Multiple sequence alignment - TraesCS3A01G040900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G040900 chr3A 100.000 2769 0 0 1 2769 21361217 21358449 0.000000e+00 5114.0
1 TraesCS3A01G040900 chr3A 92.344 209 12 4 2323 2528 424089078 424088871 7.500000e-76 294.0
2 TraesCS3A01G040900 chr3A 90.045 221 16 5 2323 2537 446894823 446894603 5.840000e-72 281.0
3 TraesCS3A01G040900 chr7D 93.715 1941 67 30 2 1939 588418947 588420835 0.000000e+00 2857.0
4 TraesCS3A01G040900 chr7D 96.516 287 10 0 1937 2223 588420982 588421268 2.500000e-130 475.0
5 TraesCS3A01G040900 chr7D 91.204 216 16 3 2324 2537 465691654 465691440 9.700000e-75 291.0
6 TraesCS3A01G040900 chr7D 89.630 135 14 0 2632 2766 609170966 609171100 3.670000e-39 172.0
7 TraesCS3A01G040900 chr7D 89.706 68 2 4 1872 1939 588420880 588420942 6.360000e-12 82.4
8 TraesCS3A01G040900 chr7D 97.561 41 1 0 336 376 471213422 471213462 1.380000e-08 71.3
9 TraesCS3A01G040900 chr3B 85.220 1793 163 44 2 1780 781355371 781357075 0.000000e+00 1749.0
10 TraesCS3A01G040900 chr3B 86.808 1084 91 33 810 1888 781494919 781493883 0.000000e+00 1162.0
11 TraesCS3A01G040900 chr3B 84.134 1166 131 30 799 1939 781344469 781345605 0.000000e+00 1079.0
12 TraesCS3A01G040900 chr3B 86.002 1043 94 20 845 1875 781210449 781211451 0.000000e+00 1070.0
13 TraesCS3A01G040900 chr3B 91.379 290 18 5 1937 2223 781362555 781362840 9.300000e-105 390.0
14 TraesCS3A01G040900 chr3B 96.104 77 3 0 666 742 781342959 781343035 2.900000e-25 126.0
15 TraesCS3A01G040900 chr3B 85.577 104 10 4 1776 1875 781362341 781362443 1.360000e-18 104.0
16 TraesCS3A01G040900 chr3B 91.667 48 3 1 180 227 781355586 781355632 6.400000e-07 65.8
17 TraesCS3A01G040900 chr3D 85.618 1481 120 36 404 1875 584129405 584130801 0.000000e+00 1469.0
18 TraesCS3A01G040900 chr3D 87.945 1095 94 18 827 1915 584048670 584049732 0.000000e+00 1256.0
19 TraesCS3A01G040900 chr3D 85.844 1102 104 22 802 1888 584457002 584455938 0.000000e+00 1123.0
20 TraesCS3A01G040900 chr3D 92.823 209 11 4 2323 2528 306029220 306029013 1.610000e-77 300.0
21 TraesCS3A01G040900 chr3D 92.638 163 12 0 1937 2099 584130913 584131075 4.610000e-58 235.0
22 TraesCS3A01G040900 chr3D 91.753 97 4 1 675 771 584048571 584048663 6.220000e-27 132.0
23 TraesCS3A01G040900 chr3D 95.745 47 1 1 180 226 584129266 584129311 1.060000e-09 75.0
24 TraesCS3A01G040900 chrUn 85.294 1122 107 29 802 1888 45483372 45482274 0.000000e+00 1105.0
25 TraesCS3A01G040900 chr1D 92.788 208 13 2 2323 2528 365323990 365323783 1.610000e-77 300.0
26 TraesCS3A01G040900 chr1D 93.548 93 3 2 2212 2301 418174411 418174319 4.810000e-28 135.0
27 TraesCS3A01G040900 chr1D 90.816 98 4 4 2209 2302 418174308 418174404 2.900000e-25 126.0
28 TraesCS3A01G040900 chr7B 92.788 208 9 4 2319 2520 574415423 574415216 2.090000e-76 296.0
29 TraesCS3A01G040900 chr2D 92.381 210 13 3 2322 2528 112871212 112871003 2.090000e-76 296.0
30 TraesCS3A01G040900 chr2D 82.759 174 23 3 54 227 641009409 641009243 6.180000e-32 148.0
31 TraesCS3A01G040900 chr2D 95.402 87 0 3 2222 2304 382442501 382442415 4.810000e-28 135.0
32 TraesCS3A01G040900 chr4D 90.411 219 20 1 2315 2532 327148076 327147858 1.250000e-73 287.0
33 TraesCS3A01G040900 chr5D 89.823 226 18 5 2317 2537 294416067 294416292 4.510000e-73 285.0
34 TraesCS3A01G040900 chr5A 89.862 217 21 1 2551 2767 608867863 608867648 7.550000e-71 278.0
35 TraesCS3A01G040900 chr2A 81.509 265 36 9 54 315 766214369 766214115 3.610000e-49 206.0
36 TraesCS3A01G040900 chr2A 100.000 78 0 0 2221 2298 341395684 341395607 7.990000e-31 145.0
37 TraesCS3A01G040900 chr4B 95.238 84 2 1 2221 2302 230578037 230577954 6.220000e-27 132.0
38 TraesCS3A01G040900 chr4B 92.222 90 4 2 2212 2298 230577947 230578036 1.040000e-24 124.0
39 TraesCS3A01G040900 chr7A 90.291 103 5 4 2201 2301 40059908 40059809 2.240000e-26 130.0
40 TraesCS3A01G040900 chr4A 94.318 88 0 2 2219 2301 460740127 460740040 2.240000e-26 130.0
41 TraesCS3A01G040900 chr6D 93.333 90 0 3 2215 2298 430139577 430139666 8.050000e-26 128.0
42 TraesCS3A01G040900 chr2B 83.516 91 9 4 231 316 461746907 461746818 2.290000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G040900 chr3A 21358449 21361217 2768 True 5114.000000 5114 100.000000 1 2769 1 chr3A.!!$R1 2768
1 TraesCS3A01G040900 chr7D 588418947 588421268 2321 False 1138.133333 2857 93.312333 2 2223 3 chr7D.!!$F3 2221
2 TraesCS3A01G040900 chr3B 781493883 781494919 1036 True 1162.000000 1162 86.808000 810 1888 1 chr3B.!!$R1 1078
3 TraesCS3A01G040900 chr3B 781210449 781211451 1002 False 1070.000000 1070 86.002000 845 1875 1 chr3B.!!$F1 1030
4 TraesCS3A01G040900 chr3B 781355371 781357075 1704 False 907.400000 1749 88.443500 2 1780 2 chr3B.!!$F3 1778
5 TraesCS3A01G040900 chr3B 781342959 781345605 2646 False 602.500000 1079 90.119000 666 1939 2 chr3B.!!$F2 1273
6 TraesCS3A01G040900 chr3D 584455938 584457002 1064 True 1123.000000 1123 85.844000 802 1888 1 chr3D.!!$R2 1086
7 TraesCS3A01G040900 chr3D 584048571 584049732 1161 False 694.000000 1256 89.849000 675 1915 2 chr3D.!!$F1 1240
8 TraesCS3A01G040900 chr3D 584129266 584131075 1809 False 593.000000 1469 91.333667 180 2099 3 chr3D.!!$F2 1919
9 TraesCS3A01G040900 chrUn 45482274 45483372 1098 True 1105.000000 1105 85.294000 802 1888 1 chrUn.!!$R1 1086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.033011 CCGAGGGAGAGGAAGAGGAA 60.033 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 3252 0.185901 ACAGCTGACCCAACCAACAT 59.814 50.0 23.35 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.007430 TGCAAAATGAACGCATCACAATTTT 59.993 32.000 0.00 0.00 41.93 1.82
37 38 6.853872 TGAACGCATCACAATTTTGTAACTAC 59.146 34.615 0.00 0.00 39.91 2.73
38 39 6.554334 ACGCATCACAATTTTGTAACTACT 57.446 33.333 0.00 0.00 39.91 2.57
39 40 7.661127 ACGCATCACAATTTTGTAACTACTA 57.339 32.000 0.00 0.00 39.91 1.82
40 41 8.263940 ACGCATCACAATTTTGTAACTACTAT 57.736 30.769 0.00 0.00 39.91 2.12
148 149 1.615814 CCGAGGGAGAGGAAGAGGA 59.384 63.158 0.00 0.00 0.00 3.71
