Multiple sequence alignment - TraesCS3A01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G038200 chr3A 100.000 3925 0 0 1 3925 20559703 20555779 0.000000e+00 7249.0
1 TraesCS3A01G038200 chr3A 79.982 1109 191 27 1837 2925 20547266 20546169 0.000000e+00 789.0
2 TraesCS3A01G038200 chr3D 94.268 2704 117 21 515 3184 15978088 15975389 0.000000e+00 4100.0
3 TraesCS3A01G038200 chr3D 87.793 598 46 12 3341 3925 15975397 15974814 0.000000e+00 675.0
4 TraesCS3A01G038200 chr3D 81.818 231 23 10 1 212 15978349 15978119 4.030000e-40 176.0
5 TraesCS3A01G038200 chr3B 92.692 2723 105 37 515 3168 22915339 22918036 0.000000e+00 3840.0
6 TraesCS3A01G038200 chr3B 97.619 294 6 1 217 510 133388044 133387752 1.630000e-138 503.0
7 TraesCS3A01G038200 chr3B 97.552 286 7 0 222 507 697132808 697133093 1.270000e-134 490.0
8 TraesCS3A01G038200 chr3B 90.361 83 4 2 140 222 22915236 22915314 5.360000e-19 106.0
9 TraesCS3A01G038200 chr5B 82.252 1048 162 21 1865 2897 617435883 617434845 0.000000e+00 883.0
10 TraesCS3A01G038200 chr5B 81.418 1044 169 18 1886 2912 617292486 617291451 0.000000e+00 830.0
11 TraesCS3A01G038200 chr5D 81.948 1047 165 21 1865 2896 498172941 498171904 0.000000e+00 865.0
12 TraesCS3A01G038200 chr5D 81.704 1033 168 16 1886 2904 498085437 498084412 0.000000e+00 841.0
13 TraesCS3A01G038200 chr5D 82.114 984 159 14 1886 2859 498290449 498289473 0.000000e+00 826.0
14 TraesCS3A01G038200 chr5A 81.740 1046 169 19 1865 2896 622393551 622392514 0.000000e+00 854.0
15 TraesCS3A01G038200 chr5A 81.007 1053 173 22 1886 2920 622233634 622232591 0.000000e+00 811.0
16 TraesCS3A01G038200 chr5A 97.586 290 7 0 221 510 523834457 523834168 7.570000e-137 497.0
17 TraesCS3A01G038200 chr5A 85.185 81 10 2 3447 3526 651991706 651991785 9.040000e-12 82.4
18 TraesCS3A01G038200 chrUn 97.561 287 7 0 221 507 50779630 50779916 3.520000e-135 492.0
19 TraesCS3A01G038200 chr7B 97.552 286 7 0 222 507 519786941 519787226 1.270000e-134 490.0
20 TraesCS3A01G038200 chr7B 76.437 174 20 13 3190 3342 623563577 623563750 1.510000e-09 75.0
21 TraesCS3A01G038200 chr1A 97.203 286 8 0 222 507 513746410 513746125 5.900000e-133 484.0
22 TraesCS3A01G038200 chr2B 96.564 291 10 0 221 511 67537557 67537267 2.120000e-132 483.0
23 TraesCS3A01G038200 chr2B 95.608 296 13 0 224 519 746273077 746272782 3.550000e-130 475.0
24 TraesCS3A01G038200 chr2B 83.562 73 11 1 3280 3351 472903437 472903365 2.530000e-07 67.6
25 TraesCS3A01G038200 chr7D 95.946 296 11 1 217 511 40665631 40665336 2.740000e-131 479.0
26 TraesCS3A01G038200 chr7D 91.379 58 5 0 3279 3336 80767003 80766946 3.250000e-11 80.5
27 TraesCS3A01G038200 chr2D 80.469 128 22 3 3212 3336 524967188 524967315 1.160000e-15 95.3
28 TraesCS3A01G038200 chr1B 86.076 79 8 3 3273 3349 675952222 675952299 9.040000e-12 82.4
29 TraesCS3A01G038200 chr6D 92.453 53 4 0 3289 3341 416962308 416962256 4.210000e-10 76.8
30 TraesCS3A01G038200 chr6D 90.741 54 5 0 3289 3342 14681938 14681991 5.440000e-09 73.1
31 TraesCS3A01G038200 chr4D 89.655 58 6 0 3285 3342 467118720 467118663 1.510000e-09 75.0
32 TraesCS3A01G038200 chr6A 92.157 51 4 0 3292 3342 532849253 532849203 5.440000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G038200 chr3A 20555779 20559703 3924 True 7249.000000 7249 100.000000 1 3925 1 chr3A.!!$R2 3924
1 TraesCS3A01G038200 chr3A 20546169 20547266 1097 True 789.000000 789 79.982000 1837 2925 1 chr3A.!!$R1 1088
2 TraesCS3A01G038200 chr3D 15974814 15978349 3535 True 1650.333333 4100 87.959667 1 3925 3 chr3D.!!$R1 3924
3 TraesCS3A01G038200 chr3B 22915236 22918036 2800 False 1973.000000 3840 91.526500 140 3168 2 chr3B.!!$F2 3028
4 TraesCS3A01G038200 chr5B 617434845 617435883 1038 True 883.000000 883 82.252000 1865 2897 1 chr5B.!!$R2 1032
5 TraesCS3A01G038200 chr5B 617291451 617292486 1035 True 830.000000 830 81.418000 1886 2912 1 chr5B.!!$R1 1026
6 TraesCS3A01G038200 chr5D 498171904 498172941 1037 True 865.000000 865 81.948000 1865 2896 1 chr5D.!!$R2 1031
7 TraesCS3A01G038200 chr5D 498084412 498085437 1025 True 841.000000 841 81.704000 1886 2904 1 chr5D.!!$R1 1018
8 TraesCS3A01G038200 chr5D 498289473 498290449 976 True 826.000000 826 82.114000 1886 2859 1 chr5D.!!$R3 973
9 TraesCS3A01G038200 chr5A 622392514 622393551 1037 True 854.000000 854 81.740000 1865 2896 1 chr5A.!!$R3 1031
10 TraesCS3A01G038200 chr5A 622232591 622233634 1043 True 811.000000 811 81.007000 1886 2920 1 chr5A.!!$R2 1034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 342 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.0 0.00 0.00 0.00 6.13 F
333 353 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.0 3.17 3.17 39.71 3.02 F
342 362 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.0 11.78 11.78 42.06 4.09 F
796 827 0.392461 GTGTGTGTGTGTGTGGAGGT 60.392 55.0 0.00 0.00 0.00 3.85 F
1616 1674 0.463204 CTCTCACATCGCCACCATCT 59.537 55.0 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1760 0.035439 GGTGCCAAGCTAGCTTACCA 60.035 55.000 30.46 25.21 34.20 3.25 R
1795 1889 0.795735 CTTCCGCACCTACGTACGTG 60.796 60.000 30.25 17.12 0.00 4.49 R
2192 2287 1.376553 GGTGAGGAGGCTTGTCAGC 60.377 63.158 11.84 11.84 46.52 4.26 R
2195 2290 2.266055 CGGGTGAGGAGGCTTGTC 59.734 66.667 0.00 0.00 0.00 3.18 R
3429 3553 0.392336 TGCAGCCCCAACAAACATTC 59.608 50.000 0.00 0.00 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.174166 GTTGTTCTCCTCTTTTAATAATGCCTA 57.826 33.333 0.00 0.00 0.00 3.93
33 34 9.920946 TTGTTCTCCTCTTTTAATAATGCCTAT 57.079 29.630 0.00 0.00 0.00 2.57
57 59 1.550072 CCGACCCTTGGCAATTTGATT 59.450 47.619 0.00 0.00 0.00 2.57
78 80 1.902918 AGGCAAATGGCGCTTGACA 60.903 52.632 15.25 1.37 46.16 3.58
87 89 2.249309 CGCTTGACAGTGCGTTGG 59.751 61.111 14.18 0.00 46.09 3.77
88 90 2.534019 CGCTTGACAGTGCGTTGGT 61.534 57.895 14.18 0.00 46.09 3.67
96 98 2.610374 GACAGTGCGTTGGTTTACTGAA 59.390 45.455 9.89 0.00 42.28 3.02
97 99 2.612212 ACAGTGCGTTGGTTTACTGAAG 59.388 45.455 9.89 0.00 42.28 3.02
106 108 4.223556 TGGTTTACTGAAGTTGGTGTCA 57.776 40.909 0.00 0.00 0.00 3.58
107 109 4.787551 TGGTTTACTGAAGTTGGTGTCAT 58.212 39.130 0.00 0.00 0.00 3.06
108 110 4.578516 TGGTTTACTGAAGTTGGTGTCATG 59.421 41.667 0.00 0.00 0.00 3.07
111 113 6.261381 GGTTTACTGAAGTTGGTGTCATGTTA 59.739 38.462 0.00 0.00 0.00 2.41
112 114 7.352739 GTTTACTGAAGTTGGTGTCATGTTAG 58.647 38.462 0.00 0.00 0.00 2.34
113 115 5.036117 ACTGAAGTTGGTGTCATGTTAGT 57.964 39.130 0.00 0.00 0.00 2.24
114 116 4.816385 ACTGAAGTTGGTGTCATGTTAGTG 59.184 41.667 0.00 0.00 0.00 2.74
115 117 4.776349 TGAAGTTGGTGTCATGTTAGTGT 58.224 39.130 0.00 0.00 0.00 3.55
116 118 4.814234 TGAAGTTGGTGTCATGTTAGTGTC 59.186 41.667 0.00 0.00 0.00 3.67
117 119 3.390135 AGTTGGTGTCATGTTAGTGTCG 58.610 45.455 0.00 0.00 0.00 4.35
118 120 2.448926 TGGTGTCATGTTAGTGTCGG 57.551 50.000 0.00 0.00 0.00 4.79
119 121 1.689813 TGGTGTCATGTTAGTGTCGGT 59.310 47.619 0.00 0.00 0.00 4.69
120 122 2.103432 TGGTGTCATGTTAGTGTCGGTT 59.897 45.455 0.00 0.00 0.00 4.44
122 124 3.185797 GGTGTCATGTTAGTGTCGGTTTC 59.814 47.826 0.00 0.00 0.00 2.78
123 125 3.805422 GTGTCATGTTAGTGTCGGTTTCA 59.195 43.478 0.00 0.00 0.00 2.69
124 126 4.055360 TGTCATGTTAGTGTCGGTTTCAG 58.945 43.478 0.00 0.00 0.00 3.02
125 127 4.056050 GTCATGTTAGTGTCGGTTTCAGT 58.944 43.478 0.00 0.00 0.00 3.41
126 128 4.510340 GTCATGTTAGTGTCGGTTTCAGTT 59.490 41.667 0.00 0.00 0.00 3.16
127 129 5.693104 GTCATGTTAGTGTCGGTTTCAGTTA 59.307 40.000 0.00 0.00 0.00 2.24
128 130 5.924254 TCATGTTAGTGTCGGTTTCAGTTAG 59.076 40.000 0.00 0.00 0.00 2.34
129 131 5.518848 TGTTAGTGTCGGTTTCAGTTAGA 57.481 39.130 0.00 0.00 0.00 2.10
130 132 6.092955 TGTTAGTGTCGGTTTCAGTTAGAT 57.907 37.500 0.00 0.00 0.00 1.98
