Multiple sequence alignment - TraesCS3A01G038100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G038100 chr3A 100.000 2270 0 0 1 2270 20552939 20550670 0.000000e+00 4193.0
1 TraesCS3A01G038100 chr1D 87.500 1152 85 22 901 1996 474021204 474020056 0.000000e+00 1275.0
2 TraesCS3A01G038100 chr1D 86.174 1150 77 24 901 1997 251717853 251716733 0.000000e+00 1168.0
3 TraesCS3A01G038100 chr1D 94.531 256 12 2 1 254 309140772 309141027 5.880000e-106 394.0
4 TraesCS3A01G038100 chr1D 92.829 251 17 1 5 255 406843310 406843559 1.660000e-96 363.0
5 TraesCS3A01G038100 chr1D 92.829 251 17 1 5 255 406843892 406844141 1.660000e-96 363.0
6 TraesCS3A01G038100 chr1D 89.723 253 25 1 1 252 463160661 463160409 2.810000e-84 322.0
7 TraesCS3A01G038100 chr1D 88.583 254 24 5 1 253 306669786 306669537 1.020000e-78 303.0
8 TraesCS3A01G038100 chr6A 88.295 1085 86 14 948 1993 435592702 435593784 0.000000e+00 1262.0
9 TraesCS3A01G038100 chr6A 88.281 256 26 3 4 257 350839623 350839370 1.020000e-78 303.0
10 TraesCS3A01G038100 chr3D 86.661 1162 87 25 900 1997 588018967 588017810 0.000000e+00 1225.0
11 TraesCS3A01G038100 chr3D 89.713 418 35 7 296 711 15971256 15970845 5.550000e-146 527.0
12 TraesCS3A01G038100 chr3D 93.676 253 14 2 1 252 99746610 99746861 5.920000e-101 377.0
13 TraesCS3A01G038100 chr3D 89.328 253 14 6 2019 2270 15970525 15970285 2.830000e-79 305.0
14 TraesCS3A01G038100 chr3D 89.855 138 13 1 728 864 15970783 15970646 2.320000e-40 176.0
15 TraesCS3A01G038100 chr2B 86.515 1142 97 20 901 1986 484608424 484609564 0.000000e+00 1203.0
16 TraesCS3A01G038100 chr2D 87.418 1073 69 23 986 1996 607136114 607135046 0.000000e+00 1173.0
17 TraesCS3A01G038100 chr2D 89.317 805 68 7 1206 1993 609575497 609574694 0.000000e+00 994.0
18 TraesCS3A01G038100 chr2D 82.881 1069 123 28 952 1968 585387365 585386305 0.000000e+00 905.0
19 TraesCS3A01G038100 chr2D 84.937 717 65 20 935 1611 555511367 555510654 0.000000e+00 686.0
20 TraesCS3A01G038100 chr2D 94.553 257 12 2 1 255 334861332 334861076 1.630000e-106 396.0
21 TraesCS3A01G038100 chrUn 86.121 1124 101 21 923 1993 65866669 65867790 0.000000e+00 1160.0
22 TraesCS3A01G038100 chrUn 86.024 923 79 17 923 1796 453595370 453594449 0.000000e+00 944.0
23 TraesCS3A01G038100 chrUn 90.234 256 13 9 1 253 32305669 32305423 7.820000e-85 324.0
24 TraesCS3A01G038100 chrUn 91.707 205 15 2 1 205 479171542 479171340 1.330000e-72 283.0
25 TraesCS3A01G038100 chrUn 93.373 166 7 4 1 163 267490883 267491047 2.250000e-60 243.0
26 TraesCS3A01G038100 chrUn 84.305 223 30 3 35 252 357002896 357003118 1.770000e-51 213.0
27 TraesCS3A01G038100 chr7B 85.428 1146 106 26 901 1996 504953364 504952230 0.000000e+00 1134.0
28 TraesCS3A01G038100 chr7B 96.825 252 5 3 1 250 713349214 713349464 3.490000e-113 418.0
29 TraesCS3A01G038100 chr7B 96.000 250 10 0 1 250 165567697 165567448 7.550000e-110 407.0
30 TraesCS3A01G038100 chr6B 85.292 1149 108 28 901 1996 20089764 20088624 0.000000e+00 1129.0
31 TraesCS3A01G038100 chr6B 85.160 1159 97 30 901 1985 461906392 461907549 0.000000e+00 1118.0
32 TraesCS3A01G038100 chr6B 94.862 253 12 1 1 252 412957943 412957691 5.880000e-106 394.0
33 TraesCS3A01G038100 chr6B 94.862 253 10 2 1 252 154597349 154597599 2.110000e-105 392.0
34 TraesCS3A01G038100 chr6B 94.862 253 10 2 1 252 414341985 414342235 2.110000e-105 392.0
35 TraesCS3A01G038100 chr4D 87.653 980 56 18 904 1821 502490744 502491720 0.000000e+00 1079.0
36 TraesCS3A01G038100 chr4D 91.903 247 18 2 5 250 364572189 364572434 6.000000e-91 344.0
37 TraesCS3A01G038100 chr4D 80.242 248 48 1 5 252 147078789 147078543 3.850000e-43 185.0
38 TraesCS3A01G038100 chr4D 86.747 166 17 2 12 174 307615347 307615510 1.790000e-41 180.0
39 TraesCS3A01G038100 chr4D 85.143 175 19 4 77 250 190480406 190480574 3.000000e-39 172.0
40 TraesCS3A01G038100 chr4D 88.000 125 10 3 11 132 394896790 394896912 2.350000e-30 143.0
41 TraesCS3A01G038100 chr3B 84.444 1125 130 24 901 1987 818200445 818201562 0.000000e+00 1066.0
42 TraesCS3A01G038100 chr3B 84.458 1126 128 26 901 1987 818235982 818237099 0.000000e+00 1066.0
43 TraesCS3A01G038100 chr3B 96.443 253 5 4 1 250 591537627 591537376 4.510000e-112 414.0
44 TraesCS3A01G038100 chr3B 96.356 247 7 2 5 250 506326980 506326735 2.720000e-109 405.0
45 TraesCS3A01G038100 chr3B 90.336 238 15 4 2033 2270 23016514 23016743 2.830000e-79 305.0
46 TraesCS3A01G038100 chr1B 86.286 999 90 19 1038 1996 549451869 549450878 0.000000e+00 1042.0
47 TraesCS3A01G038100 chr1B 97.600 250 6 0 1 250 678849342 678849591 1.610000e-116 429.0
48 TraesCS3A01G038100 chr1B 94.071 253 14 1 1 252 212121522 212121774 1.270000e-102 383.0
49 TraesCS3A01G038100 chr1B 93.359 256 15 2 1 255 633923916 633924170 5.920000e-101 377.0
50 TraesCS3A01G038100 chr6D 85.714 1015 91 18 1034 1997 276398327 276399338 0.000000e+00 1022.0
51 TraesCS3A01G038100 chr6D 86.000 250 28 4 1 249 45614332 45614089 6.220000e-66 261.0
52 TraesCS3A01G038100 chr6D 82.119 151 12 9 6 155 222150533 222150397 5.120000e-22 115.0
53 TraesCS3A01G038100 chr4A 85.178 1039 98 20 1010 1993 589904004 589902967 0.000000e+00 1014.0
54 TraesCS3A01G038100 chr4A 95.618 251 9 2 1 249 65426371 65426621 3.510000e-108 401.0
55 TraesCS3A01G038100 chr7A 83.624 1148 111 38 900 1993 217379278 217380402 0.000000e+00 1007.0
56 TraesCS3A01G038100 chr7A 89.041 292 25 6 901 1188 732859769 732860057 2.770000e-94 355.0