149 150 0.033011 CCGAGGGAGAGGAAGAGGAA 60.033 60.000 0.00 0.00 0.00 3.36
150 151 1.398692 CGAGGGAGAGGAAGAGGAAG 58.601 60.000 0.00 0.00 0.00 3.46
151 152 1.341581 CGAGGGAGAGGAAGAGGAAGT 60.342 57.143 0.00 0.00 0.00 3.01
152 153 2.107366 GAGGGAGAGGAAGAGGAAGTG 58.893 57.143 0.00 0.00 0.00 3.16
153 154 1.199615 GGGAGAGGAAGAGGAAGTGG 58.800 60.000 0.00 0.00 0.00 4.00
167 168 2.034221 GTGGGAGACACCAAGGCC 59.966 66.667 0.00 0.00 44.49 5.19
172 173 3.240134 GAGACACCAAGGCCGCTGA 62.240 63.158 9.29 0.00 0.00 4.26
195 196 4.423231 GGGAAGAAGCAACCCCAG 57.577 61.111 0.00 0.00 38.69 4.45
300 302 1.605165 GGATTTTGGGTGGTCGCCA 60.605 57.895 2.81 0.00 0.00 5.69
309 311 0.672711 GGTGGTCGCCAGGTTTAGAC 60.673 60.000 0.00 0.00 32.34 2.59
318 320 1.553248 CCAGGTTTAGACGGATGGACA 59.447 52.381 0.00 0.00 30.36 4.02
325 327 0.544357 AGACGGATGGACAGGGACAA 60.544 55.000 0.00 0.00 0.00 3.18
364 366 1.925972 GAAGGTTGAGGGGAGGGCT 60.926 63.158 0.00 0.00 0.00 5.19
592 596 6.878389 GCGAGACCCTAACTATATACAGTACT 59.122 42.308 0.00 0.00 0.00 2.73
593 597 8.037758 GCGAGACCCTAACTATATACAGTACTA 58.962 40.741 0.00 0.00 0.00 1.82
594 598 9.364989 CGAGACCCTAACTATATACAGTACTAC 57.635 40.741 0.00 0.00 0.00 2.73
633 641 2.063378 CCAGCTCAGACCCCTCTCC 61.063 68.421 0.00 0.00 0.00 3.71
634 642 1.001503 CAGCTCAGACCCCTCTCCT 59.998 63.158 0.00 0.00 0.00 3.69
635 643 1.042559 CAGCTCAGACCCCTCTCCTC 61.043 65.000 0.00 0.00 0.00 3.71
638 646 0.106217 CTCAGACCCCTCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
641 649 1.075600 GACCCCTCTCCTCCTCCAG 60.076 68.421 0.00 0.00 0.00 3.86
642 650 2.445654 CCCCTCTCCTCCTCCAGC 60.446 72.222 0.00 0.00 0.00 4.85
643 651 2.695597 CCCTCTCCTCCTCCAGCT 59.304 66.667 0.00 0.00 0.00 4.24
644 652 1.457455 CCCTCTCCTCCTCCAGCTC 60.457 68.421 0.00 0.00 0.00 4.09
645 653 1.309347 CCTCTCCTCCTCCAGCTCA 59.691 63.158 0.00 0.00 0.00 4.26
646 654 0.756442 CCTCTCCTCCTCCAGCTCAG 60.756 65.000 0.00 0.00 0.00 3.35
647 655 0.258484 CTCTCCTCCTCCAGCTCAGA 59.742 60.000 0.00 0.00 0.00 3.27
648 656 0.033601 TCTCCTCCTCCAGCTCAGAC 60.034 60.000 0.00 0.00 0.00 3.51
649 657 1.000993 TCCTCCTCCAGCTCAGACC 59.999 63.158 0.00 0.00 0.00 3.85
650 658 2.063378 CCTCCTCCAGCTCAGACCC 61.063 68.421 0.00 0.00 0.00 4.46
651 659 1.001503 CTCCTCCAGCTCAGACCCT 59.998 63.158 0.00 0.00 0.00 4.34
652 660 0.260230 CTCCTCCAGCTCAGACCCTA 59.740 60.000 0.00 0.00 0.00 3.53
653 661 0.710588 TCCTCCAGCTCAGACCCTAA 59.289 55.000 0.00 0.00 0.00 2.69
654 662 0.827368 CCTCCAGCTCAGACCCTAAC 59.173 60.000 0.00 0.00 0.00 2.34
655 663 1.621072 CCTCCAGCTCAGACCCTAACT 60.621 57.143 0.00 0.00 0.00 2.24
656 664 1.480137 CTCCAGCTCAGACCCTAACTG 59.520 57.143 0.00 0.00 36.80 3.16
657 665 1.203187 TCCAGCTCAGACCCTAACTGT 60.203 52.381 0.00 0.00 36.81 3.55
658 666 1.625818 CCAGCTCAGACCCTAACTGTT 59.374 52.381 0.00 0.00 36.81 3.16
659 667 2.613977 CCAGCTCAGACCCTAACTGTTG 60.614 54.545 2.69 0.00 36.81 3.33
660 668 1.625818 AGCTCAGACCCTAACTGTTGG 59.374 52.381 2.69 0.00 36.81 3.77
661 669 1.623811 GCTCAGACCCTAACTGTTGGA 59.376 52.381 5.38 0.00 36.81 3.53
662 670 2.237392 GCTCAGACCCTAACTGTTGGAT 59.763 50.000 5.38 0.00 36.81 3.41
663 671 3.451178 GCTCAGACCCTAACTGTTGGATA 59.549 47.826 5.38 0.00 36.81 2.59
800 2208 4.927267 AGATGGTATGGTGGTTGAGAAA 57.073 40.909 0.00 0.00 0.00 2.52
931 2348 0.670546 CAGCTACTTCACCACACGGG 60.671 60.000 0.00 0.00 44.81 5.28
967 2384 2.123897 ACCACACCAACCAGCCAC 60.124 61.111 0.00 0.00 0.00 5.01
1074 2491 2.652530 CTTGCCACGCCATTGCTT 59.347 55.556 0.00 0.00 34.43 3.91
1131 2548 2.706890 GCCGACTACAAATCCCTCAAA 58.293 47.619 0.00 0.00 0.00 2.69
1753 3208 1.139498 TGGAGGCCATCAGGTCCAAA 61.139 55.000 5.01 0.00 41.85 3.28
1758 3213 1.342374 GGCCATCAGGTCCAAATTCCT 60.342 52.381 0.00 0.00 37.19 3.36
1808 3271 0.599558 CATGTTGGTTGGGTCAGCTG 59.400 55.000 7.63 7.63 0.00 4.24
1816 3279 2.034048 TTGGGTCAGCTGTACGTGCA 62.034 55.000 14.67 6.10 0.00 4.57
1868 3336 8.964150 ACGTAAAAGTGCAGTTTTAATTCATTC 58.036 29.630 31.30 19.80 34.46 2.67
1875 3343 6.308766 GTGCAGTTTTAATTCATTCGCTTGAT 59.691 34.615 0.00 0.00 0.00 2.57
2083 3708 6.689554 AGACTTTAGGTAGACTTGTGTTAGC 58.310 40.000 0.00 0.00 0.00 3.09
2170 3795 8.472007 TTTTGTGAGGGTTGTAGTATTTTGAT 57.528 30.769 0.00 0.00 0.00 2.57
2174 3799 8.919145 TGTGAGGGTTGTAGTATTTTGATTTTT 58.081 29.630 0.00 0.00 0.00 1.94
2212 3837 9.941664 CATTTTATACTCTCATCGCTCATTTTT 57.058 29.630 0.00 0.00 0.00 1.94
2223 3848 7.295201 TCATCGCTCATTTTTGTTAGTTGTAC 58.705 34.615 0.00 0.00 0.00 2.90
2224 3849 6.854496 TCGCTCATTTTTGTTAGTTGTACT 57.146 33.333 0.00 0.00 0.00 2.73
2225 3850 6.884187 TCGCTCATTTTTGTTAGTTGTACTC 58.116 36.000 0.00 0.00 0.00 2.59
2226 3851 6.073440 TCGCTCATTTTTGTTAGTTGTACTCC 60.073 38.462 0.00 0.00 0.00 3.85
2227 3852 6.379386 GCTCATTTTTGTTAGTTGTACTCCC 58.621 40.000 0.00 0.00 0.00 4.30
2228 3853 6.206829 GCTCATTTTTGTTAGTTGTACTCCCT 59.793 38.462 0.00 0.00 0.00 4.20
2229 3854 7.573283 GCTCATTTTTGTTAGTTGTACTCCCTC 60.573 40.741 0.00 0.00 0.00 4.30
2230 3855 6.713450 TCATTTTTGTTAGTTGTACTCCCTCC 59.287 38.462 0.00 0.00 0.00 4.30
2231 3856 3.947910 TTGTTAGTTGTACTCCCTCCG 57.052 47.619 0.00 0.00 0.00 4.63
2232 3857 2.880443 TGTTAGTTGTACTCCCTCCGT 58.120 47.619 0.00 0.00 0.00 4.69
2233 3858 3.233507 TGTTAGTTGTACTCCCTCCGTT 58.766 45.455 0.00 0.00 0.00 4.44
2234 3859 3.256631 TGTTAGTTGTACTCCCTCCGTTC 59.743 47.826 0.00 0.00 0.00 3.95
2235 3860 1.264295 AGTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
2236 3861 0.971386 GTTGTACTCCCTCCGTTCCA 59.029 55.000 0.00 0.00 0.00 3.53
2237 3862 1.345415 GTTGTACTCCCTCCGTTCCAA 59.655 52.381 0.00 0.00 0.00 3.53
2238 3863 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2239 3864 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
2240 3865 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
2241 3866 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
