Multiple sequence alignment - TraesCS3A01G041900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G041900 chr3A 100.000 2525 0 0 1 2525 22564448 22561924 0.000000e+00 4663
1 TraesCS3A01G041900 chr3D 80.835 1868 136 97 1 1800 14153949 14155662 0.000000e+00 1262
2 TraesCS3A01G041900 chr3B 84.235 1313 96 54 629 1884 20799250 20800508 0.000000e+00 1175
3 TraesCS3A01G041900 chr3B 82.217 433 45 13 1948 2356 20800509 20800933 6.690000e-91 344
4 TraesCS3A01G041900 chr3B 76.060 401 35 38 47 430 20798677 20799033 4.350000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G041900 chr3A 22561924 22564448 2524 True 4663 4663 100.000000 1 2525 1 chr3A.!!$R1 2524
1 TraesCS3A01G041900 chr3D 14153949 14155662 1713 False 1262 1262 80.835000 1 1800 1 chr3D.!!$F1 1799
2 TraesCS3A01G041900 chr3B 20798677 20800933 2256 False 557 1175 80.837333 47 2356 3 chr3B.!!$F1 2309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 281 0.451383 TAGCATGCATTGTTGGACGC 59.549 50.0 21.98 0.0 32.03 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2134 0.029834 GAACCAACTGCACTGCACTG 59.97 55.0 0.0 0.61 33.79 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.169769 CTCATGTCGGCCCCTTAAAGTA 59.830 50.000 0.00 0.00 0.00 2.24
41 42 3.582208 TGTCGGCCCCTTAAAGTAAAGTA 59.418 43.478 0.00 0.00 0.00 2.24
42 43 3.935203 GTCGGCCCCTTAAAGTAAAGTAC 59.065 47.826 0.00 0.00 0.00 2.73
45 46 5.483583 TCGGCCCCTTAAAGTAAAGTACTAA 59.516 40.000 0.00 0.00 38.26 2.24
46 47 6.156775 TCGGCCCCTTAAAGTAAAGTACTAAT 59.843 38.462 0.00 0.00 38.26 1.73
49 50 7.443575 GGCCCCTTAAAGTAAAGTACTAATAGC 59.556 40.741 0.00 0.00 38.26 2.97
91 97 1.063649 CGAGATACGACCGGTGGTG 59.936 63.158 30.00 14.01 45.77 4.17
92 98 1.436336 GAGATACGACCGGTGGTGG 59.564 63.158 30.00 10.91 35.25 4.61
93 99 1.304713 AGATACGACCGGTGGTGGT 60.305 57.895 30.00 19.00 45.99 4.16
107 115 4.673298 TGGTACCGCTGCACCACG 62.673 66.667 7.57 0.00 39.91 4.94
129 138 0.890542 ACCGGCTCAGTACACGTACA 60.891 55.000 0.00 0.00 38.48 2.90
130 139 0.455633 CCGGCTCAGTACACGTACAC 60.456 60.000 9.85 0.00 38.48 2.90
131 140 0.791983 CGGCTCAGTACACGTACACG 60.792 60.000 9.85 0.00 46.33 4.49
159 168 1.992170 ACGAACCAGTGTTATCGAGC 58.008 50.000 14.06 0.00 33.97 5.03
162 171 3.106672 CGAACCAGTGTTATCGAGCTAC 58.893 50.000 4.06 0.00 33.97 3.58
165 174 4.737855 ACCAGTGTTATCGAGCTACATT 57.262 40.909 0.00 0.00 0.00 2.71
167 176 6.216801 ACCAGTGTTATCGAGCTACATTTA 57.783 37.500 0.00 0.00 0.00 1.40
168 183 6.636705 ACCAGTGTTATCGAGCTACATTTAA 58.363 36.000 0.00 0.00 0.00 1.52
170 185 7.769044 ACCAGTGTTATCGAGCTACATTTAATT 59.231 33.333 0.00 0.00 0.00 1.40
187 202 9.987272 ACATTTAATTATGATGAGATGAGACGA 57.013 29.630 13.37 0.00 0.00 4.20
194 209 9.968870 ATTATGATGAGATGAGACGATGATATG 57.031 33.333 0.00 0.00 0.00 1.78
195 210 7.642082 ATGATGAGATGAGACGATGATATGA 57.358 36.000 0.00 0.00 0.00 2.15
196 211 7.642082 TGATGAGATGAGACGATGATATGAT 57.358 36.000 0.00 0.00 0.00 2.45
197 212 8.743085 TGATGAGATGAGACGATGATATGATA 57.257 34.615 0.00 0.00 0.00 2.15
198 213 8.838365 TGATGAGATGAGACGATGATATGATAG 58.162 37.037 0.00 0.00 0.00 2.08
199 214 8.750515 ATGAGATGAGACGATGATATGATAGT 57.249 34.615 0.00 0.00 0.00 2.12
200 215 9.844257 ATGAGATGAGACGATGATATGATAGTA 57.156 33.333 0.00 0.00 0.00 1.82
201 216 9.323985 TGAGATGAGACGATGATATGATAGTAG 57.676 37.037 0.00 0.00 0.00 2.57
225 240 1.319614 AATCCGGTGGAATTTGGGCG 61.320 55.000 0.00 0.00 34.34 6.13
242 257 1.674817 GGCGCTTGCAGGTTCTAGTAA 60.675 52.381 7.64 0.00 41.71 2.24
243 258 2.280628 GCGCTTGCAGGTTCTAGTAAT 58.719 47.619 0.00 0.00 38.92 1.89
244 259 2.030946 GCGCTTGCAGGTTCTAGTAATG 59.969 50.000 0.00 0.00 38.92 1.90
245 260 3.521560 CGCTTGCAGGTTCTAGTAATGA 58.478 45.455 0.00 0.00 0.00 2.57
246 261 3.553511 CGCTTGCAGGTTCTAGTAATGAG 59.446 47.826 0.00 0.00 0.00 2.90
247 262 4.508662 GCTTGCAGGTTCTAGTAATGAGT 58.491 43.478 0.00 0.00 0.00 3.41
248 263 5.661458 GCTTGCAGGTTCTAGTAATGAGTA 58.339 41.667 0.00 0.00 0.00 2.59
266 281 0.451383 TAGCATGCATTGTTGGACGC 59.549 50.000 21.98 0.00 32.03 5.19
267 282 1.806758 GCATGCATTGTTGGACGCC 60.807 57.895 14.21 0.00 0.00 5.68
268 283 1.514657 CATGCATTGTTGGACGCCG 60.515 57.895 0.00 0.00 0.00 6.46
306 334 4.760047 GGTGTCGGCATGCGGTCT 62.760 66.667 22.79 0.00 0.00 3.85
307 335 3.490759 GTGTCGGCATGCGGTCTG 61.491 66.667 22.79 5.76 0.00 3.51
350 378 2.586357 GCGATCACCTTCCCGAGC 60.586 66.667 0.00 0.00 0.00 5.03
351 379 2.107141 CGATCACCTTCCCGAGCC 59.893 66.667 0.00 0.00 0.00 4.70
352 380 2.107141 GATCACCTTCCCGAGCCG 59.893 66.667 0.00 0.00 0.00 5.52
353 381 2.363795 ATCACCTTCCCGAGCCGA 60.364 61.111 0.00 0.00 0.00 5.54
354 382 2.356818 GATCACCTTCCCGAGCCGAG 62.357 65.000 0.00 0.00 0.00 4.63
355 383 4.821589 CACCTTCCCGAGCCGAGC 62.822 72.222 0.00 0.00 0.00 5.03
443 502 3.285215 GGGCGCGATCTCCGTCTA 61.285 66.667 12.10 0.00 41.15 2.59
465 548 2.176369 GCGTACGTGCAATAACTCGTA 58.824 47.619 17.90 1.34 40.02 3.43
472 555 4.042398 CGTGCAATAACTCGTACTAGCAT 58.958 43.478 0.00 0.00 32.98 3.79
473 556 5.209977 CGTGCAATAACTCGTACTAGCATA 58.790 41.667 0.00 0.00 32.98 3.14
474 557 5.115171 CGTGCAATAACTCGTACTAGCATAC 59.885 44.000 0.00 0.00 32.98 2.39
475 558 6.207213 GTGCAATAACTCGTACTAGCATACT 58.793 40.000 0.00 0.00 32.98 2.12
476 559 7.358066 GTGCAATAACTCGTACTAGCATACTA 58.642 38.462 0.00 0.00 32.98 1.82
539 630 1.601903 GCGATTTACCATTGCCATCGA 59.398 47.619 4.12 0.00 39.26 3.59
590 681 1.222115 AAGAAGAACAGCGACGTGGC 61.222 55.000 15.38 15.38 0.00 5.01
591 682 2.665185 AAGAACAGCGACGTGGCC 60.665 61.111 19.50 3.59 0.00 5.36
645 736 1.153978 CGTTGCATGCACATCCACC 60.154 57.895 22.58 1.52 0.00 4.61
726 824 2.047274 GCTGAAGGCGGCTGTGTA 60.047 61.111 14.21 0.00 43.23 2.90
760 878 4.349503 TGCGACCAGGCCAGCAAT 62.350 61.111 5.01 0.00 36.60 3.56
761 879 3.818787 GCGACCAGGCCAGCAATG 61.819 66.667 5.01 0.00 0.00 2.82
762 880 3.818787 CGACCAGGCCAGCAATGC 61.819 66.667 5.01 0.00 0.00 3.56
900 1029 0.532862 GCACCATCGTATCACCCCAG 60.533 60.000 0.00 0.00 0.00 4.45
961 1090 4.106925 GCCTCCCCTGCACCAGAG 62.107 72.222 0.00 0.00 32.44 3.35
962 1091 4.106925 CCTCCCCTGCACCAGAGC 62.107 72.222 0.00 0.00 32.44 4.09
964 1093 1.687146 CTCCCCTGCACCAGAGCTA 60.687 63.158 0.00 0.00 32.44 3.32
965 1094 1.684386 CTCCCCTGCACCAGAGCTAG 61.684 65.000 0.00 0.00 32.44 3.42
966 1095 2.188994 CCCTGCACCAGAGCTAGC 59.811 66.667 6.62 6.62 32.44 3.42
967 1096 2.663075 CCCTGCACCAGAGCTAGCA 61.663 63.158 18.83 0.00 32.44 3.49
969 1098 4.118584 TGCACCAGAGCTAGCAGA 57.881 55.556 18.83 0.00 34.99 4.26