57 TraesCS3A01G038100 chr7A 91.837 49 4 0 249 297 644484129 644484081 4.050000e-08 69.4
58 TraesCS3A01G038100 chr7D 89.136 810 69 3 1201 1993 565528956 565529763 0.000000e+00 990.0
59 TraesCS3A01G038100 chr7D 83.072 1146 127 28 910 1996 453308124 453306987 0.000000e+00 979.0
60 TraesCS3A01G038100 chr7D 83.111 450 40 22 901 1315 160432716 160433164 5.920000e-101 377.0
61 TraesCS3A01G038100 chr1A 88.589 815 70 9 1201 1993 159515121 159515934 0.000000e+00 968.0
62 TraesCS3A01G038100 chr1A 95.276 254 10 2 1 252 212015873 212016126 3.510000e-108 401.0
63 TraesCS3A01G038100 chr5B 96.825 252 5 3 1 250 496093584 496093834 3.490000e-113 418.0
64 TraesCS3A01G038100 chr5B 96.356 247 7 2 5 250 351571516 351571271 2.720000e-109 405.0
65 TraesCS3A01G038100 chr5B 82.974 417 46 12 901 1294 231733383 231733797 9.970000e-94 353.0
66 TraesCS3A01G038100 chr5B 96.000 50 2 0 249 298 581148363 581148412 5.200000e-12 82.4
67 TraesCS3A01G038100 chr5A 95.294 255 10 2 1 253 618669840 618669586 9.770000e-109 403.0
68 TraesCS3A01G038100 chr4B 95.238 252 7 5 1 250 546236055 546235807 5.880000e-106 394.0
69 TraesCS3A01G038100 chr4B 94.841 252 10 3 1 250 98328158 98328408 7.600000e-105 390.0
70 TraesCS3A01G038100 chr5D 96.154 52 1 1 245 296 340543841 340543891 1.440000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G038100 chr3A 20550670 20552939 2269 True 4193 4193 100.000 1 2270 1 chr3A.!!$R1 2269
1 TraesCS3A01G038100 chr1D 474020056 474021204 1148 True 1275 1275 87.500 901 1996 1 chr1D.!!$R4 1095
2 TraesCS3A01G038100 chr1D 251716733 251717853 1120 True 1168 1168 86.174 901 1997 1 chr1D.!!$R1 1096
3 TraesCS3A01G038100 chr1D 406843310 406844141 831 False 363 363 92.829 5 255 2 chr1D.!!$F2 250
4 TraesCS3A01G038100 chr6A 435592702 435593784 1082 False 1262 1262 88.295 948 1993 1 chr6A.!!$F1 1045
5 TraesCS3A01G038100 chr3D 588017810 588018967 1157 True 1225 1225 86.661 900 1997 1 chr3D.!!$R1 1097
6 TraesCS3A01G038100 chr3D 15970285 15971256 971 True 336 527 89.632 296 2270 3 chr3D.!!$R2 1974
7 TraesCS3A01G038100 chr2B 484608424 484609564 1140 False 1203 1203 86.515 901 1986 1 chr2B.!!$F1 1085
8 TraesCS3A01G038100 chr2D 607135046 607136114 1068 True 1173 1173 87.418 986 1996 1 chr2D.!!$R4 1010
9 TraesCS3A01G038100 chr2D 609574694 609575497 803 True 994 994 89.317 1206 1993 1 chr2D.!!$R5 787
10 TraesCS3A01G038100 chr2D 585386305 585387365 1060 True 905 905 82.881 952 1968 1 chr2D.!!$R3 1016
11 TraesCS3A01G038100 chr2D 555510654 555511367 713 True 686 686 84.937 935 1611 1 chr2D.!!$R2 676
12 TraesCS3A01G038100 chrUn 65866669 65867790 1121 False 1160 1160 86.121 923 1993 1 chrUn.!!$F1 1070
13 TraesCS3A01G038100 chrUn 453594449 453595370 921 True 944 944 86.024 923 1796 1 chrUn.!!$R2 873
14 TraesCS3A01G038100 chr7B 504952230 504953364 1134 True 1134 1134 85.428 901 1996 1 chr7B.!!$R2 1095
15 TraesCS3A01G038100 chr6B 20088624 20089764 1140 True 1129 1129 85.292 901 1996 1 chr6B.!!$R1 1095
16 TraesCS3A01G038100 chr6B 461906392 461907549 1157 False 1118 1118 85.160 901 1985 1 chr6B.!!$F3 1084
17 TraesCS3A01G038100 chr4D 502490744 502491720 976 False 1079 1079 87.653 904 1821 1 chr4D.!!$F5 917
18 TraesCS3A01G038100 chr3B 818200445 818201562 1117 False 1066 1066 84.444 901 1987 1 chr3B.!!$F2 1086
19 TraesCS3A01G038100 chr3B 818235982 818237099 1117 False 1066 1066 84.458 901 1987 1 chr3B.!!$F3 1086
20 TraesCS3A01G038100 chr1B 549450878 549451869 991 True 1042 1042 86.286 1038 1996 1 chr1B.!!$R1 958
21 TraesCS3A01G038100 chr6D 276398327 276399338 1011 False 1022 1022 85.714 1034 1997 1 chr6D.!!$F1 963
22 TraesCS3A01G038100 chr4A 589902967 589904004 1037 True 1014 1014 85.178 1010 1993 1 chr4A.!!$R1 983
23 TraesCS3A01G038100 chr7A 217379278 217380402 1124 False 1007 1007 83.624 900 1993 1 chr7A.!!$F1 1093
24 TraesCS3A01G038100 chr7D 565528956 565529763 807 False 990 990 89.136 1201 1993 1 chr7D.!!$F2 792
25 TraesCS3A01G038100 chr7D 453306987 453308124 1137 True 979 979 83.072 910 1996 1 chr7D.!!$R1 1086
26 TraesCS3A01G038100 chr1A 159515121 159515934 813 False 968 968 88.589 1201 1993 1 chr1A.!!$F1 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 845 0.108138 CCAAGGCCCTTCTAGACGTG 60.108 60.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 2150 0.036732 TATGCCTGAATCCGCCATCC 59.963 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.429692 TCCTACATTTGTCGTTTGATTCACAT 59.570 34.615 0.00 0.00 0.00 3.21
83 84 9.046296 CCTATGGAATCAAGTGTACTACATTTC 57.954 37.037 0.00 0.00 0.00 2.17
143 144 7.535139 TCAATTCCTTTGTTTTTCCTATAGCG 58.465 34.615 0.00 0.00 36.65 4.26
207 208 4.462483 TGCCACTCAAATCCTGTATTTTCC 59.538 41.667 0.00 0.00 35.54 3.13
214 215 8.560903 ACTCAAATCCTGTATTTTCCCTATTCT 58.439 33.333 0.00 0.00 35.54 2.40
216 217 8.556589 TCAAATCCTGTATTTTCCCTATTCTCA 58.443 33.333 0.00 0.00 35.54 3.27
218 219 5.914033 TCCTGTATTTTCCCTATTCTCACG 58.086 41.667 0.00 0.00 0.00 4.35
251 252 3.091545 CTGCAAATCAAAGAGGGCCTAA 58.908 45.455 5.73 0.00 0.00 2.69
253 254 2.428530 GCAAATCAAAGAGGGCCTAAGG 59.571 50.000 5.73 0.00 0.00 2.69
255 256 4.855340 CAAATCAAAGAGGGCCTAAGGTA 58.145 43.478 5.73 0.00 0.00 3.08
256 257 4.779993 AATCAAAGAGGGCCTAAGGTAG 57.220 45.455 5.73 0.00 0.00 3.18
257 258 3.484953 TCAAAGAGGGCCTAAGGTAGA 57.515 47.619 5.73 0.00 0.00 2.59
258 259 3.375699 TCAAAGAGGGCCTAAGGTAGAG 58.624 50.000 5.73 0.00 0.00 2.43
259 260 2.436173 CAAAGAGGGCCTAAGGTAGAGG 59.564 54.545 5.73 0.00 37.12 3.69