2242 3867 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2243 3868 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2244 3869 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2245 3870 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2246 3871 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2247 3872 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2248 3873 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2249 3874 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2250 3875 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2251 3876 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2252 3877 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2253 3878 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2254 3879 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2255 3880 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2256 3881 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2257 3882 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2258 3883 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2259 3884 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2260 3885 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2261 3886 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2262 3887 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2263 3888 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2264 3889 4.630940 ACTCGTCGTGGTTTTAGTTCAAAA 59.369 37.500 0.00 0.00 33.66 2.44
2265 3890 5.122082 ACTCGTCGTGGTTTTAGTTCAAAAA 59.878 36.000 0.00 0.00 37.85 1.94
2284 3909 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2285 3910 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2286 3911 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2287 3912 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2288 3913 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2289 3914 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2290 3915 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2291 3916 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2292 3917 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2293 3918 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2294 3919 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2295 3920 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2296 3921 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2297 3922 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2298 3923 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
2299 3924 4.586306 AATTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
2300 3925 5.703730 AATTTGGAACGGAGGGAGTATTA 57.296 39.130 0.00 0.00 0.00 0.98
2301 3926 4.748277 TTTGGAACGGAGGGAGTATTAG 57.252 45.455 0.00 0.00 0.00 1.73
2302 3927 3.393426 TGGAACGGAGGGAGTATTAGT 57.607 47.619 0.00 0.00 0.00 2.24
2303 3928 3.716431 TGGAACGGAGGGAGTATTAGTT 58.284 45.455 0.00 0.00 0.00 2.24
2304 3929 4.098894 TGGAACGGAGGGAGTATTAGTTT 58.901 43.478 0.00 0.00 0.00 2.66
2305 3930 4.533311 TGGAACGGAGGGAGTATTAGTTTT 59.467 41.667 0.00 0.00 0.00 2.43
2306 3931 5.013391 TGGAACGGAGGGAGTATTAGTTTTT 59.987 40.000 0.00 0.00 0.00 1.94
2332 3957 9.490379 TTCAGAAGTTAAAATTGTACTCTCTCC 57.510 33.333 0.00 0.00 0.00 3.71
2333 3958 7.813148 TCAGAAGTTAAAATTGTACTCTCTCCG 59.187 37.037 0.00 0.00 0.00 4.63
2334 3959 7.599245 CAGAAGTTAAAATTGTACTCTCTCCGT 59.401 37.037 0.00 0.00 0.00 4.69
2335 3960 8.148999 AGAAGTTAAAATTGTACTCTCTCCGTT 58.851 33.333 0.00 0.00 0.00 4.44
2336 3961 8.672823 AAGTTAAAATTGTACTCTCTCCGTTT 57.327 30.769 0.00 0.00 0.00 3.60
2337 3962 8.307921 AGTTAAAATTGTACTCTCTCCGTTTC 57.692 34.615 0.00 0.00 0.00 2.78
2338 3963 8.148999 AGTTAAAATTGTACTCTCTCCGTTTCT 58.851 33.333 0.00 0.00 0.00 2.52
2339 3964 8.771766 GTTAAAATTGTACTCTCTCCGTTTCTT 58.228 33.333 0.00 0.00 0.00 2.52
2340 3965 7.803279 AAAATTGTACTCTCTCCGTTTCTTT 57.197 32.000 0.00 0.00 0.00 2.52
2341 3966 7.803279 AAATTGTACTCTCTCCGTTTCTTTT 57.197 32.000 0.00 0.00 0.00 2.27
2342 3967 7.803279 AATTGTACTCTCTCCGTTTCTTTTT 57.197 32.000 0.00 0.00 0.00 1.94
2343 3968 8.897872 AATTGTACTCTCTCCGTTTCTTTTTA 57.102 30.769 0.00 0.00 0.00 1.52
2344 3969 7.941795 TTGTACTCTCTCCGTTTCTTTTTAG 57.058 36.000 0.00 0.00 0.00 1.85
2345 3970 7.047460 TGTACTCTCTCCGTTTCTTTTTAGT 57.953 36.000 0.00 0.00 0.00 2.24
2346 3971 7.144000 TGTACTCTCTCCGTTTCTTTTTAGTC 58.856 38.462 0.00 0.00 0.00 2.59
2347 3972 6.408107 ACTCTCTCCGTTTCTTTTTAGTCT 57.592 37.500 0.00 0.00 0.00 3.24
2348 3973 6.217294 ACTCTCTCCGTTTCTTTTTAGTCTG 58.783 40.000 0.00 0.00 0.00 3.51
2349 3974 4.989168 TCTCTCCGTTTCTTTTTAGTCTGC 59.011 41.667 0.00 0.00 0.00 4.26
2350 3975 4.699637 TCTCCGTTTCTTTTTAGTCTGCA 58.300 39.130 0.00 0.00 0.00 4.41
2351 3976 5.305585 TCTCCGTTTCTTTTTAGTCTGCAT 58.694 37.500 0.00 0.00 0.00 3.96
2352 3977 6.460781 TCTCCGTTTCTTTTTAGTCTGCATA 58.539 36.000 0.00 0.00 0.00 3.14
2353 3978 7.103641 TCTCCGTTTCTTTTTAGTCTGCATAT 58.896 34.615 0.00 0.00 0.00 1.78
2354 3979 8.255206 TCTCCGTTTCTTTTTAGTCTGCATATA 58.745 33.333 0.00 0.00 0.00 0.86
2355 3980 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
2356 3981 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
2357 3982 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
2369 3994 9.624373 AGTCTGCATATAAGATTTGATCAAAGT 57.376 29.630 24.17 14.86 33.32 2.66
2370 3995 9.875675 GTCTGCATATAAGATTTGATCAAAGTC 57.124 33.333 24.17 19.70 33.32 3.01
2371 3996 9.617523 TCTGCATATAAGATTTGATCAAAGTCA 57.382 29.630 24.17 11.02 33.32 3.41
2555 4180 8.973835 TTGATTTCATATGGTTTACCGTTTTC 57.026 30.769 2.13 0.00 39.43 2.29
2556 4181 7.540299 TGATTTCATATGGTTTACCGTTTTCC 58.460 34.615 2.13 0.00 39.43 3.13
2557 4182 5.900865 TTCATATGGTTTACCGTTTTCCC 57.099 39.130 2.13 0.00 39.43 3.97
2558 4183 4.271661 TCATATGGTTTACCGTTTTCCCC 58.728 43.478 2.13 0.00 39.43 4.81
2559 4184 1.927487 ATGGTTTACCGTTTTCCCCC 58.073 50.000 0.00 0.00 39.43 5.40
2560 4185 0.852155 TGGTTTACCGTTTTCCCCCT 59.148 50.000 0.00 0.00 39.43 4.79
2561 4186 2.061061 TGGTTTACCGTTTTCCCCCTA 58.939 47.619 0.00 0.00 39.43 3.53
2562 4187 2.444766 TGGTTTACCGTTTTCCCCCTAA 59.555 45.455 0.00 0.00 39.43 2.69