970 1099 1.895966 TGCACCAGAGCTAGCAGAG 59.104 57.895 18.83 5.40 34.99 3.35
971 1100 1.143620 GCACCAGAGCTAGCAGAGG 59.856 63.158 18.83 16.72 0.00 3.69
972 1101 1.326213 GCACCAGAGCTAGCAGAGGA 61.326 60.000 18.83 0.00 0.00 3.71
973 1102 0.746063 CACCAGAGCTAGCAGAGGAG 59.254 60.000 18.83 9.69 0.00 3.69
977 1106 1.457455 GAGCTAGCAGAGGAGGGCT 60.457 63.158 18.83 0.00 43.94 5.19
978 1107 1.457455 AGCTAGCAGAGGAGGGCTC 60.457 63.158 18.83 0.00 41.41 4.70
979 1108 1.457455 GCTAGCAGAGGAGGGCTCT 60.457 63.158 10.63 0.00 41.41 4.09
980 1109 1.463553 GCTAGCAGAGGAGGGCTCTC 61.464 65.000 10.63 4.50 41.41 3.20
988 1117 2.277404 GAGGGCTCTCCGGACTCT 59.723 66.667 0.57 0.00 41.52 3.24
989 1118 1.532728 GAGGGCTCTCCGGACTCTA 59.467 63.158 0.57 0.00 41.52 2.43
991 1120 2.197605 GGGCTCTCCGGACTCTAGC 61.198 68.421 0.00 7.45 0.00 3.42
1334 1469 2.005960 GAGTGGGACGAGATGGACGG 62.006 65.000 0.00 0.00 34.93 4.79
1335 1470 3.458163 TGGGACGAGATGGACGGC 61.458 66.667 0.00 0.00 38.12 5.68
1336 1471 4.570663 GGGACGAGATGGACGGCG 62.571 72.222 4.80 4.80 39.91 6.46
1340 1475 4.847516 CGAGATGGACGGCGCGAA 62.848 66.667 12.10 0.00 0.00 4.70
1341 1476 3.255379 GAGATGGACGGCGCGAAC 61.255 66.667 12.10 0.00 0.00 3.95
1527 1665 2.740714 CTACGCCGCCAAGTGAAGC 61.741 63.158 0.00 0.00 0.00 3.86
1550 1688 4.717917 GACGGACGTCGCAAAATG 57.282 55.556 9.92 0.00 43.89 2.32
1551 1689 1.509162 GACGGACGTCGCAAAATGC 60.509 57.895 9.92 0.00 43.89 3.56
1602 1743 2.159170 CCTTCCGCTTCGAGAGAGAAAT 60.159 50.000 0.00 0.00 43.69 2.17
1625 1795 3.492337 AGATAGGAGCTGCTACCACTAC 58.508 50.000 18.02 5.41 0.00 2.73
1673 1854 1.108132 ACGGACTAATCGAGGAGGCC 61.108 60.000 10.65 10.65 37.53 5.19
1684 1865 1.471676 CGAGGAGGCCACTAATGTCAC 60.472 57.143 5.01 0.00 0.00 3.67
1685 1866 0.912486 AGGAGGCCACTAATGTCACC 59.088 55.000 5.01 0.00 0.00 4.02
1695 1876 2.159085 ACTAATGTCACCTTAGGCGAGC 60.159 50.000 0.00 0.00 31.75 5.03
1700 1881 2.756283 ACCTTAGGCGAGCGAGCT 60.756 61.111 0.00 0.00 37.29 4.09
1702 1883 1.284408 CCTTAGGCGAGCGAGCTAG 59.716 63.158 0.00 0.00 37.29 3.42
1703 1884 1.448922 CCTTAGGCGAGCGAGCTAGT 61.449 60.000 7.03 0.00 37.29 2.57
1704 1885 0.382515 CTTAGGCGAGCGAGCTAGTT 59.617 55.000 7.03 0.00 37.29 2.24
1705 1886 1.602851 CTTAGGCGAGCGAGCTAGTTA 59.397 52.381 7.03 0.00 37.29 2.24
1707 1888 0.100861 AGGCGAGCGAGCTAGTTAAC 59.899 55.000 7.03 0.00 37.29 2.01
1708 1889 0.870735 GGCGAGCGAGCTAGTTAACC 60.871 60.000 0.88 0.00 37.29 2.85
1709 1890 0.179145 GCGAGCGAGCTAGTTAACCA 60.179 55.000 0.88 0.00 0.00 3.67
1710 1891 1.828832 CGAGCGAGCTAGTTAACCAG 58.171 55.000 0.88 0.00 0.00 4.00
1711 1892 1.400846 CGAGCGAGCTAGTTAACCAGA 59.599 52.381 5.14 0.00 0.00 3.86
1712 1893 2.033550 CGAGCGAGCTAGTTAACCAGAT 59.966 50.000 5.14 0.00 0.00 2.90
1713 1894 3.376540 GAGCGAGCTAGTTAACCAGATG 58.623 50.000 5.14 0.00 0.00 2.90
1714 1895 2.761208 AGCGAGCTAGTTAACCAGATGT 59.239 45.455 5.14 0.00 0.00 3.06
1715 1896 3.195825 AGCGAGCTAGTTAACCAGATGTT 59.804 43.478 5.14 0.00 41.11 2.71
1716 1897 4.401519 AGCGAGCTAGTTAACCAGATGTTA 59.598 41.667 5.14 0.00 38.42 2.41
1717 1898 5.069251 AGCGAGCTAGTTAACCAGATGTTAT 59.931 40.000 5.14 0.00 39.14 1.89
1718 1899 5.175856 GCGAGCTAGTTAACCAGATGTTATG 59.824 44.000 5.14 0.00 39.14 1.90
1719 1900 5.175856 CGAGCTAGTTAACCAGATGTTATGC 59.824 44.000 5.14 0.00 39.14 3.14
1720 1901 5.989477 AGCTAGTTAACCAGATGTTATGCA 58.011 37.500 5.14 0.00 39.14 3.96
1721 1902 6.414732 AGCTAGTTAACCAGATGTTATGCAA 58.585 36.000 5.14 0.00 39.14 4.08
1759 1943 3.716856 AAATTGCGACGGCGATGCG 62.717 57.895 18.90 15.39 42.60 4.73
1800 1984 1.810151 GTGCCCTGCGTCTTGATTTTA 59.190 47.619 0.00 0.00 0.00 1.52
1822 2008 1.120147 CGTGTTGTTGCGCGATTAGC 61.120 55.000 12.10 0.00 44.10 3.09
1823 2009 0.165944 GTGTTGTTGCGCGATTAGCT 59.834 50.000 12.10 0.00 45.59 3.32
1824 2010 0.871722 TGTTGTTGCGCGATTAGCTT 59.128 45.000 12.10 0.00 45.59 3.74
1835 2021 3.120752 CGCGATTAGCTTCCATTCTCATG 60.121 47.826 0.00 0.00 45.59 3.07
1844 2030 2.621338 TCCATTCTCATGTGCGTTCTC 58.379 47.619 0.00 0.00 0.00 2.87
1848 2034 1.079819 CTCATGTGCGTTCTCCGGT 60.080 57.895 0.00 0.00 36.94 5.28
1851 2037 0.719465 CATGTGCGTTCTCCGGTAAC 59.281 55.000 0.00 6.86 36.94 2.50
1870 2056 2.034532 TGGCTCGTCACCGGAGTA 59.965 61.111 9.46 0.00 33.95 2.59
1874 2060 0.179169 GCTCGTCACCGGAGTAGTTC 60.179 60.000 9.46 0.00 33.95 3.01
1875 2061 1.451067 CTCGTCACCGGAGTAGTTCT 58.549 55.000 9.46 0.00 33.95 3.01
1879 2065 1.617357 GTCACCGGAGTAGTTCTTGGT 59.383 52.381 9.46 0.00 36.21 3.67
1884 2070 5.359009 TCACCGGAGTAGTTCTTGGTATTAG 59.641 44.000 9.46 0.00 34.78 1.73
1885 2071 4.648307 ACCGGAGTAGTTCTTGGTATTAGG 59.352 45.833 9.46 0.00 34.78 2.69
1886 2072 4.891756 CCGGAGTAGTTCTTGGTATTAGGA 59.108 45.833 0.00 0.00 0.00 2.94
1887 2073 5.221204 CCGGAGTAGTTCTTGGTATTAGGAC 60.221 48.000 0.00 0.00 0.00 3.85
1888 2074 5.593502 CGGAGTAGTTCTTGGTATTAGGACT 59.406 44.000 0.00 0.00 35.62 3.85
1889 2075 6.096564 CGGAGTAGTTCTTGGTATTAGGACTT 59.903 42.308 0.00 0.00 33.51 3.01
1890 2076 7.266400 GGAGTAGTTCTTGGTATTAGGACTTG 58.734 42.308 0.00 0.00 33.51 3.16
1891 2077 6.641474 AGTAGTTCTTGGTATTAGGACTTGC 58.359 40.000 0.00 0.00 33.51 4.01
1892 2078 5.499004 AGTTCTTGGTATTAGGACTTGCA 57.501 39.130 0.00 0.00 26.39 4.08
1893 2079 6.067217 AGTTCTTGGTATTAGGACTTGCAT 57.933 37.500 0.00 0.00 26.39 3.96
1894 2080 6.485171 AGTTCTTGGTATTAGGACTTGCATT 58.515 36.000 0.00 0.00 26.39 3.56
1895 2081 6.599638 AGTTCTTGGTATTAGGACTTGCATTC 59.400 38.462 0.00 0.00 26.39 2.67
1896 2082 5.437060 TCTTGGTATTAGGACTTGCATTCC 58.563 41.667 6.75 6.75 0.00 3.01
1897 2083 4.853468 TGGTATTAGGACTTGCATTCCA 57.147 40.909 15.47 0.00 35.33 3.53
1898 2084 5.387113 TGGTATTAGGACTTGCATTCCAT 57.613 39.130 15.47 5.59 35.33 3.41
1899 2085 5.376625 TGGTATTAGGACTTGCATTCCATC 58.623 41.667 15.47 0.00 35.33 3.51
1900 2086 5.104151 TGGTATTAGGACTTGCATTCCATCA 60.104 40.000 15.47 0.93 35.33 3.07
1901 2087 5.239525 GGTATTAGGACTTGCATTCCATCAC 59.760 44.000 15.47 8.30 35.33 3.06
1902 2088 2.885135 AGGACTTGCATTCCATCACA 57.115 45.000 15.47 0.00 35.33 3.58
1903 2089 2.719739 AGGACTTGCATTCCATCACAG 58.280 47.619 15.47 0.00 35.33 3.66
1904 2090 1.133790 GGACTTGCATTCCATCACAGC 59.866 52.381 9.53 0.00 32.82 4.40
1905 2091 1.814394 GACTTGCATTCCATCACAGCA 59.186 47.619 0.00 0.00 0.00 4.41
1906 2092 2.229543 GACTTGCATTCCATCACAGCAA 59.770 45.455 0.00 0.00 42.27 3.91
1907 2093 2.029649 ACTTGCATTCCATCACAGCAAC 60.030 45.455 0.00 0.00 39.95 4.17
1908 2094 0.522626 TGCATTCCATCACAGCAACG 59.477 50.000 0.00 0.00 31.42 4.10
