGAAGTTAGCGGATG 60.462 55.000 0.00 0.00 0.00 3.51
3177 3290 1.153429 GGCGGAAGTTAGCGGATGT 60.153 57.895 0.00 0.00 0.00 3.06
3178 3291 0.103572 GGCGGAAGTTAGCGGATGTA 59.896 55.000 0.00 0.00 0.00 2.29
3179 3292 1.472026 GGCGGAAGTTAGCGGATGTAA 60.472 52.381 0.00 0.00 0.00 2.41
3180 3293 2.273557 GCGGAAGTTAGCGGATGTAAA 58.726 47.619 0.00 0.00 0.00 2.01
3181 3294 2.674357 GCGGAAGTTAGCGGATGTAAAA 59.326 45.455 0.00 0.00 0.00 1.52
3182 3295 3.125658 GCGGAAGTTAGCGGATGTAAAAA 59.874 43.478 0.00 0.00 0.00 1.94
3183 3296 4.201881 GCGGAAGTTAGCGGATGTAAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
3184 3297 5.006941 GCGGAAGTTAGCGGATGTAAAAATA 59.993 40.000 0.00 0.00 0.00 1.40
3185 3298 6.293244 GCGGAAGTTAGCGGATGTAAAAATAT 60.293 38.462 0.00 0.00 0.00 1.28
3186 3299 7.636326 CGGAAGTTAGCGGATGTAAAAATATT 58.364 34.615 0.00 0.00 0.00 1.28
3187 3300 8.126700 CGGAAGTTAGCGGATGTAAAAATATTT 58.873 33.333 0.00 0.00 0.00 1.40
3188 3301 9.233232 GGAAGTTAGCGGATGTAAAAATATTTG 57.767 33.333 0.39 0.00 0.00 2.32
3189 3302 9.783256 GAAGTTAGCGGATGTAAAAATATTTGT 57.217 29.630 0.39 0.00 0.00 2.83
3190 3303 9.567848 AAGTTAGCGGATGTAAAAATATTTGTG 57.432 29.630 0.39 0.00 0.00 3.33
3191 3304 8.952278 AGTTAGCGGATGTAAAAATATTTGTGA 58.048 29.630 0.39 0.00 0.00 3.58
3192 3305 9.562583 GTTAGCGGATGTAAAAATATTTGTGAA 57.437 29.630 0.39 0.00 0.00 3.18
3207 3320 9.474920 AATATTTGTGAATATAAAATGCCCACG 57.525 29.630 0.00 0.00 37.44 4.94
3208 3321 6.516739 TTTGTGAATATAAAATGCCCACGA 57.483 33.333 0.00 0.00 0.00 4.35
3209 3322 5.749596 TGTGAATATAAAATGCCCACGAG 57.250 39.130 0.00 0.00 0.00 4.18
3210 3323 5.189928 TGTGAATATAAAATGCCCACGAGT 58.810 37.500 0.00 0.00 0.00 4.18
3211 3324 5.650266 TGTGAATATAAAATGCCCACGAGTT 59.350 36.000 0.00 0.00 0.00 3.01
3212 3325 6.151985 TGTGAATATAAAATGCCCACGAGTTT 59.848 34.615 0.00 0.00 0.00 2.66
3213 3326 7.033185 GTGAATATAAAATGCCCACGAGTTTT 58.967 34.615 0.00 0.00 0.00 2.43
3214 3327 7.009174 GTGAATATAAAATGCCCACGAGTTTTG 59.991 37.037 0.00 0.00 0.00 2.44
3215 3328 6.767524 ATATAAAATGCCCACGAGTTTTGA 57.232 33.333 0.00 0.00 0.00 2.69
3216 3329 3.810310 AAAATGCCCACGAGTTTTGAA 57.190 38.095 0.00 0.00 0.00 2.69
3217 3330 3.810310 AAATGCCCACGAGTTTTGAAA 57.190 38.095 0.00 0.00 0.00 2.69
3218 3331 3.810310 AATGCCCACGAGTTTTGAAAA 57.190 38.095 0.00 0.00 0.00 2.29
3219 3332 3.810310 ATGCCCACGAGTTTTGAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
3220 3333 3.157932 TGCCCACGAGTTTTGAAAAAG 57.842 42.857 0.00 0.00 0.00 2.27
3221 3334 2.755655 TGCCCACGAGTTTTGAAAAAGA 59.244 40.909 0.00 0.00 0.00 2.52
3222 3335 3.193691 TGCCCACGAGTTTTGAAAAAGAA 59.806 39.130 0.00 0.00 0.00 2.52
3223 3336 4.177783 GCCCACGAGTTTTGAAAAAGAAA 58.822 39.130 0.00 0.00 0.00 2.52
3224 3337 4.267690 GCCCACGAGTTTTGAAAAAGAAAG 59.732 41.667 0.00 0.00 0.00 2.62
3225 3338 5.407502 CCCACGAGTTTTGAAAAAGAAAGT 58.592 37.500 0.00 0.00 0.00 2.66
3226 3339 5.288472 CCCACGAGTTTTGAAAAAGAAAGTG 59.712 40.000 0.00 0.00 0.00 3.16
3227 3340 5.861787 CCACGAGTTTTGAAAAAGAAAGTGT 59.138 36.000 0.00 0.00 0.00 3.55
3228 3341 6.364976 CCACGAGTTTTGAAAAAGAAAGTGTT 59.635 34.615 0.00 0.00 0.00 3.32
3229 3342 7.095816 CCACGAGTTTTGAAAAAGAAAGTGTTT 60.096 33.333 0.00 0.00 0.00 2.83
3230 3343 8.272866 CACGAGTTTTGAAAAAGAAAGTGTTTT 58.727 29.630 0.00 0.00 0.00 2.43
3231 3344 8.484799 ACGAGTTTTGAAAAAGAAAGTGTTTTC 58.515 29.630 0.00 0.00 41.85 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.449177 GCTTGGCGAAAATGAAGCTATAACT 60.449 40.000 0.00 0.00 38.23 2.24
2 3 4.735338 GCTTGGCGAAAATGAAGCTATAAC 59.265 41.667 0.00 0.00 38.23 1.89