2563 4188 3.084039 GGTTTACCGTTTTCCCCCTAAG 58.916 50.000 0.00 0.00 0.00 2.18
2564 4189 2.489329 GTTTACCGTTTTCCCCCTAAGC 59.511 50.000 0.00 0.00 0.00 3.09
2565 4190 1.660242 TACCGTTTTCCCCCTAAGCT 58.340 50.000 0.00 0.00 0.00 3.74
2566 4191 0.327259 ACCGTTTTCCCCCTAAGCTC 59.673 55.000 0.00 0.00 0.00 4.09
2567 4192 0.618981 CCGTTTTCCCCCTAAGCTCT 59.381 55.000 0.00 0.00 0.00 4.09
2568 4193 1.407025 CCGTTTTCCCCCTAAGCTCTC 60.407 57.143 0.00 0.00 0.00 3.20
2569 4194 1.739371 CGTTTTCCCCCTAAGCTCTCG 60.739 57.143 0.00 0.00 0.00 4.04
2570 4195 0.252197 TTTTCCCCCTAAGCTCTCGC 59.748 55.000 0.00 0.00 0.00 5.03
2571 4196 1.956629 TTTCCCCCTAAGCTCTCGCG 61.957 60.000 0.00 0.00 42.32 5.87
2572 4197 3.917760 CCCCCTAAGCTCTCGCGG 61.918 72.222 6.13 0.00 42.32 6.46
2573 4198 4.593864 CCCCTAAGCTCTCGCGGC 62.594 72.222 6.13 0.89 42.32 6.53
2574 4199 3.532155 CCCTAAGCTCTCGCGGCT 61.532 66.667 6.13 3.94 42.32 5.52
2575 4200 2.194212 CCCTAAGCTCTCGCGGCTA 61.194 63.158 6.13 0.00 42.32 3.93
2576 4201 1.284408 CCTAAGCTCTCGCGGCTAG 59.716 63.158 6.13 2.24 42.32 3.42
2577 4202 1.284408 CTAAGCTCTCGCGGCTAGG 59.716 63.158 6.13 0.02 42.32 3.02
2578 4203 2.136196 CTAAGCTCTCGCGGCTAGGG 62.136 65.000 6.13 0.00 42.32 3.53
2579 4204 2.905935 TAAGCTCTCGCGGCTAGGGT 62.906 60.000 6.13 0.00 42.32 4.34
2580 4205 3.839432 GCTCTCGCGGCTAGGGTT 61.839 66.667 6.13 0.00 0.00 4.11
2581 4206 2.893398 CTCTCGCGGCTAGGGTTT 59.107 61.111 6.13 0.00 0.00 3.27
2582 4207 1.218316 CTCTCGCGGCTAGGGTTTT 59.782 57.895 6.13 0.00 0.00 2.43
2583 4208 0.458669 CTCTCGCGGCTAGGGTTTTA 59.541 55.000 6.13 0.00 0.00 1.52
2584 4209 0.174162 TCTCGCGGCTAGGGTTTTAC 59.826 55.000 6.13 0.00 0.00 2.01
2585 4210 0.175073 CTCGCGGCTAGGGTTTTACT 59.825 55.000 6.13 0.00 0.00 2.24
2586 4211 0.174162 TCGCGGCTAGGGTTTTACTC 59.826 55.000 6.13 0.00 0.00 2.59
2587 4212 0.808847 CGCGGCTAGGGTTTTACTCC 60.809 60.000 0.00 0.00 0.00 3.85
2588 4213 0.540454 GCGGCTAGGGTTTTACTCCT 59.460 55.000 0.00 0.00 37.18 3.69
2589 4214 1.472904 GCGGCTAGGGTTTTACTCCTC 60.473 57.143 0.00 0.00 34.75 3.71
2590 4215 1.202382 CGGCTAGGGTTTTACTCCTCG 60.202 57.143 0.00 0.00 34.75 4.63
2591 4216 1.138464 GGCTAGGGTTTTACTCCTCGG 59.862 57.143 0.00 0.00 34.75 4.63
2592 4217 1.472904 GCTAGGGTTTTACTCCTCGGC 60.473 57.143 0.00 0.00 34.75 5.54
2593 4218 0.819582 TAGGGTTTTACTCCTCGGCG 59.180 55.000 0.00 0.00 34.75 6.46
2594 4219 1.449070 GGGTTTTACTCCTCGGCGG 60.449 63.158 7.21 0.00 0.00 6.13
2595 4220 2.104859 GGTTTTACTCCTCGGCGGC 61.105 63.158 7.21 0.00 0.00 6.53
2596 4221 2.125832 TTTTACTCCTCGGCGGCG 60.126 61.111 27.15 27.15 0.00 6.46
2597 4222 2.638354 TTTTACTCCTCGGCGGCGA 61.638 57.895 32.59 32.59 0.00 5.54
2598 4223 1.952102 TTTTACTCCTCGGCGGCGAT 61.952 55.000 34.71 21.88 0.00 4.58
2599 4224 2.345880 TTTACTCCTCGGCGGCGATC 62.346 60.000 34.71 0.00 0.00 3.69
2604 4229 4.933064 CTCGGCGGCGATCCAGTC 62.933 72.222 34.71 0.00 0.00 3.51
2612 4237 4.271816 CGATCCAGTCGCCCCGAG 62.272 72.222 0.00 0.00 44.33 4.63
2613 4238 3.148279 GATCCAGTCGCCCCGAGT 61.148 66.667 0.00 0.00 40.36 4.18
2614 4239 3.140225 GATCCAGTCGCCCCGAGTC 62.140 68.421 0.00 0.00 37.44 3.36
2615 4240 3.663815 ATCCAGTCGCCCCGAGTCT 62.664 63.158 0.00 0.00 37.44 3.24
2616 4241 3.382832 CCAGTCGCCCCGAGTCTT 61.383 66.667 0.00 0.00 37.44 3.01
2617 4242 2.182030 CAGTCGCCCCGAGTCTTC 59.818 66.667 0.00 0.00 37.44 2.87
2618 4243 3.069318 AGTCGCCCCGAGTCTTCC 61.069 66.667 0.00 0.00 34.15 3.46
2619 4244 3.379445 GTCGCCCCGAGTCTTCCA 61.379 66.667 0.00 0.00 36.23 3.53
2620 4245 3.379445 TCGCCCCGAGTCTTCCAC 61.379 66.667 0.00 0.00 0.00 4.02
2621 4246 3.382832 CGCCCCGAGTCTTCCACT 61.383 66.667 0.00 0.00 38.45 4.00
2622 4247 2.943978 CGCCCCGAGTCTTCCACTT 61.944 63.158 0.00 0.00 34.41 3.16
2623 4248 1.079057 GCCCCGAGTCTTCCACTTC 60.079 63.158 0.00 0.00 34.41 3.01
2624 4249 1.827399 GCCCCGAGTCTTCCACTTCA 61.827 60.000 0.00 0.00 34.41 3.02
2625 4250 0.247736 CCCCGAGTCTTCCACTTCAG 59.752 60.000 0.00 0.00 34.41 3.02
2626 4251 0.390472 CCCGAGTCTTCCACTTCAGC 60.390 60.000 0.00 0.00 34.41 4.26
2627 4252 0.390472 CCGAGTCTTCCACTTCAGCC 60.390 60.000 0.00 0.00 34.41 4.85
2628 4253 0.318441 CGAGTCTTCCACTTCAGCCA 59.682 55.000 0.00 0.00 34.41 4.75
2629 4254 1.802069 GAGTCTTCCACTTCAGCCAC 58.198 55.000 0.00 0.00 34.41 5.01
2630 4255 0.398318 AGTCTTCCACTTCAGCCACC 59.602 55.000 0.00 0.00 26.56 4.61
2631 4256 0.398318 GTCTTCCACTTCAGCCACCT 59.602 55.000 0.00 0.00 0.00 4.00
2632 4257 1.623811 GTCTTCCACTTCAGCCACCTA 59.376 52.381 0.00 0.00 0.00 3.08
2633 4258 1.623811 TCTTCCACTTCAGCCACCTAC 59.376 52.381 0.00 0.00 0.00 3.18
2634 4259 0.320374 TTCCACTTCAGCCACCTACG 59.680 55.000 0.00 0.00 0.00 3.51
2635 4260 0.830444 TCCACTTCAGCCACCTACGT 60.830 55.000 0.00 0.00 0.00 3.57
2636 4261 0.389948 CCACTTCAGCCACCTACGTC 60.390 60.000 0.00 0.00 0.00 4.34
2637 4262 0.389948 CACTTCAGCCACCTACGTCC 60.390 60.000 0.00 0.00 0.00 4.79
2638 4263 0.542232 ACTTCAGCCACCTACGTCCT 60.542 55.000 0.00 0.00 0.00 3.85
2639 4264 0.173708 CTTCAGCCACCTACGTCCTC 59.826 60.000 0.00 0.00 0.00 3.71
2640 4265 1.592400 TTCAGCCACCTACGTCCTCG 61.592 60.000 0.00 0.00 43.34 4.63
2641 4266 3.450115 AGCCACCTACGTCCTCGC 61.450 66.667 0.00 0.00 41.18 5.03
2642 4267 4.509737 GCCACCTACGTCCTCGCC 62.510 72.222 0.00 0.00 41.18 5.54
2643 4268 4.189188 CCACCTACGTCCTCGCCG 62.189 72.222 0.00 0.00 41.18 6.46
2644 4269 4.189188 CACCTACGTCCTCGCCGG 62.189 72.222 0.00 0.00 41.18 6.13
2674 4299 4.446413 GGTGCCCCGGTGACTACG 62.446 72.222 0.00 0.00 0.00 3.51
2675 4300 3.376078 GTGCCCCGGTGACTACGA 61.376 66.667 0.00 0.00 0.00 3.43
2676 4301 2.363276 TGCCCCGGTGACTACGAT 60.363 61.111 0.00 0.00 0.00 3.73
2677 4302 1.076850 TGCCCCGGTGACTACGATA 60.077 57.895 0.00 0.00 0.00 2.92
2678 4303 1.361632 GCCCCGGTGACTACGATAC 59.638 63.158 0.00 0.00 0.00 2.24
2679 4304 1.386525 GCCCCGGTGACTACGATACA 61.387 60.000 0.00 0.00 0.00 2.29
2680 4305 1.105457 CCCCGGTGACTACGATACAA 58.895 55.000 0.00 0.00 0.00 2.41
2681 4306 1.684983 CCCCGGTGACTACGATACAAT 59.315 52.381 0.00 0.00 0.00 2.71