1909 2095 0.799534 GCATTCCATCACAGCAACGC 60.800 55.000 0.00 0.00 0.00 4.84
1910 2096 0.522626 CATTCCATCACAGCAACGCA 59.477 50.000 0.00 0.00 0.00 5.24
1911 2097 0.523072 ATTCCATCACAGCAACGCAC 59.477 50.000 0.00 0.00 0.00 5.34
1912 2098 0.817229 TTCCATCACAGCAACGCACA 60.817 50.000 0.00 0.00 0.00 4.57
1913 2099 0.817229 TCCATCACAGCAACGCACAA 60.817 50.000 0.00 0.00 0.00 3.33
1914 2100 0.030504 CCATCACAGCAACGCACAAA 59.969 50.000 0.00 0.00 0.00 2.83
1915 2101 1.122849 CATCACAGCAACGCACAAAC 58.877 50.000 0.00 0.00 0.00 2.93
1916 2102 0.316937 ATCACAGCAACGCACAAACG 60.317 50.000 0.00 0.00 39.50 3.60
1917 2103 1.061729 CACAGCAACGCACAAACGA 59.938 52.632 0.00 0.00 36.70 3.85
1918 2104 0.925267 CACAGCAACGCACAAACGAG 60.925 55.000 0.00 0.00 36.70 4.18
1919 2105 1.369209 CAGCAACGCACAAACGAGG 60.369 57.895 0.00 0.00 36.70 4.63
1920 2106 2.051345 GCAACGCACAAACGAGGG 60.051 61.111 0.00 0.00 36.70 4.30
1921 2107 2.051345 CAACGCACAAACGAGGGC 60.051 61.111 0.00 0.00 36.70 5.19
1922 2108 2.203153 AACGCACAAACGAGGGCT 60.203 55.556 0.00 0.00 36.70 5.19
1923 2109 2.251642 AACGCACAAACGAGGGCTC 61.252 57.895 0.00 0.00 36.70 4.70
1924 2110 3.423154 CGCACAAACGAGGGCTCC 61.423 66.667 0.00 0.00 34.06 4.70
1925 2111 2.032681 GCACAAACGAGGGCTCCT 59.967 61.111 0.00 0.00 36.03 3.69
1926 2112 2.328099 GCACAAACGAGGGCTCCTG 61.328 63.158 0.00 0.00 31.76 3.86
1927 2113 1.071471 CACAAACGAGGGCTCCTGT 59.929 57.895 0.00 0.00 31.76 4.00
1928 2114 0.951040 CACAAACGAGGGCTCCTGTC 60.951 60.000 0.00 0.00 31.76 3.51
1929 2115 1.376037 CAAACGAGGGCTCCTGTCC 60.376 63.158 0.00 0.00 38.50 4.02
1935 2121 3.721706 GGGCTCCTGTCCTGTGGG 61.722 72.222 0.00 0.00 34.49 4.61
1936 2122 2.930562 GGCTCCTGTCCTGTGGGT 60.931 66.667 0.00 0.00 0.00 4.51
1937 2123 2.348998 GCTCCTGTCCTGTGGGTG 59.651 66.667 0.00 0.00 0.00 4.61
1938 2124 3.072476 CTCCTGTCCTGTGGGTGG 58.928 66.667 0.00 0.00 0.00 4.61
1939 2125 3.249189 TCCTGTCCTGTGGGTGGC 61.249 66.667 0.00 0.00 0.00 5.01
1940 2126 3.569210 CCTGTCCTGTGGGTGGCA 61.569 66.667 0.00 0.00 0.00 4.92
1941 2127 2.515398 CTGTCCTGTGGGTGGCAA 59.485 61.111 0.00 0.00 0.00 4.52
1942 2128 1.152777 CTGTCCTGTGGGTGGCAAA 60.153 57.895 0.00 0.00 0.00 3.68
1943 2129 1.454847 TGTCCTGTGGGTGGCAAAC 60.455 57.895 0.00 0.00 0.00 2.93
1944 2130 1.152756 GTCCTGTGGGTGGCAAACT 60.153 57.895 0.00 0.00 0.00 2.66
1945 2131 1.152777 TCCTGTGGGTGGCAAACTG 60.153 57.895 0.00 0.00 0.00 3.16
1946 2132 2.730094 CTGTGGGTGGCAAACTGC 59.270 61.111 0.00 0.00 44.08 4.40
1967 2153 0.029834 CAGTGCAGTGCAGTTGGTTC 59.970 55.000 22.92 7.12 40.54 3.62
1969 2155 1.077140 TGCAGTGCAGTTGGTTCCA 60.077 52.632 15.37 0.00 33.32 3.53
2003 2189 2.435059 GGACGACAAGCCTGCCTC 60.435 66.667 0.00 0.00 0.00 4.70
2018 2204 2.752358 CTCTGCCTGTTGCCTCCA 59.248 61.111 0.00 0.00 40.16 3.86
2022 2208 0.538057 CTGCCTGTTGCCTCCAGAAA 60.538 55.000 0.00 0.00 40.16 2.52
2026 2212 1.349026 CCTGTTGCCTCCAGAAAGAGA 59.651 52.381 0.00 0.00 35.82 3.10
2029 2215 1.072331 GTTGCCTCCAGAAAGAGACCA 59.928 52.381 0.00 0.00 35.82 4.02
2083 2289 3.927163 GAACGGCGCGGAGAAAGGA 62.927 63.158 22.76 0.00 0.00 3.36
2125 2331 2.426023 GTGGAGGTGGAGTGCGTT 59.574 61.111 0.00 0.00 0.00 4.84
2127 2333 2.047179 GGAGGTGGAGTGCGTTCC 60.047 66.667 0.00 0.00 37.77 3.62
2128 2334 2.047179 GAGGTGGAGTGCGTTCCC 60.047 66.667 4.06 0.00 36.35 3.97
2129 2335 2.847234 AGGTGGAGTGCGTTCCCA 60.847 61.111 4.06 0.00 36.35 4.37
2150 2360 1.469703 TGTCAGCAAATGCCAGAATCG 59.530 47.619 0.94 0.00 43.38 3.34
2172 2382 3.244579 GCGTCGTTTCTGTAACTCTGTTT 59.755 43.478 0.00 0.00 34.46 2.83
2174 2384 5.421203 CGTCGTTTCTGTAACTCTGTTTTC 58.579 41.667 0.00 0.00 34.46 2.29
2207 2417 0.527565 GCGTTCCCATGTCAGCAAAT 59.472 50.000 0.00 0.00 0.00 2.32
2208 2418 1.733389 GCGTTCCCATGTCAGCAAATG 60.733 52.381 0.00 0.00 0.00 2.32
2209 2419 1.541147 CGTTCCCATGTCAGCAAATGT 59.459 47.619 0.00 0.00 0.00 2.71
2224 2434 0.168788 AATGTGGCTGAATCGCGTTG 59.831 50.000 5.77 0.00 0.00 4.10
2226 2436 2.358615 TGGCTGAATCGCGTTGCT 60.359 55.556 5.77 0.00 0.00 3.91
2228 2438 1.512734 GGCTGAATCGCGTTGCTTG 60.513 57.895 5.77 0.00 0.00 4.01
2232 2442 0.790207 TGAATCGCGTTGCTTGTCTC 59.210 50.000 5.77 0.00 0.00 3.36
2233 2443 0.095417 GAATCGCGTTGCTTGTCTCC 59.905 55.000 5.77 0.00 0.00 3.71
2243 2453 1.566018 GCTTGTCTCCGTTTCCGTGG 61.566 60.000 0.00 0.00 0.00 4.94
2245 2455 0.464870 TTGTCTCCGTTTCCGTGGAA 59.535 50.000 0.00 0.00 32.89 3.53
2248 2458 0.032952 TCTCCGTTTCCGTGGAACAG 59.967 55.000 0.00 0.00 41.80 3.16
2249 2459 1.566018 CTCCGTTTCCGTGGAACAGC 61.566 60.000 0.00 0.00 41.80 4.40
2250 2460 1.597027 CCGTTTCCGTGGAACAGCT 60.597 57.895 0.00 0.00 41.80 4.24
2251 2461 1.569493 CGTTTCCGTGGAACAGCTG 59.431 57.895 13.48 13.48 41.80 4.24
2262 2472 0.657840 GAACAGCTGTTGCACTTCGT 59.342 50.000 35.67 9.42 42.74 3.85
2266 2476 2.135139 CAGCTGTTGCACTTCGTAAGA 58.865 47.619 5.25 0.00 44.04 2.10
2269 2479 3.005472 AGCTGTTGCACTTCGTAAGAGTA 59.995 43.478 0.00 0.00 45.66 2.59
2273 2483 7.331654 GCTGTTGCACTTCGTAAGAGTATGTA 61.332 42.308 0.00 0.00 43.61 2.29
2291 2501 4.983215 TGTAATGTACGTTCAGTTGCAG 57.017 40.909 2.93 0.00 0.00 4.41
2292 2502 2.969443 AATGTACGTTCAGTTGCAGC 57.031 45.000 0.00 0.00 0.00 5.25
2293 2503 1.877637 ATGTACGTTCAGTTGCAGCA 58.122 45.000 2.55 0.00 0.00 4.41
2294 2504 0.934496 TGTACGTTCAGTTGCAGCAC 59.066 50.000 2.55 0.00 0.00 4.40
2295 2505 0.111266 GTACGTTCAGTTGCAGCACG 60.111 55.000 9.76 9.76 36.91 5.34
2296 2506 1.827315 TACGTTCAGTTGCAGCACGC 61.827 55.000 10.98 0.00 42.89 5.34
2297 2507 2.425773 GTTCAGTTGCAGCACGCG 60.426 61.111 3.53 3.53 46.97 6.01
2298 2508 4.312231 TTCAGTTGCAGCACGCGC 62.312 61.111 5.73 0.00 46.97 6.86
2341 2551 4.517285 CAGAATGCTACTTTCAAGCCCTA 58.483 43.478 0.00 0.00 39.30 3.53
2342 2552 4.943705 CAGAATGCTACTTTCAAGCCCTAA 59.056 41.667 0.00 0.00 39.30 2.69
2344 2554 5.591877 AGAATGCTACTTTCAAGCCCTAATG 59.408 40.000 0.00 0.00 39.30 1.90
2351 2561 4.653801 ACTTTCAAGCCCTAATGTGGTTTT 59.346 37.500 0.00 0.00 0.00 2.43
2352 2562 4.599047 TTCAAGCCCTAATGTGGTTTTG 57.401 40.909 0.00 0.00 0.00 2.44
2353 2563 3.571590 TCAAGCCCTAATGTGGTTTTGT 58.428 40.909 0.00 0.00 0.00 2.83
2354 2564 4.730966 TCAAGCCCTAATGTGGTTTTGTA 58.269 39.130 0.00 0.00 0.00 2.41
2355 2565 4.521256 TCAAGCCCTAATGTGGTTTTGTAC 59.479 41.667 0.00 0.00 0.00 2.90
2356 2566 3.078837 AGCCCTAATGTGGTTTTGTACG 58.921 45.455 0.00 0.00 0.00 3.67
2357 2567 3.075884 GCCCTAATGTGGTTTTGTACGA 58.924 45.455 0.00 0.00 0.00 3.43
2358 2568 3.692593 GCCCTAATGTGGTTTTGTACGAT 59.307 43.478 0.00 0.00 0.00 3.73