268 269 3.300013 AGGTAGAGGCGACCTTGC 58.700 61.111 3.30 0.00 45.40 4.01
269 270 1.305381 AGGTAGAGGCGACCTTGCT 60.305 57.895 3.30 0.00 45.40 3.91
270 271 1.153549 GGTAGAGGCGACCTTGCTG 60.154 63.158 0.00 0.00 31.76 4.41
271 272 1.605058 GGTAGAGGCGACCTTGCTGA 61.605 60.000 0.00 0.00 31.76 4.26
272 273 0.246635 GTAGAGGCGACCTTGCTGAA 59.753 55.000 0.00 0.00 31.76 3.02
273 274 0.532573 TAGAGGCGACCTTGCTGAAG 59.467 55.000 0.00 0.00 31.76 3.02
282 283 1.818642 CCTTGCTGAAGGGAAGTCAG 58.181 55.000 0.00 0.00 44.76 3.51
283 284 1.349026 CCTTGCTGAAGGGAAGTCAGA 59.651 52.381 5.63 0.00 44.76 3.27
284 285 2.614987 CCTTGCTGAAGGGAAGTCAGAG 60.615 54.545 5.63 0.00 44.76 3.35
285 286 0.979665 TGCTGAAGGGAAGTCAGAGG 59.020 55.000 5.63 0.00 44.44 3.69
286 287 1.270907 GCTGAAGGGAAGTCAGAGGA 58.729 55.000 5.63 0.00 44.44 3.71
287 288 1.836802 GCTGAAGGGAAGTCAGAGGAT 59.163 52.381 5.63 0.00 44.44 3.24
288 289 2.158971 GCTGAAGGGAAGTCAGAGGATC 60.159 54.545 5.63 0.00 44.44 3.36
289 290 2.433970 CTGAAGGGAAGTCAGAGGATCC 59.566 54.545 2.48 2.48 44.44 3.36
290 291 1.410882 GAAGGGAAGTCAGAGGATCCG 59.589 57.143 5.98 0.00 33.66 4.18
291 292 1.045911 AGGGAAGTCAGAGGATCCGC 61.046 60.000 7.52 7.52 33.66 5.54
292 293 1.066587 GGAAGTCAGAGGATCCGCG 59.933 63.158 10.07 0.00 33.66 6.46
293 294 1.590259 GAAGTCAGAGGATCCGCGC 60.590 63.158 10.07 0.00 33.66 6.86
294 295 2.962697 GAAGTCAGAGGATCCGCGCC 62.963 65.000 10.07 0.00 33.66 6.53
313 314 2.801631 CGTGATCCCTGCCCTCTCC 61.802 68.421 0.00 0.00 0.00 3.71
314 315 2.040464 TGATCCCTGCCCTCTCCC 60.040 66.667 0.00 0.00 0.00 4.30
348 349 4.295199 GGGGCCACGGGGTTTCTT 62.295 66.667 5.12 0.00 36.17 2.52
349 350 2.989253 GGGCCACGGGGTTTCTTG 60.989 66.667 5.12 0.00 36.17 3.02
350 351 3.680786 GGCCACGGGGTTTCTTGC 61.681 66.667 5.12 0.00 36.17 4.01
360 361 1.901464 GTTTCTTGCGGGGAAGGCA 60.901 57.895 0.00 0.00 38.93 4.75
370 371 1.475213 CGGGGAAGGCAGGAAAGATAC 60.475 57.143 0.00 0.00 0.00 2.24
373 374 3.481453 GGGAAGGCAGGAAAGATACATC 58.519 50.000 0.00 0.00 0.00 3.06
381 382 1.694696 GGAAAGATACATCGGGAGCCT 59.305 52.381 0.00 0.00 0.00 4.58
383 384 1.343069 AAGATACATCGGGAGCCTCC 58.657 55.000 0.73 0.73 35.23 4.30
384 385 0.188587 AGATACATCGGGAGCCTCCA 59.811 55.000 13.90 0.00 38.64 3.86
389 390 2.711899 ATCGGGAGCCTCCACCCTA 61.712 63.158 13.90 0.00 43.57 3.53
413 416 4.779733 GGTCGAGGGAGCAGGGGA 62.780 72.222 0.00 0.00 40.40 4.81
428 431 3.323243 CAGGGGACGTAACACTTTGTAG 58.677 50.000 0.00 0.00 0.00 2.74
429 432 2.071540 GGGGACGTAACACTTTGTAGC 58.928 52.381 0.00 0.00 0.00 3.58
430 433 2.071540 GGGACGTAACACTTTGTAGCC 58.928 52.381 0.00 0.00 0.00 3.93
431 434 2.071540 GGACGTAACACTTTGTAGCCC 58.928 52.381 0.00 0.00 0.00 5.19
432 435 2.548493 GGACGTAACACTTTGTAGCCCA 60.548 50.000 0.00 0.00 0.00 5.36
433 436 2.477754 GACGTAACACTTTGTAGCCCAC 59.522 50.000 0.00 0.00 0.00 4.61
434 437 1.458064 CGTAACACTTTGTAGCCCACG 59.542 52.381 0.00 0.00 0.00 4.94
435 438 2.486918 GTAACACTTTGTAGCCCACGT 58.513 47.619 0.00 0.00 0.00 4.49
436 439 2.047002 AACACTTTGTAGCCCACGTT 57.953 45.000 0.00 0.00 0.00 3.99
437 440 2.047002 ACACTTTGTAGCCCACGTTT 57.953 45.000 0.00 0.00 0.00 3.60
438 441 1.944709 ACACTTTGTAGCCCACGTTTC 59.055 47.619 0.00 0.00 0.00 2.78
439 442 1.944024 CACTTTGTAGCCCACGTTTCA 59.056 47.619 0.00 0.00 0.00 2.69
440 443 2.552315 CACTTTGTAGCCCACGTTTCAT 59.448 45.455 0.00 0.00 0.00 2.57
441 444 2.812011 ACTTTGTAGCCCACGTTTCATC 59.188 45.455 0.00 0.00 0.00 2.92
442 445 2.851263 TTGTAGCCCACGTTTCATCT 57.149 45.000 0.00 0.00 0.00 2.90
443 446 2.851263 TGTAGCCCACGTTTCATCTT 57.149 45.000 0.00 0.00 0.00 2.40
444 447 2.422597 TGTAGCCCACGTTTCATCTTG 58.577 47.619 0.00 0.00 0.00 3.02
445 448 2.037902 TGTAGCCCACGTTTCATCTTGA 59.962 45.455 0.00 0.00 0.00 3.02
446 449 2.496899 AGCCCACGTTTCATCTTGAT 57.503 45.000 0.00 0.00 0.00 2.57
447 450 2.359900 AGCCCACGTTTCATCTTGATC 58.640 47.619 0.00 0.00 0.00 2.92
448 451 1.401905 GCCCACGTTTCATCTTGATCC 59.598 52.381 0.00 0.00 0.00 3.36
449 452 2.017049 CCCACGTTTCATCTTGATCCC 58.983 52.381 0.00 0.00 0.00 3.85
450 453 1.665679 CCACGTTTCATCTTGATCCCG 59.334 52.381 0.00 0.00 0.00 5.14
451 454 2.616960 CACGTTTCATCTTGATCCCGA 58.383 47.619 0.00 0.00 0.00 5.14
452 455 3.198068 CACGTTTCATCTTGATCCCGAT 58.802 45.455 0.00 0.00 0.00 4.18
453 456 4.368315 CACGTTTCATCTTGATCCCGATA 58.632 43.478 0.00 0.00 0.00 2.92
454 457 4.445718 CACGTTTCATCTTGATCCCGATAG 59.554 45.833 0.00 0.00 0.00 2.08
455 458 4.341235 ACGTTTCATCTTGATCCCGATAGA 59.659 41.667 0.00 0.00 39.76 1.98
456 459 5.163447 ACGTTTCATCTTGATCCCGATAGAA 60.163 40.000 0.00 0.00 39.76 2.10
457 460 5.928839 CGTTTCATCTTGATCCCGATAGAAT 59.071 40.000 0.00 0.00 39.76 2.40
458 461 6.090088 CGTTTCATCTTGATCCCGATAGAATC 59.910 42.308 0.00 0.00 39.76 2.52
459 462 5.667539 TCATCTTGATCCCGATAGAATCC 57.332 43.478 0.00 0.00 39.76 3.01
460 463 5.086621 TCATCTTGATCCCGATAGAATCCA 58.913 41.667 0.00 0.00 39.76 3.41
461 464 5.723405 TCATCTTGATCCCGATAGAATCCAT 59.277 40.000 0.00 0.00 39.76 3.41
462 465 5.411831 TCTTGATCCCGATAGAATCCATG 57.588 43.478 0.00 0.00 39.76 3.66
463 466 5.086621 TCTTGATCCCGATAGAATCCATGA 58.913 41.667 0.00 0.00 39.76 3.07
464 467 4.808414 TGATCCCGATAGAATCCATGAC 57.192 45.455 0.00 0.00 39.76 3.06
465 468 4.420206 TGATCCCGATAGAATCCATGACT 58.580 43.478 0.00 0.00 39.76 3.41
466 469 4.840680 TGATCCCGATAGAATCCATGACTT 59.159 41.667 0.00 0.00 39.76 3.01
467 470 4.607293 TCCCGATAGAATCCATGACTTG 57.393 45.455 0.00 0.00 39.76 3.16