2682 4307 2.545113 CCCCGGTGACTACGATACAATG 60.545 54.545 0.00 0.00 0.00 2.82
2683 4308 2.545113 CCCGGTGACTACGATACAATGG 60.545 54.545 0.00 0.00 0.00 3.16
2684 4309 2.124903 CGGTGACTACGATACAATGGC 58.875 52.381 0.00 0.00 0.00 4.40
2685 4310 2.223735 CGGTGACTACGATACAATGGCT 60.224 50.000 0.00 0.00 0.00 4.75
2686 4311 3.737047 CGGTGACTACGATACAATGGCTT 60.737 47.826 0.00 0.00 0.00 4.35
2687 4312 3.802685 GGTGACTACGATACAATGGCTTC 59.197 47.826 0.00 0.00 0.00 3.86
2688 4313 4.441634 GGTGACTACGATACAATGGCTTCT 60.442 45.833 0.00 0.00 0.00 2.85
2689 4314 4.740695 GTGACTACGATACAATGGCTTCTC 59.259 45.833 0.00 0.00 0.00 2.87
2690 4315 4.202121 TGACTACGATACAATGGCTTCTCC 60.202 45.833 0.00 0.00 0.00 3.71
2691 4316 3.961408 ACTACGATACAATGGCTTCTCCT 59.039 43.478 0.00 0.00 35.26 3.69
2692 4317 3.185246 ACGATACAATGGCTTCTCCTG 57.815 47.619 0.00 0.00 35.26 3.86
2693 4318 2.766263 ACGATACAATGGCTTCTCCTGA 59.234 45.455 0.00 0.00 35.26 3.86
2694 4319 3.181471 ACGATACAATGGCTTCTCCTGAG 60.181 47.826 0.00 0.00 35.26 3.35
2695 4320 3.737850 GATACAATGGCTTCTCCTGAGG 58.262 50.000 0.00 0.00 35.26 3.86
2696 4321 1.661463 ACAATGGCTTCTCCTGAGGA 58.339 50.000 0.00 0.00 35.26 3.71
2697 4322 1.280421 ACAATGGCTTCTCCTGAGGAC 59.720 52.381 0.00 0.00 35.26 3.85
2698 4323 0.539051 AATGGCTTCTCCTGAGGACG 59.461 55.000 0.00 0.00 35.26 4.79
2699 4324 1.965754 ATGGCTTCTCCTGAGGACGC 61.966 60.000 0.00 0.17 35.26 5.19
2700 4325 2.185608 GCTTCTCCTGAGGACGCC 59.814 66.667 0.00 0.00 0.00 5.68
2701 4326 2.650116 GCTTCTCCTGAGGACGCCA 61.650 63.158 0.00 0.00 0.00 5.69
2702 4327 1.965754 GCTTCTCCTGAGGACGCCAT 61.966 60.000 0.00 0.00 0.00 4.40
2703 4328 0.103937 CTTCTCCTGAGGACGCCATC 59.896 60.000 0.00 0.00 0.00 3.51
2704 4329 0.324738 TTCTCCTGAGGACGCCATCT 60.325 55.000 0.00 0.00 0.00 2.90
2705 4330 0.753479 TCTCCTGAGGACGCCATCTC 60.753 60.000 0.00 0.00 0.00 2.75
2706 4331 1.000359 TCCTGAGGACGCCATCTCA 60.000 57.895 0.00 0.00 37.65 3.27
2707 4332 0.397675 TCCTGAGGACGCCATCTCAT 60.398 55.000 0.00 0.00 39.04 2.90
2708 4333 0.033228 CCTGAGGACGCCATCTCATC 59.967 60.000 0.00 0.00 39.04 2.92
2709 4334 0.033228 CTGAGGACGCCATCTCATCC 59.967 60.000 0.00 0.00 39.04 3.51
2710 4335 0.687427 TGAGGACGCCATCTCATCCA 60.687 55.000 0.00 0.00 35.37 3.41
2711 4336 0.249657 GAGGACGCCATCTCATCCAC 60.250 60.000 0.00 0.00 33.33 4.02
2712 4337 1.592669 GGACGCCATCTCATCCACG 60.593 63.158 0.00 0.00 0.00 4.94
2713 4338 1.437573 GACGCCATCTCATCCACGA 59.562 57.895 0.00 0.00 0.00 4.35
2714 4339 0.596083 GACGCCATCTCATCCACGAG 60.596 60.000 0.00 0.00 0.00 4.18
2715 4340 1.953138 CGCCATCTCATCCACGAGC 60.953 63.158 0.00 0.00 32.75 5.03
2716 4341 1.953138 GCCATCTCATCCACGAGCG 60.953 63.158 0.00 0.00 32.75 5.03
2717 4342 1.300465 CCATCTCATCCACGAGCGG 60.300 63.158 0.00 0.00 32.75 5.52
2718 4343 1.953138 CATCTCATCCACGAGCGGC 60.953 63.158 0.00 0.00 32.75 6.53
2743 4368 4.517815 CGGCGGCCGCTAAACCTA 62.518 66.667 45.23 0.00 41.17 3.08
2744 4369 2.125024 GGCGGCCGCTAAACCTAA 60.125 61.111 45.23 0.00 41.60 2.69
2745 4370 2.466982 GGCGGCCGCTAAACCTAAC 61.467 63.158 45.23 24.45 41.60 2.34
2746 4371 2.466982 GCGGCCGCTAAACCTAACC 61.467 63.158 41.71 9.25 38.26 2.85
2747 4372 1.219935 CGGCCGCTAAACCTAACCT 59.780 57.895 14.67 0.00 0.00 3.50
2748 4373 1.087771 CGGCCGCTAAACCTAACCTG 61.088 60.000 14.67 0.00 0.00 4.00
2749 4374 0.746923 GGCCGCTAAACCTAACCTGG 60.747 60.000 0.00 0.00 0.00 4.45
2750 4375 0.251073 GCCGCTAAACCTAACCTGGA 59.749 55.000 0.00 0.00 0.00 3.86
2751 4376 1.339342 GCCGCTAAACCTAACCTGGAA 60.339 52.381 0.00 0.00 0.00 3.53
2752 4377 2.629051 CCGCTAAACCTAACCTGGAAG 58.371 52.381 0.00 0.00 0.00 3.46
2753 4378 2.235402 CCGCTAAACCTAACCTGGAAGA 59.765 50.000 0.00 0.00 34.07 2.87
2754 4379 3.118371 CCGCTAAACCTAACCTGGAAGAT 60.118 47.826 0.00 0.00 34.07 2.40
2755 4380 4.514401 CGCTAAACCTAACCTGGAAGATT 58.486 43.478 0.00 0.00 34.07 2.40
2756 4381 4.941873 CGCTAAACCTAACCTGGAAGATTT 59.058 41.667 0.00 0.00 34.07 2.17
2757 4382 5.414765 CGCTAAACCTAACCTGGAAGATTTT 59.585 40.000 0.00 3.75 34.07 1.82
2758 4383 6.072119 CGCTAAACCTAACCTGGAAGATTTTT 60.072 38.462 0.00 1.57 34.07 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.099613 TGCGTTCATTTTGCACGTGT 59.900 45.000 18.38 0.00 39.13 4.49
3 4 1.383080 GTGATGCGTTCATTTTGCACG 59.617 47.619 0.00 0.00 42.11 5.34
73 74 4.457466 GACCCAAAGACAAAGTTCAGGTA 58.543 43.478 0.00 0.00 0.00 3.08
75 76 2.290641 CGACCCAAAGACAAAGTTCAGG 59.709 50.000 0.00 0.00 0.00 3.86
148 149 1.456287 GCCTTGGTGTCTCCCACTT 59.544 57.895 0.00 0.00 43.94 3.16
149 150 2.529744 GGCCTTGGTGTCTCCCACT 61.530 63.158 0.00 0.00 43.94 4.00
150 151 2.034221 GGCCTTGGTGTCTCCCAC 59.966 66.667 0.00 0.00 43.74 4.61
151 152 3.636231 CGGCCTTGGTGTCTCCCA 61.636 66.667 0.00 0.00 34.77 4.37
153 154 4.021925 AGCGGCCTTGGTGTCTCC 62.022 66.667 0.00 0.00 0.00 3.71
172 173 3.948719 TTGCTTCTTCCCCGGCGT 61.949 61.111 6.01 0.00 0.00 5.68
195 196 3.257624 CCCACCACCCTAACGATAGATAC 59.742 52.174 0.56 0.00 41.38 2.24
300 302 1.831736 CCTGTCCATCCGTCTAAACCT 59.168 52.381 0.00 0.00 0.00 3.50
309 311 1.447838 CGTTGTCCCTGTCCATCCG 60.448 63.158 0.00 0.00 0.00 4.18
318 320 0.396811 CTGGTCTTTCCGTTGTCCCT 59.603 55.000 0.00 0.00 39.52 4.20
325 327 2.030562 CACCGCTGGTCTTTCCGT 59.969 61.111 0.00 0.00 39.52 4.69
347 349 2.211279 AGCCCTCCCCTCAACCTT 59.789 61.111 0.00 0.00 0.00 3.50
413 415 2.654877 CACTGACCTAACCGCCGT 59.345 61.111 0.00 0.00 0.00 5.68
592 596 3.846588 AGGAGGAAAGATCAAAGCTGGTA 59.153 43.478 0.00 0.00 0.00 3.25
593 597 2.646798 AGGAGGAAAGATCAAAGCTGGT 59.353 45.455 0.00 0.00 0.00 4.00
594 598 3.277715 GAGGAGGAAAGATCAAAGCTGG 58.722 50.000 0.00 0.00 0.00 4.85
633 641 0.260230 TAGGGTCTGAGCTGGAGGAG 59.740 60.000 6.83 0.00 0.00 3.69
634 642 0.710588 TTAGGGTCTGAGCTGGAGGA 59.289 55.000 6.83 0.00 0.00 3.71
635 643 0.827368 GTTAGGGTCTGAGCTGGAGG 59.173 60.000 6.83 0.00 0.00 4.30
638 646 1.270907 ACAGTTAGGGTCTGAGCTGG 58.729 55.000 6.83 0.00 36.81 4.85
641 649 1.623811 TCCAACAGTTAGGGTCTGAGC 59.376 52.381 0.00 0.00 36.81 4.26