2359 2569 4.157105 GCCCTAATGTGGTTTTGTACGATT 59.843 41.667 0.00 0.00 0.00 3.34
2360 2570 5.336134 GCCCTAATGTGGTTTTGTACGATTT 60.336 40.000 0.00 0.00 0.00 2.17
2361 2571 6.683715 CCCTAATGTGGTTTTGTACGATTTT 58.316 36.000 0.00 0.00 0.00 1.82
2362 2572 7.149307 CCCTAATGTGGTTTTGTACGATTTTT 58.851 34.615 0.00 0.00 0.00 1.94
2363 2573 8.298140 CCCTAATGTGGTTTTGTACGATTTTTA 58.702 33.333 0.00 0.00 0.00 1.52
2364 2574 9.849166 CCTAATGTGGTTTTGTACGATTTTTAT 57.151 29.630 0.00 0.00 0.00 1.40
2367 2577 9.849166 AATGTGGTTTTGTACGATTTTTATAGG 57.151 29.630 0.00 0.00 0.00 2.57
2368 2578 8.618702 TGTGGTTTTGTACGATTTTTATAGGA 57.381 30.769 0.00 0.00 0.00 2.94
2369 2579 8.505625 TGTGGTTTTGTACGATTTTTATAGGAC 58.494 33.333 0.00 0.00 0.00 3.85
2370 2580 8.505625 GTGGTTTTGTACGATTTTTATAGGACA 58.494 33.333 0.00 0.00 0.00 4.02
2371 2581 9.233649 TGGTTTTGTACGATTTTTATAGGACAT 57.766 29.630 0.00 0.00 0.00 3.06
2372 2582 9.498307 GGTTTTGTACGATTTTTATAGGACATG 57.502 33.333 0.00 0.00 0.00 3.21
2419 2629 6.530019 AAGCCCTTTGATTTTGTATAGTGG 57.470 37.500 0.00 0.00 0.00 4.00
2420 2630 5.826643 AGCCCTTTGATTTTGTATAGTGGA 58.173 37.500 0.00 0.00 0.00 4.02
2421 2631 6.435164 AGCCCTTTGATTTTGTATAGTGGAT 58.565 36.000 0.00 0.00 0.00 3.41
2422 2632 6.897413 AGCCCTTTGATTTTGTATAGTGGATT 59.103 34.615 0.00 0.00 0.00 3.01
2423 2633 7.068716 AGCCCTTTGATTTTGTATAGTGGATTC 59.931 37.037 0.00 0.00 0.00 2.52
2424 2634 7.147915 GCCCTTTGATTTTGTATAGTGGATTCA 60.148 37.037 0.00 0.00 0.00 2.57
2425 2635 8.917088 CCCTTTGATTTTGTATAGTGGATTCAT 58.083 33.333 0.00 0.00 0.00 2.57
2426 2636 9.740239 CCTTTGATTTTGTATAGTGGATTCATG 57.260 33.333 0.00 0.00 0.00 3.07
2429 2639 9.685276 TTGATTTTGTATAGTGGATTCATGTCT 57.315 29.630 0.00 0.00 0.00 3.41
2430 2640 9.685276 TGATTTTGTATAGTGGATTCATGTCTT 57.315 29.630 0.00 0.00 0.00 3.01
2432 2642 8.506168 TTTTGTATAGTGGATTCATGTCTTCC 57.494 34.615 0.00 0.00 0.00 3.46
2433 2643 6.806668 TGTATAGTGGATTCATGTCTTCCA 57.193 37.500 9.11 9.11 37.20 3.53
2434 2644 7.379059 TGTATAGTGGATTCATGTCTTCCAT 57.621 36.000 14.20 8.36 41.37 3.41
2435 2645 7.445121 TGTATAGTGGATTCATGTCTTCCATC 58.555 38.462 14.20 9.71 41.37 3.51
2436 2646 4.849813 AGTGGATTCATGTCTTCCATCA 57.150 40.909 14.20 0.00 41.37 3.07
2437 2647 4.521146 AGTGGATTCATGTCTTCCATCAC 58.479 43.478 14.20 5.38 41.37 3.06
2438 2648 4.019051 AGTGGATTCATGTCTTCCATCACA 60.019 41.667 14.20 0.00 41.37 3.58
2439 2649 4.885907 GTGGATTCATGTCTTCCATCACAT 59.114 41.667 14.20 0.00 41.37 3.21
2440 2650 6.057533 GTGGATTCATGTCTTCCATCACATA 58.942 40.000 14.20 0.00 41.37 2.29
2441 2651 6.713903 GTGGATTCATGTCTTCCATCACATAT 59.286 38.462 14.20 0.00 41.37 1.78
2442 2652 6.938596 TGGATTCATGTCTTCCATCACATATC 59.061 38.462 9.11 0.00 34.65 1.63
2443 2653 6.938596 GGATTCATGTCTTCCATCACATATCA 59.061 38.462 0.00 0.00 31.78 2.15
2444 2654 7.446319 GGATTCATGTCTTCCATCACATATCAA 59.554 37.037 0.00 0.00 31.78 2.57
2445 2655 8.756486 ATTCATGTCTTCCATCACATATCAAA 57.244 30.769 0.00 0.00 31.78 2.69
2446 2656 7.797038 TCATGTCTTCCATCACATATCAAAG 57.203 36.000 0.00 0.00 31.78 2.77
2447 2657 7.567458 TCATGTCTTCCATCACATATCAAAGA 58.433 34.615 0.00 0.00 31.78 2.52
2448 2658 7.713942 TCATGTCTTCCATCACATATCAAAGAG 59.286 37.037 0.00 0.00 31.78 2.85
2449 2659 5.819379 TGTCTTCCATCACATATCAAAGAGC 59.181 40.000 0.00 0.00 0.00 4.09
2450 2660 5.819379 GTCTTCCATCACATATCAAAGAGCA 59.181 40.000 0.00 0.00 0.00 4.26
2451 2661 6.317140 GTCTTCCATCACATATCAAAGAGCAA 59.683 38.462 0.00 0.00 0.00 3.91
2452 2662 6.885918 TCTTCCATCACATATCAAAGAGCAAA 59.114 34.615 0.00 0.00 0.00 3.68
2453 2663 7.394077 TCTTCCATCACATATCAAAGAGCAAAA 59.606 33.333 0.00 0.00 0.00 2.44
2454 2664 7.649533 TCCATCACATATCAAAGAGCAAAAT 57.350 32.000 0.00 0.00 0.00 1.82
2455 2665 8.750515 TCCATCACATATCAAAGAGCAAAATA 57.249 30.769 0.00 0.00 0.00 1.40
2456 2666 9.358406 TCCATCACATATCAAAGAGCAAAATAT 57.642 29.630 0.00 0.00 0.00 1.28
2457 2667 9.976511 CCATCACATATCAAAGAGCAAAATATT 57.023 29.630 0.00 0.00 0.00 1.28
2461 2671 9.403110 CACATATCAAAGAGCAAAATATTAGGC 57.597 33.333 3.68 3.68 0.00 3.93
2462 2672 8.579863 ACATATCAAAGAGCAAAATATTAGGCC 58.420 33.333 0.00 0.00 0.00 5.19
2463 2673 5.499139 TCAAAGAGCAAAATATTAGGCCG 57.501 39.130 0.00 0.00 0.00 6.13
2464 2674 4.338118 TCAAAGAGCAAAATATTAGGCCGG 59.662 41.667 0.00 0.00 0.00 6.13
2465 2675 3.857157 AGAGCAAAATATTAGGCCGGA 57.143 42.857 5.05 0.00 0.00 5.14
2466 2676 3.477530 AGAGCAAAATATTAGGCCGGAC 58.522 45.455 5.05 0.00 0.00 4.79
2467 2677 2.552743 GAGCAAAATATTAGGCCGGACC 59.447 50.000 1.76 4.96 39.61 4.46
2478 2688 2.341846 GGCCGGACCTAATGATGAAA 57.658 50.000 5.05 0.00 34.51 2.69
2479 2689 2.650322 GGCCGGACCTAATGATGAAAA 58.350 47.619 5.05 0.00 34.51 2.29
2480 2690 3.020984 GGCCGGACCTAATGATGAAAAA 58.979 45.455 5.05 0.00 34.51 1.94
2481 2691 3.066760 GGCCGGACCTAATGATGAAAAAG 59.933 47.826 5.05 0.00 34.51 2.27
2482 2692 3.945285 GCCGGACCTAATGATGAAAAAGA 59.055 43.478 5.05 0.00 0.00 2.52
2483 2693 4.398044 GCCGGACCTAATGATGAAAAAGAA 59.602 41.667 5.05 0.00 0.00 2.52
2484 2694 5.105917 GCCGGACCTAATGATGAAAAAGAAA 60.106 40.000 5.05 0.00 0.00 2.52
2485 2695 6.571537 GCCGGACCTAATGATGAAAAAGAAAA 60.572 38.462 5.05 0.00 0.00 2.29
2486 2696 6.806739 CCGGACCTAATGATGAAAAAGAAAAC 59.193 38.462 0.00 0.00 0.00 2.43
2487 2697 7.367285 CGGACCTAATGATGAAAAAGAAAACA 58.633 34.615 0.00 0.00 0.00 2.83
2488 2698 7.865385 CGGACCTAATGATGAAAAAGAAAACAA 59.135 33.333 0.00 0.00 0.00 2.83
2489 2699 9.710900 GGACCTAATGATGAAAAAGAAAACAAT 57.289 29.630 0.00 0.00 0.00 2.71
2498 2708 9.650371 GATGAAAAAGAAAACAATAAACCAAGC 57.350 29.630 0.00 0.00 0.00 4.01
2499 2709 8.553459 TGAAAAAGAAAACAATAAACCAAGCA 57.447 26.923 0.00 0.00 0.00 3.91
2500 2710 9.003658 TGAAAAAGAAAACAATAAACCAAGCAA 57.996 25.926 0.00 0.00 0.00 3.91
2501 2711 9.272901 GAAAAAGAAAACAATAAACCAAGCAAC 57.727 29.630 0.00 0.00 0.00 4.17
2502 2712 7.913674 AAAGAAAACAATAAACCAAGCAACA 57.086 28.000 0.00 0.00 0.00 3.33
2503 2713 8.504812 AAAGAAAACAATAAACCAAGCAACAT 57.495 26.923 0.00 0.00 0.00 2.71
2504 2714 7.713764 AGAAAACAATAAACCAAGCAACATC 57.286 32.000 0.00 0.00 0.00 3.06
2505 2715 7.500141 AGAAAACAATAAACCAAGCAACATCT 58.500 30.769 0.00 0.00 0.00 2.90
2506 2716 7.439056 AGAAAACAATAAACCAAGCAACATCTG 59.561 33.333 0.00 0.00 0.00 2.90
2507 2717 5.789643 ACAATAAACCAAGCAACATCTGT 57.210 34.783 0.00 0.00 0.00 3.41
2508 2718 6.160576 ACAATAAACCAAGCAACATCTGTT 57.839 33.333 0.00 0.00 39.12 3.16
2509 2719 6.581712 ACAATAAACCAAGCAACATCTGTTT 58.418 32.000 0.00 0.00 35.83 2.83
2510 2720 6.701400 ACAATAAACCAAGCAACATCTGTTTC 59.299 34.615 0.00 0.00 35.83 2.78