131 133 6.154445 TGTTAGTGTCGGTTTCAGTTAGATC 58.846 40.000 0.00 0.00 0.00 2.75
132 134 4.866508 AGTGTCGGTTTCAGTTAGATCA 57.133 40.909 0.00 0.00 0.00 2.92
133 135 4.810790 AGTGTCGGTTTCAGTTAGATCAG 58.189 43.478 0.00 0.00 0.00 2.90
134 136 3.927142 GTGTCGGTTTCAGTTAGATCAGG 59.073 47.826 0.00 0.00 0.00 3.86
135 137 3.056107 TGTCGGTTTCAGTTAGATCAGGG 60.056 47.826 0.00 0.00 0.00 4.45
172 192 4.921470 ATTACGACGGAAAGTTGATGTG 57.079 40.909 0.00 0.00 37.67 3.21
209 229 1.094785 GGTCCAAACCGTGATGGATG 58.905 55.000 9.01 0.00 46.78 3.51
210 230 1.094785 GTCCAAACCGTGATGGATGG 58.905 55.000 12.16 12.16 46.78 3.51
211 231 1.339631 GTCCAAACCGTGATGGATGGA 60.340 52.381 15.61 15.61 46.78 3.41
212 232 1.563879 TCCAAACCGTGATGGATGGAT 59.436 47.619 15.61 0.00 45.79 3.41
222 242 2.366590 TGATGGATGGATCGACCTGAAG 59.633 50.000 0.00 0.00 39.86 3.02
223 243 2.159179 TGGATGGATCGACCTGAAGA 57.841 50.000 0.00 0.00 39.86 2.87
224 244 2.034878 TGGATGGATCGACCTGAAGAG 58.965 52.381 0.00 0.00 39.86 2.85
225 245 1.270041 GGATGGATCGACCTGAAGAGC 60.270 57.143 0.00 0.00 39.86 4.09
226 246 1.410517 GATGGATCGACCTGAAGAGCA 59.589 52.381 0.00 0.00 39.86 4.26
227 247 1.266178 TGGATCGACCTGAAGAGCAA 58.734 50.000 0.00 0.00 39.86 3.91
228 248 1.205655 TGGATCGACCTGAAGAGCAAG 59.794 52.381 0.00 0.00 39.86 4.01
230 250 2.427453 GGATCGACCTGAAGAGCAAGTA 59.573 50.000 0.00 0.00 35.41 2.24
232 252 4.278669 GGATCGACCTGAAGAGCAAGTATA 59.721 45.833 0.00 0.00 35.41 1.47
233 253 5.221263 GGATCGACCTGAAGAGCAAGTATAA 60.221 44.000 0.00 0.00 35.41 0.98
235 255 6.954487 TCGACCTGAAGAGCAAGTATAATA 57.046 37.500 0.00 0.00 0.00 0.98
237 257 6.771267 TCGACCTGAAGAGCAAGTATAATAGA 59.229 38.462 0.00 0.00 0.00 1.98
239 259 7.041030 CGACCTGAAGAGCAAGTATAATAGAGA 60.041 40.741 0.00 0.00 0.00 3.10
240 260 8.719645 ACCTGAAGAGCAAGTATAATAGAGAT 57.280 34.615 0.00 0.00 0.00 2.75
241 261 8.584157 ACCTGAAGAGCAAGTATAATAGAGATG 58.416 37.037 0.00 0.00 0.00 2.90
242 262 8.801299 CCTGAAGAGCAAGTATAATAGAGATGA 58.199 37.037 0.00 0.00 0.00 2.92
243 263 9.844790 CTGAAGAGCAAGTATAATAGAGATGAG 57.155 37.037 0.00 0.00 0.00 2.90
244 264 9.360901 TGAAGAGCAAGTATAATAGAGATGAGT 57.639 33.333 0.00 0.00 0.00 3.41
245 265 9.840427 GAAGAGCAAGTATAATAGAGATGAGTC 57.160 37.037 0.00 0.00 0.00 3.36
246 266 8.932434 AGAGCAAGTATAATAGAGATGAGTCA 57.068 34.615 0.00 0.00 0.00 3.41
247 267 9.013229 AGAGCAAGTATAATAGAGATGAGTCAG 57.987 37.037 0.00 0.00 0.00 3.51
248 268 7.601856 AGCAAGTATAATAGAGATGAGTCAGC 58.398 38.462 0.00 0.00 0.00 4.26
249 269 7.232330 AGCAAGTATAATAGAGATGAGTCAGCA 59.768 37.037 11.60 0.00 0.00 4.41
250 270 7.541783 GCAAGTATAATAGAGATGAGTCAGCAG 59.458 40.741 11.60 0.00 0.00 4.24
251 271 7.701539 AGTATAATAGAGATGAGTCAGCAGG 57.298 40.000 11.60 0.00 0.00 4.85
252 272 3.749665 AATAGAGATGAGTCAGCAGGC 57.250 47.619 11.60 0.00 0.00 4.85
253 273 2.450867 TAGAGATGAGTCAGCAGGCT 57.549 50.000 11.60 7.34 0.00 4.58
254 274 2.450867 AGAGATGAGTCAGCAGGCTA 57.549 50.000 11.60 0.00 0.00 3.93
255 275 2.961510 AGAGATGAGTCAGCAGGCTAT 58.038 47.619 11.60 0.00 0.00 2.97
256 276 4.111255 AGAGATGAGTCAGCAGGCTATA 57.889 45.455 11.60 0.00 0.00 1.31
257 277 4.676109 AGAGATGAGTCAGCAGGCTATAT 58.324 43.478 11.60 0.00 0.00 0.86
258 278 4.463539 AGAGATGAGTCAGCAGGCTATATG 59.536 45.833 11.60 0.00 0.00 1.78
259 279 4.414677 AGATGAGTCAGCAGGCTATATGA 58.585 43.478 11.60 0.00 0.00 2.15
260 280 4.837298 AGATGAGTCAGCAGGCTATATGAA 59.163 41.667 11.60 0.00 0.00 2.57
261 281 5.306419 AGATGAGTCAGCAGGCTATATGAAA 59.694 40.000 11.60 0.00 0.00 2.69
262 282 5.557576 TGAGTCAGCAGGCTATATGAAAT 57.442 39.130 0.00 0.00 0.00 2.17
263 283 6.670695 TGAGTCAGCAGGCTATATGAAATA 57.329 37.500 0.00 0.00 0.00 1.40
264 284 7.066307 TGAGTCAGCAGGCTATATGAAATAA 57.934 36.000 0.00 0.00 29.06 1.40
265 285 7.508687 TGAGTCAGCAGGCTATATGAAATAAA 58.491 34.615 0.00 0.00 29.06 1.40
266 286 7.442364 TGAGTCAGCAGGCTATATGAAATAAAC 59.558 37.037 0.00 0.00 29.06 2.01
267 287 7.512992 AGTCAGCAGGCTATATGAAATAAACT 58.487 34.615 0.00 0.00 29.06 2.66
268 288 8.651389 AGTCAGCAGGCTATATGAAATAAACTA 58.349 33.333 0.00 0.00 29.06 2.24
269 289 8.930760 GTCAGCAGGCTATATGAAATAAACTAG 58.069 37.037 0.00 0.00 29.06 2.57
270 290 8.651389 TCAGCAGGCTATATGAAATAAACTAGT 58.349 33.333 0.00 0.00 29.06 2.57
271 291 9.929180 CAGCAGGCTATATGAAATAAACTAGTA 57.071 33.333 0.00 0.00 29.06 1.82
291 311 9.614792 ACTAGTATATTTTTGCTTAGTTGGAGG 57.385 33.333 0.00 0.00 0.00 4.30
292 312 9.832445 CTAGTATATTTTTGCTTAGTTGGAGGA 57.168 33.333 0.00 0.00 0.00 3.71
294 314 9.528489 AGTATATTTTTGCTTAGTTGGAGGAAA 57.472 29.630 0.00 0.00 33.47 3.13
295 315 9.788960 GTATATTTTTGCTTAGTTGGAGGAAAG 57.211 33.333 0.00 0.00 36.14 2.62
296 316 6.976934 ATTTTTGCTTAGTTGGAGGAAAGA 57.023 33.333 0.00 0.00 36.14 2.52
297 317 6.391227 TTTTTGCTTAGTTGGAGGAAAGAG 57.609 37.500 0.00 0.00 36.14 2.85
298 318 4.974645 TTGCTTAGTTGGAGGAAAGAGA 57.025 40.909 0.00 0.00 0.00 3.10
299 319 4.974645 TGCTTAGTTGGAGGAAAGAGAA 57.025 40.909 0.00 0.00 0.00 2.87
300 320 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
301 321 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
302 322 5.175127 GCTTAGTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 0.00 2.85
303 323 5.729510 CTTAGTTGGAGGAAAGAGAAGAGG 58.270 45.833 0.00 0.00 0.00 3.69
304 324 3.863086 AGTTGGAGGAAAGAGAAGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
305 325 3.837731 AGTTGGAGGAAAGAGAAGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
306 326 3.835395 GTTGGAGGAAAGAGAAGAGGAGA 59.165 47.826 0.00 0.00 0.00 3.71
307 327 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
308 328 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
309 329 3.954258 GGAGGAAAGAGAAGAGGAGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
310 330 4.325030 GGAGGAAAGAGAAGAGGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
311 331 5.261216 GAGGAAAGAGAAGAGGAGAGAGAA 58.739 45.833 0.00 0.00 0.00 2.87
312 332 5.264395 AGGAAAGAGAAGAGGAGAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
313 333 4.402474 GGAAAGAGAAGAGGAGAGAGAAGG 59.598 50.000 0.00 0.00 0.00 3.46
314 334 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
315 335 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
316 336 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
317 337 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
318 338 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
319 339 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
320 340 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
321 341 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
322 342 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
323 343 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
324 344 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
325 345 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
326 346 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
327 347 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
328 348 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
329 349 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
330 350 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
331 351 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
332 352 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
333 353 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
334 354 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
340 360 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
341 361 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
342 362 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
350 370 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