468 471 4.223144 TCCCGATAGAATCCATGACTTGA 58.777 43.478 0.00 0.00 39.76 3.02
469 472 4.653801 TCCCGATAGAATCCATGACTTGAA 59.346 41.667 0.00 0.00 39.76 2.69
470 473 5.130311 TCCCGATAGAATCCATGACTTGAAA 59.870 40.000 0.00 0.00 39.76 2.69
471 474 6.000219 CCCGATAGAATCCATGACTTGAAAT 59.000 40.000 0.00 0.00 39.76 2.17
472 475 6.148480 CCCGATAGAATCCATGACTTGAAATC 59.852 42.308 0.00 0.00 39.76 2.17
473 476 6.707608 CCGATAGAATCCATGACTTGAAATCA 59.292 38.462 0.00 0.00 39.76 2.57
474 477 7.389884 CCGATAGAATCCATGACTTGAAATCAT 59.610 37.037 0.00 0.00 36.03 2.45
475 478 9.428097 CGATAGAATCCATGACTTGAAATCATA 57.572 33.333 0.00 0.00 34.45 2.15
479 482 8.857098 AGAATCCATGACTTGAAATCATATTGG 58.143 33.333 0.00 0.00 34.99 3.16
480 483 8.543293 AATCCATGACTTGAAATCATATTGGT 57.457 30.769 0.00 0.00 34.99 3.67
481 484 7.337480 TCCATGACTTGAAATCATATTGGTG 57.663 36.000 0.00 0.00 34.99 4.17
482 485 6.891361 TCCATGACTTGAAATCATATTGGTGT 59.109 34.615 0.00 0.00 34.99 4.16
483 486 8.052141 TCCATGACTTGAAATCATATTGGTGTA 58.948 33.333 0.00 0.00 34.99 2.90
484 487 8.685427 CCATGACTTGAAATCATATTGGTGTAA 58.315 33.333 0.00 0.00 34.99 2.41
485 488 9.507280 CATGACTTGAAATCATATTGGTGTAAC 57.493 33.333 0.00 0.00 34.99 2.50
486 489 8.862325 TGACTTGAAATCATATTGGTGTAACT 57.138 30.769 0.00 0.00 36.74 2.24
487 490 8.946085 TGACTTGAAATCATATTGGTGTAACTC 58.054 33.333 0.00 0.00 36.74 3.01
488 491 9.167311 GACTTGAAATCATATTGGTGTAACTCT 57.833 33.333 0.00 0.00 36.74 3.24
489 492 9.167311 ACTTGAAATCATATTGGTGTAACTCTC 57.833 33.333 0.00 0.00 36.74 3.20
490 493 9.166173 CTTGAAATCATATTGGTGTAACTCTCA 57.834 33.333 0.00 0.00 36.74 3.27
491 494 8.722480 TGAAATCATATTGGTGTAACTCTCAG 57.278 34.615 0.00 0.00 36.74 3.35
492 495 8.321353 TGAAATCATATTGGTGTAACTCTCAGT 58.679 33.333 0.00 0.00 36.74 3.41
493 496 9.167311 GAAATCATATTGGTGTAACTCTCAGTT 57.833 33.333 0.00 0.00 41.97 3.16
494 497 9.520515 AAATCATATTGGTGTAACTCTCAGTTT 57.479 29.630 0.00 0.00 39.51 2.66
495 498 9.520515 AATCATATTGGTGTAACTCTCAGTTTT 57.479 29.630 0.00 0.00 39.51 2.43
503 506 9.431887 TGGTGTAACTCTCAGTTTTATCATAAC 57.568 33.333 0.00 0.00 39.51 1.89
504 507 8.880750 GGTGTAACTCTCAGTTTTATCATAACC 58.119 37.037 0.00 0.00 39.51 2.85
505 508 9.654663 GTGTAACTCTCAGTTTTATCATAACCT 57.345 33.333 0.00 0.00 39.51 3.50
515 518 9.708222 CAGTTTTATCATAACCTTTTCTGATCG 57.292 33.333 0.00 0.00 32.38 3.69
516 519 9.449719 AGTTTTATCATAACCTTTTCTGATCGT 57.550 29.630 0.00 0.00 32.38 3.73
517 520 9.490663 GTTTTATCATAACCTTTTCTGATCGTG 57.509 33.333 0.00 0.00 32.38 4.35
518 521 7.786178 TTATCATAACCTTTTCTGATCGTGG 57.214 36.000 0.00 0.00 32.38 4.94
519 522 5.160607 TCATAACCTTTTCTGATCGTGGT 57.839 39.130 0.00 0.00 0.00 4.16
520 523 5.556915 TCATAACCTTTTCTGATCGTGGTT 58.443 37.500 0.00 0.00 40.38 3.67
521 524 6.001460 TCATAACCTTTTCTGATCGTGGTTT 58.999 36.000 0.00 0.00 38.53 3.27
522 525 4.830826 AACCTTTTCTGATCGTGGTTTC 57.169 40.909 0.00 0.00 34.57 2.78
523 526 3.815809 ACCTTTTCTGATCGTGGTTTCA 58.184 40.909 0.00 0.00 0.00 2.69
524 527 4.398319 ACCTTTTCTGATCGTGGTTTCAT 58.602 39.130 0.00 0.00 0.00 2.57
525 528 4.827284 ACCTTTTCTGATCGTGGTTTCATT 59.173 37.500 0.00 0.00 0.00 2.57
526 529 5.301805 ACCTTTTCTGATCGTGGTTTCATTT 59.698 36.000 0.00 0.00 0.00 2.32
527 530 6.183360 ACCTTTTCTGATCGTGGTTTCATTTT 60.183 34.615 0.00 0.00 0.00 1.82
528 531 6.363357 CCTTTTCTGATCGTGGTTTCATTTTC 59.637 38.462 0.00 0.00 0.00 2.29
529 532 6.633500 TTTCTGATCGTGGTTTCATTTTCT 57.367 33.333 0.00 0.00 0.00 2.52
530 533 6.633500 TTCTGATCGTGGTTTCATTTTCTT 57.367 33.333 0.00 0.00 0.00 2.52
531 534 6.241207 TCTGATCGTGGTTTCATTTTCTTC 57.759 37.500 0.00 0.00 0.00 2.87
532 535 5.029650 TGATCGTGGTTTCATTTTCTTCG 57.970 39.130 0.00 0.00 0.00 3.79
533 536 4.752604 TGATCGTGGTTTCATTTTCTTCGA 59.247 37.500 0.00 0.00 0.00 3.71
534 537 5.411361 TGATCGTGGTTTCATTTTCTTCGAT 59.589 36.000 0.00 0.00 38.02 3.59
535 538 5.277601 TCGTGGTTTCATTTTCTTCGATC 57.722 39.130 0.00 0.00 0.00 3.69
536 539 4.994852 TCGTGGTTTCATTTTCTTCGATCT 59.005 37.500 0.00 0.00 0.00 2.75
537 540 6.160684 TCGTGGTTTCATTTTCTTCGATCTA 58.839 36.000 0.00 0.00 0.00 1.98
538 541 6.816640 TCGTGGTTTCATTTTCTTCGATCTAT 59.183 34.615 0.00 0.00 0.00 1.98
539 542 7.333423 TCGTGGTTTCATTTTCTTCGATCTATT 59.667 33.333 0.00 0.00 0.00 1.73
540 543 7.426456 CGTGGTTTCATTTTCTTCGATCTATTG 59.574 37.037 0.00 0.00 0.00 1.90
541 544 8.237267 GTGGTTTCATTTTCTTCGATCTATTGT 58.763 33.333 0.00 0.00 0.00 2.71
542 545 9.443323 TGGTTTCATTTTCTTCGATCTATTGTA 57.557 29.630 0.00 0.00 0.00 2.41
543 546 9.704098 GGTTTCATTTTCTTCGATCTATTGTAC 57.296 33.333 0.00 0.00 0.00 2.90
544 547 9.409949 GTTTCATTTTCTTCGATCTATTGTACG 57.590 33.333 0.00 0.00 0.00 3.67
545 548 7.694388 TCATTTTCTTCGATCTATTGTACGG 57.306 36.000 0.00 0.00 0.00 4.02
546 549 5.961395 TTTTCTTCGATCTATTGTACGGC 57.039 39.130 0.00 0.00 0.00 5.68
547 550 3.637998 TCTTCGATCTATTGTACGGCC 57.362 47.619 0.00 0.00 0.00 6.13
548 551 3.220110 TCTTCGATCTATTGTACGGCCT 58.780 45.455 0.00 0.00 0.00 5.19
549 552 3.635373 TCTTCGATCTATTGTACGGCCTT 59.365 43.478 0.00 0.00 0.00 4.35
550 553 4.098960 TCTTCGATCTATTGTACGGCCTTT 59.901 41.667 0.00 0.00 0.00 3.11
551 554 3.713288 TCGATCTATTGTACGGCCTTTG 58.287 45.455 0.00 0.00 0.00 2.77
552 555 2.800544 CGATCTATTGTACGGCCTTTGG 59.199 50.000 0.00 0.00 0.00 3.28
553 556 3.740141 CGATCTATTGTACGGCCTTTGGT 60.740 47.826 0.00 0.00 0.00 3.67
554 557 3.255969 TCTATTGTACGGCCTTTGGTC 57.744 47.619 0.00 0.00 0.00 4.02
555 558 2.568062 TCTATTGTACGGCCTTTGGTCA 59.432 45.455 0.00 0.00 0.00 4.02