5 6 3.427161 GCTTGGCGAAAATGAAGCTAT 57.573 42.857 0.00 0.00 38.23 2.97
6 7 2.919666 GCTTGGCGAAAATGAAGCTA 57.080 45.000 0.00 0.00 38.23 3.32
7 8 1.251251 AGCTTGGCGAAAATGAAGCT 58.749 45.000 0.00 0.00 44.95 3.74
8 9 2.919666 TAGCTTGGCGAAAATGAAGC 57.080 45.000 0.00 0.00 40.97 3.86
9 10 3.111098 GCATAGCTTGGCGAAAATGAAG 58.889 45.455 0.00 0.00 0.00 3.02
10 11 2.491298 TGCATAGCTTGGCGAAAATGAA 59.509 40.909 0.00 0.00 0.00 2.57
11 12 2.090760 TGCATAGCTTGGCGAAAATGA 58.909 42.857 0.00 0.00 0.00 2.57
19 20 2.925563 GTCAAACAATGCATAGCTTGGC 59.074 45.455 0.00 1.36 0.00 4.52
24 25 3.848019 CGTGAAGTCAAACAATGCATAGC 59.152 43.478 0.00 0.00 0.00 2.97
36 37 7.306574 CGCTCTATATAATTTGCGTGAAGTCAA 60.307 37.037 0.00 0.00 38.81 3.18
64 65 0.467384 AGCTAGCCCACACATAGCAG 59.533 55.000 12.13 0.00 43.49 4.24
72 73 3.931907 ACAAATATCAGCTAGCCCACA 57.068 42.857 12.13 0.00 0.00 4.17
79 80 9.249457 CGACTGATCTTTTACAAATATCAGCTA 57.751 33.333 17.87 0.00 44.73 3.32
81 82 7.348201 CCGACTGATCTTTTACAAATATCAGC 58.652 38.462 17.87 12.47 44.73 4.26
84 85 7.494625 TGACCCGACTGATCTTTTACAAATATC 59.505 37.037 0.00 0.00 0.00 1.63
87 88 5.556915 TGACCCGACTGATCTTTTACAAAT 58.443 37.500 0.00 0.00 0.00 2.32
101 102 0.620556 AAATGGCTCATGACCCGACT 59.379 50.000 2.59 0.00 0.00 4.18
120 121 0.390998 TGCTCGATCGCACCAATTCA 60.391 50.000 11.09 0.00 34.44 2.57
125 126 4.819761 GGCTGCTCGATCGCACCA 62.820 66.667 11.09 6.14 35.74 4.17
139 140 2.433145 CACGACGTGATGCTGGCT 60.433 61.111 23.39 0.00 35.23 4.75
141 142 1.807165 CCTCACGACGTGATGCTGG 60.807 63.158 29.29 22.40 41.94 4.85
146 147 2.283529 AAGGGCCTCACGACGTGAT 61.284 57.895 29.29 12.90 41.94 3.06
169 170 2.224161 GGCCTTTGCAATGTTGTTGGTA 60.224 45.455 0.00 0.00 40.13 3.25
184 185 3.634910 ACGTTTGTGTTTCATAGGCCTTT 59.365 39.130 12.58 0.00 0.00 3.11
192 193 3.978217 CCGCAATAACGTTTGTGTTTCAT 59.022 39.130 5.91 0.00 35.76 2.57
195 196 3.549221 CCTCCGCAATAACGTTTGTGTTT 60.549 43.478 5.91 0.00 35.76 2.83
200 201 0.179174 GGCCTCCGCAATAACGTTTG 60.179 55.000 5.91 0.00 36.38 2.93
201 202 1.310216 GGGCCTCCGCAATAACGTTT 61.310 55.000 5.91 0.00 36.38 3.60
204 205 1.029947 AAAGGGCCTCCGCAATAACG 61.030 55.000 6.46 0.00 38.33 3.18
206 207 1.282447 TGTAAAGGGCCTCCGCAATAA 59.718 47.619 6.46 0.00 38.33 1.40
207 208 0.913205 TGTAAAGGGCCTCCGCAATA 59.087 50.000 6.46 0.00 38.33 1.90
214 215 2.676342 CGTATGTGTTGTAAAGGGCCTC 59.324 50.000 6.46 0.00 0.00 4.70
224 225 3.398406 TCTGCAATGTCGTATGTGTTGT 58.602 40.909 0.00 0.00 0.00 3.32
232 233 6.347402 GCTACTTTTCTTTCTGCAATGTCGTA 60.347 38.462 0.00 0.00 0.00 3.43
244 245 5.358298 ACCATCGTTGCTACTTTTCTTTC 57.642 39.130 0.00 0.00 0.00 2.62
247 248 4.749245 CAACCATCGTTGCTACTTTTCT 57.251 40.909 0.00 0.00 42.79 2.52
260 262 1.744522 TGATCCATGCAACAACCATCG 59.255 47.619 0.00 0.00 0.00 3.84
265 267 1.135199 CAGCCTGATCCATGCAACAAC 60.135 52.381 0.00 0.00 0.00 3.32
266 268 1.179152 CAGCCTGATCCATGCAACAA 58.821 50.000 0.00 0.00 0.00 2.83
273 275 0.778083 ATGATGGCAGCCTGATCCAT 59.222 50.000 14.15 3.78 42.83 3.41
282 284 1.402968 CTGTGTTACCATGATGGCAGC 59.597 52.381 12.25 0.70 42.67 5.25
284 286 3.054508 TCATCTGTGTTACCATGATGGCA 60.055 43.478 12.25 0.00 42.67 4.92
289 291 3.953712 ACGTCATCTGTGTTACCATGA 57.046 42.857 0.00 0.00 0.00 3.07
313 315 1.007387 CGTGTTGCAAAGGGCCTTC 60.007 57.895 21.20 8.77 43.89 3.46
320 322 3.354089 AATGTCCTTCGTGTTGCAAAG 57.646 42.857 0.00 0.00 0.00 2.77
332 334 3.134442 TGCAAAGGCTTCAAAATGTCCTT 59.866 39.130 0.00 0.00 41.91 3.36
334 336 3.110447 TGCAAAGGCTTCAAAATGTCC 57.890 42.857 0.00 0.00 41.91 4.02
377 379 2.456989 CAATCATCATTGTTGCTCCGC 58.543 47.619 0.00 0.00 35.53 5.54