351 371 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
352 372 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
368 388 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
369 389 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
370 390 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
371 391 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
372 392 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
373 393 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
374 394 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
375 395 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
376 396 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
377 397 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
378 398 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
379 399 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
380 400 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
381 401 4.293415 GCACTTTGTGAGAATGAAAGGTG 58.707 43.478 1.52 0.00 35.23 4.00
382 402 4.794003 GCACTTTGTGAGAATGAAAGGTGG 60.794 45.833 1.52 0.00 35.23 4.61
383 403 3.891366 ACTTTGTGAGAATGAAAGGTGGG 59.109 43.478 0.00 0.00 0.00 4.61
384 404 1.909700 TGTGAGAATGAAAGGTGGGC 58.090 50.000 0.00 0.00 0.00 5.36
385 405 1.177401 GTGAGAATGAAAGGTGGGCC 58.823 55.000 0.00 0.00 0.00 5.80
386 406 0.776810 TGAGAATGAAAGGTGGGCCA 59.223 50.000 0.00 0.00 37.19 5.36
387 407 1.177401 GAGAATGAAAGGTGGGCCAC 58.823 55.000 28.69 28.69 37.19 5.01
388 408 0.482446 AGAATGAAAGGTGGGCCACA 59.518 50.000 35.69 17.39 35.86 4.17
389 409 1.077663 AGAATGAAAGGTGGGCCACAT 59.922 47.619 35.69 28.70 35.86 3.21
390 410 2.311542 AGAATGAAAGGTGGGCCACATA 59.688 45.455 35.69 16.77 35.86 2.29
391 411 2.917713 ATGAAAGGTGGGCCACATAA 57.082 45.000 35.69 19.62 35.86 1.90
392 412 2.917713 TGAAAGGTGGGCCACATAAT 57.082 45.000 35.69 22.42 35.86 1.28
393 413 2.455557 TGAAAGGTGGGCCACATAATG 58.544 47.619 35.69 0.00 35.86 1.90
394 414 2.042297 TGAAAGGTGGGCCACATAATGA 59.958 45.455 35.69 14.94 35.86 2.57
395 415 2.917713 AAGGTGGGCCACATAATGAA 57.082 45.000 35.69 0.00 35.86 2.57
396 416 2.917713 AGGTGGGCCACATAATGAAA 57.082 45.000 35.69 0.00 35.86 2.69
397 417 3.182887 AGGTGGGCCACATAATGAAAA 57.817 42.857 35.69 0.00 35.86 2.29
398 418 3.515562 AGGTGGGCCACATAATGAAAAA 58.484 40.909 35.69 0.00 35.86 1.94
448 468 4.796110 ACATGTTGGCTATAAGATGGGT 57.204 40.909 0.00 0.00 36.09 4.51
449 469 5.129368 ACATGTTGGCTATAAGATGGGTT 57.871 39.130 0.00 0.00 36.09 4.11
450 470 4.889409 ACATGTTGGCTATAAGATGGGTTG 59.111 41.667 0.00 0.00 36.09 3.77
451 471 4.584638 TGTTGGCTATAAGATGGGTTGT 57.415 40.909 0.00 0.00 0.00 3.32
452 472 5.702065 TGTTGGCTATAAGATGGGTTGTA 57.298 39.130 0.00 0.00 0.00 2.41
453 473 6.068461 TGTTGGCTATAAGATGGGTTGTAA 57.932 37.500 0.00 0.00 0.00 2.41
454 474 6.486056 TGTTGGCTATAAGATGGGTTGTAAA 58.514 36.000 0.00 0.00 0.00 2.01
455 475 7.122715 TGTTGGCTATAAGATGGGTTGTAAAT 58.877 34.615 0.00 0.00 0.00 1.40
456 476 7.068103 TGTTGGCTATAAGATGGGTTGTAAATG 59.932 37.037 0.00 0.00 0.00 2.32
457 477 6.905736 TGGCTATAAGATGGGTTGTAAATGA 58.094 36.000 0.00 0.00 0.00 2.57
458 478 6.770785 TGGCTATAAGATGGGTTGTAAATGAC 59.229 38.462 0.00 0.00 0.00 3.06
459 479 6.770785 GGCTATAAGATGGGTTGTAAATGACA 59.229 38.462 0.00 0.00 35.78 3.58
460 480 7.448469 GGCTATAAGATGGGTTGTAAATGACAT 59.552 37.037 0.00 0.00 38.07 3.06
461 481 8.292448 GCTATAAGATGGGTTGTAAATGACATG 58.708 37.037 0.00 0.00 38.07 3.21
462 482 5.920193 AAGATGGGTTGTAAATGACATGG 57.080 39.130 0.00 0.00 38.07 3.66
463 483 3.701040 AGATGGGTTGTAAATGACATGGC 59.299 43.478 0.00 0.00 38.07 4.40
464 484 2.881734 TGGGTTGTAAATGACATGGCA 58.118 42.857 2.18 2.18 38.07 4.92
465 485 2.560542 TGGGTTGTAAATGACATGGCAC 59.439 45.455 1.45 0.00 38.07 5.01
466 486 2.825532 GGGTTGTAAATGACATGGCACT 59.174 45.455 1.45 0.00 38.07 4.40
467 487 3.367292 GGGTTGTAAATGACATGGCACTG 60.367 47.826 1.45 0.00 38.07 3.66
468 488 3.505680 GGTTGTAAATGACATGGCACTGA 59.494 43.478 1.45 0.00 38.07 3.41
469 489 4.475944 GTTGTAAATGACATGGCACTGAC 58.524 43.478 1.45 0.00 38.07 3.51
470 490 4.019792 TGTAAATGACATGGCACTGACT 57.980 40.909 1.45 0.00 31.20 3.41
471 491 4.397420 TGTAAATGACATGGCACTGACTT 58.603 39.130 1.45 0.00 31.20 3.01
472 492 5.555966 TGTAAATGACATGGCACTGACTTA 58.444 37.500 1.45 0.00 31.20 2.24
473 493 6.179756 TGTAAATGACATGGCACTGACTTAT 58.820 36.000 1.45 0.00 31.20 1.73
474 494 7.334858 TGTAAATGACATGGCACTGACTTATA 58.665 34.615 1.45 0.00 31.20 0.98
475 495 6.932356 AAATGACATGGCACTGACTTATAG 57.068 37.500 1.45 0.00 0.00 1.31
476 496 3.797039 TGACATGGCACTGACTTATAGC 58.203 45.455 0.00 0.00 0.00 2.97
477 497 3.452264 TGACATGGCACTGACTTATAGCT 59.548 43.478 0.00 0.00 0.00 3.32
478 498 4.649218 TGACATGGCACTGACTTATAGCTA 59.351 41.667 0.00 0.00 0.00 3.32
479 499 5.207110 ACATGGCACTGACTTATAGCTAG 57.793 43.478 0.00 0.00 0.00 3.42
480 500 3.735237 TGGCACTGACTTATAGCTAGC 57.265 47.619 6.62 6.62 0.00 3.42
481 501 3.031013 TGGCACTGACTTATAGCTAGCA 58.969 45.455 18.83 3.19 0.00 3.49
482 502 3.068732 TGGCACTGACTTATAGCTAGCAG 59.931 47.826 18.83 7.92 0.00 4.24
483 503 3.056304 GCACTGACTTATAGCTAGCAGC 58.944 50.000 18.83 2.79 42.84 5.25
501 521 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
502 522 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
503 523 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
504 524 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
505 525 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
506 526 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
507 527 5.720202 TGGCTATACTATTAACCATGCTCG 58.280 41.667 0.00 0.00 0.00 5.03
508 528 5.479027 TGGCTATACTATTAACCATGCTCGA 59.521 40.000 0.00 0.00 0.00 4.04
509 529 6.014925 TGGCTATACTATTAACCATGCTCGAA 60.015 38.462 0.00 0.00 0.00 3.71
510 530 6.531948 GGCTATACTATTAACCATGCTCGAAG 59.468 42.308 0.00 0.00 0.00 3.79
511 531 7.091443 GCTATACTATTAACCATGCTCGAAGT 58.909 38.462 0.00 0.00 0.00 3.01
512 532 8.242053 GCTATACTATTAACCATGCTCGAAGTA 58.758 37.037 0.00 0.00 0.00 2.24
556 576 1.001293 CCCAAAGCCAAGAAAAGGAGC 59.999 52.381 0.00 0.00 0.00 4.70
656 676 4.100084 CTCTGACATGCGGGCCCA 62.100 66.667 24.92 2.47 0.00 5.36
759 790 2.936202 CAGAGAAGAGAGAGGGAGAGG 58.064 57.143 0.00 0.00 0.00 3.69
779 810 1.205417 GGTGGGAAAAGATGCATGGTG 59.795 52.381 2.46 0.00 0.00 4.17
780 811 1.895131 GTGGGAAAAGATGCATGGTGT 59.105 47.619 2.46 0.00 0.00 4.16
781 812 1.894466 TGGGAAAAGATGCATGGTGTG 59.106 47.619 2.46 0.00 0.00 3.82
782 813 1.895131 GGGAAAAGATGCATGGTGTGT 59.105 47.619 2.46 0.00 0.00 3.72
783 814 2.353011 GGGAAAAGATGCATGGTGTGTG 60.353 50.000 2.46 0.00 0.00 3.82
784 815 2.297033 GGAAAAGATGCATGGTGTGTGT 59.703 45.455 2.46 0.00 0.00 3.72
785 816 3.311106 GAAAAGATGCATGGTGTGTGTG 58.689 45.455 2.46 0.00 0.00 3.82
786 817 1.985473 AAGATGCATGGTGTGTGTGT 58.015 45.000 2.46 0.00 0.00 3.72
787 818 1.241165 AGATGCATGGTGTGTGTGTG 58.759 50.000 2.46 0.00 0.00 3.82
796 827 0.392461 GTGTGTGTGTGTGTGGAGGT 60.392 55.000 0.00 0.00 0.00 3.85
798 832 1.451207 TGTGTGTGTGTGGAGGTGC 60.451 57.895 0.00 0.00 0.00 5.01
810 844 2.906897 AGGTGCGGTGGTTGCTTG 60.907 61.111 0.00 0.00 0.00 4.01
855 889 2.170273 GTTCGGTGCGCTTTCGAC 59.830 61.111 9.73 0.00 38.10 4.20
887 921 2.148558 GATCTCGATGGCCGACCCTC 62.149 65.000 0.00 0.00 43.23 4.30
977 1011 4.379243 CGACAAGCACGCTCCCCT 62.379 66.667 0.00 0.00 0.00 4.79
980 1014 2.125106 CAAGCACGCTCCCCTACC 60.125 66.667 0.00 0.00 0.00 3.18
990 1024 2.523657 CCCCTACCGCCTCCTACC 60.524 72.222 0.00 0.00 0.00 3.18
1016 1050 3.826754 CATGGCCTGCAGCTGCTG 61.827 66.667 36.61 34.20 43.05 4.41
1036 1070 1.150536 GCTCAAGGGGTGGTGTTCA 59.849 57.895 0.00 0.00 0.00 3.18