2511 2721 3.733443 AACCAAGCAACATCTGTTTCC 57.267 42.857 0.00 0.00 35.83 3.13
2512 2722 2.949447 ACCAAGCAACATCTGTTTCCT 58.051 42.857 0.00 0.00 35.83 3.36
2513 2723 4.098914 ACCAAGCAACATCTGTTTCCTA 57.901 40.909 0.00 0.00 35.83 2.94
2514 2724 3.821033 ACCAAGCAACATCTGTTTCCTAC 59.179 43.478 0.00 0.00 35.83 3.18
2515 2725 3.820467 CCAAGCAACATCTGTTTCCTACA 59.180 43.478 0.00 0.00 35.83 2.74
2516 2726 4.278170 CCAAGCAACATCTGTTTCCTACAA 59.722 41.667 0.00 0.00 36.02 2.41
2517 2727 5.455392 CAAGCAACATCTGTTTCCTACAAG 58.545 41.667 0.00 0.00 36.02 3.16
2518 2728 4.973168 AGCAACATCTGTTTCCTACAAGA 58.027 39.130 0.00 0.00 36.02 3.02
2519 2729 5.376625 AGCAACATCTGTTTCCTACAAGAA 58.623 37.500 0.00 0.00 36.02 2.52
2520 2730 5.471456 AGCAACATCTGTTTCCTACAAGAAG 59.529 40.000 0.00 0.00 36.02 2.85
2521 2731 5.239525 GCAACATCTGTTTCCTACAAGAAGT 59.760 40.000 0.00 0.00 36.02 3.01
2522 2732 6.662616 CAACATCTGTTTCCTACAAGAAGTG 58.337 40.000 0.00 0.00 36.02 3.16
2523 2733 6.174720 ACATCTGTTTCCTACAAGAAGTGA 57.825 37.500 0.00 0.00 36.02 3.41
2524 2734 6.773638 ACATCTGTTTCCTACAAGAAGTGAT 58.226 36.000 0.00 0.00 36.02 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.065418 ACTTTAAGGGGCCGACATGAG 60.065 52.381 0.00 0.00 0.00 2.90
36 37 3.640498 GACGAGGGGGCTATTAGTACTTT 59.360 47.826 0.00 0.00 0.00 2.66
41 42 0.184451 TCGACGAGGGGGCTATTAGT 59.816 55.000 0.00 0.00 0.00 2.24
42 43 1.473278 GATCGACGAGGGGGCTATTAG 59.527 57.143 3.01 0.00 0.00 1.73
45 46 1.972223 CGATCGACGAGGGGGCTAT 60.972 63.158 10.26 0.00 45.77 2.97
46 47 2.593725 CGATCGACGAGGGGGCTA 60.594 66.667 10.26 0.00 45.77 3.93
49 50 1.731433 TAAAGCGATCGACGAGGGGG 61.731 60.000 21.57 0.00 45.77 5.40
131 140 3.813529 ACACTGGTTCGTAGTACGTAC 57.186 47.619 21.38 20.85 43.14 3.67
132 141 5.220397 CGATAACACTGGTTCGTAGTACGTA 60.220 44.000 21.38 10.27 43.14 3.57
133 142 4.436050 CGATAACACTGGTTCGTAGTACGT 60.436 45.833 21.38 0.00 43.14 3.57
134 143 4.024438 CGATAACACTGGTTCGTAGTACG 58.976 47.826 16.65 16.65 44.19 3.67
135 144 5.221891 TCGATAACACTGGTTCGTAGTAC 57.778 43.478 0.00 0.00 38.45 2.73
136 145 4.201851 GCTCGATAACACTGGTTCGTAGTA 60.202 45.833 0.00 0.00 38.45 1.82
138 147 3.106672 GCTCGATAACACTGGTTCGTAG 58.893 50.000 0.00 0.00 38.45 3.51
139 148 2.751259 AGCTCGATAACACTGGTTCGTA 59.249 45.455 0.00 0.00 38.45 3.43
140 149 1.544691 AGCTCGATAACACTGGTTCGT 59.455 47.619 0.00 0.00 38.45 3.85
141 150 2.279582 AGCTCGATAACACTGGTTCG 57.720 50.000 0.00 0.00 38.45 3.95
142 151 4.106029 TGTAGCTCGATAACACTGGTTC 57.894 45.455 0.00 0.00 38.45 3.62
143 152 4.737855 ATGTAGCTCGATAACACTGGTT 57.262 40.909 0.00 0.00 41.06 3.67
144 153 4.737855 AATGTAGCTCGATAACACTGGT 57.262 40.909 0.00 0.00 0.00 4.00
145 154 7.715265 ATTAAATGTAGCTCGATAACACTGG 57.285 36.000 0.00 0.00 0.00 4.00
168 183 9.968870 CATATCATCGTCTCATCTCATCATAAT 57.031 33.333 0.00 0.00 0.00 1.28
170 185 8.743085 TCATATCATCGTCTCATCTCATCATA 57.257 34.615 0.00 0.00 0.00 2.15
173 188 8.839343 ACTATCATATCATCGTCTCATCTCATC 58.161 37.037 0.00 0.00 0.00 2.92
187 202 9.702253 ACCGGATTTCTACTACTATCATATCAT 57.298 33.333 9.46 0.00 0.00 2.45
188 203 8.957466 CACCGGATTTCTACTACTATCATATCA 58.043 37.037 9.46 0.00 0.00 2.15
189 204 8.407064 CCACCGGATTTCTACTACTATCATATC 58.593 40.741 9.46 0.00 0.00 1.63
190 205 8.114102 TCCACCGGATTTCTACTACTATCATAT 58.886 37.037 9.46 0.00 0.00 1.78
191 206 7.464273 TCCACCGGATTTCTACTACTATCATA 58.536 38.462 9.46 0.00 0.00 2.15
192 207 6.312529 TCCACCGGATTTCTACTACTATCAT 58.687 40.000 9.46 0.00 0.00 2.45
193 208 5.698104 TCCACCGGATTTCTACTACTATCA 58.302 41.667 9.46 0.00 0.00 2.15
194 209 6.645790 TTCCACCGGATTTCTACTACTATC 57.354 41.667 9.46 0.00 0.00 2.08
195 210 7.613551 AATTCCACCGGATTTCTACTACTAT 57.386 36.000 9.46 0.00 0.00 2.12
196 211 7.270047 CAAATTCCACCGGATTTCTACTACTA 58.730 38.462 9.46 0.00 0.00 1.82
197 212 5.952347 AATTCCACCGGATTTCTACTACT 57.048 39.130 9.46 0.00 0.00 2.57
198 213 5.296035 CCAAATTCCACCGGATTTCTACTAC 59.704 44.000 9.46 0.00 0.00 2.73
199 214 5.433526 CCAAATTCCACCGGATTTCTACTA 58.566 41.667 9.46 0.00 0.00 1.82
200 215 4.270008 CCAAATTCCACCGGATTTCTACT 58.730 43.478 9.46 0.00 0.00 2.57
201 216 3.380320 CCCAAATTCCACCGGATTTCTAC 59.620 47.826 9.46 0.00 0.00 2.59
208 223 2.360600 CGCCCAAATTCCACCGGA 60.361 61.111 9.46 0.00 0.00 5.14
225 240 4.508662 ACTCATTACTAGAACCTGCAAGC 58.491 43.478 0.00 0.00 0.00 4.01
242 257 3.379372 GTCCAACAATGCATGCTACTCAT 59.621 43.478 20.33 0.00 35.31 2.90
243 258 2.749076 GTCCAACAATGCATGCTACTCA 59.251 45.455 20.33 0.00 0.00 3.41
244 259 2.223112 CGTCCAACAATGCATGCTACTC 60.223 50.000 20.33 0.00 0.00 2.59
245 260 1.739466 CGTCCAACAATGCATGCTACT 59.261 47.619 20.33 0.25 0.00 2.57
246 261 1.795162 GCGTCCAACAATGCATGCTAC 60.795 52.381 20.33 3.53 0.00 3.58
247 262 0.451383 GCGTCCAACAATGCATGCTA 59.549 50.000 20.33 5.73 0.00 3.49
248 263 1.213537 GCGTCCAACAATGCATGCT 59.786 52.632 20.33 1.07 0.00 3.79
266 281 5.119279 CCGTGAAGCATAATTAAGAGATCGG 59.881 44.000 0.00 0.00 0.00 4.18
267 282 5.692204 ACCGTGAAGCATAATTAAGAGATCG 59.308 40.000 0.00 0.00 0.00 3.69
268 283 6.480320 ACACCGTGAAGCATAATTAAGAGATC 59.520 38.462 5.28 0.00 0.00 2.75
336 364 2.363795 TCGGCTCGGGAAGGTGAT 60.364 61.111 0.00 0.00 0.00 3.06
443 502 1.586578 CGAGTTATTGCACGTACGCAT 59.413 47.619 16.72 5.16 42.62 4.73
460 543 6.600246 TTGTGTCTAGTATGCTAGTACGAG 57.400 41.667 16.31 0.00 43.86 4.18
462 545 5.206299 GCTTGTGTCTAGTATGCTAGTACG 58.794 45.833 16.31 7.67 43.86 3.67
465 548 5.661056 TTGCTTGTGTCTAGTATGCTAGT 57.339 39.130 16.31 0.00 43.86 2.57
467 550 5.874810 CCTTTTGCTTGTGTCTAGTATGCTA 59.125 40.000 0.00 0.00 0.00 3.49
468 551 4.697352 CCTTTTGCTTGTGTCTAGTATGCT 59.303 41.667 0.00 0.00 0.00 3.79
469 552 4.142600 CCCTTTTGCTTGTGTCTAGTATGC 60.143 45.833 0.00 0.00 0.00 3.14
472 555 4.101898 TCACCCTTTTGCTTGTGTCTAGTA 59.898 41.667 0.00 0.00 0.00 1.82
473 556 3.118038 TCACCCTTTTGCTTGTGTCTAGT 60.118 43.478 0.00 0.00 0.00 2.57
474 557 3.476552 TCACCCTTTTGCTTGTGTCTAG 58.523 45.455 0.00 0.00 0.00 2.43
475 558 3.569194 TCACCCTTTTGCTTGTGTCTA 57.431 42.857 0.00 0.00 0.00 2.59
476 559 2.435372 TCACCCTTTTGCTTGTGTCT 57.565 45.000 0.00 0.00 0.00 3.41
477 560 3.733443 ATTCACCCTTTTGCTTGTGTC 57.267 42.857 0.00 0.00 0.00 3.67
509 593 1.149361 GGTAAATCGCGATCCGTGCA 61.149 55.000 23.92 1.12 37.28 4.57
612 703 4.954970 ACGCAACTGGGCCTGGTG 62.955 66.667 22.85 22.85 0.00 4.17
613 704 4.204028 AACGCAACTGGGCCTGGT 62.204 61.111 15.36 5.02 0.00 4.00
754 872 2.260434 GTGTGCTGGGCATTGCTG 59.740 61.111 8.82 0.89 41.91 4.41