394 396 2.292267 CAACCTAATCCGAGCAGCAAT 58.708 47.619 0.00 0.00 0.00 3.56
395 397 1.737838 CAACCTAATCCGAGCAGCAA 58.262 50.000 0.00 0.00 0.00 3.91
396 398 0.744414 GCAACCTAATCCGAGCAGCA 60.744 55.000 0.00 0.00 0.00 4.41
401 403 3.080647 GGTGGCAACCTAATCCGAG 57.919 57.895 1.77 0.00 43.84 4.63
416 418 0.733566 GCGTTCATGTTGCCATGGTG 60.734 55.000 14.67 2.98 46.96 4.17
424 426 3.486841 CCTTCAAAACAGCGTTCATGTTG 59.513 43.478 0.00 0.00 39.91 3.33
425 427 3.705604 CCTTCAAAACAGCGTTCATGTT 58.294 40.909 0.00 0.00 42.55 2.71
429 431 0.383949 GGCCTTCAAAACAGCGTTCA 59.616 50.000 0.00 0.00 0.00 3.18
430 432 0.318699 GGGCCTTCAAAACAGCGTTC 60.319 55.000 0.84 0.00 0.00 3.95
431 433 0.755327 AGGGCCTTCAAAACAGCGTT 60.755 50.000 0.00 0.00 0.00 4.84
435 437 3.817709 TGAAAAGGGCCTTCAAAACAG 57.182 42.857 21.20 0.00 29.93 3.16
436 438 3.261897 TGTTGAAAAGGGCCTTCAAAACA 59.738 39.130 24.97 24.97 42.73 2.83
440 442 1.407258 CGTGTTGAAAAGGGCCTTCAA 59.593 47.619 21.20 17.72 39.79 2.69
447 449 1.268335 CGTTGTCCGTGTTGAAAAGGG 60.268 52.381 0.00 0.00 0.00 3.95
448 450 2.099633 CGTTGTCCGTGTTGAAAAGG 57.900 50.000 0.00 0.00 0.00 3.11
464 466 1.407258 TGCAAAAGGCTTAGCAACGTT 59.593 42.857 20.64 0.00 45.15 3.99
472 474 7.561694 TGTCGTTTGTGTTGCAAAAGGCTTA 62.562 40.000 0.00 0.00 46.32 3.09
480 482 3.223423 ACAATGTCGTTTGTGTTGCAA 57.777 38.095 0.00 0.00 38.37 4.08
481 483 2.929531 ACAATGTCGTTTGTGTTGCA 57.070 40.000 0.00 0.00 38.37 4.08
486 488 8.066295 GCATATGCTTCACAATGTCGTTTGTG 62.066 42.308 20.64 16.88 45.66 3.33
498 500 2.095819 CACGTGTTGCATATGCTTCACA 60.096 45.455 32.66 26.46 41.40 3.58
506 508 1.086696 GAGCCACACGTGTTGCATAT 58.913 50.000 36.72 22.33 38.95 1.78
508 510 2.606961 CGAGCCACACGTGTTGCAT 61.607 57.895 36.72 25.11 38.95 3.96
518 520 2.591429 CTGCAACACCGAGCCACA 60.591 61.111 0.00 0.00 0.00 4.17
519 521 4.030452 GCTGCAACACCGAGCCAC 62.030 66.667 0.00 0.00 0.00 5.01
610 613 0.908198 GGCTTGACCACCATCTCTCT 59.092 55.000 0.00 0.00 38.86 3.10
630 633 2.689785 CGCATTGACCGCCATGTGT 61.690 57.895 0.00 0.00 0.00 3.72
631 634 2.100797 CGCATTGACCGCCATGTG 59.899 61.111 0.00 0.00 0.00 3.21
632 635 2.359850 ACGCATTGACCGCCATGT 60.360 55.556 0.00 0.00 0.00 3.21
633 636 1.717791 ATCACGCATTGACCGCCATG 61.718 55.000 0.00 0.00 36.92 3.66
634 637 1.451927 ATCACGCATTGACCGCCAT 60.452 52.632 0.00 0.00 36.92 4.40
635 638 2.046411 ATCACGCATTGACCGCCA 60.046 55.556 0.00 0.00 36.92 5.69
636 639 2.040213 CTCATCACGCATTGACCGCC 62.040 60.000 0.00 0.00 36.92 6.13
637 640 1.349627 CTCATCACGCATTGACCGC 59.650 57.895 0.00 0.00 36.92 5.68
638 641 1.349627 GCTCATCACGCATTGACCG 59.650 57.895 0.00 0.00 36.92 4.79
639 642 1.349627 CGCTCATCACGCATTGACC 59.650 57.895 0.00 0.00 36.92 4.02
640 643 1.349627 CCGCTCATCACGCATTGAC 59.650 57.895 0.00 0.00 36.92 3.18
641 644 1.815003 CCCGCTCATCACGCATTGA 60.815 57.895 0.00 0.00 39.11 2.57
642 645 2.040213 GACCCGCTCATCACGCATTG 62.040 60.000 0.00 0.00 0.00 2.82
643 646 1.815421 GACCCGCTCATCACGCATT 60.815 57.895 0.00 0.00 0.00 3.56
644 647 2.202932 GACCCGCTCATCACGCAT 60.203 61.111 0.00 0.00 0.00 4.73
645 648 4.794439 CGACCCGCTCATCACGCA 62.794 66.667 0.00 0.00 0.00 5.24
679 682 4.321601 CCAGACGAAGGCCTATCTAATCTG 60.322 50.000 5.16 13.34 0.00 2.90
683 686 3.308035 TCCAGACGAAGGCCTATCTAA 57.692 47.619 5.16 0.00 0.00 2.10
688 691 2.957006 GACTAATCCAGACGAAGGCCTA 59.043 50.000 5.16 0.00 0.00 3.93
689 692 1.757699 GACTAATCCAGACGAAGGCCT 59.242 52.381 0.00 0.00 0.00 5.19
690 693 1.757699 AGACTAATCCAGACGAAGGCC 59.242 52.381 0.00 0.00 0.00 5.19