556 559 2.279935 ATTGTACGGCCTTTGGTCAA 57.720 45.000 0.00 0.00 0.00 3.18
557 560 2.279935 TTGTACGGCCTTTGGTCAAT 57.720 45.000 0.00 0.00 0.00 2.57
558 561 1.816074 TGTACGGCCTTTGGTCAATC 58.184 50.000 0.00 0.00 0.00 2.67
559 562 1.072489 TGTACGGCCTTTGGTCAATCA 59.928 47.619 0.00 0.00 0.00 2.57
560 563 1.737793 GTACGGCCTTTGGTCAATCAG 59.262 52.381 0.00 0.00 0.00 2.90
561 564 0.110486 ACGGCCTTTGGTCAATCAGT 59.890 50.000 0.00 0.00 0.00 3.41
562 565 1.349688 ACGGCCTTTGGTCAATCAGTA 59.650 47.619 0.00 0.00 0.00 2.74
563 566 2.224670 ACGGCCTTTGGTCAATCAGTAA 60.225 45.455 0.00 0.00 0.00 2.24
564 567 2.817258 CGGCCTTTGGTCAATCAGTAAA 59.183 45.455 0.00 0.00 0.00 2.01
565 568 3.119849 CGGCCTTTGGTCAATCAGTAAAG 60.120 47.826 0.00 0.00 0.00 1.85
566 569 3.826729 GGCCTTTGGTCAATCAGTAAAGT 59.173 43.478 0.00 0.00 0.00 2.66
567 570 4.280929 GGCCTTTGGTCAATCAGTAAAGTT 59.719 41.667 0.00 0.00 0.00 2.66
568 571 5.222631 GCCTTTGGTCAATCAGTAAAGTTG 58.777 41.667 0.00 0.00 0.00 3.16
569 572 5.221244 GCCTTTGGTCAATCAGTAAAGTTGT 60.221 40.000 0.00 0.00 0.00 3.32
570 573 6.016610 GCCTTTGGTCAATCAGTAAAGTTGTA 60.017 38.462 0.00 0.00 0.00 2.41
571 574 7.309194 GCCTTTGGTCAATCAGTAAAGTTGTAT 60.309 37.037 0.00 0.00 0.00 2.29
572 575 8.237267 CCTTTGGTCAATCAGTAAAGTTGTATC 58.763 37.037 0.00 0.00 0.00 2.24
573 576 8.684386 TTTGGTCAATCAGTAAAGTTGTATCA 57.316 30.769 0.00 0.00 0.00 2.15
574 577 8.862325 TTGGTCAATCAGTAAAGTTGTATCAT 57.138 30.769 0.00 0.00 0.00 2.45
575 578 8.492673 TGGTCAATCAGTAAAGTTGTATCATC 57.507 34.615 0.00 0.00 0.00 2.92
576 579 8.100164 TGGTCAATCAGTAAAGTTGTATCATCA 58.900 33.333 0.00 0.00 0.00 3.07
577 580 9.113838 GGTCAATCAGTAAAGTTGTATCATCAT 57.886 33.333 0.00 0.00 0.00 2.45
616 619 9.320295 AGGAATAATTTTAAAGACCATCCAACA 57.680 29.630 11.56 0.00 0.00 3.33
617 620 9.586435 GGAATAATTTTAAAGACCATCCAACAG 57.414 33.333 6.56 0.00 0.00 3.16
618 621 9.586435 GAATAATTTTAAAGACCATCCAACAGG 57.414 33.333 0.00 0.00 0.00 4.00
619 622 6.994421 AATTTTAAAGACCATCCAACAGGT 57.006 33.333 0.00 0.00 41.83 4.00
628 631 5.982890 ACCATCCAACAGGTCAAATAAAG 57.017 39.130 0.00 0.00 30.79 1.85
629 632 5.393866 ACCATCCAACAGGTCAAATAAAGT 58.606 37.500 0.00 0.00 30.79 2.66
630 633 6.548321 ACCATCCAACAGGTCAAATAAAGTA 58.452 36.000 0.00 0.00 30.79 2.24
631 634 7.007723 ACCATCCAACAGGTCAAATAAAGTAA 58.992 34.615 0.00 0.00 30.79 2.24
632 635 7.507616 ACCATCCAACAGGTCAAATAAAGTAAA 59.492 33.333 0.00 0.00 30.79 2.01
633 636 8.364142 CCATCCAACAGGTCAAATAAAGTAAAA 58.636 33.333 0.00 0.00 0.00 1.52
634 637 9.927668 CATCCAACAGGTCAAATAAAGTAAAAT 57.072 29.630 0.00 0.00 0.00 1.82
635 638 9.927668 ATCCAACAGGTCAAATAAAGTAAAATG 57.072 29.630 0.00 0.00 0.00 2.32
636 639 8.919145 TCCAACAGGTCAAATAAAGTAAAATGT 58.081 29.630 0.00 0.00 0.00 2.71
664 667 8.996024 ATTTAAGTTTGGGTCCATAAATTTCG 57.004 30.769 0.00 0.00 0.00 3.46
665 668 7.762588 TTAAGTTTGGGTCCATAAATTTCGA 57.237 32.000 0.00 0.00 0.00 3.71
666 669 6.850752 AAGTTTGGGTCCATAAATTTCGAT 57.149 33.333 0.00 0.00 0.00 3.59
667 670 7.948034 AAGTTTGGGTCCATAAATTTCGATA 57.052 32.000 0.00 0.00 0.00 2.92
668 671 8.533569 AAGTTTGGGTCCATAAATTTCGATAT 57.466 30.769 0.00 0.00 0.00 1.63
669 672 8.533569 AGTTTGGGTCCATAAATTTCGATATT 57.466 30.769 0.00 0.00 0.00 1.28
670 673 9.635404 AGTTTGGGTCCATAAATTTCGATATTA 57.365 29.630 1.35 0.00 0.00 0.98
721 724 9.478768 TTCCGAATAAAAACAATTTTAGGAACC 57.521 29.630 8.19 0.00 42.56 3.62
722 725 7.808856 TCCGAATAAAAACAATTTTAGGAACCG 59.191 33.333 0.00 0.00 42.56 4.44
723 726 7.062488 CCGAATAAAAACAATTTTAGGAACCGG 59.938 37.037 0.00 0.00 42.56 5.28
724 727 7.595875 CGAATAAAAACAATTTTAGGAACCGGT 59.404 33.333 0.00 0.00 42.56 5.28
725 728 9.263538 GAATAAAAACAATTTTAGGAACCGGTT 57.736 29.630 22.50 22.50 42.56 4.44
726 729 8.821147 ATAAAAACAATTTTAGGAACCGGTTC 57.179 30.769 34.71 34.71 42.56 3.62
727 730 5.855740 AAACAATTTTAGGAACCGGTTCA 57.144 34.783 40.12 24.76 41.20 3.18
728 731 5.447624 AACAATTTTAGGAACCGGTTCAG 57.552 39.130 40.12 23.15 41.20 3.02
729 732 4.466827 ACAATTTTAGGAACCGGTTCAGT 58.533 39.130 40.12 30.44 41.20 3.41
730 733 5.623169 ACAATTTTAGGAACCGGTTCAGTA 58.377 37.500 40.12 29.49 41.20 2.74
731 734 6.063404 ACAATTTTAGGAACCGGTTCAGTAA 58.937 36.000 40.12 32.40 41.20 2.24
732 735 6.546772 ACAATTTTAGGAACCGGTTCAGTAAA 59.453 34.615 40.12 34.93 41.20 2.01
733 736 7.231925 ACAATTTTAGGAACCGGTTCAGTAAAT 59.768 33.333 40.12 33.27 41.20 1.40
734 737 7.770366 ATTTTAGGAACCGGTTCAGTAAATT 57.230 32.000 40.12 31.12 41.20 1.82
735 738 7.585579 TTTTAGGAACCGGTTCAGTAAATTT 57.414 32.000 40.12 20.36 41.20 1.82
736 739 7.585579 TTTAGGAACCGGTTCAGTAAATTTT 57.414 32.000 40.12 19.51 41.20 1.82
737 740 5.447624 AGGAACCGGTTCAGTAAATTTTG 57.552 39.130 40.12 0.00 41.20 2.44
738 741 5.134661 AGGAACCGGTTCAGTAAATTTTGA 58.865 37.500 40.12 0.00 41.20 2.69
739 742 5.009310 AGGAACCGGTTCAGTAAATTTTGAC 59.991 40.000 40.12 22.18 41.20 3.18
740 743 4.841443 ACCGGTTCAGTAAATTTTGACC 57.159 40.909 0.00 0.00 0.00 4.02
741 744 3.251487 ACCGGTTCAGTAAATTTTGACCG 59.749 43.478 0.00 17.67 37.55 4.79
742 745 3.251487 CCGGTTCAGTAAATTTTGACCGT 59.749 43.478 20.24 0.00 36.83 4.83
743 746 4.215965 CGGTTCAGTAAATTTTGACCGTG 58.784 43.478 17.00 2.07 35.37 4.94
744 747 3.978855 GGTTCAGTAAATTTTGACCGTGC 59.021 43.478 0.00 0.00 0.00 5.34
745 748 4.498345 GGTTCAGTAAATTTTGACCGTGCA 60.498 41.667 0.00 0.00 0.00 4.57
746 749 4.217754 TCAGTAAATTTTGACCGTGCAC 57.782 40.909 6.82 6.82 0.00 4.57