1121 1155 4.662961 CACGGAGCTGTCGGTGCA 62.663 66.667 10.27 0.00 44.28 4.57
1122 1156 4.363990 ACGGAGCTGTCGGTGCAG 62.364 66.667 10.27 0.00 35.06 4.41
1207 1241 1.220749 GGCAGGTACATTCTGGCGA 59.779 57.895 8.10 0.00 45.39 5.54
1251 1285 4.598894 CTCTGCCAGGCGATCCCG 62.599 72.222 7.03 0.00 39.21 5.14
1359 1417 2.029964 AACATTCGCGTGGACGGT 59.970 55.556 5.77 0.00 40.23 4.83
1594 1652 4.303282 GAAGAAGACTGACAAGGTGAGTC 58.697 47.826 7.74 7.74 44.77 3.36
1609 1667 0.527385 GAGTCAGCTCTCACATCGCC 60.527 60.000 0.00 0.00 38.66 5.54
1610 1668 1.216444 GTCAGCTCTCACATCGCCA 59.784 57.895 0.00 0.00 0.00 5.69
1612 1670 1.812922 CAGCTCTCACATCGCCACC 60.813 63.158 0.00 0.00 0.00 4.61
1613 1671 2.265739 GCTCTCACATCGCCACCA 59.734 61.111 0.00 0.00 0.00 4.17
1614 1672 1.153289 GCTCTCACATCGCCACCAT 60.153 57.895 0.00 0.00 0.00 3.55
1615 1673 1.156645 GCTCTCACATCGCCACCATC 61.157 60.000 0.00 0.00 0.00 3.51
1616 1674 0.463204 CTCTCACATCGCCACCATCT 59.537 55.000 0.00 0.00 0.00 2.90
1617 1675 1.683385 CTCTCACATCGCCACCATCTA 59.317 52.381 0.00 0.00 0.00 1.98
1618 1676 2.101415 CTCTCACATCGCCACCATCTAA 59.899 50.000 0.00 0.00 0.00 2.10
1622 1680 3.449377 TCACATCGCCACCATCTAACTAA 59.551 43.478 0.00 0.00 0.00 2.24
1652 1710 8.981647 TCCAAACTGAAAACGATTTACTACTAC 58.018 33.333 0.00 0.00 0.00 2.73
1653 1711 8.985805 CCAAACTGAAAACGATTTACTACTACT 58.014 33.333 0.00 0.00 0.00 2.57
1721 1815 1.663695 AATGTATGTACTGGCACGGC 58.336 50.000 0.00 0.00 39.14 5.68
1777 1871 1.790623 ACACGTAACGCAATGACTCAC 59.209 47.619 0.00 0.00 0.00 3.51
2046 2141 1.679311 CAGGGGCAGCTCAACTACA 59.321 57.895 0.00 0.00 0.00 2.74
2869 2970 1.746615 CCACGGGGAAGATGCACAG 60.747 63.158 0.00 0.00 35.59 3.66
3043 3159 4.218200 TCAGCAAAGGAATTGTACCACATG 59.782 41.667 0.00 0.00 41.32 3.21
3179 3303 9.390795 GACGAGCTAGTAATTCATCGTTTTATA 57.609 33.333 0.00 0.00 42.81 0.98
3180 3304 9.395707 ACGAGCTAGTAATTCATCGTTTTATAG 57.604 33.333 0.00 0.00 40.16 1.31
3181 3305 9.608617 CGAGCTAGTAATTCATCGTTTTATAGA 57.391 33.333 0.00 0.00 0.00 1.98
3205 3329 8.826765 AGAAATAAGGTTCCTAAATCTCAGTCA 58.173 33.333 0.00 0.00 0.00 3.41
3206 3330 9.449719 GAAATAAGGTTCCTAAATCTCAGTCAA 57.550 33.333 0.00 0.00 0.00 3.18
3207 3331 8.794335 AATAAGGTTCCTAAATCTCAGTCAAC 57.206 34.615 0.00 0.00 0.00 3.18
3208 3332 6.441088 AAGGTTCCTAAATCTCAGTCAACT 57.559 37.500 0.00 0.00 0.00 3.16
3209 3333 5.799213 AGGTTCCTAAATCTCAGTCAACTG 58.201 41.667 3.69 3.69 45.08 3.16
3223 3347 7.055667 TCAGTCAACTGAGACTTAATCAAGT 57.944 36.000 8.75 0.00 46.26 3.16
3224 3348 7.344910 CAGTCAACTGAGACTTAATCAAGTC 57.655 40.000 0.00 0.00 46.26 3.01
3235 3359 6.734104 ACTTAATCAAGTCTCAGTCAATGC 57.266 37.500 0.00 0.00 41.25 3.56
3236 3360 6.471146 ACTTAATCAAGTCTCAGTCAATGCT 58.529 36.000 0.00 0.00 41.25 3.79
3237 3361 7.615403 ACTTAATCAAGTCTCAGTCAATGCTA 58.385 34.615 0.00 0.00 41.25 3.49
3238 3362 8.263640 ACTTAATCAAGTCTCAGTCAATGCTAT 58.736 33.333 0.00 0.00 41.25 2.97
3239 3363 9.755804 CTTAATCAAGTCTCAGTCAATGCTATA 57.244 33.333 0.00 0.00 0.00 1.31
3242 3366 9.624373 AATCAAGTCTCAGTCAATGCTATATTT 57.376 29.630 0.00 0.00 0.00 1.40
3247 3371 9.926158 AGTCTCAGTCAATGCTATATTTATGAG 57.074 33.333 0.00 0.00 33.44 2.90
3248 3372 9.920133 GTCTCAGTCAATGCTATATTTATGAGA 57.080 33.333 0.00 0.00 37.65 3.27
3267 3391 9.806203 TTATGAGATTTTACATGCAAATCCTTG 57.194 29.630 20.04 0.00 40.25 3.61
3297 3421 4.955925 TTTATGCAATACCACTTGACCG 57.044 40.909 0.00 0.00 0.00 4.79
3298 3422 2.779755 ATGCAATACCACTTGACCGA 57.220 45.000 0.00 0.00 0.00 4.69
3299 3423 2.093306 TGCAATACCACTTGACCGAG 57.907 50.000 0.00 0.00 0.00 4.63
3300 3424 1.621317 TGCAATACCACTTGACCGAGA 59.379 47.619 0.00 0.00 0.00 4.04
3301 3425 2.000447 GCAATACCACTTGACCGAGAC 59.000 52.381 0.00 0.00 0.00 3.36
3302 3426 2.353803 GCAATACCACTTGACCGAGACT 60.354 50.000 0.00 0.00 0.00 3.24
3303 3427 3.864921 GCAATACCACTTGACCGAGACTT 60.865 47.826 0.00 0.00 0.00 3.01
3304 3428 3.594603 ATACCACTTGACCGAGACTTG 57.405 47.619 0.00 0.00 0.00 3.16
3305 3429 0.393077 ACCACTTGACCGAGACTTGG 59.607 55.000 7.25 7.25 0.00 3.61
3306 3430 0.393077 CCACTTGACCGAGACTTGGT 59.607 55.000 14.73 14.73 44.10 3.67
3307 3431 1.202651 CCACTTGACCGAGACTTGGTT 60.203 52.381 15.92 0.00 40.63 3.67
3308 3432 2.036733 CCACTTGACCGAGACTTGGTTA 59.963 50.000 15.92 9.09 40.63 2.85
3309 3433 3.493699 CCACTTGACCGAGACTTGGTTAA 60.494 47.826 15.92 16.10 40.63 2.01
3322 3446 5.615925 ACTTGGTTAAGTCTCAGTCAACT 57.384 39.130 0.00 0.00 43.53 3.16
3323 3447 5.360591 ACTTGGTTAAGTCTCAGTCAACTG 58.639 41.667 3.69 3.69 43.53 3.16
3324 3448 5.128827 ACTTGGTTAAGTCTCAGTCAACTGA 59.871 40.000 12.07 12.07 45.53 3.41
3336 3460 4.657055 CAGTCAACTGAGATCTAGTCACG 58.343 47.826 4.05 0.00 46.59 4.35
3337 3461 3.127895 AGTCAACTGAGATCTAGTCACGC 59.872 47.826 0.00 0.00 0.00 5.34
3338 3462 2.423892 TCAACTGAGATCTAGTCACGCC 59.576 50.000 0.00 0.00 0.00 5.68
3339 3463 1.394618 ACTGAGATCTAGTCACGCCC 58.605 55.000 0.00 0.00 0.00 6.13
3340 3464 1.064314 ACTGAGATCTAGTCACGCCCT 60.064 52.381 0.00 0.00 0.00 5.19
3341 3465 2.028130 CTGAGATCTAGTCACGCCCTT 58.972 52.381 0.00 0.00 0.00 3.95
3342 3466 3.215151 CTGAGATCTAGTCACGCCCTTA 58.785 50.000 0.00 0.00 0.00 2.69
3343 3467 3.823873 CTGAGATCTAGTCACGCCCTTAT 59.176 47.826 0.00 0.00 0.00 1.73
3344 3468 4.981812 TGAGATCTAGTCACGCCCTTATA 58.018 43.478 0.00 0.00 0.00 0.98
3349 3473 6.550108 AGATCTAGTCACGCCCTTATAGAAAA 59.450 38.462 0.00 0.00 0.00 2.29
3356 3480 4.514066 CACGCCCTTATAGAAAATGGTACC 59.486 45.833 4.43 4.43 0.00 3.34
3377 3501 2.807676 GAATGCTTTCCCTCCTTTCCA 58.192 47.619 0.87 0.00 0.00 3.53
3408 3532 3.495001 GGTAGGCTTCATACGCTTCATTC 59.505 47.826 0.00 0.00 0.00 2.67
3409 3533 2.565841 AGGCTTCATACGCTTCATTCC 58.434 47.619 0.00 0.00 0.00 3.01
3429 3553 7.713507 TCATTCCTAGGGTAATGTTATTCAACG 59.286 37.037 18.14 0.00 37.48 4.10
3432 3556 7.798071 TCCTAGGGTAATGTTATTCAACGAAT 58.202 34.615 9.46 0.00 37.48 3.34
3444 3568 1.496934 CAACGAATGTTTGTTGGGGC 58.503 50.000 15.12 0.00 44.88 5.80
3452 3576 1.152376 TTTGTTGGGGCTGCATGGA 60.152 52.632 0.50 0.00 0.00 3.41
3457 3581 0.396060 TTGGGGCTGCATGGAAAAAC 59.604 50.000 0.50 0.00 0.00 2.43
3459 3583 1.079888 GGGCTGCATGGAAAAACGG 60.080 57.895 0.50 0.00 0.00 4.44
3461 3585 0.033366 GGCTGCATGGAAAAACGGTT 59.967 50.000 0.50 0.00 0.00 4.44
3496 3620 5.062558 GCAATTTATGTGTTGGAAGCATGAC 59.937 40.000 0.00 0.00 0.00 3.06
3510 3634 4.184079 AGCATGACAATTCTTTCAAGCC 57.816 40.909 0.00 0.00 37.19 4.35
3516 3640 4.159321 TGACAATTCTTTCAAGCCAACACA 59.841 37.500 0.00 0.00 0.00 3.72
3517 3641 5.083533 ACAATTCTTTCAAGCCAACACAA 57.916 34.783 0.00 0.00 0.00 3.33
3525 3649 5.793026 TTCAAGCCAACACAACAATTTTC 57.207 34.783 0.00 0.00 0.00 2.29
3527 3651 2.200899 AGCCAACACAACAATTTTCGC 58.799 42.857 0.00 0.00 0.00 4.70
3539 3663 6.427547 ACAACAATTTTCGCATCAAAATCCAT 59.572 30.769 0.00 0.00 35.35 3.41
3555 3679 4.961438 ATCCATTGTTTGGCAGAAGTTT 57.039 36.364 0.00 0.00 46.01 2.66
3571 3695 6.098679 CAGAAGTTTCCATGTGTTTTGAACA 58.901 36.000 0.00 0.00 39.52 3.18
3589 3713 6.205101 TGAACAAAATTGCCAAGCATTTTT 57.795 29.167 13.51 13.51 46.09 1.94
3623 3747 7.992180 ATCATAAAAGACATTCGCAATTTCC 57.008 32.000 0.00 0.00 0.00 3.13
3652 3776 2.290641 ACAACAAACTTTCGCTGGCTAG 59.709 45.455 0.00 0.00 0.00 3.42
3653 3777 2.256117 ACAAACTTTCGCTGGCTAGT 57.744 45.000 0.00 0.00 0.00 2.57
3657 3781 1.450312 CTTTCGCTGGCTAGTGGGG 60.450 63.158 11.01 0.00 35.14 4.96
3712 3837 6.833839 TCGTGAAAACAACGAAATAATAGGG 58.166 36.000 0.00 0.00 46.30 3.53
3714 3839 6.521821 CGTGAAAACAACGAAATAATAGGGTG 59.478 38.462 0.00 0.00 43.68 4.61
3734 3859 5.001232 GGTGACAAGGTGTGTATTGTATGT 58.999 41.667 0.00 0.00 41.96 2.29