691 694 3.131400 AGAAGACTAATCCAGACGAAGGC 59.869 47.826 0.00 0.00 0.00 4.35
692 695 4.399618 TCAGAAGACTAATCCAGACGAAGG 59.600 45.833 0.00 0.00 0.00 3.46
693 696 5.106118 TGTCAGAAGACTAATCCAGACGAAG 60.106 44.000 0.00 0.00 45.20 3.79
694 697 4.765339 TGTCAGAAGACTAATCCAGACGAA 59.235 41.667 0.00 0.00 45.20 3.85
695 698 4.156190 GTGTCAGAAGACTAATCCAGACGA 59.844 45.833 0.00 0.00 45.20 4.20
696 699 4.416620 GTGTCAGAAGACTAATCCAGACG 58.583 47.826 0.00 0.00 45.20 4.18
697 700 4.464597 AGGTGTCAGAAGACTAATCCAGAC 59.535 45.833 0.00 0.00 45.20 3.51
698 701 4.678256 AGGTGTCAGAAGACTAATCCAGA 58.322 43.478 0.00 0.00 45.20 3.86
699 702 5.174395 CAAGGTGTCAGAAGACTAATCCAG 58.826 45.833 0.00 0.00 45.20 3.86
700 703 4.593206 ACAAGGTGTCAGAAGACTAATCCA 59.407 41.667 0.00 0.00 45.20 3.41
701 704 5.153950 ACAAGGTGTCAGAAGACTAATCC 57.846 43.478 0.00 0.00 45.20 3.01
702 705 8.035394 TCAATACAAGGTGTCAGAAGACTAATC 58.965 37.037 0.00 0.00 45.20 1.75
703 706 7.907389 TCAATACAAGGTGTCAGAAGACTAAT 58.093 34.615 0.00 0.00 45.20 1.73
704 707 7.297936 TCAATACAAGGTGTCAGAAGACTAA 57.702 36.000 0.00 0.00 45.20 2.24
729 732 0.167251 CAACGCACAAATACCGGACC 59.833 55.000 9.46 0.00 0.00 4.46
758 761 4.749245 AGAAAAACTAGCGTGAACATGG 57.251 40.909 0.00 0.00 0.00 3.66
768 771 5.614887 CGCCACAAGTCTTAGAAAAACTAGC 60.615 44.000 0.00 0.00 32.30 3.42
769 772 5.694910 TCGCCACAAGTCTTAGAAAAACTAG 59.305 40.000 0.00 0.00 32.30 2.57
771 774 4.448210 TCGCCACAAGTCTTAGAAAAACT 58.552 39.130 0.00 0.00 0.00 2.66
787 790 7.010091 CCATTTTTCCTATACAAAATTCGCCAC 59.990 37.037 0.00 0.00 31.54 5.01
849 885 6.867550 AGTACTTAACCAACCCGAAGTATAC 58.132 40.000 0.00 0.00 36.91 1.47
852 888 6.010219 AGTAGTACTTAACCAACCCGAAGTA 58.990 40.000 0.00 0.00 34.15 2.24
853 889 4.835056 AGTAGTACTTAACCAACCCGAAGT 59.165 41.667 0.00 0.00 36.21 3.01
854 890 5.397142 AGTAGTACTTAACCAACCCGAAG 57.603 43.478 0.00 0.00 0.00 3.79
856 892 4.588528 ACAAGTAGTACTTAACCAACCCGA 59.411 41.667 15.13 0.00 36.03 5.14
863 899 9.958234 GGCTTAGTATACAAGTAGTACTTAACC 57.042 37.037 15.13 5.62 36.03 2.85
869 905 9.866798 AACTTTGGCTTAGTATACAAGTAGTAC 57.133 33.333 5.50 0.00 35.05 2.73
873 909 7.983484 GGCTAACTTTGGCTTAGTATACAAGTA 59.017 37.037 5.50 0.00 34.79 2.24
874 910 6.822170 GGCTAACTTTGGCTTAGTATACAAGT 59.178 38.462 5.50 1.38 34.79 3.16
875 911 6.821665 TGGCTAACTTTGGCTTAGTATACAAG 59.178 38.462 5.50 7.95 34.79 3.16
876 912 6.713276 TGGCTAACTTTGGCTTAGTATACAA 58.287 36.000 5.50 0.00 34.79 2.41
877 913 6.302535 TGGCTAACTTTGGCTTAGTATACA 57.697 37.500 5.50 0.00 34.79 2.29
878 914 8.148999 ACTATGGCTAACTTTGGCTTAGTATAC 58.851 37.037 17.33 0.00 43.65 1.47
879 915 8.258850 ACTATGGCTAACTTTGGCTTAGTATA 57.741 34.615 17.33 1.01 43.65 1.47
882 922 5.437191 ACTATGGCTAACTTTGGCTTAGT 57.563 39.130 14.81 14.81 42.07 2.24
884 924 7.399634 ACTTAACTATGGCTAACTTTGGCTTA 58.600 34.615 0.00 0.00 34.79 3.09
889 929 7.330208 ACACGTACTTAACTATGGCTAACTTTG 59.670 37.037 0.00 0.00 0.00 2.77
891 931 6.928520 ACACGTACTTAACTATGGCTAACTT 58.071 36.000 0.00 0.00 0.00 2.66
894 934 5.449041 CCGACACGTACTTAACTATGGCTAA 60.449 44.000 0.00 0.00 0.00 3.09
896 936 3.181493 CCGACACGTACTTAACTATGGCT 60.181 47.826 0.00 0.00 0.00 4.75
907 947 1.133790 GATTACAGGCCGACACGTACT 59.866 52.381 0.00 0.00 0.00 2.73
908 948 1.133790 AGATTACAGGCCGACACGTAC 59.866 52.381 0.00 0.00 0.00 3.67
911 951 1.421410 GCAGATTACAGGCCGACACG 61.421 60.000 0.00 0.00 0.00 4.49
914 954 1.668419 ATTGCAGATTACAGGCCGAC 58.332 50.000 0.00 0.00 0.00 4.79
915 955 2.092968 AGAATTGCAGATTACAGGCCGA 60.093 45.455 0.00 0.00 0.00 5.54
916 956 2.032550 CAGAATTGCAGATTACAGGCCG 59.967 50.000 0.00 0.00 0.00 6.13