747 750 3.003897 TCAGTAAATTTTGACCGTGCACC 59.996 43.478 12.15 0.00 0.00 5.01
748 751 2.952978 AGTAAATTTTGACCGTGCACCA 59.047 40.909 12.15 0.00 0.00 4.17
749 752 2.969628 AAATTTTGACCGTGCACCAA 57.030 40.000 12.15 7.10 0.00 3.67
750 753 2.969628 AATTTTGACCGTGCACCAAA 57.030 40.000 12.15 13.03 0.00 3.28
751 754 3.467374 AATTTTGACCGTGCACCAAAT 57.533 38.095 16.96 9.21 30.98 2.32
752 755 2.969628 TTTTGACCGTGCACCAAATT 57.030 40.000 16.96 0.00 30.98 1.82
753 756 4.592485 ATTTTGACCGTGCACCAAATTA 57.408 36.364 16.96 7.08 30.98 1.40
754 757 4.592485 TTTTGACCGTGCACCAAATTAT 57.408 36.364 16.96 0.00 30.98 1.28
755 758 5.707242 TTTTGACCGTGCACCAAATTATA 57.293 34.783 16.96 3.72 30.98 0.98
756 759 5.707242 TTTGACCGTGCACCAAATTATAA 57.293 34.783 12.15 0.00 0.00 0.98
757 760 5.906113 TTGACCGTGCACCAAATTATAAT 57.094 34.783 12.15 0.00 0.00 1.28
758 761 5.493133 TGACCGTGCACCAAATTATAATC 57.507 39.130 12.15 0.00 0.00 1.75
759 762 5.189928 TGACCGTGCACCAAATTATAATCT 58.810 37.500 12.15 0.00 0.00 2.40
760 763 5.295787 TGACCGTGCACCAAATTATAATCTC 59.704 40.000 12.15 0.00 0.00 2.75
761 764 5.189928 ACCGTGCACCAAATTATAATCTCA 58.810 37.500 12.15 0.00 0.00 3.27
762 765 5.827797 ACCGTGCACCAAATTATAATCTCAT 59.172 36.000 12.15 0.00 0.00 2.90
763 766 6.321181 ACCGTGCACCAAATTATAATCTCATT 59.679 34.615 12.15 0.00 0.00 2.57
764 767 7.147915 ACCGTGCACCAAATTATAATCTCATTT 60.148 33.333 12.15 0.00 0.00 2.32
765 768 7.167968 CCGTGCACCAAATTATAATCTCATTTG 59.832 37.037 12.15 0.41 37.55 2.32
772 775 8.306761 CCAAATTATAATCTCATTTGGCCTACC 58.693 37.037 3.32 0.00 46.15 3.18
773 776 8.306761 CAAATTATAATCTCATTTGGCCTACCC 58.693 37.037 3.32 0.00 35.23 3.69
774 777 6.523035 TTATAATCTCATTTGGCCTACCCA 57.477 37.500 3.32 0.00 43.51 4.51
775 778 3.979501 AATCTCATTTGGCCTACCCAT 57.020 42.857 3.32 0.00 44.89 4.00
776 779 6.718593 ATAATCTCATTTGGCCTACCCATA 57.281 37.500 3.32 0.00 44.89 2.74
777 780 4.647564 ATCTCATTTGGCCTACCCATAG 57.352 45.455 3.32 0.00 44.89 2.23
778 781 2.106511 TCTCATTTGGCCTACCCATAGC 59.893 50.000 3.32 0.00 44.89 2.97
779 782 1.144913 TCATTTGGCCTACCCATAGCC 59.855 52.381 3.32 0.00 44.89 3.93
780 783 0.110486 ATTTGGCCTACCCATAGCCG 59.890 55.000 3.32 0.00 44.89 5.52
781 784 1.990160 TTTGGCCTACCCATAGCCGG 61.990 60.000 3.32 0.00 44.89 6.13
782 785 4.331067 GGCCTACCCATAGCCGGC 62.331 72.222 21.89 21.89 39.98 6.13
783 786 4.331067 GCCTACCCATAGCCGGCC 62.331 72.222 26.15 5.07 34.75 6.13
784 787 3.637273 CCTACCCATAGCCGGCCC 61.637 72.222 26.15 0.00 0.00 5.80
785 788 2.526873 CTACCCATAGCCGGCCCT 60.527 66.667 26.15 8.44 0.00 5.19
786 789 2.525877 TACCCATAGCCGGCCCTC 60.526 66.667 26.15 0.00 0.00 4.30
787 790 3.398365 TACCCATAGCCGGCCCTCA 62.398 63.158 26.15 6.44 0.00 3.86
788 791 2.689573 TACCCATAGCCGGCCCTCAT 62.690 60.000 26.15 6.59 0.00 2.90
789 792 2.348998 CCATAGCCGGCCCTCATC 59.651 66.667 26.15 0.00 0.00 2.92
790 793 2.519622 CCATAGCCGGCCCTCATCA 61.520 63.158 26.15 0.00 0.00 3.07
791 794 1.302033 CATAGCCGGCCCTCATCAC 60.302 63.158 26.15 0.00 0.00 3.06
792 795 1.766059 ATAGCCGGCCCTCATCACA 60.766 57.895 26.15 0.00 0.00 3.58
793 796 1.130054 ATAGCCGGCCCTCATCACAT 61.130 55.000 26.15 2.07 0.00 3.21
794 797 1.758440 TAGCCGGCCCTCATCACATC 61.758 60.000 26.15 0.00 0.00 3.06
795 798 2.111878 CCGGCCCTCATCACATCC 59.888 66.667 0.00 0.00 0.00 3.51
796 799 2.446848 CCGGCCCTCATCACATCCT 61.447 63.158 0.00 0.00 0.00 3.24
797 800 1.070445 CGGCCCTCATCACATCCTC 59.930 63.158 0.00 0.00 0.00 3.71
798 801 1.689243 CGGCCCTCATCACATCCTCA 61.689 60.000 0.00 0.00 0.00 3.86
799 802 0.179034 GGCCCTCATCACATCCTCAC 60.179 60.000 0.00 0.00 0.00 3.51
800 803 0.543277 GCCCTCATCACATCCTCACA 59.457 55.000 0.00 0.00 0.00 3.58
801 804 1.065199 GCCCTCATCACATCCTCACAA 60.065 52.381 0.00 0.00 0.00 3.33
802 805 2.618816 GCCCTCATCACATCCTCACAAA 60.619 50.000 0.00 0.00 0.00 2.83
803 806 3.689347 CCCTCATCACATCCTCACAAAA 58.311 45.455 0.00 0.00 0.00 2.44
804 807 4.275810 CCCTCATCACATCCTCACAAAAT 58.724 43.478 0.00 0.00 0.00 1.82
805 808 5.439721 CCCTCATCACATCCTCACAAAATA 58.560 41.667 0.00 0.00 0.00 1.40
806 809 6.066690 CCCTCATCACATCCTCACAAAATAT 58.933 40.000 0.00 0.00 0.00 1.28
807 810 6.016527 CCCTCATCACATCCTCACAAAATATG 60.017 42.308 0.00 0.00 0.00 1.78
808 811 6.544931 CCTCATCACATCCTCACAAAATATGT 59.455 38.462 0.00 0.00 45.34 2.29
824 827 3.432186 GTGCCCACACAGTGAACC 58.568 61.111 7.81 0.00 46.61 3.62
825 828 1.453015 GTGCCCACACAGTGAACCA 60.453 57.895 7.81 0.00 46.61 3.67
826 829 1.034838 GTGCCCACACAGTGAACCAA 61.035 55.000 7.81 0.00 46.61 3.67
827 830 0.751277 TGCCCACACAGTGAACCAAG 60.751 55.000 7.81 0.00 35.23 3.61
828 831 1.455383 GCCCACACAGTGAACCAAGG 61.455 60.000 7.81 0.00 35.23 3.61
829 832 1.455383 CCCACACAGTGAACCAAGGC 61.455 60.000 7.81 0.00 35.23 4.35
830 833 1.455383 CCACACAGTGAACCAAGGCC 61.455 60.000 7.81 0.00 35.23 5.19
831 834 1.152756 ACACAGTGAACCAAGGCCC 60.153 57.895 7.81 0.00 0.00 5.80
832 835 1.151450 CACAGTGAACCAAGGCCCT 59.849 57.895 0.00 0.00 0.00 5.19
833 836 0.468029 CACAGTGAACCAAGGCCCTT 60.468 55.000 0.00 0.00 0.00 3.95
834 837 0.178990 ACAGTGAACCAAGGCCCTTC 60.179 55.000 0.00 0.00 0.00 3.46
835 838 0.111253 CAGTGAACCAAGGCCCTTCT 59.889 55.000 0.00 0.00 0.00 2.85
836 839 1.351017 CAGTGAACCAAGGCCCTTCTA 59.649 52.381 0.00 0.00 0.00 2.10
837 840 1.630878 AGTGAACCAAGGCCCTTCTAG 59.369 52.381 0.00 0.00 0.00 2.43
838 841 1.628846 GTGAACCAAGGCCCTTCTAGA 59.371 52.381 0.00 0.00 0.00 2.43
839 842 1.628846 TGAACCAAGGCCCTTCTAGAC 59.371 52.381 0.00 0.00 0.00 2.59