3735 3860 5.472137 GGTGACAAGGTGTGTATTGTATGTT 59.528 40.000 0.00 0.00 41.96 2.71
3738 3863 6.768381 TGACAAGGTGTGTATTGTATGTTGAA 59.232 34.615 0.00 0.00 41.96 2.69
3752 3886 6.804677 TGTATGTTGAAAAGCTTGACACATT 58.195 32.000 15.22 0.00 0.00 2.71
3766 3900 6.582672 GCTTGACACATTTTAAAGTAGGCTTC 59.417 38.462 0.00 0.00 33.01 3.86
3781 3915 3.416156 AGGCTTCATCTTTTCTGTGGAC 58.584 45.455 0.00 0.00 0.00 4.02
3806 3940 5.944599 TGCGACCTACTCCTATATTAGAAGG 59.055 44.000 0.00 0.00 0.00 3.46
3807 3941 5.163632 GCGACCTACTCCTATATTAGAAGGC 60.164 48.000 0.00 0.00 32.55 4.35
3872 4008 4.067896 GCCACTTTGAGATTCTCTTCACA 58.932 43.478 14.54 0.00 0.00 3.58
3891 4027 1.869767 CAAGAGAAGTGCCACACTCAC 59.130 52.381 18.90 5.80 44.62 3.51
3903 4039 2.282251 ACTCACGGCTCGAGTCCA 60.282 61.111 20.87 2.87 39.56 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.786512 ATTGCCAAGGGTCGGTGCAT 62.787 55.000 0.00 0.00 0.00 3.96
33 34 2.992817 AATTGCCAAGGGTCGGTGCA 62.993 55.000 0.00 0.00 0.00 4.57
36 37 0.178975 TCAAATTGCCAAGGGTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
37 38 1.185315 ATCAAATTGCCAAGGGTCGG 58.815 50.000 0.00 0.00 0.00 4.79
38 39 2.609350 CAATCAAATTGCCAAGGGTCG 58.391 47.619 0.00 0.00 32.92 4.79
57 59 3.304721 AAGCGCCATTTGCCTGCA 61.305 55.556 2.29 0.00 36.24 4.41
59 61 1.444895 GTCAAGCGCCATTTGCCTG 60.445 57.895 2.29 0.00 36.24 4.85
78 80 2.914059 ACTTCAGTAAACCAACGCACT 58.086 42.857 0.00 0.00 0.00 4.40
87 89 5.751243 ACATGACACCAACTTCAGTAAAC 57.249 39.130 0.00 0.00 0.00 2.01
88 90 7.011950 CACTAACATGACACCAACTTCAGTAAA 59.988 37.037 0.00 0.00 0.00 2.01
96 98 3.390135 CGACACTAACATGACACCAACT 58.610 45.455 0.00 0.00 0.00 3.16
97 99 2.478894 CCGACACTAACATGACACCAAC 59.521 50.000 0.00 0.00 0.00 3.77
106 108 6.092955 TCTAACTGAAACCGACACTAACAT 57.907 37.500 0.00 0.00 0.00 2.71
107 109 5.518848 TCTAACTGAAACCGACACTAACA 57.481 39.130 0.00 0.00 0.00 2.41
108 110 6.154445 TGATCTAACTGAAACCGACACTAAC 58.846 40.000 0.00 0.00 0.00 2.34
111 113 4.322049 CCTGATCTAACTGAAACCGACACT 60.322 45.833 0.00 0.00 0.00 3.55
112 114 3.927142 CCTGATCTAACTGAAACCGACAC 59.073 47.826 0.00 0.00 0.00 3.67
113 115 3.056107 CCCTGATCTAACTGAAACCGACA 60.056 47.826 0.00 0.00 0.00 4.35
114 116 3.194968 TCCCTGATCTAACTGAAACCGAC 59.805 47.826 0.00 0.00 0.00 4.79
115 117 3.437213 TCCCTGATCTAACTGAAACCGA 58.563 45.455 0.00 0.00 0.00 4.69
116 118 3.887621 TCCCTGATCTAACTGAAACCG 57.112 47.619 0.00 0.00 0.00 4.44
117 119 9.442047 CATTATATCCCTGATCTAACTGAAACC 57.558 37.037 0.00 0.00 0.00 3.27
120 122 8.816894 GGACATTATATCCCTGATCTAACTGAA 58.183 37.037 0.00 0.00 0.00 3.02
122 124 8.256605 CAGGACATTATATCCCTGATCTAACTG 58.743 40.741 0.00 0.00 46.84 3.16
123 125 7.401493 CCAGGACATTATATCCCTGATCTAACT 59.599 40.741 8.68 0.00 46.84 2.24
124 126 7.400339 TCCAGGACATTATATCCCTGATCTAAC 59.600 40.741 8.68 0.00 46.84 2.34
125 127 7.487338 TCCAGGACATTATATCCCTGATCTAA 58.513 38.462 8.68 0.00 46.84 2.10
126 128 7.056522 TCCAGGACATTATATCCCTGATCTA 57.943 40.000 8.68 0.00 46.84 1.98
127 129 5.920347 TCCAGGACATTATATCCCTGATCT 58.080 41.667 8.68 0.00 46.84 2.75
128 130 6.627087 TTCCAGGACATTATATCCCTGATC 57.373 41.667 8.68 0.00 46.84 2.92
129 131 7.594849 AATTCCAGGACATTATATCCCTGAT 57.405 36.000 8.68 0.00 46.84 2.90
130 132 7.310423 CGTAATTCCAGGACATTATATCCCTGA 60.310 40.741 8.68 0.00 46.84 3.86
131 133 6.818644 CGTAATTCCAGGACATTATATCCCTG 59.181 42.308 0.00 0.00 44.29 4.45
132 134 6.729100 TCGTAATTCCAGGACATTATATCCCT 59.271 38.462 0.00 0.00 36.86 4.20
133 135 6.817140 GTCGTAATTCCAGGACATTATATCCC 59.183 42.308 0.00 0.00 36.86 3.85
134 136 6.530534 CGTCGTAATTCCAGGACATTATATCC 59.469 42.308 0.00 0.00 33.86 2.59
135 137 6.530534 CCGTCGTAATTCCAGGACATTATATC 59.469 42.308 0.00 0.00 33.86 1.63
172 192 1.143073 ACCAATCGGGGCTTAGATTCC 59.857 52.381 0.00 0.00 42.91 3.01
209 229 1.205893 ACTTGCTCTTCAGGTCGATCC 59.794 52.381 0.00 0.00 27.54 3.36
210 230 2.663826 ACTTGCTCTTCAGGTCGATC 57.336 50.000 0.00 0.00 27.54 3.69
211 231 5.854010 TTATACTTGCTCTTCAGGTCGAT 57.146 39.130 0.00 0.00 36.35 3.59
212 232 5.854010 ATTATACTTGCTCTTCAGGTCGA 57.146 39.130 0.00 0.00 36.35 4.20
222 242 7.754924 GCTGACTCATCTCTATTATACTTGCTC 59.245 40.741 0.00 0.00 0.00 4.26
223 243 7.232330 TGCTGACTCATCTCTATTATACTTGCT 59.768 37.037 0.00 0.00 0.00 3.91
224 244 7.374272 TGCTGACTCATCTCTATTATACTTGC 58.626 38.462 0.00 0.00 0.00 4.01
225 245 8.028354 CCTGCTGACTCATCTCTATTATACTTG 58.972 40.741 0.00 0.00 0.00 3.16
226 246 7.309744 GCCTGCTGACTCATCTCTATTATACTT 60.310 40.741 0.00 0.00 0.00 2.24
227 247 6.152661 GCCTGCTGACTCATCTCTATTATACT 59.847 42.308 0.00 0.00 0.00 2.12
228 248 6.152661 AGCCTGCTGACTCATCTCTATTATAC 59.847 42.308 0.00 0.00 0.00 1.47
230 250 5.085920 AGCCTGCTGACTCATCTCTATTAT 58.914 41.667 0.00 0.00 0.00 1.28
232 252 3.307506 AGCCTGCTGACTCATCTCTATT 58.692 45.455 0.00 0.00 0.00 1.73
233 253 2.961510 AGCCTGCTGACTCATCTCTAT 58.038 47.619 0.00 0.00 0.00 1.98
235 255 2.450867 TAGCCTGCTGACTCATCTCT 57.549 50.000 0.97 0.00 0.00 3.10
237 257 4.414677 TCATATAGCCTGCTGACTCATCT 58.585 43.478 0.97 0.00 0.00 2.90
239 259 5.557576 TTTCATATAGCCTGCTGACTCAT 57.442 39.130 0.97 0.00 0.00 2.90
240 260 5.557576 ATTTCATATAGCCTGCTGACTCA 57.442 39.130 0.97 0.00 0.00 3.41
241 261 7.659390 AGTTTATTTCATATAGCCTGCTGACTC 59.341 37.037 0.97 0.00 0.00 3.36
242 262 7.512992 AGTTTATTTCATATAGCCTGCTGACT 58.487 34.615 0.97 0.00 0.00 3.41
243 263 7.736447 AGTTTATTTCATATAGCCTGCTGAC 57.264 36.000 0.97 0.00 0.00 3.51
244 264 8.651389 ACTAGTTTATTTCATATAGCCTGCTGA 58.349 33.333 0.97 0.00 0.00 4.26
245 265 8.839310 ACTAGTTTATTTCATATAGCCTGCTG 57.161 34.615 0.97 0.00 0.00 4.41
265 285 9.614792 CCTCCAACTAAGCAAAAATATACTAGT 57.385 33.333 0.00 0.00 0.00 2.57
266 286 9.832445 TCCTCCAACTAAGCAAAAATATACTAG 57.168 33.333 0.00 0.00 0.00 2.57
268 288 9.528489 TTTCCTCCAACTAAGCAAAAATATACT 57.472 29.630 0.00 0.00 0.00 2.12
269 289 9.788960 CTTTCCTCCAACTAAGCAAAAATATAC 57.211 33.333 0.00 0.00 0.00 1.47
270 290 9.747898 TCTTTCCTCCAACTAAGCAAAAATATA 57.252 29.630 0.00 0.00 0.00 0.86
271 291 8.650143 TCTTTCCTCCAACTAAGCAAAAATAT 57.350 30.769 0.00 0.00 0.00 1.28
272 292 7.942341 TCTCTTTCCTCCAACTAAGCAAAAATA 59.058 33.333 0.00 0.00 0.00 1.40
273 293 6.777580 TCTCTTTCCTCCAACTAAGCAAAAAT 59.222 34.615 0.00 0.00 0.00 1.82
274 294 6.126409 TCTCTTTCCTCCAACTAAGCAAAAA 58.874 36.000 0.00 0.00 0.00 1.94
275 295 5.690865 TCTCTTTCCTCCAACTAAGCAAAA 58.309 37.500 0.00 0.00 0.00 2.44
276 296 5.304686 TCTCTTTCCTCCAACTAAGCAAA 57.695 39.130 0.00 0.00 0.00 3.68
277 297 4.974645 TCTCTTTCCTCCAACTAAGCAA 57.025 40.909 0.00 0.00 0.00 3.91
278 298 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
279 299 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
280 300 5.482175 TCCTCTTCTCTTTCCTCCAACTAAG 59.518 44.000 0.00 0.00 0.00 2.18
281 301 5.403512 TCCTCTTCTCTTTCCTCCAACTAA 58.596 41.667 0.00 0.00 0.00 2.24
282 302 5.011982 TCCTCTTCTCTTTCCTCCAACTA 57.988 43.478 0.00 0.00 0.00 2.24
283 303 3.837731 CTCCTCTTCTCTTTCCTCCAACT 59.162 47.826 0.00 0.00 0.00 3.16
284 304 3.835395 TCTCCTCTTCTCTTTCCTCCAAC 59.165 47.826 0.00 0.00 0.00 3.77
285 305 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
286 306 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
287 307 3.954258 CTCTCTCCTCTTCTCTTTCCTCC 59.046 52.174 0.00 0.00 0.00 4.30
288 308 4.855340 TCTCTCTCCTCTTCTCTTTCCTC 58.145 47.826 0.00 0.00 0.00 3.71
289 309 4.946160 TCTCTCTCCTCTTCTCTTTCCT 57.054 45.455 0.00 0.00 0.00 3.36
290 310 4.402474 CCTTCTCTCTCCTCTTCTCTTTCC 59.598 50.000 0.00 0.00 0.00 3.13
291 311 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
292 312 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
293 313 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