755 873 2.993264 GGTGTGCTGGGCATTGCT 60.993 61.111 8.82 0.00 41.91 3.91
756 874 4.424566 CGGTGTGCTGGGCATTGC 62.425 66.667 0.00 0.00 41.91 3.56
757 875 4.424566 GCGGTGTGCTGGGCATTG 62.425 66.667 0.00 0.00 41.91 2.82
768 886 2.280592 GGTTCGGTTCAGCGGTGT 60.281 61.111 15.22 0.00 0.00 4.16
850 972 1.502190 GCCCTTTTGTACTCGCAGC 59.498 57.895 0.00 0.00 0.00 5.25
852 974 1.669760 CGGCCCTTTTGTACTCGCA 60.670 57.895 0.00 0.00 0.00 5.10
921 1050 3.844090 GGGGAGAGTGAGAGCGCC 61.844 72.222 2.29 0.00 0.00 6.53
945 1074 4.106925 GCTCTGGTGCAGGGGAGG 62.107 72.222 10.44 0.00 31.62 4.30
948 1077 2.906458 CTAGCTCTGGTGCAGGGG 59.094 66.667 0.00 0.00 31.62 4.79
951 1080 4.517292 CTGCTAGCTCTGGTGCAG 57.483 61.111 17.23 0.00 45.15 4.41
952 1081 1.611474 CCTCTGCTAGCTCTGGTGCA 61.611 60.000 17.23 0.00 34.99 4.57
953 1082 1.143620 CCTCTGCTAGCTCTGGTGC 59.856 63.158 17.23 0.00 0.00 5.01
955 1084 0.396974 CCTCCTCTGCTAGCTCTGGT 60.397 60.000 17.23 0.00 0.00 4.00
957 1086 1.747325 GCCCTCCTCTGCTAGCTCTG 61.747 65.000 17.23 6.45 0.00 3.35
958 1087 1.457455 GCCCTCCTCTGCTAGCTCT 60.457 63.158 17.23 0.00 0.00 4.09
959 1088 1.457455 AGCCCTCCTCTGCTAGCTC 60.457 63.158 17.23 0.00 35.69 4.09
960 1089 1.457455 GAGCCCTCCTCTGCTAGCT 60.457 63.158 17.23 0.00 38.11 3.32
961 1090 3.137687 GAGCCCTCCTCTGCTAGC 58.862 66.667 8.10 8.10 38.11 3.42
971 1100 0.536460 CTAGAGTCCGGAGAGCCCTC 60.536 65.000 3.06 7.78 38.70 4.30
972 1101 1.534697 CTAGAGTCCGGAGAGCCCT 59.465 63.158 3.06 0.00 0.00 5.19
973 1102 2.197605 GCTAGAGTCCGGAGAGCCC 61.198 68.421 3.06 0.00 0.00 5.19
985 1114 4.976925 CATGGCGCCCGGCTAGAG 62.977 72.222 26.77 0.21 42.94 2.43
987 1116 4.545706 TTCATGGCGCCCGGCTAG 62.546 66.667 26.77 7.27 42.94 3.42
988 1117 4.545706 CTTCATGGCGCCCGGCTA 62.546 66.667 26.77 4.49 42.94 3.93
998 1127 2.124570 CCCTGGTCCGCTTCATGG 60.125 66.667 0.00 0.00 0.00 3.66
1314 1449 1.313091 CGTCCATCTCGTCCCACTCA 61.313 60.000 0.00 0.00 0.00 3.41
1579 1717 2.202810 CTCTCGAAGCGGAAGGCC 60.203 66.667 0.00 0.00 45.17 5.19
1587 1725 7.209471 TCCTATCTAATTTCTCTCTCGAAGC 57.791 40.000 0.00 0.00 0.00 3.86
1602 1743 4.186077 AGTGGTAGCAGCTCCTATCTAA 57.814 45.455 0.00 0.00 0.00 2.10
1625 1795 1.732259 CCTGTACCGCAAAAGCACTAG 59.268 52.381 0.00 0.00 0.00 2.57
1673 1854 3.448686 CTCGCCTAAGGTGACATTAGTG 58.551 50.000 14.85 7.91 37.29 2.74
1684 1865 1.284408 CTAGCTCGCTCGCCTAAGG 59.716 63.158 0.00 0.00 0.00 2.69
1685 1866 0.382515 AACTAGCTCGCTCGCCTAAG 59.617 55.000 0.00 0.00 0.00 2.18
1695 1876 5.175856 GCATAACATCTGGTTAACTAGCTCG 59.824 44.000 13.78 7.21 44.70 5.03
1700 1881 6.176896 TGCTTGCATAACATCTGGTTAACTA 58.823 36.000 5.42 0.00 44.70 2.24
1702 1883 5.309323 TGCTTGCATAACATCTGGTTAAC 57.691 39.130 0.00 0.00 44.70 2.01
1703 1884 5.622007 GCTTGCTTGCATAACATCTGGTTAA 60.622 40.000 0.00 0.00 44.70 2.01
1704 1885 4.142403 GCTTGCTTGCATAACATCTGGTTA 60.142 41.667 0.00 0.00 45.55 2.85
1705 1886 3.367703 GCTTGCTTGCATAACATCTGGTT 60.368 43.478 0.00 0.00 43.62 3.67
1707 1888 2.164827 TGCTTGCTTGCATAACATCTGG 59.835 45.455 0.00 0.00 38.12 3.86
1708 1889 3.497297 TGCTTGCTTGCATAACATCTG 57.503 42.857 0.00 0.00 38.12 2.90
1709 1890 4.524316 TTTGCTTGCTTGCATAACATCT 57.476 36.364 5.15 0.00 42.96 2.90
1710 1891 4.925054 TCTTTTGCTTGCTTGCATAACATC 59.075 37.500 5.15 0.00 42.96 3.06
1711 1892 4.885413 TCTTTTGCTTGCTTGCATAACAT 58.115 34.783 5.15 0.00 42.96 2.71
1712 1893 4.319139 TCTTTTGCTTGCTTGCATAACA 57.681 36.364 5.15 0.00 42.96 2.41
1713 1894 4.984161 TCTTCTTTTGCTTGCTTGCATAAC 59.016 37.500 5.15 0.00 42.96 1.89
1714 1895 5.199024 TCTTCTTTTGCTTGCTTGCATAA 57.801 34.783 5.15 6.22 42.96 1.90
1715 1896 4.852134 TCTTCTTTTGCTTGCTTGCATA 57.148 36.364 5.15 0.00 42.96 3.14
1716 1897 3.738830 TCTTCTTTTGCTTGCTTGCAT 57.261 38.095 5.15 0.00 42.96 3.96
1717 1898 3.130869 TCTTCTTCTTTTGCTTGCTTGCA 59.869 39.130 0.27 0.27 41.65 4.08
1718 1899 3.709987 TCTTCTTCTTTTGCTTGCTTGC 58.290 40.909 0.00 0.00 0.00 4.01
1719 1900 6.651755 TTTTCTTCTTCTTTTGCTTGCTTG 57.348 33.333 0.00 0.00 0.00 4.01
1720 1901 7.854557 ATTTTTCTTCTTCTTTTGCTTGCTT 57.145 28.000 0.00 0.00 0.00 3.91
1721 1902 7.677982 GCAATTTTTCTTCTTCTTTTGCTTGCT 60.678 33.333 0.00 0.00 36.27 3.91
1731 1915 3.609409 GCCGTCGCAATTTTTCTTCTTCT 60.609 43.478 0.00 0.00 34.03 2.85
1732 1916 2.656897 GCCGTCGCAATTTTTCTTCTTC 59.343 45.455 0.00 0.00 34.03 2.87
1734 1918 1.399727 CGCCGTCGCAATTTTTCTTCT 60.400 47.619 0.00 0.00 34.03 2.85
1735 1919 0.974836 CGCCGTCGCAATTTTTCTTC 59.025 50.000 0.00 0.00 34.03 2.87
1759 1943 2.100605 AGAAGAGGGCACGTGAAATC 57.899 50.000 22.23 12.74 0.00 2.17
1822 2008 3.005554 AGAACGCACATGAGAATGGAAG 58.994 45.455 0.00 0.00 0.00 3.46
1823 2009 3.002791 GAGAACGCACATGAGAATGGAA 58.997 45.455 0.00 0.00 0.00 3.53
1824 2010 2.621338 GAGAACGCACATGAGAATGGA 58.379 47.619 0.00 0.00 0.00 3.41
1835 2021 3.455685 CGTTACCGGAGAACGCAC 58.544 61.111 25.42 5.27 42.68 5.34
1862 2048 4.648307 CCTAATACCAAGAACTACTCCGGT 59.352 45.833 0.00 0.00 37.80 5.28
1870 2056 5.499004 TGCAAGTCCTAATACCAAGAACT 57.501 39.130 0.00 0.00 0.00 3.01
1885 2071 1.814394 TGCTGTGATGGAATGCAAGTC 59.186 47.619 0.00 0.00 0.00 3.01
1886 2072 1.913778 TGCTGTGATGGAATGCAAGT 58.086 45.000 0.00 0.00 0.00 3.16
1887 2073 2.602878 GTTGCTGTGATGGAATGCAAG 58.397 47.619 0.00 0.00 43.00 4.01
1888 2074 1.068402 CGTTGCTGTGATGGAATGCAA 60.068 47.619 0.00 0.00 40.65 4.08
1889 2075 0.522626 CGTTGCTGTGATGGAATGCA 59.477 50.000 0.00 0.00 0.00 3.96
1890 2076 0.799534 GCGTTGCTGTGATGGAATGC 60.800 55.000 0.00 0.00 41.53 3.56
1891 2077 0.522626 TGCGTTGCTGTGATGGAATG 59.477 50.000 0.00 0.00 0.00 2.67
1892 2078 0.523072 GTGCGTTGCTGTGATGGAAT 59.477 50.000 0.00 0.00 0.00 3.01
1893 2079 0.817229 TGTGCGTTGCTGTGATGGAA 60.817 50.000 0.00 0.00 0.00 3.53
1894 2080 0.817229 TTGTGCGTTGCTGTGATGGA 60.817 50.000 0.00 0.00 0.00 3.41
1895 2081 0.030504 TTTGTGCGTTGCTGTGATGG 59.969 50.000 0.00 0.00 0.00 3.51
1896 2082 1.122849 GTTTGTGCGTTGCTGTGATG 58.877 50.000 0.00 0.00 0.00 3.07
1897 2083 0.316937 CGTTTGTGCGTTGCTGTGAT 60.317 50.000 0.00 0.00 0.00 3.06
1898 2084 1.061729 CGTTTGTGCGTTGCTGTGA 59.938 52.632 0.00 0.00 0.00 3.58
1899 2085 0.925267 CTCGTTTGTGCGTTGCTGTG 60.925 55.000 0.00 0.00 0.00 3.66
1900 2086 1.351707 CTCGTTTGTGCGTTGCTGT 59.648 52.632 0.00 0.00 0.00 4.40
1901 2087 1.369209 CCTCGTTTGTGCGTTGCTG 60.369 57.895 0.00 0.00 0.00 4.41
1902 2088 2.542907 CCCTCGTTTGTGCGTTGCT 61.543 57.895 0.00 0.00 0.00 3.91
1903 2089 2.051345 CCCTCGTTTGTGCGTTGC 60.051 61.111 0.00 0.00 0.00 4.17