917 957 3.705043 CAGAATTGCAGATTACAGGCC 57.295 47.619 0.00 0.00 0.00 5.19
931 971 1.741770 GGTCGCTCGGTGCAGAATT 60.742 57.895 2.75 0.00 43.06 2.17
933 973 4.717629 CGGTCGCTCGGTGCAGAA 62.718 66.667 2.75 0.00 43.06 3.02
940 980 4.052229 AACTGGTCGGTCGCTCGG 62.052 66.667 0.00 0.00 0.00 4.63
945 985 2.432628 GGCTCAACTGGTCGGTCG 60.433 66.667 0.00 0.00 0.00 4.79
948 988 0.250295 TCTTTGGCTCAACTGGTCGG 60.250 55.000 0.00 0.00 0.00 4.79
962 1002 5.927115 GGACTAGTGTAGGTTTGTCTCTTTG 59.073 44.000 0.00 0.00 0.00 2.77
973 1013 2.093288 TCGATCGTGGACTAGTGTAGGT 60.093 50.000 15.94 0.00 0.00 3.08
974 1014 2.544686 CTCGATCGTGGACTAGTGTAGG 59.455 54.545 15.94 0.00 0.00 3.18
975 1015 2.032722 GCTCGATCGTGGACTAGTGTAG 60.033 54.545 15.94 1.25 0.00 2.74
976 1016 1.938577 GCTCGATCGTGGACTAGTGTA 59.061 52.381 15.94 0.00 0.00 2.90
979 1019 1.018148 CTGCTCGATCGTGGACTAGT 58.982 55.000 15.94 0.00 0.00 2.57
991 1031 0.458543 GCGAACTTCATCCTGCTCGA 60.459 55.000 0.00 0.00 0.00 4.04
1131 1174 3.833645 TGGATCGGGCGGTCGAAG 61.834 66.667 0.00 0.00 42.69 3.79
1308 1351 1.009389 GCGAGTCAAGGAACCTGACG 61.009 60.000 13.40 0.00 37.61 4.35
1336 1379 2.034221 AAAAGCGTCCAGAGGGGC 59.966 61.111 0.00 0.00 36.21 5.80
1347 1390 0.940519 TACACCGGACGACAAAAGCG 60.941 55.000 9.46 0.00 0.00 4.68
1350 1393 0.940519 CGCTACACCGGACGACAAAA 60.941 55.000 9.46 0.00 0.00 2.44
1355 1398 2.816360 CGATCGCTACACCGGACGA 61.816 63.158 9.46 9.66 39.11 4.20
1448 1497 3.487202 CGGCATGGTTCCACGTCG 61.487 66.667 0.00 0.00 0.00 5.12
1599 1648 3.007323 AAGTCCAGGTACGGCCCC 61.007 66.667 0.00 0.00 38.26 5.80
1607 1656 2.029073 CGTGCGTGAAGTCCAGGT 59.971 61.111 0.00 0.00 33.44 4.00
1636 1685 3.179265 GATGGTCACGTCCGTGCG 61.179 66.667 14.64 0.00 45.04 5.34
1637 1686 2.813908 GGATGGTCACGTCCGTGC 60.814 66.667 14.64 9.74 42.60 5.34
1839 1888 2.165301 GCAGTTGCCGTAGTAGCCG 61.165 63.158 0.00 0.00 34.31 5.52
1914 1963 3.815569 GATCAGCCTCGCCGTCTCG 62.816 68.421 0.00 0.00 0.00 4.04
1937 1986 2.967615 GTATCCGCTCCTTGCCGC 60.968 66.667 0.00 0.00 38.78 6.53
2148 2197 1.737008 GTCCTTCCTCGAACACGGC 60.737 63.158 0.00 0.00 0.00 5.68
2172 2221 4.120331 GCCAGCACATTCACGCCC 62.120 66.667 0.00 0.00 0.00 6.13
2213 2262 2.967076 CGGCATGGAATCCGTCGG 60.967 66.667 4.39 4.39 40.72 4.79
2218 2267 1.895707 CCAGCTCGGCATGGAATCC 60.896 63.158 0.00 0.00 39.02 3.01
2259 2308 2.029844 GACACTCGAACAGGCTGCC 61.030 63.158 15.89 11.65 0.00 4.85
2263 2312 1.079503 GGAATGACACTCGAACAGGC 58.920 55.000 0.00 0.00 0.00 4.85
2276 2325 3.017442 ACGAGTCGATGAGAAGGAATGA 58.983 45.455 21.50 0.00 0.00 2.57
2282 2336 4.974103 AAAACAACGAGTCGATGAGAAG 57.026 40.909 26.94 2.83 33.96 2.85
2288 2342 5.007234 TGAATCACAAAAACAACGAGTCGAT 59.993 36.000 21.50 3.95 0.00 3.59
2293 2347 6.662616 AGATCTGAATCACAAAAACAACGAG 58.337 36.000 0.00 0.00 34.07 4.18
2303 2357 3.189080 CGTTGGCAAGATCTGAATCACAA 59.811 43.478 0.00 0.00 34.07 3.33
2304 2358 2.743664 CGTTGGCAAGATCTGAATCACA 59.256 45.455 0.00 0.00 34.07 3.58
2305 2359 2.096496 CCGTTGGCAAGATCTGAATCAC 59.904 50.000 0.00 0.00 34.07 3.06
2306 2360 2.358957 CCGTTGGCAAGATCTGAATCA 58.641 47.619 0.00 0.00 34.07 2.57
2333 2405 1.131883 GCTGCAGCGATGAAACTCAAT 59.868 47.619 25.23 0.00 0.00 2.57
2428 2506 9.072375 TGTCTTGTTGTATTACCATGATTGAAA 57.928 29.630 0.00 0.00 0.00 2.69
2491 2571 2.099263 TGCTTGTAGTCATCGCTAGGTC 59.901 50.000 0.00 0.00 0.00 3.85
2501 2581 3.739300 GCTCGTTTTAGTGCTTGTAGTCA 59.261 43.478 0.00 0.00 0.00 3.41
2603 2683 0.695347 GCTCTATGGGGCCTTAGCAT 59.305 55.000 0.84 0.14 42.56 3.79
2621 2701 4.645921 GGTTGCTGGTGCGTTGGC 62.646 66.667 0.00 0.00 43.34 4.52