294 314 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
295 315 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
296 316 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
297 317 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
298 318 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
299 319 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
300 320 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
301 321 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
302 322 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
303 323 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
304 324 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
305 325 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
306 326 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
307 327 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
308 328 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
309 329 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
310 330 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
311 331 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
312 332 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
313 333 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
314 334 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
315 335 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
316 336 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
317 337 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
323 343 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
324 344 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
325 345 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
333 353 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
334 354 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
335 355 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
350 370 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
351 371 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
352 372 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
353 373 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
354 374 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
355 375 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
356 376 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
357 377 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
358 378 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
359 379 4.293415 CACCTTTCATTCTCACAAAGTGC 58.707 43.478 0.00 0.00 32.98 4.40
360 380 4.261741 CCCACCTTTCATTCTCACAAAGTG 60.262 45.833 0.00 0.00 34.45 3.16
361 381 3.891366 CCCACCTTTCATTCTCACAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
362 382 3.305608 GCCCACCTTTCATTCTCACAAAG 60.306 47.826 0.00 0.00 0.00 2.77
363 383 2.627699 GCCCACCTTTCATTCTCACAAA 59.372 45.455 0.00 0.00 0.00 2.83
364 384 2.238521 GCCCACCTTTCATTCTCACAA 58.761 47.619 0.00 0.00 0.00 3.33
365 385 1.547675 GGCCCACCTTTCATTCTCACA 60.548 52.381 0.00 0.00 0.00 3.58
366 386 1.177401 GGCCCACCTTTCATTCTCAC 58.823 55.000 0.00 0.00 0.00 3.51
367 387 0.776810 TGGCCCACCTTTCATTCTCA 59.223 50.000 0.00 0.00 36.63 3.27
368 388 1.177401 GTGGCCCACCTTTCATTCTC 58.823 55.000 1.17 0.00 36.63 2.87
369 389 0.482446 TGTGGCCCACCTTTCATTCT 59.518 50.000 12.25 0.00 36.63 2.40
370 390 1.560505 ATGTGGCCCACCTTTCATTC 58.439 50.000 12.25 0.00 36.63 2.67
371 391 2.917713 TATGTGGCCCACCTTTCATT 57.082 45.000 12.25 0.00 36.63 2.57
372 392 2.917713 TTATGTGGCCCACCTTTCAT 57.082 45.000 12.25 0.00 36.63 2.57
373 393 2.042297 TCATTATGTGGCCCACCTTTCA 59.958 45.455 12.25 0.00 36.63 2.69
374 394 2.733956 TCATTATGTGGCCCACCTTTC 58.266 47.619 12.25 0.00 36.63 2.62
375 395 2.917713 TCATTATGTGGCCCACCTTT 57.082 45.000 12.25 0.00 36.63 3.11
376 396 2.917713 TTCATTATGTGGCCCACCTT 57.082 45.000 12.25 1.15 36.63 3.50
377 397 2.917713 TTTCATTATGTGGCCCACCT 57.082 45.000 12.25 3.78 36.63 4.00
378 398 3.971245 TTTTTCATTATGTGGCCCACC 57.029 42.857 12.25 0.00 32.73 4.61
422 442 8.614814 ACCCATCTTATAGCCAACATGTATAAT 58.385 33.333 0.00 0.00 0.00 1.28
423 443 7.984475 ACCCATCTTATAGCCAACATGTATAA 58.016 34.615 0.00 0.00 0.00 0.98
424 444 7.568128 ACCCATCTTATAGCCAACATGTATA 57.432 36.000 0.00 0.00 0.00 1.47
425 445 6.454223 ACCCATCTTATAGCCAACATGTAT 57.546 37.500 0.00 0.00 0.00 2.29
426 446 5.904984 ACCCATCTTATAGCCAACATGTA 57.095 39.130 0.00 0.00 0.00 2.29
427 447 4.796110 ACCCATCTTATAGCCAACATGT 57.204 40.909 0.00 0.00 0.00 3.21
428 448 4.889409 ACAACCCATCTTATAGCCAACATG 59.111 41.667 0.00 0.00 0.00 3.21
429 449 5.129368 ACAACCCATCTTATAGCCAACAT 57.871 39.130 0.00 0.00 0.00 2.71
430 450 4.584638 ACAACCCATCTTATAGCCAACA 57.415 40.909 0.00 0.00 0.00 3.33
431 451 7.284489 TCATTTACAACCCATCTTATAGCCAAC 59.716 37.037 0.00 0.00 0.00 3.77
432 452 7.284489 GTCATTTACAACCCATCTTATAGCCAA 59.716 37.037 0.00 0.00 0.00 4.52
433 453 6.770785 GTCATTTACAACCCATCTTATAGCCA 59.229 38.462 0.00 0.00 0.00 4.75
434 454 6.770785 TGTCATTTACAACCCATCTTATAGCC 59.229 38.462 0.00 0.00 34.29 3.93
435 455 7.801716 TGTCATTTACAACCCATCTTATAGC 57.198 36.000 0.00 0.00 34.29 2.97
436 456 8.786898 CCATGTCATTTACAACCCATCTTATAG 58.213 37.037 0.00 0.00 42.70 1.31
437 457 7.230510 GCCATGTCATTTACAACCCATCTTATA 59.769 37.037 0.00 0.00 42.70 0.98
438 458 6.040842 GCCATGTCATTTACAACCCATCTTAT 59.959 38.462 0.00 0.00 42.70 1.73
439 459 5.359576 GCCATGTCATTTACAACCCATCTTA 59.640 40.000 0.00 0.00 42.70 2.10
440 460 4.160252 GCCATGTCATTTACAACCCATCTT 59.840 41.667 0.00 0.00 42.70 2.40
441 461 3.701040 GCCATGTCATTTACAACCCATCT 59.299 43.478 0.00 0.00 42.70 2.90
442 462 3.446873 TGCCATGTCATTTACAACCCATC 59.553 43.478 0.00 0.00 42.70 3.51
443 463 3.195396 GTGCCATGTCATTTACAACCCAT 59.805 43.478 0.00 0.00 42.70 4.00
444 464 2.560542 GTGCCATGTCATTTACAACCCA 59.439 45.455 0.00 0.00 42.70 4.51
445 465 2.825532 AGTGCCATGTCATTTACAACCC 59.174 45.455 0.00 0.00 42.70 4.11
446 466 3.505680 TCAGTGCCATGTCATTTACAACC 59.494 43.478 0.00 0.00 42.70 3.77
447 467 4.216257 AGTCAGTGCCATGTCATTTACAAC 59.784 41.667 0.00 0.00 42.70 3.32
448 468 4.397420 AGTCAGTGCCATGTCATTTACAA 58.603 39.130 0.00 0.00 42.70 2.41
449 469 4.019792 AGTCAGTGCCATGTCATTTACA 57.980 40.909 0.00 0.00 43.86 2.41
450 470 6.683974 ATAAGTCAGTGCCATGTCATTTAC 57.316 37.500 0.00 0.00 0.00 2.01
451 471 6.483307 GCTATAAGTCAGTGCCATGTCATTTA 59.517 38.462 0.00 0.00 0.00 1.40
452 472 5.297776 GCTATAAGTCAGTGCCATGTCATTT 59.702 40.000 0.00 0.00 0.00 2.32
453 473 4.818546 GCTATAAGTCAGTGCCATGTCATT 59.181 41.667 0.00 0.00 0.00 2.57
454 474 4.102210 AGCTATAAGTCAGTGCCATGTCAT 59.898 41.667 0.00 0.00 0.00 3.06
455 475 3.452264 AGCTATAAGTCAGTGCCATGTCA 59.548 43.478 0.00 0.00 0.00 3.58
456 476 4.065321 AGCTATAAGTCAGTGCCATGTC 57.935 45.455 0.00 0.00 0.00 3.06
457 477 4.502259 GCTAGCTATAAGTCAGTGCCATGT 60.502 45.833 7.70 0.00 0.00 3.21
458 478 3.993081 GCTAGCTATAAGTCAGTGCCATG 59.007 47.826 7.70 0.00 0.00 3.66
459 479 3.643320 TGCTAGCTATAAGTCAGTGCCAT 59.357 43.478 17.23 0.00 0.00 4.40
460 480 3.031013 TGCTAGCTATAAGTCAGTGCCA 58.969 45.455 17.23 0.00 0.00 4.92
461 481 3.648009 CTGCTAGCTATAAGTCAGTGCC 58.352 50.000 17.23 0.00 0.00 5.01
462 482 3.056304 GCTGCTAGCTATAAGTCAGTGC 58.944 50.000 17.23 0.00 38.45 4.40
479 499 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
480 500 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
481 501 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
482 502 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
483 503 5.807520 CGAGCATGGTTAATAGTATAGCCAG 59.192 44.000 0.00 2.11 39.18 4.85
484 504 5.479027 TCGAGCATGGTTAATAGTATAGCCA 59.521 40.000 0.00 3.65 39.96 4.75