1904 2090 2.051345 GCCCTCGTTTGTGCGTTG 60.051 61.111 0.00 0.00 0.00 4.10
1905 2091 2.203153 AGCCCTCGTTTGTGCGTT 60.203 55.556 0.00 0.00 0.00 4.84
1906 2092 2.665185 GAGCCCTCGTTTGTGCGT 60.665 61.111 0.00 0.00 0.00 5.24
1907 2093 3.423154 GGAGCCCTCGTTTGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
1908 2094 2.032681 AGGAGCCCTCGTTTGTGC 59.967 61.111 0.00 0.00 0.00 4.57
1909 2095 0.951040 GACAGGAGCCCTCGTTTGTG 60.951 60.000 4.27 0.00 0.00 3.33
1910 2096 1.371558 GACAGGAGCCCTCGTTTGT 59.628 57.895 0.00 0.41 0.00 2.83
1911 2097 1.376037 GGACAGGAGCCCTCGTTTG 60.376 63.158 0.00 0.00 0.00 2.93
1912 2098 1.536662 AGGACAGGAGCCCTCGTTT 60.537 57.895 0.00 0.00 0.00 3.60
1913 2099 2.120718 AGGACAGGAGCCCTCGTT 59.879 61.111 0.00 0.00 0.00 3.85
1914 2100 2.681778 CAGGACAGGAGCCCTCGT 60.682 66.667 0.00 0.00 0.00 4.18
1915 2101 2.681778 ACAGGACAGGAGCCCTCG 60.682 66.667 0.00 0.00 0.00 4.63
1916 2102 2.664081 CCACAGGACAGGAGCCCTC 61.664 68.421 0.00 0.00 0.00 4.30
1917 2103 2.608988 CCACAGGACAGGAGCCCT 60.609 66.667 0.00 0.00 0.00 5.19
1918 2104 3.721706 CCCACAGGACAGGAGCCC 61.722 72.222 0.00 0.00 33.47 5.19
1919 2105 2.930562 ACCCACAGGACAGGAGCC 60.931 66.667 0.00 0.00 36.73 4.70
1920 2106 2.348998 CACCCACAGGACAGGAGC 59.651 66.667 0.00 0.00 36.73 4.70
1921 2107 3.072476 CCACCCACAGGACAGGAG 58.928 66.667 0.00 0.00 36.73 3.69
1922 2108 3.249189 GCCACCCACAGGACAGGA 61.249 66.667 0.00 0.00 36.73 3.86
1923 2109 2.638981 TTTGCCACCCACAGGACAGG 62.639 60.000 0.00 0.00 36.73 4.00
1924 2110 1.152777 TTTGCCACCCACAGGACAG 60.153 57.895 0.00 0.00 36.73 3.51
1925 2111 1.454847 GTTTGCCACCCACAGGACA 60.455 57.895 0.00 0.00 36.73 4.02
1926 2112 1.152756 AGTTTGCCACCCACAGGAC 60.153 57.895 0.00 0.00 36.73 3.85
1927 2113 1.152777 CAGTTTGCCACCCACAGGA 60.153 57.895 0.00 0.00 36.73 3.86
1928 2114 2.859981 GCAGTTTGCCACCCACAGG 61.860 63.158 0.00 0.00 37.42 4.00
1929 2115 2.126596 TGCAGTTTGCCACCCACAG 61.127 57.895 0.00 0.00 44.23 3.66
1930 2116 2.043551 TGCAGTTTGCCACCCACA 60.044 55.556 0.00 0.00 44.23 4.17
1931 2117 2.354074 CTGTGCAGTTTGCCACCCAC 62.354 60.000 0.00 0.00 44.23 4.61
1932 2118 2.043551 TGTGCAGTTTGCCACCCA 60.044 55.556 0.00 0.00 44.23 4.51
1933 2119 2.127232 ACTGTGCAGTTTGCCACCC 61.127 57.895 0.00 0.00 44.23 4.61
1934 2120 1.066257 CACTGTGCAGTTTGCCACC 59.934 57.895 1.57 0.00 44.23 4.61
1935 2121 1.589727 GCACTGTGCAGTTTGCCAC 60.590 57.895 26.70 0.00 44.23 5.01
1936 2122 2.806929 GCACTGTGCAGTTTGCCA 59.193 55.556 26.70 0.00 44.23 4.92
1946 2132 1.357690 CCAACTGCACTGCACTGTG 59.642 57.895 2.76 2.76 40.62 3.66
1947 2133 0.680921 AACCAACTGCACTGCACTGT 60.681 50.000 0.00 0.00 33.79 3.55
1948 2134 0.029834 GAACCAACTGCACTGCACTG 59.970 55.000 0.00 0.61 33.79 3.66
1949 2135 1.103398 GGAACCAACTGCACTGCACT 61.103 55.000 0.00 0.00 33.79 4.40
1967 2153 0.378257 CCGCTCCATTGAAACGATGG 59.622 55.000 10.75 10.75 44.39 3.51
1969 2155 0.251916 TCCCGCTCCATTGAAACGAT 59.748 50.000 0.00 0.00 0.00 3.73
1992 2178 2.750637 CAGGCAGAGGCAGGCTTG 60.751 66.667 0.00 0.00 43.71 4.01
1993 2179 2.838467 AACAGGCAGAGGCAGGCTT 61.838 57.895 0.00 0.00 43.71 4.35
2029 2215 0.882484 CGCAAACCCGCCCAAATTTT 60.882 50.000 0.00 0.00 0.00 1.82
2051 2257 1.438710 CGTTCTTGCTCCGTTTGCG 60.439 57.895 0.00 0.00 37.95 4.85
2054 2260 2.604174 CGCCGTTCTTGCTCCGTTT 61.604 57.895 0.00 0.00 0.00 3.60
2065 2271 3.488090 CCTTTCTCCGCGCCGTTC 61.488 66.667 0.00 0.00 0.00 3.95
2083 2289 1.648467 GAAATTCAGGAGCGCCGCTT 61.648 55.000 15.07 0.00 39.88 4.68
2108 2314 1.668151 GAACGCACTCCACCTCCAC 60.668 63.158 0.00 0.00 0.00 4.02
2125 2331 0.251698 TGGCATTTGCTGACATGGGA 60.252 50.000 2.12 0.00 38.24 4.37
2127 2333 1.179152 TCTGGCATTTGCTGACATGG 58.821 50.000 2.12 0.00 43.73 3.66
2128 2334 3.444916 GATTCTGGCATTTGCTGACATG 58.555 45.455 2.12 0.00 43.73 3.21
2129 2335 2.098607 CGATTCTGGCATTTGCTGACAT 59.901 45.455 2.12 0.08 43.73 3.06
2150 2360 2.391879 ACAGAGTTACAGAAACGACGC 58.608 47.619 0.00 0.00 43.29 5.19
2187 2397 1.851021 TTTGCTGACATGGGAACGCG 61.851 55.000 3.53 3.53 0.00 6.01
2207 2417 2.965147 GCAACGCGATTCAGCCACA 61.965 57.895 15.93 0.00 0.00 4.17
2208 2418 2.187599 AAGCAACGCGATTCAGCCAC 62.188 55.000 15.93 0.00 0.00 5.01
2209 2419 1.965930 AAGCAACGCGATTCAGCCA 60.966 52.632 15.93 0.00 0.00 4.75
2243 2453 0.657840 ACGAAGTGCAACAGCTGTTC 59.342 50.000 28.97 21.92 42.51 3.18
2245 2455 1.867233 CTTACGAAGTGCAACAGCTGT 59.133 47.619 15.25 15.25 45.73 4.40
2248 2458 2.135933 ACTCTTACGAAGTGCAACAGC 58.864 47.619 0.00 0.00 45.73 4.40
2249 2459 4.923871 ACATACTCTTACGAAGTGCAACAG 59.076 41.667 0.00 0.00 45.73 3.16
2250 2460 4.878439 ACATACTCTTACGAAGTGCAACA 58.122 39.130 0.00 0.00 45.73 3.33
2251 2461 6.939551 TTACATACTCTTACGAAGTGCAAC 57.060 37.500 0.00 0.00 45.73 4.17
2262 2472 9.563898 CAACTGAACGTACATTACATACTCTTA 57.436 33.333 0.00 0.00 0.00 2.10
2266 2476 6.160684 TGCAACTGAACGTACATTACATACT 58.839 36.000 0.00 0.00 0.00 2.12
2269 2479 4.142902 GCTGCAACTGAACGTACATTACAT 60.143 41.667 0.00 0.00 0.00 2.29
2273 2483 2.032030 GTGCTGCAACTGAACGTACATT 60.032 45.455 2.77 0.00 0.00 2.71
2277 2487 1.827315 GCGTGCTGCAACTGAACGTA 61.827 55.000 2.77 0.00 45.45 3.57
2291 2501 0.109964 TATTTCAACCTTGCGCGTGC 60.110 50.000 15.48 15.48 43.20 5.34
2292 2502 2.542766 ATATTTCAACCTTGCGCGTG 57.457 45.000 8.43 0.00 0.00 5.34
2293 2503 4.688511 TTTATATTTCAACCTTGCGCGT 57.311 36.364 8.43 0.00 0.00 6.01
2294 2504 4.264380 GGTTTTATATTTCAACCTTGCGCG 59.736 41.667 0.00 0.00 37.56 6.86
2295 2505 4.264380 CGGTTTTATATTTCAACCTTGCGC 59.736 41.667 0.00 0.00 38.28 6.09
2296 2506 4.264380 GCGGTTTTATATTTCAACCTTGCG 59.736 41.667 8.14 0.00 38.28 4.85
2297 2507 5.164954 TGCGGTTTTATATTTCAACCTTGC 58.835 37.500 8.14 6.26 38.28 4.01
2298 2508 6.616947 TCTGCGGTTTTATATTTCAACCTTG 58.383 36.000 0.00 0.00 38.28 3.61
2331 2541 3.964031 ACAAAACCACATTAGGGCTTGAA 59.036 39.130 0.00 0.00 32.07 2.69
2337 2547 5.890424 AATCGTACAAAACCACATTAGGG 57.110 39.130 0.00 0.00 0.00 3.53
2341 2551 9.849166 CCTATAAAAATCGTACAAAACCACATT 57.151 29.630 0.00 0.00 0.00 2.71
2342 2552 9.233649 TCCTATAAAAATCGTACAAAACCACAT 57.766 29.630 0.00 0.00 0.00 3.21
2344 2554 8.505625 TGTCCTATAAAAATCGTACAAAACCAC 58.494 33.333 0.00 0.00 0.00 4.16
2393 2603 8.695456 CCACTATACAAAATCAAAGGGCTTTAT 58.305 33.333 0.00 0.00 0.00 1.40
2394 2604 7.891183 TCCACTATACAAAATCAAAGGGCTTTA 59.109 33.333 0.00 0.00 0.00 1.85
2395 2605 6.723977 TCCACTATACAAAATCAAAGGGCTTT 59.276 34.615 0.00 0.00 0.00 3.51
2396 2606 6.252995 TCCACTATACAAAATCAAAGGGCTT 58.747 36.000 0.00 0.00 0.00 4.35