840 843 0.613777 AACCAAGGCCCTTCTAGACG 59.386 55.000 0.00 0.00 0.00 4.18
841 844 0.544595 ACCAAGGCCCTTCTAGACGT 60.545 55.000 0.00 0.00 0.00 4.34
842 845 0.108138 CCAAGGCCCTTCTAGACGTG 60.108 60.000 0.00 0.00 0.00 4.49
843 846 0.608640 CAAGGCCCTTCTAGACGTGT 59.391 55.000 0.00 0.00 0.00 4.49
844 847 1.002087 CAAGGCCCTTCTAGACGTGTT 59.998 52.381 0.00 0.00 0.00 3.32
845 848 1.349067 AGGCCCTTCTAGACGTGTTT 58.651 50.000 0.00 0.00 0.00 2.83
846 849 1.697982 AGGCCCTTCTAGACGTGTTTT 59.302 47.619 0.00 0.00 0.00 2.43
847 850 2.105993 AGGCCCTTCTAGACGTGTTTTT 59.894 45.455 0.00 0.00 0.00 1.94
848 851 2.225727 GGCCCTTCTAGACGTGTTTTTG 59.774 50.000 0.00 0.00 0.00 2.44
849 852 2.876550 GCCCTTCTAGACGTGTTTTTGT 59.123 45.455 0.00 0.00 0.00 2.83
850 853 3.314357 GCCCTTCTAGACGTGTTTTTGTT 59.686 43.478 0.00 0.00 0.00 2.83
851 854 4.201980 GCCCTTCTAGACGTGTTTTTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
852 855 5.507974 CCCTTCTAGACGTGTTTTTGTTTC 58.492 41.667 0.00 0.00 0.00 2.78
853 856 5.296035 CCCTTCTAGACGTGTTTTTGTTTCT 59.704 40.000 0.00 0.00 0.00 2.52
854 857 6.192360 CCTTCTAGACGTGTTTTTGTTTCTG 58.808 40.000 0.00 0.00 0.00 3.02
855 858 6.036735 CCTTCTAGACGTGTTTTTGTTTCTGA 59.963 38.462 0.00 0.00 0.00 3.27
856 859 6.971527 TCTAGACGTGTTTTTGTTTCTGAA 57.028 33.333 0.00 0.00 0.00 3.02
857 860 7.367159 TCTAGACGTGTTTTTGTTTCTGAAA 57.633 32.000 0.00 0.00 0.00 2.69
858 861 7.808672 TCTAGACGTGTTTTTGTTTCTGAAAA 58.191 30.769 4.09 0.00 0.00 2.29
859 862 8.291032 TCTAGACGTGTTTTTGTTTCTGAAAAA 58.709 29.630 4.09 0.00 31.43 1.94
860 863 7.333288 AGACGTGTTTTTGTTTCTGAAAAAG 57.667 32.000 4.09 0.00 33.94 2.27
861 864 6.364976 AGACGTGTTTTTGTTTCTGAAAAAGG 59.635 34.615 4.09 0.00 33.94 3.11
862 865 5.107259 ACGTGTTTTTGTTTCTGAAAAAGGC 60.107 36.000 4.09 0.00 33.94 4.35
863 866 5.107298 CGTGTTTTTGTTTCTGAAAAAGGCA 60.107 36.000 4.09 0.00 33.94 4.75
864 867 6.402011 CGTGTTTTTGTTTCTGAAAAAGGCAT 60.402 34.615 4.09 0.00 33.94 4.40
865 868 6.742264 GTGTTTTTGTTTCTGAAAAAGGCATG 59.258 34.615 4.09 0.00 33.94 4.06
866 869 6.652481 TGTTTTTGTTTCTGAAAAAGGCATGA 59.348 30.769 4.09 0.00 33.94 3.07
867 870 6.907206 TTTTGTTTCTGAAAAAGGCATGAG 57.093 33.333 4.09 0.00 0.00 2.90
868 871 4.589216 TGTTTCTGAAAAAGGCATGAGG 57.411 40.909 4.09 0.00 0.00 3.86
869 872 3.960102 TGTTTCTGAAAAAGGCATGAGGT 59.040 39.130 4.09 0.00 0.00 3.85
870 873 4.037923 TGTTTCTGAAAAAGGCATGAGGTC 59.962 41.667 4.09 0.00 0.00 3.85
871 874 3.507162 TCTGAAAAAGGCATGAGGTCA 57.493 42.857 0.00 0.00 0.00 4.02
872 875 3.149196 TCTGAAAAAGGCATGAGGTCAC 58.851 45.455 0.00 0.00 0.00 3.67
873 876 1.879380 TGAAAAAGGCATGAGGTCACG 59.121 47.619 0.00 0.00 0.00 4.35
874 877 1.880027 GAAAAAGGCATGAGGTCACGT 59.120 47.619 0.00 0.00 0.00 4.49
875 878 1.238439 AAAAGGCATGAGGTCACGTG 58.762 50.000 9.94 9.94 0.00 4.49
876 879 0.396435 AAAGGCATGAGGTCACGTGA 59.604 50.000 15.76 15.76 0.00 4.35
877 880 0.396435 AAGGCATGAGGTCACGTGAA 59.604 50.000 21.95 4.71 0.00 3.18
878 881 0.320771 AGGCATGAGGTCACGTGAAC 60.321 55.000 26.17 26.17 0.00 3.18
879 882 0.602638 GGCATGAGGTCACGTGAACA 60.603 55.000 33.54 25.10 33.22 3.18
880 883 1.442769 GCATGAGGTCACGTGAACAT 58.557 50.000 33.54 26.00 33.22 2.71
881 884 1.129251 GCATGAGGTCACGTGAACATG 59.871 52.381 32.94 32.94 36.46 3.21
882 885 1.129251 CATGAGGTCACGTGAACATGC 59.871 52.381 33.54 22.11 33.22 4.06
883 886 0.602638 TGAGGTCACGTGAACATGCC 60.603 55.000 33.54 22.89 33.22 4.40
884 887 1.298859 GAGGTCACGTGAACATGCCC 61.299 60.000 33.54 22.19 33.22 5.36
885 888 1.599518 GGTCACGTGAACATGCCCA 60.600 57.895 28.28 0.00 0.00 5.36
886 889 0.960364 GGTCACGTGAACATGCCCAT 60.960 55.000 28.28 0.00 0.00 4.00
887 890 0.881118 GTCACGTGAACATGCCCATT 59.119 50.000 21.95 0.00 0.00 3.16
888 891 1.135689 GTCACGTGAACATGCCCATTC 60.136 52.381 21.95 0.00 0.00 2.67
889 892 0.880441 CACGTGAACATGCCCATTCA 59.120 50.000 10.90 0.00 32.44 2.57
890 893 1.473677 CACGTGAACATGCCCATTCAT 59.526 47.619 10.90 0.00 37.19 2.57
891 894 2.094597 CACGTGAACATGCCCATTCATT 60.095 45.455 10.90 0.00 37.19 2.57
892 895 2.164219 ACGTGAACATGCCCATTCATTC 59.836 45.455 0.00 0.00 37.19 2.67
893 896 2.164017 CGTGAACATGCCCATTCATTCA 59.836 45.455 0.00 0.00 37.19 2.57
894 897 3.367190 CGTGAACATGCCCATTCATTCAA 60.367 43.478 0.00 0.00 37.19 2.69
895 898 4.567971 GTGAACATGCCCATTCATTCAAA 58.432 39.130 0.00 0.00 37.19 2.69
896 899 4.628333 GTGAACATGCCCATTCATTCAAAG 59.372 41.667 0.00 0.00 37.19 2.77
897 900 3.899052 ACATGCCCATTCATTCAAAGG 57.101 42.857 0.00 0.00 0.00 3.11
898 901 2.502538 ACATGCCCATTCATTCAAAGGG 59.497 45.455 0.00 0.00 42.55 3.95
942 958 3.700350 CCTCCTCACCCCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
947 963 0.846870 CCTCACCCCCTCCCTTCTTT 60.847 60.000 0.00 0.00 0.00 2.52
1073 1098 3.665675 GAGCGGCGACTCCATTGGT 62.666 63.158 12.98 0.00 34.01 3.67
1155 1200 1.607612 GGATCCGGTGGTCATTGGT 59.392 57.895 0.00 0.00 0.00 3.67
1204 1309 1.925972 GCCTTCCCTCCTTCCCTGT 60.926 63.158 0.00 0.00 0.00 4.00
1284 1389 3.541632 GATCTAGTTTGGGCGAAATCCA 58.458 45.455 0.00 0.00 0.00 3.41
1467 1574 0.604243 TTCTTGAAGGCGCCGCTTTA 60.604 50.000 23.20 4.55 0.00 1.85
1573 1706 0.039764 AGGTGGAGGTCATCGTCTGA 59.960 55.000 0.00 0.00 0.00 3.27
1585 1718 1.227147 CGTCTGACGTTGTGGTGGT 60.227 57.895 21.30 0.00 36.74 4.16
1772 2048 3.838271 GGCAGATGGCTCGGTCGA 61.838 66.667 0.00 0.00 44.01 4.20
1834 2110 0.399833 TATGTGACCCAGCTTGCACA 59.600 50.000 9.32 9.32 44.31 4.57