2666 2752 3.258123 TCGTGTGTCTTCAGATTGGATCA 59.742 43.478 0.00 0.00 0.00 2.92
2718 2829 1.202842 TGTCTCCGGCGGATCTGTATA 60.203 52.381 31.23 8.97 0.00 1.47
2720 2831 0.467474 ATGTCTCCGGCGGATCTGTA 60.467 55.000 31.23 14.50 0.00 2.74
2739 2850 3.326578 AGTGGGCATGTGGCGGTA 61.327 61.111 0.00 0.00 46.16 4.02
2743 2854 0.754217 ATCATCAGTGGGCATGTGGC 60.754 55.000 0.00 0.00 43.74 5.01
2763 2874 1.112113 ATTCCGGTGATGCGTCTAGT 58.888 50.000 7.58 0.00 0.00 2.57
2782 2893 1.625879 TCTCCCCTCCTAGCCTCCA 60.626 63.158 0.00 0.00 0.00 3.86
2809 2920 1.819288 GTGACGACTCCCTGAAGATGA 59.181 52.381 0.00 0.00 0.00 2.92
2823 2934 1.579932 GAAGGCGAGACTGTGACGA 59.420 57.895 7.26 0.00 0.00 4.20
2826 2937 0.539669 TCAGGAAGGCGAGACTGTGA 60.540 55.000 0.00 0.00 32.92 3.58
2830 2941 1.603236 CTGCTCAGGAAGGCGAGACT 61.603 60.000 0.00 0.00 0.00 3.24
2902 3015 1.141881 GGATCTCGCTCTTTGCCGA 59.858 57.895 0.00 0.00 38.78 5.54
2911 3024 3.532155 GGCGGAGTGGATCTCGCT 61.532 66.667 6.52 7.22 43.60 4.93
2912 3025 3.492311 GAGGCGGAGTGGATCTCGC 62.492 68.421 0.00 0.00 43.60 5.03
2947 3060 2.273449 GGTCCCTCCCGTCTCGTA 59.727 66.667 0.00 0.00 0.00 3.43
2974 3087 0.912486 GTATTCTGCCTCCCACTGGT 59.088 55.000 0.00 0.00 0.00 4.00
2977 3090 0.044855 AGGGTATTCTGCCTCCCACT 59.955 55.000 0.00 0.00 42.12 4.00
2991 3104 2.838202 CCACCTTCAAGAAGCTAGGGTA 59.162 50.000 4.30 0.00 37.11 3.69
3006 3119 2.660064 CCTAGCCAGTCGCCACCTT 61.660 63.158 0.00 0.00 38.78 3.50
3038 3151 5.636837 GCACCAACTATATTTCTTGCGAAA 58.363 37.500 0.00 0.00 42.83 3.46
3039 3152 5.229921 GCACCAACTATATTTCTTGCGAA 57.770 39.130 0.00 0.00 0.00 4.70
3040 3153 4.875544 GCACCAACTATATTTCTTGCGA 57.124 40.909 0.00 0.00 0.00 5.10
3041 3154 3.607439 CGCACCAACTATATTTCTTGCG 58.393 45.455 11.05 11.05 44.64 4.85
3042 3155 4.342772 CACGCACCAACTATATTTCTTGC 58.657 43.478 0.00 0.00 0.00 4.01
3043 3156 4.394920 ACCACGCACCAACTATATTTCTTG 59.605 41.667 0.00 0.00 0.00 3.02
3044 3157 4.585879 ACCACGCACCAACTATATTTCTT 58.414 39.130 0.00 0.00 0.00 2.52
3045 3158 4.216411 ACCACGCACCAACTATATTTCT 57.784 40.909 0.00 0.00 0.00 2.52
3046 3159 4.957759 AACCACGCACCAACTATATTTC 57.042 40.909 0.00 0.00 0.00 2.17
3047 3160 4.330620 CGTAACCACGCACCAACTATATTT 59.669 41.667 0.00 0.00 42.05 1.40
3048 3161 3.866910 CGTAACCACGCACCAACTATATT 59.133 43.478 0.00 0.00 42.05 1.28
3049 3162 3.450578 CGTAACCACGCACCAACTATAT 58.549 45.455 0.00 0.00 42.05 0.86
3050 3163 2.878580 CGTAACCACGCACCAACTATA 58.121 47.619 0.00 0.00 42.05 1.31
3051 3164 1.717194 CGTAACCACGCACCAACTAT 58.283 50.000 0.00 0.00 42.05 2.12
3052 3165 3.198187 CGTAACCACGCACCAACTA 57.802 52.632 0.00 0.00 42.05 2.24
3053 3166 4.036977 CGTAACCACGCACCAACT 57.963 55.556 0.00 0.00 42.05 3.16
3062 3175 2.380410 CGCAGCCTCACGTAACCAC 61.380 63.158 0.00 0.00 0.00 4.16
3063 3176 2.048597 CGCAGCCTCACGTAACCA 60.049 61.111 0.00 0.00 0.00 3.67
3064 3177 2.048503 ACGCAGCCTCACGTAACC 60.049 61.111 0.00 0.00 41.48 2.85
3065 3178 0.387622 TACACGCAGCCTCACGTAAC 60.388 55.000 0.00 0.00 41.32 2.50
3066 3179 0.528924 ATACACGCAGCCTCACGTAA 59.471 50.000 0.00 0.00 41.32 3.18
3067 3180 0.099968 GATACACGCAGCCTCACGTA 59.900 55.000 0.00 0.00 41.32 3.57
3068 3181 1.153823 GATACACGCAGCCTCACGT 60.154 57.895 0.00 0.00 44.75 4.49
3069 3182 1.878522 GGATACACGCAGCCTCACG 60.879 63.158 0.00 0.00 0.00 4.35
3070 3183 0.108138 AAGGATACACGCAGCCTCAC 60.108 55.000 0.00 0.00 31.58 3.51
3071 3184 0.108186 CAAGGATACACGCAGCCTCA 60.108 55.000 0.00 0.00 31.58 3.86
3072 3185 0.175760 TCAAGGATACACGCAGCCTC 59.824 55.000 0.00 0.00 31.58 4.70