2397 2607 5.826643 TCCACTATACAAAATCAAAGGGCT 58.173 37.500 0.00 0.00 0.00 5.19
2398 2608 6.715347 ATCCACTATACAAAATCAAAGGGC 57.285 37.500 0.00 0.00 0.00 5.19
2399 2609 8.292444 TGAATCCACTATACAAAATCAAAGGG 57.708 34.615 0.00 0.00 0.00 3.95
2400 2610 9.740239 CATGAATCCACTATACAAAATCAAAGG 57.260 33.333 0.00 0.00 0.00 3.11
2403 2613 9.685276 AGACATGAATCCACTATACAAAATCAA 57.315 29.630 0.00 0.00 0.00 2.57
2404 2614 9.685276 AAGACATGAATCCACTATACAAAATCA 57.315 29.630 0.00 0.00 0.00 2.57
2406 2616 9.125026 GGAAGACATGAATCCACTATACAAAAT 57.875 33.333 0.00 0.00 33.30 1.82
2407 2617 8.106462 TGGAAGACATGAATCCACTATACAAAA 58.894 33.333 12.65 0.00 38.30 2.44
2408 2618 7.629157 TGGAAGACATGAATCCACTATACAAA 58.371 34.615 12.65 0.00 38.30 2.83
2409 2619 7.194112 TGGAAGACATGAATCCACTATACAA 57.806 36.000 12.65 0.00 38.30 2.41
2410 2620 6.806668 TGGAAGACATGAATCCACTATACA 57.193 37.500 12.65 0.00 38.30 2.29
2411 2621 7.386299 GTGATGGAAGACATGAATCCACTATAC 59.614 40.741 17.03 11.53 45.47 1.47
2412 2622 7.071071 TGTGATGGAAGACATGAATCCACTATA 59.929 37.037 17.03 8.14 45.47 1.31
2413 2623 6.126681 TGTGATGGAAGACATGAATCCACTAT 60.127 38.462 17.03 5.98 45.47 2.12
2414 2624 5.189539 TGTGATGGAAGACATGAATCCACTA 59.810 40.000 17.03 9.28 45.47 2.74
2415 2625 4.019051 TGTGATGGAAGACATGAATCCACT 60.019 41.667 17.03 9.45 45.47 4.00
2416 2626 4.264253 TGTGATGGAAGACATGAATCCAC 58.736 43.478 17.03 12.71 45.47 4.02
2417 2627 4.573021 TGTGATGGAAGACATGAATCCA 57.427 40.909 17.01 17.01 46.60 3.41
2418 2628 6.938596 TGATATGTGATGGAAGACATGAATCC 59.061 38.462 0.00 4.44 40.72 3.01
2419 2629 7.974482 TGATATGTGATGGAAGACATGAATC 57.026 36.000 0.00 0.00 40.72 2.52
2420 2630 8.756486 TTTGATATGTGATGGAAGACATGAAT 57.244 30.769 0.00 0.00 40.72 2.57
2421 2631 8.048514 TCTTTGATATGTGATGGAAGACATGAA 58.951 33.333 0.00 0.00 40.72 2.57
2422 2632 7.567458 TCTTTGATATGTGATGGAAGACATGA 58.433 34.615 0.00 0.00 40.72 3.07
2423 2633 7.520131 GCTCTTTGATATGTGATGGAAGACATG 60.520 40.741 0.00 0.00 40.72 3.21
2424 2634 6.485984 GCTCTTTGATATGTGATGGAAGACAT 59.514 38.462 0.00 0.00 44.18 3.06
2425 2635 5.819379 GCTCTTTGATATGTGATGGAAGACA 59.181 40.000 0.00 0.00 0.00 3.41
2426 2636 5.819379 TGCTCTTTGATATGTGATGGAAGAC 59.181 40.000 0.00 0.00 0.00 3.01
2427 2637 5.993055 TGCTCTTTGATATGTGATGGAAGA 58.007 37.500 0.00 0.00 0.00 2.87
2428 2638 6.688637 TTGCTCTTTGATATGTGATGGAAG 57.311 37.500 0.00 0.00 0.00 3.46
2429 2639 7.465353 TTTTGCTCTTTGATATGTGATGGAA 57.535 32.000 0.00 0.00 0.00 3.53
2430 2640 7.649533 ATTTTGCTCTTTGATATGTGATGGA 57.350 32.000 0.00 0.00 0.00 3.41
2431 2641 9.976511 AATATTTTGCTCTTTGATATGTGATGG 57.023 29.630 0.00 0.00 0.00 3.51
2435 2645 9.403110 GCCTAATATTTTGCTCTTTGATATGTG 57.597 33.333 0.00 0.00 0.00 3.21
2436 2646 8.579863 GGCCTAATATTTTGCTCTTTGATATGT 58.420 33.333 0.00 0.00 0.00 2.29
2437 2647 7.752239 CGGCCTAATATTTTGCTCTTTGATATG 59.248 37.037 0.00 0.00 0.00 1.78
2438 2648 7.094205 CCGGCCTAATATTTTGCTCTTTGATAT 60.094 37.037 0.00 0.00 0.00 1.63
2439 2649 6.206634 CCGGCCTAATATTTTGCTCTTTGATA 59.793 38.462 0.00 0.00 0.00 2.15
2440 2650 5.010012 CCGGCCTAATATTTTGCTCTTTGAT 59.990 40.000 0.00 0.00 0.00 2.57
2441 2651 4.338118 CCGGCCTAATATTTTGCTCTTTGA 59.662 41.667 0.00 0.00 0.00 2.69
2442 2652 4.338118 TCCGGCCTAATATTTTGCTCTTTG 59.662 41.667 0.00 0.00 0.00 2.77
2443 2653 4.338400 GTCCGGCCTAATATTTTGCTCTTT 59.662 41.667 0.00 0.00 0.00 2.52
2444 2654 3.883489 GTCCGGCCTAATATTTTGCTCTT 59.117 43.478 0.00 0.00 0.00 2.85
2445 2655 3.477530 GTCCGGCCTAATATTTTGCTCT 58.522 45.455 0.00 0.00 0.00 4.09
2446 2656 2.552743 GGTCCGGCCTAATATTTTGCTC 59.447 50.000 0.00 0.00 0.00 4.26
2447 2657 2.583143 GGTCCGGCCTAATATTTTGCT 58.417 47.619 0.00 0.00 0.00 3.91
2459 2669 2.341846 TTTCATCATTAGGTCCGGCC 57.658 50.000 0.00 0.59 37.58 6.13
2460 2670 3.945285 TCTTTTTCATCATTAGGTCCGGC 59.055 43.478 0.00 0.00 0.00 6.13
2461 2671 6.509418 TTTCTTTTTCATCATTAGGTCCGG 57.491 37.500 0.00 0.00 0.00 5.14
2462 2672 7.367285 TGTTTTCTTTTTCATCATTAGGTCCG 58.633 34.615 0.00 0.00 0.00 4.79
2463 2673 9.710900 ATTGTTTTCTTTTTCATCATTAGGTCC 57.289 29.630 0.00 0.00 0.00 4.46
2472 2682 9.650371 GCTTGGTTTATTGTTTTCTTTTTCATC 57.350 29.630 0.00 0.00 0.00 2.92
2473 2683 9.171877 TGCTTGGTTTATTGTTTTCTTTTTCAT 57.828 25.926 0.00 0.00 0.00 2.57
2474 2684 8.553459 TGCTTGGTTTATTGTTTTCTTTTTCA 57.447 26.923 0.00 0.00 0.00 2.69
2475 2685 9.272901 GTTGCTTGGTTTATTGTTTTCTTTTTC 57.727 29.630 0.00 0.00 0.00 2.29
2476 2686 8.787852 TGTTGCTTGGTTTATTGTTTTCTTTTT 58.212 25.926 0.00 0.00 0.00 1.94
2477 2687 8.329203 TGTTGCTTGGTTTATTGTTTTCTTTT 57.671 26.923 0.00 0.00 0.00 2.27
2478 2688 7.913674 TGTTGCTTGGTTTATTGTTTTCTTT 57.086 28.000 0.00 0.00 0.00 2.52
2479 2689 7.986889 AGATGTTGCTTGGTTTATTGTTTTCTT 59.013 29.630 0.00 0.00 0.00 2.52
2480 2690 7.439056 CAGATGTTGCTTGGTTTATTGTTTTCT 59.561 33.333 0.00 0.00 0.00 2.52
2481 2691 7.224557 ACAGATGTTGCTTGGTTTATTGTTTTC 59.775 33.333 0.00 0.00 0.00 2.29
2482 2692 7.047271 ACAGATGTTGCTTGGTTTATTGTTTT 58.953 30.769 0.00 0.00 0.00 2.43
2483 2693 6.581712 ACAGATGTTGCTTGGTTTATTGTTT 58.418 32.000 0.00 0.00 0.00 2.83
2484 2694 6.160576 ACAGATGTTGCTTGGTTTATTGTT 57.839 33.333 0.00 0.00 0.00 2.83
2485 2695 5.789643 ACAGATGTTGCTTGGTTTATTGT 57.210 34.783 0.00 0.00 0.00 2.71
2486 2696 6.146021 GGAAACAGATGTTGCTTGGTTTATTG 59.854 38.462 3.75 0.00 38.44 1.90
2487 2697 6.041979 AGGAAACAGATGTTGCTTGGTTTATT 59.958 34.615 3.75 0.00 38.44 1.40
2488 2698 5.539955 AGGAAACAGATGTTGCTTGGTTTAT 59.460 36.000 3.75 0.00 38.44 1.40
2489 2699 4.892934 AGGAAACAGATGTTGCTTGGTTTA 59.107 37.500 3.75 0.00 38.44 2.01
2490 2700 3.706086 AGGAAACAGATGTTGCTTGGTTT 59.294 39.130 3.75 0.00 38.44 3.27
2491 2701 3.299503 AGGAAACAGATGTTGCTTGGTT 58.700 40.909 3.75 0.00 38.44 3.67
2492 2702 2.949447 AGGAAACAGATGTTGCTTGGT 58.051 42.857 3.75 0.00 38.44 3.67
2493 2703 3.820467 TGTAGGAAACAGATGTTGCTTGG 59.180 43.478 3.75 0.00 38.44 3.61
2494 2704 5.239306 TCTTGTAGGAAACAGATGTTGCTTG 59.761 40.000 3.75 0.00 39.87 4.01
2495 2705 5.376625 TCTTGTAGGAAACAGATGTTGCTT 58.623 37.500 3.75 0.00 39.87 3.91
2496 2706 4.973168 TCTTGTAGGAAACAGATGTTGCT 58.027 39.130 3.75 0.33 39.87 3.91
2497 2707 5.239525 ACTTCTTGTAGGAAACAGATGTTGC 59.760 40.000 0.00 0.00 39.87 4.17
2498 2708 6.483307 TCACTTCTTGTAGGAAACAGATGTTG 59.517 38.462 0.00 0.00 39.87 3.33
2499 2709 6.591935 TCACTTCTTGTAGGAAACAGATGTT 58.408 36.000 0.00 0.00 39.87 2.71
2500 2710 6.174720 TCACTTCTTGTAGGAAACAGATGT 57.825 37.500 0.00 0.00 39.87 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.