642 650 4.442192 GCTATCCAACAGTTAGGGTCTGAG 60.442 50.000 0.00 0.00 36.81 3.35
643 651 3.451178 GCTATCCAACAGTTAGGGTCTGA 59.549 47.826 0.00 0.00 36.81 3.27
644 652 3.197766 TGCTATCCAACAGTTAGGGTCTG 59.802 47.826 0.00 0.00 38.68 3.51
645 653 3.450904 TGCTATCCAACAGTTAGGGTCT 58.549 45.455 0.00 0.00 0.00 3.85
646 654 3.906720 TGCTATCCAACAGTTAGGGTC 57.093 47.619 0.00 0.00 0.00 4.46
647 655 3.780294 TCATGCTATCCAACAGTTAGGGT 59.220 43.478 0.00 0.00 0.00 4.34
648 656 4.130118 GTCATGCTATCCAACAGTTAGGG 58.870 47.826 0.00 0.00 0.00 3.53
649 657 4.572389 GTGTCATGCTATCCAACAGTTAGG 59.428 45.833 0.00 0.00 0.00 2.69
650 658 5.178061 TGTGTCATGCTATCCAACAGTTAG 58.822 41.667 0.00 0.00 0.00 2.34
651 659 5.159273 TGTGTCATGCTATCCAACAGTTA 57.841 39.130 0.00 0.00 0.00 2.24
652 660 4.019792 TGTGTCATGCTATCCAACAGTT 57.980 40.909 0.00 0.00 0.00 3.16
653 661 3.701205 TGTGTCATGCTATCCAACAGT 57.299 42.857 0.00 0.00 0.00 3.55
654 662 5.337554 CATTTGTGTCATGCTATCCAACAG 58.662 41.667 0.00 0.00 0.00 3.16
655 663 4.158209 CCATTTGTGTCATGCTATCCAACA 59.842 41.667 0.00 0.00 0.00 3.33
656 664 4.158394 ACCATTTGTGTCATGCTATCCAAC 59.842 41.667 0.00 0.00 0.00 3.77
657 665 4.343231 ACCATTTGTGTCATGCTATCCAA 58.657 39.130 0.00 0.00 0.00 3.53
658 666 3.966979 ACCATTTGTGTCATGCTATCCA 58.033 40.909 0.00 0.00 0.00 3.41
659 667 5.048504 CCATACCATTTGTGTCATGCTATCC 60.049 44.000 0.00 0.00 0.00 2.59
660 668 5.532406 ACCATACCATTTGTGTCATGCTATC 59.468 40.000 0.00 0.00 0.00 2.08
661 669 5.300034 CACCATACCATTTGTGTCATGCTAT 59.700 40.000 0.00 0.00 0.00 2.97
662 670 4.639755 CACCATACCATTTGTGTCATGCTA 59.360 41.667 0.00 0.00 0.00 3.49
663 671 3.444742 CACCATACCATTTGTGTCATGCT 59.555 43.478 0.00 0.00 0.00 3.79
800 2208 6.032956 TCCGTAGACATGTGACAAAGTTAT 57.967 37.500 1.15 0.00 0.00 1.89
864 2278 1.525197 TGCAGCGCACGTATTTATAGC 59.475 47.619 11.47 0.00 31.71 2.97
931 2348 4.503370 GTGGTGCTAGCTATAGTTCGTTTC 59.497 45.833 17.23 0.00 0.00 2.78
967 2384 4.022935 TCAAGTGGCTGCTTAATTGACAAG 60.023 41.667 13.26 0.00 0.00 3.16
1091 2508 2.507992 CGCAGAAGTCCTGGAGCG 60.508 66.667 11.98 11.98 43.13 5.03
1131 2548 1.831736 AGATAGCACAACTTACGGCCT 59.168 47.619 0.00 0.00 0.00 5.19
1746 3201 1.970640 ACTTTGGCAGGAATTTGGACC 59.029 47.619 0.00 0.00 0.00 4.46
1753 3208 2.171003 GCTGGTTACTTTGGCAGGAAT 58.829 47.619 0.00 0.00 0.00 3.01
1758 3213 0.602562 GCATGCTGGTTACTTTGGCA 59.397 50.000 11.37 0.00 37.32 4.92
1788 3250 1.181098 AGCTGACCCAACCAACATGC 61.181 55.000 0.00 0.00 0.00 4.06
1789 3251 0.599558 CAGCTGACCCAACCAACATG 59.400 55.000 8.42 0.00 0.00 3.21
1790 3252 0.185901 ACAGCTGACCCAACCAACAT 59.814 50.000 23.35 0.00 0.00 2.71
1791 3253 0.840617 TACAGCTGACCCAACCAACA 59.159 50.000 23.35 0.00 0.00 3.33
1816 3279 6.649557 GGTCCTTTATTATTAGCAGCACGTAT 59.350 38.462 0.00 0.00 0.00 3.06
1894 3362 9.288576 TGAACTGACACAAAAGAATCAGAATAT 57.711 29.630 7.08 0.00 40.92 1.28
1919 3395 2.125912 CGACGAGGCCCTTCACTG 60.126 66.667 0.00 0.00 0.00 3.66
2200 3825 7.360946 GGAGTACAACTAACAAAAATGAGCGAT 60.361 37.037 0.00 0.00 0.00 4.58
2202 3827 6.077838 GGAGTACAACTAACAAAAATGAGCG 58.922 40.000 0.00 0.00 0.00 5.03
2212 3837 2.880443 ACGGAGGGAGTACAACTAACA 58.120 47.619 0.00 0.00 0.00 2.41
2223 3848 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2224 3849 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2225 3850 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2226 3851 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2227 3852 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2228 3853 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2229 3854 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2230 3855 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2231 3856 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2232 3857 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2233 3858 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2234 3859 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2235 3860 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2236 3861 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2237 3862 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2238 3863 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2239 3864 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2240 3865 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2241 3866 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2242 3867 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2243 3868 5.542616 TTTTTGAACTAAAACCACGACGA 57.457 34.783 0.00 0.00 37.96 4.20
2262 3887 4.575645 TCCAAATTACTCGTCGTGGTTTTT 59.424 37.500 0.00 0.00 0.00 1.94
2263 3888 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2264 3889 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2265 3890 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2266 3891 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2267 3892 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2268 3893 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2269 3894 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2270 3895 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2271 3896 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2272 3897 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2273 3898 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2274 3899 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2275 3900 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2276 3901 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2277 3902 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
2278 3903 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
2279 3904 4.720273 ACTAATACTCCCTCCGTTCCAAAT 59.280 41.667 0.00 0.00 0.00 2.32
2280 3905 4.098894 ACTAATACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
2281 3906 3.716431 ACTAATACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
2282 3907 3.393426 ACTAATACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