485 505 5.962433 TCGAGCATGGTTAATAGTATAGCC 58.038 41.667 0.00 0.00 0.00 3.93
486 506 7.091443 ACTTCGAGCATGGTTAATAGTATAGC 58.909 38.462 0.00 0.00 0.00 2.97
489 509 7.545965 GCATACTTCGAGCATGGTTAATAGTAT 59.454 37.037 0.00 7.76 0.00 2.12
490 510 6.866770 GCATACTTCGAGCATGGTTAATAGTA 59.133 38.462 0.00 5.82 0.00 1.82
491 511 5.696724 GCATACTTCGAGCATGGTTAATAGT 59.303 40.000 0.00 3.76 0.00 2.12
492 512 5.696270 TGCATACTTCGAGCATGGTTAATAG 59.304 40.000 0.00 0.00 32.55 1.73
493 513 5.606505 TGCATACTTCGAGCATGGTTAATA 58.393 37.500 0.00 0.00 32.55 0.98
494 514 4.450976 TGCATACTTCGAGCATGGTTAAT 58.549 39.130 0.00 0.00 32.55 1.40
495 515 3.867857 TGCATACTTCGAGCATGGTTAA 58.132 40.909 0.00 0.00 32.55 2.01
496 516 3.457234 CTGCATACTTCGAGCATGGTTA 58.543 45.455 0.00 0.00 37.68 2.85
497 517 2.283298 CTGCATACTTCGAGCATGGTT 58.717 47.619 0.00 0.00 37.68 3.67
498 518 1.945387 CTGCATACTTCGAGCATGGT 58.055 50.000 0.00 0.00 37.68 3.55
499 519 0.585357 GCTGCATACTTCGAGCATGG 59.415 55.000 0.00 0.00 37.68 3.66
500 520 0.231534 CGCTGCATACTTCGAGCATG 59.768 55.000 0.00 0.00 37.68 4.06
501 521 1.493950 GCGCTGCATACTTCGAGCAT 61.494 55.000 0.00 0.00 37.68 3.79
502 522 2.167219 GCGCTGCATACTTCGAGCA 61.167 57.895 0.00 0.00 36.72 4.26
503 523 1.424493 AAGCGCTGCATACTTCGAGC 61.424 55.000 12.58 0.00 0.00 5.03
504 524 1.002366 AAAGCGCTGCATACTTCGAG 58.998 50.000 12.58 0.00 0.00 4.04
505 525 2.287393 TAAAGCGCTGCATACTTCGA 57.713 45.000 12.58 0.00 0.00 3.71
506 526 2.348666 ACTTAAAGCGCTGCATACTTCG 59.651 45.455 12.58 0.00 0.00 3.79
507 527 4.091424 CAACTTAAAGCGCTGCATACTTC 58.909 43.478 12.58 0.00 0.00 3.01
508 528 3.502211 ACAACTTAAAGCGCTGCATACTT 59.498 39.130 12.58 2.08 0.00 2.24
509 529 3.074412 ACAACTTAAAGCGCTGCATACT 58.926 40.909 12.58 0.00 0.00 2.12
510 530 3.125316 AGACAACTTAAAGCGCTGCATAC 59.875 43.478 12.58 0.00 0.00 2.39
511 531 3.334691 AGACAACTTAAAGCGCTGCATA 58.665 40.909 12.58 1.54 0.00 3.14
512 532 2.154462 AGACAACTTAAAGCGCTGCAT 58.846 42.857 12.58 2.72 0.00 3.96
513 533 1.531149 GAGACAACTTAAAGCGCTGCA 59.469 47.619 12.58 0.00 0.00 4.41
556 576 1.940883 TACAGGCACTACCGGAAGCG 61.941 60.000 9.46 0.00 46.52 4.68
562 582 3.452755 TGATGATTACAGGCACTACCG 57.547 47.619 0.00 0.00 46.52 4.02
759 790 1.205417 CACCATGCATCTTTTCCCACC 59.795 52.381 0.00 0.00 0.00 4.61
779 810 1.714899 GCACCTCCACACACACACAC 61.715 60.000 0.00 0.00 0.00 3.82
780 811 1.451207 GCACCTCCACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
781 812 2.534019 CGCACCTCCACACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
782 813 2.203001 CGCACCTCCACACACACA 60.203 61.111 0.00 0.00 0.00 3.72
783 814 2.972505 CCGCACCTCCACACACAC 60.973 66.667 0.00 0.00 0.00 3.82
784 815 3.475494 ACCGCACCTCCACACACA 61.475 61.111 0.00 0.00 0.00 3.72
785 816 2.972505 CACCGCACCTCCACACAC 60.973 66.667 0.00 0.00 0.00 3.82
786 817 4.248842 CCACCGCACCTCCACACA 62.249 66.667 0.00 0.00 0.00 3.72
787 818 3.767630 AACCACCGCACCTCCACAC 62.768 63.158 0.00 0.00 0.00 3.82
796 827 2.594303 CTCCAAGCAACCACCGCA 60.594 61.111 0.00 0.00 0.00 5.69
798 832 3.365265 GGCTCCAAGCAACCACCG 61.365 66.667 0.86 0.00 44.75 4.94
855 889 1.001706 TCGAGATCACGGCGAAATAGG 60.002 52.381 16.62 0.00 0.00 2.57
948 982 4.980805 TTGTCGTCGGTGGCAGGC 62.981 66.667 0.00 0.00 0.00 4.85
977 1011 4.445710 TGGCGGTAGGAGGCGGTA 62.446 66.667 0.00 0.00 36.92 4.02
1015 1049 4.641645 CACCACCCCTTGAGCGCA 62.642 66.667 11.47 0.00 0.00 6.09
1016 1050 4.643387 ACACCACCCCTTGAGCGC 62.643 66.667 0.00 0.00 0.00 5.92
1017 1051 1.966451 GAACACCACCCCTTGAGCG 60.966 63.158 0.00 0.00 0.00 5.03
1023 1057 2.203294 GCGTTGAACACCACCCCT 60.203 61.111 0.00 0.00 0.00 4.79
1101 1135 3.695606 ACCGACAGCTCCGTGCAT 61.696 61.111 0.00 0.00 45.94 3.96
1121 1155 4.742649 TCTCCGGCTCCTCGTGCT 62.743 66.667 0.00 0.00 0.00 4.40
1122 1156 3.708220 CTTCTCCGGCTCCTCGTGC 62.708 68.421 0.00 0.00 0.00 5.34
1185 1219 1.091771 CCAGAATGTACCTGCCGCTG 61.092 60.000 0.00 0.00 0.00 5.18
1594 1652 1.812922 GGTGGCGATGTGAGAGCTG 60.813 63.158 0.00 0.00 0.00 4.24
1596 1654 1.153289 ATGGTGGCGATGTGAGAGC 60.153 57.895 0.00 0.00 0.00 4.09
1609 1667 6.147821 CAGTTTGGAGTGTTAGTTAGATGGTG 59.852 42.308 0.00 0.00 0.00 4.17
1610 1668 6.042781 TCAGTTTGGAGTGTTAGTTAGATGGT 59.957 38.462 0.00 0.00 0.00 3.55
1612 1670 7.962964 TTCAGTTTGGAGTGTTAGTTAGATG 57.037 36.000 0.00 0.00 0.00 2.90
1613 1671 8.837389 GTTTTCAGTTTGGAGTGTTAGTTAGAT 58.163 33.333 0.00 0.00 0.00 1.98
1614 1672 7.010738 CGTTTTCAGTTTGGAGTGTTAGTTAGA 59.989 37.037 0.00 0.00 0.00 2.10
1615 1673 7.010738 TCGTTTTCAGTTTGGAGTGTTAGTTAG 59.989 37.037 0.00 0.00 0.00 2.34
1616 1674 6.817641 TCGTTTTCAGTTTGGAGTGTTAGTTA 59.182 34.615 0.00 0.00 0.00 2.24
1617 1675 5.644636 TCGTTTTCAGTTTGGAGTGTTAGTT 59.355 36.000 0.00 0.00 0.00 2.24
1618 1676 5.180271 TCGTTTTCAGTTTGGAGTGTTAGT 58.820 37.500 0.00 0.00 0.00 2.24
1622 1680 5.576447 AAATCGTTTTCAGTTTGGAGTGT 57.424 34.783 0.00 0.00 0.00 3.55
1667 1755 2.094700 GCCAAGCTAGCTTACCAAAACC 60.095 50.000 28.87 8.08 34.50 3.27
1668 1756 2.556622 TGCCAAGCTAGCTTACCAAAAC 59.443 45.455 28.87 13.45 34.50 2.43
1671 1759 1.613255 GGTGCCAAGCTAGCTTACCAA 60.613 52.381 30.46 16.43 34.20 3.67
1672 1760 0.035439 GGTGCCAAGCTAGCTTACCA 60.035 55.000 30.46 25.21 34.20 3.25
1673 1761 0.035439 TGGTGCCAAGCTAGCTTACC 60.035 55.000 29.45 29.45 34.46 2.85
1721 1815 1.885388 TGTCGTGAGTTTGGTGCCG 60.885 57.895 0.00 0.00 0.00 5.69
1789 1883 1.489574 CACCTACGTACGTGCAACAA 58.510 50.000 30.25 8.68 35.74 2.83
1795 1889 0.795735 CTTCCGCACCTACGTACGTG 60.796 60.000 30.25 17.12 0.00 4.49
2099 2194 1.751927 CCAGAAGATGCAGTGCCCC 60.752 63.158 13.72 4.06 0.00 5.80
2192 2287 1.376553 GGTGAGGAGGCTTGTCAGC 60.377 63.158 11.84 11.84 46.52 4.26
2195 2290 2.266055 CGGGTGAGGAGGCTTGTC 59.734 66.667 0.00 0.00 0.00 3.18
2869 2970 3.876589 TTGTCGACGCTGAAGGCCC 62.877 63.158 11.62 0.00 37.74 5.80
3043 3159 6.389906 AGAAATGCAAAACTATAGTTGGTGC 58.610 36.000 30.16 30.16 44.01 5.01
3179 3303 8.826765 TGACTGAGATTTAGGAACCTTATTTCT 58.173 33.333 0.00 0.00 0.00 2.52
3180 3304 9.449719 TTGACTGAGATTTAGGAACCTTATTTC 57.550 33.333 0.00 0.13 0.00 2.17
3181 3305 9.232473 GTTGACTGAGATTTAGGAACCTTATTT 57.768 33.333 0.00 0.00 0.00 1.40
3182 3306 8.606830 AGTTGACTGAGATTTAGGAACCTTATT 58.393 33.333 0.00 0.00 0.00 1.40
3183 3307 8.043710 CAGTTGACTGAGATTTAGGAACCTTAT 58.956 37.037 5.19 0.00 46.59 1.73
3184 3308 7.386851 CAGTTGACTGAGATTTAGGAACCTTA 58.613 38.462 5.19 0.00 46.59 2.69
3185 3309 6.234177 CAGTTGACTGAGATTTAGGAACCTT 58.766 40.000 5.19 0.00 46.59 3.50
3186 3310 5.799213 CAGTTGACTGAGATTTAGGAACCT 58.201 41.667 5.19 0.00 46.59 3.50
3199 3323 7.055667 ACTTGATTAAGTCTCAGTTGACTGA 57.944 36.000 12.83 12.83 45.53 3.41
3213 3337 6.981762 AGCATTGACTGAGACTTGATTAAG 57.018 37.500 0.00 0.00 39.86 1.85
3216 3340 9.624373 AAATATAGCATTGACTGAGACTTGATT 57.376 29.630 0.00 0.00 0.00 2.57
3221 3345 9.926158 CTCATAAATATAGCATTGACTGAGACT 57.074 33.333 0.00 0.00 30.49 3.24
3222 3346 9.920133 TCTCATAAATATAGCATTGACTGAGAC 57.080 33.333 0.00 0.00 32.70 3.36
3241 3365 9.806203 CAAGGATTTGCATGTAAAATCTCATAA 57.194 29.630 23.57 0.25 41.64 1.90
3274 3398 5.473846 TCGGTCAAGTGGTATTGCATAAAAA 59.526 36.000 0.00 0.00 0.00 1.94
3275 3399 5.004448 TCGGTCAAGTGGTATTGCATAAAA 58.996 37.500 0.00 0.00 0.00 1.52
3276 3400 4.580868 TCGGTCAAGTGGTATTGCATAAA 58.419 39.130 0.00 0.00 0.00 1.40
3277 3401 4.081365 TCTCGGTCAAGTGGTATTGCATAA 60.081 41.667 0.00 0.00 0.00 1.90
3278 3402 3.449377 TCTCGGTCAAGTGGTATTGCATA 59.551 43.478 0.00 0.00 0.00 3.14
3279 3403 2.236146 TCTCGGTCAAGTGGTATTGCAT 59.764 45.455 0.00 0.00 0.00 3.96
3280 3404 1.621317 TCTCGGTCAAGTGGTATTGCA 59.379 47.619 0.00 0.00 0.00 4.08