3073 3186 0.108138 GTCAAGGATACACGCAGCCT 60.108 55.000 0.00 0.00 35.26 4.58
3074 3187 1.421410 CGTCAAGGATACACGCAGCC 61.421 60.000 0.00 0.00 41.41 4.85
3075 3188 0.736325 ACGTCAAGGATACACGCAGC 60.736 55.000 0.00 0.00 37.02 5.25
3076 3189 1.269166 GACGTCAAGGATACACGCAG 58.731 55.000 11.55 0.00 37.02 5.18
3077 3190 0.455464 CGACGTCAAGGATACACGCA 60.455 55.000 17.16 0.00 37.02 5.24
3078 3191 1.138047 CCGACGTCAAGGATACACGC 61.138 60.000 17.16 0.00 37.02 5.34
3079 3192 0.169672 ACCGACGTCAAGGATACACG 59.830 55.000 17.16 0.00 39.48 4.49
3080 3193 3.705043 ATACCGACGTCAAGGATACAC 57.295 47.619 17.16 0.00 41.41 2.90
3081 3194 5.833406 TTAATACCGACGTCAAGGATACA 57.167 39.130 17.16 0.00 41.41 2.29
3082 3195 7.704789 AAATTAATACCGACGTCAAGGATAC 57.295 36.000 17.16 0.00 0.00 2.24
3083 3196 7.765360 ACAAAATTAATACCGACGTCAAGGATA 59.235 33.333 17.16 5.51 0.00 2.59
3084 3197 6.596497 ACAAAATTAATACCGACGTCAAGGAT 59.404 34.615 17.16 5.36 0.00 3.24
3085 3198 5.933463 ACAAAATTAATACCGACGTCAAGGA 59.067 36.000 17.16 2.76 0.00 3.36
3086 3199 6.173191 ACAAAATTAATACCGACGTCAAGG 57.827 37.500 17.16 12.12 0.00 3.61
3087 3200 7.059033 CACAACAAAATTAATACCGACGTCAAG 59.941 37.037 17.16 8.75 0.00 3.02
3088 3201 6.851837 CACAACAAAATTAATACCGACGTCAA 59.148 34.615 17.16 0.86 0.00 3.18
3089 3202 6.018098 ACACAACAAAATTAATACCGACGTCA 60.018 34.615 17.16 0.00 0.00 4.35
3090 3203 6.365050 ACACAACAAAATTAATACCGACGTC 58.635 36.000 5.18 5.18 0.00 4.34
3091 3204 6.303021 ACACAACAAAATTAATACCGACGT 57.697 33.333 0.00 0.00 0.00 4.34
3092 3205 5.502004 CGACACAACAAAATTAATACCGACG 59.498 40.000 0.00 0.00 0.00 5.12
3093 3206 6.365050 ACGACACAACAAAATTAATACCGAC 58.635 36.000 0.00 0.00 0.00 4.79
3094 3207 6.542574 ACGACACAACAAAATTAATACCGA 57.457 33.333 0.00 0.00 0.00 4.69
3095 3208 6.633634 ACAACGACACAACAAAATTAATACCG 59.366 34.615 0.00 0.00 0.00 4.02
3096 3209 7.917720 ACAACGACACAACAAAATTAATACC 57.082 32.000 0.00 0.00 0.00 2.73
3097 3210 9.866936 TCTACAACGACACAACAAAATTAATAC 57.133 29.630 0.00 0.00 0.00 1.89
3098 3211 9.866936 GTCTACAACGACACAACAAAATTAATA 57.133 29.630 0.00 0.00 34.11 0.98
3099 3212 7.858879 GGTCTACAACGACACAACAAAATTAAT 59.141 33.333 0.00 0.00 35.63 1.40
3100 3213 7.148289 TGGTCTACAACGACACAACAAAATTAA 60.148 33.333 0.00 0.00 35.63 1.40
3101 3214 6.315642 TGGTCTACAACGACACAACAAAATTA 59.684 34.615 0.00 0.00 35.63 1.40
3102 3215 5.124138 TGGTCTACAACGACACAACAAAATT 59.876 36.000 0.00 0.00 35.63 1.82
3103 3216 4.636648 TGGTCTACAACGACACAACAAAAT 59.363 37.500 0.00 0.00 35.63 1.82
3104 3217 4.001652 TGGTCTACAACGACACAACAAAA 58.998 39.130 0.00 0.00 35.63 2.44
3105 3218 3.597255 TGGTCTACAACGACACAACAAA 58.403 40.909 0.00 0.00 35.63 2.83
3106 3219 3.248495 TGGTCTACAACGACACAACAA 57.752 42.857 0.00 0.00 35.63 2.83
3107 3220 2.963548 TGGTCTACAACGACACAACA 57.036 45.000 0.00 0.00 35.63 3.33
3108 3221 6.476243 AAATATGGTCTACAACGACACAAC 57.524 37.500 0.00 0.00 35.63 3.32
3109 3222 6.072948 CCAAAATATGGTCTACAACGACACAA 60.073 38.462 0.00 0.00 44.85 3.33
3110 3223 5.410132 CCAAAATATGGTCTACAACGACACA 59.590 40.000 0.00 0.00 44.85 3.72
3111 3224 5.864986 CCAAAATATGGTCTACAACGACAC 58.135 41.667 0.00 0.00 44.85 3.67
3125 3238 6.558771 TCGACATAAGATGGCCAAAATATG 57.441 37.500 23.18 23.18 33.66 1.78
3126 3239 7.581213 TTTCGACATAAGATGGCCAAAATAT 57.419 32.000 10.96 5.56 33.66 1.28
3127 3240 7.397892 TTTTCGACATAAGATGGCCAAAATA 57.602 32.000 10.96 2.96 33.66 1.40
3128 3241 5.913137 TTTCGACATAAGATGGCCAAAAT 57.087 34.783 10.96 0.16 33.66 1.82
3129 3242 5.713792 TTTTCGACATAAGATGGCCAAAA 57.286 34.783 10.96 0.00 33.66 2.44
3130 3243 5.713792 TTTTTCGACATAAGATGGCCAAA 57.286 34.783 10.96 0.00 33.66 3.28