2283 3908 4.750021 AAACTAATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
2306 3931 9.490379 GGAGAGAGTACAATTTTAACTTCTGAA 57.510 33.333 0.00 0.00 0.00 3.02
2307 3932 7.813148 CGGAGAGAGTACAATTTTAACTTCTGA 59.187 37.037 0.00 0.00 0.00 3.27
2308 3933 7.599245 ACGGAGAGAGTACAATTTTAACTTCTG 59.401 37.037 0.00 0.00 0.00 3.02
2309 3934 7.668492 ACGGAGAGAGTACAATTTTAACTTCT 58.332 34.615 0.00 0.00 0.00 2.85
2310 3935 7.886405 ACGGAGAGAGTACAATTTTAACTTC 57.114 36.000 0.00 0.00 0.00 3.01
2311 3936 8.672823 AAACGGAGAGAGTACAATTTTAACTT 57.327 30.769 0.00 0.00 0.00 2.66
2312 3937 8.148999 AGAAACGGAGAGAGTACAATTTTAACT 58.851 33.333 0.00 0.00 0.00 2.24
2313 3938 8.307921 AGAAACGGAGAGAGTACAATTTTAAC 57.692 34.615 0.00 0.00 0.00 2.01
2314 3939 8.897872 AAGAAACGGAGAGAGTACAATTTTAA 57.102 30.769 0.00 0.00 0.00 1.52
2315 3940 8.897872 AAAGAAACGGAGAGAGTACAATTTTA 57.102 30.769 0.00 0.00 0.00 1.52
2316 3941 7.803279 AAAGAAACGGAGAGAGTACAATTTT 57.197 32.000 0.00 0.00 0.00 1.82
2317 3942 7.803279 AAAAGAAACGGAGAGAGTACAATTT 57.197 32.000 0.00 0.00 0.00 1.82
2318 3943 7.803279 AAAAAGAAACGGAGAGAGTACAATT 57.197 32.000 0.00 0.00 0.00 2.32
2319 3944 8.148999 ACTAAAAAGAAACGGAGAGAGTACAAT 58.851 33.333 0.00 0.00 0.00 2.71
2320 3945 7.495055 ACTAAAAAGAAACGGAGAGAGTACAA 58.505 34.615 0.00 0.00 0.00 2.41
2321 3946 7.014038 AGACTAAAAAGAAACGGAGAGAGTACA 59.986 37.037 0.00 0.00 0.00 2.90
2322 3947 7.326547 CAGACTAAAAAGAAACGGAGAGAGTAC 59.673 40.741 0.00 0.00 0.00 2.73
2323 3948 7.368833 CAGACTAAAAAGAAACGGAGAGAGTA 58.631 38.462 0.00 0.00 0.00 2.59
2324 3949 6.217294 CAGACTAAAAAGAAACGGAGAGAGT 58.783 40.000 0.00 0.00 0.00 3.24
2325 3950 5.119434 GCAGACTAAAAAGAAACGGAGAGAG 59.881 44.000 0.00 0.00 0.00 3.20
2326 3951 4.989168 GCAGACTAAAAAGAAACGGAGAGA 59.011 41.667 0.00 0.00 0.00 3.10
2327 3952 4.750098 TGCAGACTAAAAAGAAACGGAGAG 59.250 41.667 0.00 0.00 0.00 3.20
2328 3953 4.699637 TGCAGACTAAAAAGAAACGGAGA 58.300 39.130 0.00 0.00 0.00 3.71
2329 3954 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
2330 3955 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
2331 3956 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
2343 3968 9.624373 ACTTTGATCAAATCTTATATGCAGACT 57.376 29.630 20.76 0.00 0.00 3.24
2344 3969 9.875675 GACTTTGATCAAATCTTATATGCAGAC 57.124 33.333 20.76 2.27 0.00 3.51
2345 3970 9.617523 TGACTTTGATCAAATCTTATATGCAGA 57.382 29.630 20.76 0.00 0.00 4.26
2529 4154 9.581099 GAAAACGGTAAACCATATGAAATCAAT 57.419 29.630 3.65 0.00 35.14 2.57
2530 4155 8.030106 GGAAAACGGTAAACCATATGAAATCAA 58.970 33.333 3.65 0.00 35.14 2.57
2531 4156 7.363094 GGGAAAACGGTAAACCATATGAAATCA 60.363 37.037 3.65 0.00 35.14 2.57
2532 4157 6.976349 GGGAAAACGGTAAACCATATGAAATC 59.024 38.462 3.65 0.00 35.14 2.17
2533 4158 6.127281 GGGGAAAACGGTAAACCATATGAAAT 60.127 38.462 3.65 0.00 35.14 2.17
2534 4159 5.185442 GGGGAAAACGGTAAACCATATGAAA 59.815 40.000 3.65 0.00 35.14 2.69
2535 4160 4.705991 GGGGAAAACGGTAAACCATATGAA 59.294 41.667 3.65 0.00 35.14 2.57
2536 4161 4.271661 GGGGAAAACGGTAAACCATATGA 58.728 43.478 3.65 0.00 35.14 2.15
2537 4162 3.382227 GGGGGAAAACGGTAAACCATATG 59.618 47.826 0.00 0.00 35.14 1.78
2538 4163 3.270169 AGGGGGAAAACGGTAAACCATAT 59.730 43.478 0.00 0.00 35.14 1.78
2539 4164 2.648808 AGGGGGAAAACGGTAAACCATA 59.351 45.455 0.00 0.00 35.14 2.74
2540 4165 1.430075 AGGGGGAAAACGGTAAACCAT 59.570 47.619 0.00 0.00 35.14 3.55
2541 4166 0.852155 AGGGGGAAAACGGTAAACCA 59.148 50.000 0.00 0.00 35.14 3.67
2542 4167 2.877097 TAGGGGGAAAACGGTAAACC 57.123 50.000 0.00 0.00 0.00 3.27
2543 4168 2.489329 GCTTAGGGGGAAAACGGTAAAC 59.511 50.000 0.00 0.00 0.00 2.01
2544 4169 2.376181 AGCTTAGGGGGAAAACGGTAAA 59.624 45.455 0.00 0.00 0.00 2.01
2545 4170 1.987368 AGCTTAGGGGGAAAACGGTAA 59.013 47.619 0.00 0.00 0.00 2.85
2546 4171 1.556451 GAGCTTAGGGGGAAAACGGTA 59.444 52.381 0.00 0.00 0.00 4.02
2547 4172 0.327259 GAGCTTAGGGGGAAAACGGT 59.673 55.000 0.00 0.00 0.00 4.83
2548 4173 0.618981 AGAGCTTAGGGGGAAAACGG 59.381 55.000 0.00 0.00 0.00 4.44
2549 4174 1.739371 CGAGAGCTTAGGGGGAAAACG 60.739 57.143 0.00 0.00 0.00 3.60
2550 4175 2.025589 CGAGAGCTTAGGGGGAAAAC 57.974 55.000 0.00 0.00 0.00 2.43
2564 4189 0.458669 TAAAACCCTAGCCGCGAGAG 59.541 55.000 8.23 0.53 0.00 3.20
2565 4190 0.174162 GTAAAACCCTAGCCGCGAGA 59.826 55.000 8.23 0.00 0.00 4.04
2566 4191 0.175073 AGTAAAACCCTAGCCGCGAG 59.825 55.000 8.23 0.00 0.00 5.03
2567 4192 0.174162 GAGTAAAACCCTAGCCGCGA 59.826 55.000 8.23 0.00 0.00 5.87
2568 4193 0.808847 GGAGTAAAACCCTAGCCGCG 60.809 60.000 0.00 0.00 0.00 6.46
2569 4194 0.540454 AGGAGTAAAACCCTAGCCGC 59.460 55.000 0.00 0.00 0.00 6.53
2570 4195 1.202382 CGAGGAGTAAAACCCTAGCCG 60.202 57.143 0.00 0.00 31.84 5.52
2571 4196 1.138464 CCGAGGAGTAAAACCCTAGCC 59.862 57.143 0.00 0.00 31.84 3.93
2572 4197 1.472904 GCCGAGGAGTAAAACCCTAGC 60.473 57.143 0.00 0.00 31.84 3.42
2573 4198 1.202382 CGCCGAGGAGTAAAACCCTAG 60.202 57.143 0.00 0.00 31.84 3.02
2574 4199 0.819582 CGCCGAGGAGTAAAACCCTA 59.180 55.000 0.00 0.00 31.84 3.53
2575 4200 1.595357 CGCCGAGGAGTAAAACCCT 59.405 57.895 0.00 0.00 35.02 4.34
2576 4201 1.449070 CCGCCGAGGAGTAAAACCC 60.449 63.158 0.00 0.00 45.00 4.11
2577 4202 2.104859 GCCGCCGAGGAGTAAAACC 61.105 63.158 0.91 0.00 45.00 3.27
2578 4203 2.450345 CGCCGCCGAGGAGTAAAAC 61.450 63.158 0.91 0.00 45.00 2.43
2579 4204 2.125832 CGCCGCCGAGGAGTAAAA 60.126 61.111 0.91 0.00 45.00 1.52
2580 4205 3.063704 TCGCCGCCGAGGAGTAAA 61.064 61.111 0.91 0.00 45.00 2.01
2596 4221 3.140225 GACTCGGGGCGACTGGATC 62.140 68.421 0.00 0.00 0.00 3.36
2597 4222 3.148279 GACTCGGGGCGACTGGAT 61.148 66.667 0.00 0.00 0.00 3.41
2598 4223 3.881019 AAGACTCGGGGCGACTGGA 62.881 63.158 0.00 0.00 0.00 3.86
2599 4224 3.358076 GAAGACTCGGGGCGACTGG 62.358 68.421 0.00 0.00 0.00 4.00
2600 4225 2.182030 GAAGACTCGGGGCGACTG 59.818 66.667 0.00 0.00 0.00 3.51
2601 4226 3.069318 GGAAGACTCGGGGCGACT 61.069 66.667 0.00 0.00 0.00 4.18
2602 4227 3.379445 TGGAAGACTCGGGGCGAC 61.379 66.667 0.00 0.00 0.00 5.19