3281 3405 2.000447 GTCTCGGTCAAGTGGTATTGC 59.000 52.381 0.00 0.00 0.00 3.56
3282 3406 3.594603 AGTCTCGGTCAAGTGGTATTG 57.405 47.619 0.00 0.00 0.00 1.90
3283 3407 3.306780 CCAAGTCTCGGTCAAGTGGTATT 60.307 47.826 0.00 0.00 0.00 1.89
3284 3408 2.233922 CCAAGTCTCGGTCAAGTGGTAT 59.766 50.000 0.00 0.00 0.00 2.73
3285 3409 1.616865 CCAAGTCTCGGTCAAGTGGTA 59.383 52.381 0.00 0.00 0.00 3.25
3286 3410 0.393077 CCAAGTCTCGGTCAAGTGGT 59.607 55.000 0.00 0.00 0.00 4.16
3287 3411 0.393077 ACCAAGTCTCGGTCAAGTGG 59.607 55.000 0.00 0.00 27.30 4.00
3288 3412 2.240493 AACCAAGTCTCGGTCAAGTG 57.760 50.000 0.00 0.00 34.99 3.16
3289 3413 3.387050 ACTTAACCAAGTCTCGGTCAAGT 59.613 43.478 0.00 0.00 41.25 3.16
3290 3414 3.991367 ACTTAACCAAGTCTCGGTCAAG 58.009 45.455 0.00 0.00 41.25 3.02
3300 3424 5.360591 CAGTTGACTGAGACTTAACCAAGT 58.639 41.667 5.19 0.00 45.87 3.16
3301 3425 5.914085 CAGTTGACTGAGACTTAACCAAG 57.086 43.478 5.19 0.00 46.59 3.61
3314 3438 4.657055 CGTGACTAGATCTCAGTTGACTG 58.343 47.826 0.00 4.77 45.08 3.51
3315 3439 3.127895 GCGTGACTAGATCTCAGTTGACT 59.872 47.826 0.00 0.00 0.00 3.41
3316 3440 3.430931 GCGTGACTAGATCTCAGTTGAC 58.569 50.000 0.00 2.80 0.00 3.18
3317 3441 2.423892 GGCGTGACTAGATCTCAGTTGA 59.576 50.000 0.00 0.00 0.00 3.18
3318 3442 2.480416 GGGCGTGACTAGATCTCAGTTG 60.480 54.545 0.00 0.00 0.00 3.16
3319 3443 1.751924 GGGCGTGACTAGATCTCAGTT 59.248 52.381 0.00 0.00 0.00 3.16
3320 3444 1.064314 AGGGCGTGACTAGATCTCAGT 60.064 52.381 0.00 1.27 0.00 3.41
3321 3445 1.686355 AGGGCGTGACTAGATCTCAG 58.314 55.000 0.00 0.00 0.00 3.35
3322 3446 2.145397 AAGGGCGTGACTAGATCTCA 57.855 50.000 0.00 0.00 0.00 3.27
3323 3447 5.247084 TCTATAAGGGCGTGACTAGATCTC 58.753 45.833 0.00 0.00 0.00 2.75
3324 3448 5.244189 TCTATAAGGGCGTGACTAGATCT 57.756 43.478 0.00 0.00 0.00 2.75
3325 3449 5.961396 TTCTATAAGGGCGTGACTAGATC 57.039 43.478 0.00 0.00 0.00 2.75
3326 3450 6.726490 TTTTCTATAAGGGCGTGACTAGAT 57.274 37.500 0.00 0.00 0.00 1.98
3327 3451 6.462487 CCATTTTCTATAAGGGCGTGACTAGA 60.462 42.308 0.00 0.00 0.00 2.43
3328 3452 5.696724 CCATTTTCTATAAGGGCGTGACTAG 59.303 44.000 0.00 0.00 0.00 2.57
3329 3453 5.129815 ACCATTTTCTATAAGGGCGTGACTA 59.870 40.000 0.00 0.00 32.31 2.59
3330 3454 4.080526 ACCATTTTCTATAAGGGCGTGACT 60.081 41.667 0.00 0.00 32.31 3.41
3331 3455 4.196971 ACCATTTTCTATAAGGGCGTGAC 58.803 43.478 0.00 0.00 32.31 3.67
3332 3456 4.497291 ACCATTTTCTATAAGGGCGTGA 57.503 40.909 0.00 0.00 32.31 4.35
3333 3457 4.514066 GGTACCATTTTCTATAAGGGCGTG 59.486 45.833 7.15 0.00 32.31 5.34
3334 3458 4.711399 GGTACCATTTTCTATAAGGGCGT 58.289 43.478 7.15 0.00 32.31 5.68
3335 3459 3.744426 CGGTACCATTTTCTATAAGGGCG 59.256 47.826 13.54 0.00 32.31 6.13
3336 3460 4.964593 TCGGTACCATTTTCTATAAGGGC 58.035 43.478 13.54 0.00 32.31 5.19
3337 3461 6.072673 GCATTCGGTACCATTTTCTATAAGGG 60.073 42.308 13.54 0.00 35.17 3.95
3338 3462 6.710744 AGCATTCGGTACCATTTTCTATAAGG 59.289 38.462 13.54 0.00 0.00 2.69
3339 3463 7.730364 AGCATTCGGTACCATTTTCTATAAG 57.270 36.000 13.54 0.00 0.00 1.73
3340 3464 8.514330 AAAGCATTCGGTACCATTTTCTATAA 57.486 30.769 13.54 0.00 0.00 0.98
3341 3465 7.227910 GGAAAGCATTCGGTACCATTTTCTATA 59.772 37.037 13.54 0.00 36.36 1.31
3342 3466 6.039382 GGAAAGCATTCGGTACCATTTTCTAT 59.961 38.462 13.54 0.00 36.36 1.98
3343 3467 5.355910 GGAAAGCATTCGGTACCATTTTCTA 59.644 40.000 13.54 0.00 36.36 2.10
3344 3468 4.157840 GGAAAGCATTCGGTACCATTTTCT 59.842 41.667 13.54 0.00 36.36 2.52
3349 3473 1.564348 AGGGAAAGCATTCGGTACCAT 59.436 47.619 13.54 0.00 36.36 3.55
3356 3480 1.745653 GGAAAGGAGGGAAAGCATTCG 59.254 52.381 0.00 0.00 36.36 3.34
3386 3510 2.596904 TGAAGCGTATGAAGCCTACC 57.403 50.000 0.00 0.00 34.64 3.18
3387 3511 3.495001 GGAATGAAGCGTATGAAGCCTAC 59.505 47.826 0.00 0.00 34.64 3.18
3388 3512 3.388024 AGGAATGAAGCGTATGAAGCCTA 59.612 43.478 0.00 0.00 34.64 3.93
3389 3513 2.171448 AGGAATGAAGCGTATGAAGCCT 59.829 45.455 0.00 0.00 34.64 4.58
3390 3514 2.565841 AGGAATGAAGCGTATGAAGCC 58.434 47.619 0.00 0.00 34.64 4.35
3391 3515 3.743396 CCTAGGAATGAAGCGTATGAAGC 59.257 47.826 1.05 0.00 0.00 3.86
3392 3516 4.202264 ACCCTAGGAATGAAGCGTATGAAG 60.202 45.833 11.48 0.00 0.00 3.02
3393 3517 3.709653 ACCCTAGGAATGAAGCGTATGAA 59.290 43.478 11.48 0.00 0.00 2.57
3394 3518 3.305720 ACCCTAGGAATGAAGCGTATGA 58.694 45.455 11.48 0.00 0.00 2.15
3395 3519 3.753294 ACCCTAGGAATGAAGCGTATG 57.247 47.619 11.48 0.00 0.00 2.39
3396 3520 5.307196 ACATTACCCTAGGAATGAAGCGTAT 59.693 40.000 23.42 3.31 36.69 3.06
3397 3521 4.652421 ACATTACCCTAGGAATGAAGCGTA 59.348 41.667 23.42 7.88 36.69 4.42
3398 3522 3.454812 ACATTACCCTAGGAATGAAGCGT 59.545 43.478 23.42 8.76 36.69 5.07
3399 3523 4.073293 ACATTACCCTAGGAATGAAGCG 57.927 45.455 23.42 3.48 36.69 4.68
3408 3532 7.497909 ACATTCGTTGAATAACATTACCCTAGG 59.502 37.037 0.06 0.06 36.58 3.02
3409 3533 8.433421 ACATTCGTTGAATAACATTACCCTAG 57.567 34.615 0.00 0.00 36.58 3.02
3429 3553 0.392336 TGCAGCCCCAACAAACATTC 59.608 50.000 0.00 0.00 0.00 2.67
3432 3556 1.747145 CATGCAGCCCCAACAAACA 59.253 52.632 0.00 0.00 0.00 2.83
3444 3568 2.507339 ACAACCGTTTTTCCATGCAG 57.493 45.000 0.00 0.00 0.00 4.41
3457 3581 4.873768 AAATTGCCTTGAAAAACAACCG 57.126 36.364 0.00 0.00 34.56 4.44
3459 3583 7.693020 ACACATAAATTGCCTTGAAAAACAAC 58.307 30.769 0.00 0.00 34.56 3.32
3461 3585 7.201679 CCAACACATAAATTGCCTTGAAAAACA 60.202 33.333 0.00 0.00 0.00 2.83
3467 3591 5.782047 CTTCCAACACATAAATTGCCTTGA 58.218 37.500 0.00 0.00 0.00 3.02
3496 3620 4.869297 TGTTGTGTTGGCTTGAAAGAATTG 59.131 37.500 0.00 0.00 0.00 2.32
3510 3634 5.386810 TTGATGCGAAAATTGTTGTGTTG 57.613 34.783 0.00 0.00 0.00 3.33
3516 3640 7.041235 ACAATGGATTTTGATGCGAAAATTGTT 60.041 29.630 0.00 0.00 36.00 2.83
3517 3641 6.427547 ACAATGGATTTTGATGCGAAAATTGT 59.572 30.769 0.00 0.00 36.00 2.71
3539 3663 3.450457 ACATGGAAACTTCTGCCAAACAA 59.550 39.130 0.00 0.00 34.95 2.83
3546 3670 4.681744 TCAAAACACATGGAAACTTCTGC 58.318 39.130 0.00 0.00 0.00 4.26
3555 3679 5.065731 GGCAATTTTGTTCAAAACACATGGA 59.934 36.000 11.99 0.00 41.97 3.41
3611 3735 3.446873 TGTAAGGCATGGAAATTGCGAAT 59.553 39.130 0.00 0.00 41.07 3.34
3614 3738 2.923020 GTTGTAAGGCATGGAAATTGCG 59.077 45.455 0.00 0.00 41.07 4.85
3621 3745 4.261405 CGAAAGTTTGTTGTAAGGCATGGA 60.261 41.667 0.00 0.00 0.00 3.41
3623 3747 3.425193 GCGAAAGTTTGTTGTAAGGCATG 59.575 43.478 0.00 0.00 0.00 4.06
3668 3792 8.906636 TCACGACAACAAAACTAGTCTATATC 57.093 34.615 0.00 0.00 0.00 1.63
3670 3794 9.531942 TTTTCACGACAACAAAACTAGTCTATA 57.468 29.630 0.00 0.00 0.00 1.31
3701 3825 5.944007 ACACACCTTGTCACCCTATTATTTC 59.056 40.000 0.00 0.00 29.79 2.17
3712 3837 6.203915 TCAACATACAATACACACCTTGTCAC 59.796 38.462 0.00 0.00 39.91 3.67
3714 3839 6.795098 TCAACATACAATACACACCTTGTC 57.205 37.500 0.00 0.00 39.91 3.18
3734 3859 8.770438 ACTTTAAAATGTGTCAAGCTTTTCAA 57.230 26.923 0.00 0.00 0.00 2.69
3735 3860 9.515020 CTACTTTAAAATGTGTCAAGCTTTTCA 57.485 29.630 0.00 0.00 0.00 2.69
3738 3863 6.923508 GCCTACTTTAAAATGTGTCAAGCTTT 59.076 34.615 0.00 0.00 0.00 3.51
3752 3886 8.567948 CACAGAAAAGATGAAGCCTACTTTAAA 58.432 33.333 0.00 0.00 35.82 1.52
3766 3900 2.158449 GTCGCAGTCCACAGAAAAGATG 59.842 50.000 0.00 0.00 0.00 2.90
3781 3915 6.094325 CCTTCTAATATAGGAGTAGGTCGCAG 59.906 46.154 0.00 0.00 33.13 5.18
3806 3940 1.299773 CGAGCTCTTCCCTCATCGC 60.300 63.158 12.85 0.00 0.00 4.58
3807 3941 0.030101 GTCGAGCTCTTCCCTCATCG 59.970 60.000 12.85 0.00 0.00 3.84
3872 4008 1.539065 CGTGAGTGTGGCACTTCTCTT 60.539 52.381 28.49 9.31 45.44 2.85
3882 4018 2.126307 CTCGAGCCGTGAGTGTGG 60.126 66.667 0.00 0.00 0.00 4.17
3891 4027 0.319555 TGTCTTTTGGACTCGAGCCG 60.320 55.000 13.61 2.60 44.74 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.