3149 3262 4.379082 CGCTAACTTCCGCCTTACATTTTT 60.379 41.667 0.00 0.00 0.00 1.94
3150 3263 3.126343 CGCTAACTTCCGCCTTACATTTT 59.874 43.478 0.00 0.00 0.00 1.82
3151 3264 2.676342 CGCTAACTTCCGCCTTACATTT 59.324 45.455 0.00 0.00 0.00 2.32
3152 3265 2.277084 CGCTAACTTCCGCCTTACATT 58.723 47.619 0.00 0.00 0.00 2.71
3153 3266 1.472728 CCGCTAACTTCCGCCTTACAT 60.473 52.381 0.00 0.00 0.00 2.29
3154 3267 0.108520 CCGCTAACTTCCGCCTTACA 60.109 55.000 0.00 0.00 0.00 2.41
3155 3268 0.174162 TCCGCTAACTTCCGCCTTAC 59.826 55.000 0.00 0.00 0.00 2.34
3156 3269 1.117150 ATCCGCTAACTTCCGCCTTA 58.883 50.000 0.00 0.00 0.00 2.69
3157 3270 0.462047 CATCCGCTAACTTCCGCCTT 60.462 55.000 0.00 0.00 0.00 4.35
3158 3271 1.144057 CATCCGCTAACTTCCGCCT 59.856 57.895 0.00 0.00 0.00 5.52
3159 3272 0.103572 TACATCCGCTAACTTCCGCC 59.896 55.000 0.00 0.00 0.00 6.13
3160 3273 1.930567 TTACATCCGCTAACTTCCGC 58.069 50.000 0.00 0.00 0.00 5.54
3161 3274 4.932268 TTTTTACATCCGCTAACTTCCG 57.068 40.909 0.00 0.00 0.00 4.30
3162 3275 9.233232 CAAATATTTTTACATCCGCTAACTTCC 57.767 33.333 0.00 0.00 0.00 3.46
3163 3276 9.783256 ACAAATATTTTTACATCCGCTAACTTC 57.217 29.630 0.00 0.00 0.00 3.01
3164 3277 9.567848 CACAAATATTTTTACATCCGCTAACTT 57.432 29.630 0.00 0.00 0.00 2.66
3165 3278 8.952278 TCACAAATATTTTTACATCCGCTAACT 58.048 29.630 0.00 0.00 0.00 2.24
3166 3279 9.562583 TTCACAAATATTTTTACATCCGCTAAC 57.437 29.630 0.00 0.00 0.00 2.34
3181 3294 9.474920 CGTGGGCATTTTATATTCACAAATATT 57.525 29.630 0.00 0.00 38.66 1.28
3182 3295 8.855110 TCGTGGGCATTTTATATTCACAAATAT 58.145 29.630 0.00 0.00 40.42 1.28
3183 3296 8.226819 TCGTGGGCATTTTATATTCACAAATA 57.773 30.769 0.00 0.00 0.00 1.40
3184 3297 7.106439 TCGTGGGCATTTTATATTCACAAAT 57.894 32.000 0.00 0.00 0.00 2.32
3185 3298 6.151985 ACTCGTGGGCATTTTATATTCACAAA 59.848 34.615 0.00 0.00 0.00 2.83
3186 3299 5.650266 ACTCGTGGGCATTTTATATTCACAA 59.350 36.000 0.00 0.00 0.00 3.33
3187 3300 5.189928 ACTCGTGGGCATTTTATATTCACA 58.810 37.500 0.00 0.00 0.00 3.58
3188 3301 5.751243 ACTCGTGGGCATTTTATATTCAC 57.249 39.130 0.00 0.00 0.00 3.18
3189 3302 6.767524 AAACTCGTGGGCATTTTATATTCA 57.232 33.333 0.00 0.00 0.00 2.57
3190 3303 7.254852 TCAAAACTCGTGGGCATTTTATATTC 58.745 34.615 0.00 0.00 0.00 1.75
3191 3304 7.164230 TCAAAACTCGTGGGCATTTTATATT 57.836 32.000 0.00 0.00 0.00 1.28
3192 3305 6.767524 TCAAAACTCGTGGGCATTTTATAT 57.232 33.333 0.00 0.00 0.00 0.86
3193 3306 6.576662 TTCAAAACTCGTGGGCATTTTATA 57.423 33.333 0.00 0.00 0.00 0.98
3194 3307 5.461032 TTCAAAACTCGTGGGCATTTTAT 57.539 34.783 0.00 0.00 0.00 1.40
3195 3308 4.920640 TTCAAAACTCGTGGGCATTTTA 57.079 36.364 0.00 0.00 0.00 1.52
3196 3309 3.810310 TTCAAAACTCGTGGGCATTTT 57.190 38.095 0.00 0.00 0.00 1.82
3197 3310 3.810310 TTTCAAAACTCGTGGGCATTT 57.190 38.095 0.00 0.00 0.00 2.32
3198 3311 3.810310 TTTTCAAAACTCGTGGGCATT 57.190 38.095 0.00 0.00 0.00 3.56
3199 3312 3.383185 TCTTTTTCAAAACTCGTGGGCAT 59.617 39.130 0.00 0.00 0.00 4.40
3200 3313 2.755655 TCTTTTTCAAAACTCGTGGGCA 59.244 40.909 0.00 0.00 0.00 5.36
3201 3314 3.430333 TCTTTTTCAAAACTCGTGGGC 57.570 42.857 0.00 0.00 0.00 5.36
3202 3315 5.288472 CACTTTCTTTTTCAAAACTCGTGGG 59.712 40.000 0.00 0.00 0.00 4.61
3203 3316 5.861787 ACACTTTCTTTTTCAAAACTCGTGG 59.138 36.000 0.00 0.00 0.00 4.94
3204 3317 6.927933 ACACTTTCTTTTTCAAAACTCGTG 57.072 33.333 0.00 0.00 0.00 4.35
3205 3318 7.940178 AAACACTTTCTTTTTCAAAACTCGT 57.060 28.000 0.00 0.00 0.00 4.18
3206 3319 8.844977 GAAAACACTTTCTTTTTCAAAACTCG 57.155 30.769 0.00 0.00 40.15 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.