2603 4228 3.379445 GTGGAAGACTCGGGGCGA 61.379 66.667 0.00 0.00 0.00 5.54
2604 4229 2.837371 GAAGTGGAAGACTCGGGGCG 62.837 65.000 0.00 0.00 31.73 6.13
2605 4230 1.079057 GAAGTGGAAGACTCGGGGC 60.079 63.158 0.00 0.00 31.73 5.80
2606 4231 0.247736 CTGAAGTGGAAGACTCGGGG 59.752 60.000 0.00 0.00 31.73 5.73
2607 4232 0.390472 GCTGAAGTGGAAGACTCGGG 60.390 60.000 0.00 0.00 31.73 5.14
2608 4233 0.390472 GGCTGAAGTGGAAGACTCGG 60.390 60.000 0.00 0.00 31.73 4.63
2609 4234 0.318441 TGGCTGAAGTGGAAGACTCG 59.682 55.000 0.00 0.00 31.73 4.18
2610 4235 1.609320 GGTGGCTGAAGTGGAAGACTC 60.609 57.143 0.00 0.00 31.73 3.36
2611 4236 0.398318 GGTGGCTGAAGTGGAAGACT 59.602 55.000 0.00 0.00 35.94 3.24
2612 4237 0.398318 AGGTGGCTGAAGTGGAAGAC 59.602 55.000 0.00 0.00 0.00 3.01
2613 4238 1.623811 GTAGGTGGCTGAAGTGGAAGA 59.376 52.381 0.00 0.00 0.00 2.87
2614 4239 1.673033 CGTAGGTGGCTGAAGTGGAAG 60.673 57.143 0.00 0.00 0.00 3.46
2615 4240 0.320374 CGTAGGTGGCTGAAGTGGAA 59.680 55.000 0.00 0.00 0.00 3.53
2616 4241 0.830444 ACGTAGGTGGCTGAAGTGGA 60.830 55.000 0.00 0.00 0.00 4.02
2617 4242 0.389948 GACGTAGGTGGCTGAAGTGG 60.390 60.000 0.00 0.00 0.00 4.00
2618 4243 0.389948 GGACGTAGGTGGCTGAAGTG 60.390 60.000 0.00 0.00 0.00 3.16
2619 4244 0.542232 AGGACGTAGGTGGCTGAAGT 60.542 55.000 0.00 0.00 0.00 3.01
2620 4245 0.173708 GAGGACGTAGGTGGCTGAAG 59.826 60.000 0.00 0.00 0.00 3.02
2621 4246 1.592400 CGAGGACGTAGGTGGCTGAA 61.592 60.000 0.00 0.00 34.56 3.02
2622 4247 2.044555 CGAGGACGTAGGTGGCTGA 61.045 63.158 0.00 0.00 34.56 4.26
2623 4248 2.490217 CGAGGACGTAGGTGGCTG 59.510 66.667 0.00 0.00 34.56 4.85
2624 4249 3.450115 GCGAGGACGTAGGTGGCT 61.450 66.667 0.00 0.00 41.98 4.75
2625 4250 4.509737 GGCGAGGACGTAGGTGGC 62.510 72.222 0.00 0.00 41.98 5.01
2626 4251 4.189188 CGGCGAGGACGTAGGTGG 62.189 72.222 0.00 0.00 41.98 4.61
2627 4252 4.189188 CCGGCGAGGACGTAGGTG 62.189 72.222 9.30 0.00 45.00 4.00
2658 4283 1.386525 TATCGTAGTCACCGGGGCAC 61.387 60.000 6.32 1.70 0.00 5.01
2659 4284 1.076850 TATCGTAGTCACCGGGGCA 60.077 57.895 6.32 0.00 0.00 5.36
2660 4285 1.361632 GTATCGTAGTCACCGGGGC 59.638 63.158 6.32 0.00 0.00 5.80
2661 4286 1.105457 TTGTATCGTAGTCACCGGGG 58.895 55.000 6.32 0.00 0.00 5.73
2662 4287 2.545113 CCATTGTATCGTAGTCACCGGG 60.545 54.545 6.32 0.00 0.00 5.73
2663 4288 2.739292 CCATTGTATCGTAGTCACCGG 58.261 52.381 0.00 0.00 0.00 5.28
2664 4289 2.124903 GCCATTGTATCGTAGTCACCG 58.875 52.381 0.00 0.00 0.00 4.94
2665 4290 3.454371 AGCCATTGTATCGTAGTCACC 57.546 47.619 0.00 0.00 0.00 4.02
2666 4291 4.683832 AGAAGCCATTGTATCGTAGTCAC 58.316 43.478 0.00 0.00 0.00 3.67
2667 4292 4.202121 GGAGAAGCCATTGTATCGTAGTCA 60.202 45.833 0.00 0.00 36.34 3.41
2668 4293 4.038162 AGGAGAAGCCATTGTATCGTAGTC 59.962 45.833 0.00 0.00 40.02 2.59
2669 4294 3.961408 AGGAGAAGCCATTGTATCGTAGT 59.039 43.478 0.00 0.00 40.02 2.73
2670 4295 4.038042 TCAGGAGAAGCCATTGTATCGTAG 59.962 45.833 0.00 0.00 40.02 3.51
2671 4296 3.958147 TCAGGAGAAGCCATTGTATCGTA 59.042 43.478 0.00 0.00 40.02 3.43
2672 4297 2.766263 TCAGGAGAAGCCATTGTATCGT 59.234 45.455 0.00 0.00 40.02 3.73
2673 4298 3.388308 CTCAGGAGAAGCCATTGTATCG 58.612 50.000 0.00 0.00 40.02 2.92
2674 4299 3.389329 TCCTCAGGAGAAGCCATTGTATC 59.611 47.826 0.00 0.00 40.02 2.24
2675 4300 3.135530 GTCCTCAGGAGAAGCCATTGTAT 59.864 47.826 0.00 0.00 40.02 2.29
2676 4301 2.501723 GTCCTCAGGAGAAGCCATTGTA 59.498 50.000 0.00 0.00 40.02 2.41
2677 4302 1.280421 GTCCTCAGGAGAAGCCATTGT 59.720 52.381 0.00 0.00 40.02 2.71
2678 4303 1.741732 CGTCCTCAGGAGAAGCCATTG 60.742 57.143 0.00 0.00 40.02 2.82
2679 4304 0.539051 CGTCCTCAGGAGAAGCCATT 59.461 55.000 0.00 0.00 40.02 3.16
2680 4305 1.965754 GCGTCCTCAGGAGAAGCCAT 61.966 60.000 0.00 0.00 40.02 4.40
2681 4306 2.650116 GCGTCCTCAGGAGAAGCCA 61.650 63.158 0.00 0.00 40.02 4.75
2682 4307 2.185608 GCGTCCTCAGGAGAAGCC 59.814 66.667 0.00 0.00 29.39 4.35
2683 4308 1.965754 ATGGCGTCCTCAGGAGAAGC 61.966 60.000 0.00 0.00 29.39 3.86
2684 4309 0.103937 GATGGCGTCCTCAGGAGAAG 59.896 60.000 0.00 0.00 29.39 2.85
2685 4310 0.324738 AGATGGCGTCCTCAGGAGAA 60.325 55.000 0.00 0.00 29.39 2.87
2686 4311 0.753479 GAGATGGCGTCCTCAGGAGA 60.753 60.000 0.00 0.00 29.39 3.71
2687 4312 1.039785 TGAGATGGCGTCCTCAGGAG 61.040 60.000 0.00 0.00 34.78 3.69
2688 4313 0.397675 ATGAGATGGCGTCCTCAGGA 60.398 55.000 2.37 0.00 42.00 3.86
2689 4314 0.033228 GATGAGATGGCGTCCTCAGG 59.967 60.000 2.37 0.00 42.00 3.86
2690 4315 0.033228 GGATGAGATGGCGTCCTCAG 59.967 60.000 2.37 0.00 42.00 3.35
2691 4316 0.687427 TGGATGAGATGGCGTCCTCA 60.687 55.000 2.37 7.15 43.08 3.86
2692 4317 0.249657 GTGGATGAGATGGCGTCCTC 60.250 60.000 2.37 1.46 43.08 3.71
2693 4318 1.826024 GTGGATGAGATGGCGTCCT 59.174 57.895 2.37 0.00 43.08 3.85
2694 4319 1.592669 CGTGGATGAGATGGCGTCC 60.593 63.158 2.37 0.00 42.99 4.79
2695 4320 0.596083 CTCGTGGATGAGATGGCGTC 60.596 60.000 0.00 0.00 38.28 5.19
2696 4321 1.439228 CTCGTGGATGAGATGGCGT 59.561 57.895 0.00 0.00 38.28 5.68
2697 4322 1.953138 GCTCGTGGATGAGATGGCG 60.953 63.158 0.00 0.00 38.28 5.69
2698 4323 1.953138 CGCTCGTGGATGAGATGGC 60.953 63.158 0.00 0.00 38.28 4.40
2699 4324 1.300465 CCGCTCGTGGATGAGATGG 60.300 63.158 0.00 0.00 38.28 3.51
2700 4325 1.953138 GCCGCTCGTGGATGAGATG 60.953 63.158 0.00 0.00 38.28 2.90
2701 4326 2.419198 GCCGCTCGTGGATGAGAT 59.581 61.111 0.00 0.00 38.28 2.75
2702 4327 4.193334 CGCCGCTCGTGGATGAGA 62.193 66.667 0.00 0.00 38.28 3.27
2727 4352 2.125024 TTAGGTTTAGCGGCCGCC 60.125 61.111 44.47 29.38 43.17 6.13
2728 4353 2.466982 GGTTAGGTTTAGCGGCCGC 61.467 63.158 42.34 42.34 42.33 6.53
2729 4354 1.087771 CAGGTTAGGTTTAGCGGCCG 61.088 60.000 24.05 24.05 0.00 6.13
2730 4355 0.746923 CCAGGTTAGGTTTAGCGGCC 60.747 60.000 0.00 0.00 0.00 6.13
2731 4356 0.251073 TCCAGGTTAGGTTTAGCGGC 59.749 55.000 0.00 0.00 0.00 6.53
2732 4357 2.235402 TCTTCCAGGTTAGGTTTAGCGG 59.765 50.000 0.00 0.00 0.00 5.52
2733 4358 3.604875 TCTTCCAGGTTAGGTTTAGCG 57.395 47.619 0.00 0.00 0.00 4.26
2734 4359 6.835819 AAAATCTTCCAGGTTAGGTTTAGC 57.164 37.500 3.84 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.