1835 2111 0.251474 ATGTGACCCAGCTTGCACAT 60.251 50.000 12.27 12.27 44.15 3.21
1874 2150 4.343526 AGGAGTAGTGATAGATGTTGCCAG 59.656 45.833 0.00 0.00 0.00 4.85
1957 2390 2.829914 GCCGCATGCATCTCCCAA 60.830 61.111 19.57 0.00 40.77 4.12
1993 2450 4.950475 GGGGTCATCCTCCTTTTCTAAAAG 59.050 45.833 8.00 8.00 39.31 2.27
1998 2455 5.938125 TCATCCTCCTTTTCTAAAAGAACCG 59.062 40.000 15.16 0.98 46.39 4.44
2000 2457 5.548406 TCCTCCTTTTCTAAAAGAACCGAG 58.452 41.667 15.16 12.21 46.39 4.63
2001 2458 5.306160 TCCTCCTTTTCTAAAAGAACCGAGA 59.694 40.000 15.16 3.88 46.39 4.04
2002 2459 6.013639 TCCTCCTTTTCTAAAAGAACCGAGAT 60.014 38.462 15.16 0.00 46.39 2.75
2004 2461 7.988028 CCTCCTTTTCTAAAAGAACCGAGATAT 59.012 37.037 15.16 0.00 46.39 1.63
2005 2462 8.718102 TCCTTTTCTAAAAGAACCGAGATATG 57.282 34.615 15.16 0.00 46.39 1.78
2006 2463 8.537016 TCCTTTTCTAAAAGAACCGAGATATGA 58.463 33.333 15.16 0.00 46.39 2.15
2007 2464 9.331282 CCTTTTCTAAAAGAACCGAGATATGAT 57.669 33.333 15.16 0.00 46.39 2.45
2078 2554 1.202348 ACAGAGATGCATGTTCGACGA 59.798 47.619 2.46 0.00 0.00 4.20
2087 2563 0.319211 ATGTTCGACGACGCAAGGAA 60.319 50.000 1.48 0.00 46.39 3.36
2097 2573 5.622770 ACGACGCAAGGAAAAGATTTATT 57.377 34.783 0.00 0.00 46.39 1.40
2117 2593 8.997621 TTTATTGAGCAAGATACGAAGTTAGT 57.002 30.769 0.00 0.00 37.78 2.24
2130 2606 9.775060 GATACGAAGTTAGTATTACGATTTTGC 57.225 33.333 9.64 0.00 37.78 3.68
2131 2607 6.689547 ACGAAGTTAGTATTACGATTTTGCG 58.310 36.000 0.00 0.00 37.78 4.85
2133 2609 6.020440 CGAAGTTAGTATTACGATTTTGCGGA 60.020 38.462 0.00 0.00 35.12 5.54
2136 2612 4.468095 AGTATTACGATTTTGCGGATGC 57.532 40.909 0.00 0.00 43.20 3.91
2153 2629 2.874694 GCATGCACGCACGATCGAT 61.875 57.895 24.34 0.00 0.00 3.59
2156 2632 3.682315 GCACGCACGATCGATCCG 61.682 66.667 24.34 21.12 0.00 4.18
2171 2647 2.416244 ATCCGTCGTTCGCCGCATAT 62.416 55.000 0.00 0.00 38.35 1.78
2181 2657 3.394674 TCGCCGCATATTAATTCCTCA 57.605 42.857 0.00 0.00 0.00 3.86
2204 2680 2.034053 GGACGTGTTTCCATGCTTTTGA 59.966 45.455 0.00 0.00 35.49 2.69
2232 2708 2.307980 CCAGGTCAGGATATCCATGCAT 59.692 50.000 23.81 7.57 38.89 3.96
2242 2718 0.599558 ATCCATGCATGCATTACGGC 59.400 50.000 30.32 0.00 33.90 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.894339 AACGACAAATGTAGGAAAAATCCT 57.106 33.333 2.51 2.51 43.62 3.24
1 2 7.142680 TCAAACGACAAATGTAGGAAAAATCC 58.857 34.615 0.00 0.00 0.00 3.01
3 4 9.191995 GAATCAAACGACAAATGTAGGAAAAAT 57.808 29.630 0.00 0.00 0.00 1.82
11 12 7.195839 TCATGTGAATCAAACGACAAATGTA 57.804 32.000 0.00 0.00 32.04 2.29
13 14 7.326547 TCAATCATGTGAATCAAACGACAAATG 59.673 33.333 0.00 0.00 31.55 2.32
57 58 8.964476 AAATGTAGTACACTTGATTCCATAGG 57.036 34.615 4.80 0.00 0.00 2.57
63 64 8.946085 TCCAATGAAATGTAGTACACTTGATTC 58.054 33.333 4.80 6.43 0.00 2.52
83 84 4.518211 GGAGTGGATGCTAGATTTCCAATG 59.482 45.833 11.99 0.00 41.05 2.82
123 124 5.553123 TGACGCTATAGGAAAAACAAAGGA 58.447 37.500 1.04 0.00 0.00 3.36
129 130 6.147328 AGAGTGTTTGACGCTATAGGAAAAAC 59.853 38.462 1.04 8.47 39.36 2.43
138 139 4.392921 AGCATAGAGTGTTTGACGCTAT 57.607 40.909 0.00 0.00 45.59 2.97
143 144 9.632807 CTATAGGATTAGCATAGAGTGTTTGAC 57.367 37.037 0.00 0.00 0.00 3.18
207 208 7.023575 CAGGATTTTCAAAACGTGAGAATAGG 58.976 38.462 0.00 0.00 40.28 2.57
214 215 4.377839 TTGCAGGATTTTCAAAACGTGA 57.622 36.364 6.46 0.00 31.04 4.35
216 217 5.355596 TGATTTGCAGGATTTTCAAAACGT 58.644 33.333 0.00 0.00 34.00 3.99
218 219 7.918643 TCTTTGATTTGCAGGATTTTCAAAAC 58.081 30.769 0.00 0.00 33.97 2.43
253 254 0.246635 TTCAGCAAGGTCGCCTCTAC 59.753 55.000 0.00 0.00 30.89 2.59
255 256 1.294780 CTTCAGCAAGGTCGCCTCT 59.705 57.895 0.00 0.00 30.89 3.69
256 257 1.743252 CCTTCAGCAAGGTCGCCTC 60.743 63.158 0.00 0.00 44.11 4.70
257 258 2.348998 CCTTCAGCAAGGTCGCCT 59.651 61.111 0.00 0.00 44.11 5.52
264 265 2.614987 CCTCTGACTTCCCTTCAGCAAG 60.615 54.545 0.00 0.00 40.39 4.01
265 266 1.349026 CCTCTGACTTCCCTTCAGCAA 59.651 52.381 0.00 0.00 40.39 3.91
266 267 0.979665 CCTCTGACTTCCCTTCAGCA 59.020 55.000 0.00 0.00 40.39 4.41
267 268 1.270907 TCCTCTGACTTCCCTTCAGC 58.729 55.000 0.00 0.00 40.39 4.26
268 269 2.433970 GGATCCTCTGACTTCCCTTCAG 59.566 54.545 3.84 0.00 41.72 3.02
269 270 2.472029 GGATCCTCTGACTTCCCTTCA 58.528 52.381 3.84 0.00 0.00 3.02
270 271 1.410882 CGGATCCTCTGACTTCCCTTC 59.589 57.143 10.75 0.00 0.00 3.46
271 272 1.490574 CGGATCCTCTGACTTCCCTT 58.509 55.000 10.75 0.00 0.00 3.95
272 273 1.045911 GCGGATCCTCTGACTTCCCT 61.046 60.000 10.75 0.00 0.00 4.20
273 274 1.443828 GCGGATCCTCTGACTTCCC 59.556 63.158 10.75 0.00 0.00 3.97
274 275 1.066587 CGCGGATCCTCTGACTTCC 59.933 63.158 10.75 0.00 0.00 3.46
275 276 1.590259 GCGCGGATCCTCTGACTTC 60.590 63.158 8.83 0.00 0.00 3.01
276 277 2.496817 GCGCGGATCCTCTGACTT 59.503 61.111 8.83 0.00 0.00 3.01
277 278 3.532155 GGCGCGGATCCTCTGACT 61.532 66.667 8.83 0.00 0.00 3.41
278 279 4.593864 GGGCGCGGATCCTCTGAC 62.594 72.222 8.83 0.72 0.00 3.51
293 294 3.866582 GAGGGCAGGGATCACGGG 61.867 72.222 0.00 0.00 0.00 5.28
294 295 2.765807 AGAGGGCAGGGATCACGG 60.766 66.667 0.00 0.00 0.00 4.94
313 314 1.286880 CCTCTTTGTTTGGCAGCGG 59.713 57.895 0.00 0.00 0.00 5.52
314 315 1.286880 CCCTCTTTGTTTGGCAGCG 59.713 57.895 0.00 0.00 0.00 5.18
342 343 1.866853 CTGCCTTCCCCGCAAGAAAC 61.867 60.000 0.00 0.00 43.02 2.78
345 346 4.033776 CCTGCCTTCCCCGCAAGA 62.034 66.667 0.00 0.00 43.02 3.02
348 349 3.567579 CTTTCCTGCCTTCCCCGCA 62.568 63.158 0.00 0.00 34.41 5.69
349 350 2.558380 ATCTTTCCTGCCTTCCCCGC 62.558 60.000 0.00 0.00 0.00 6.13
350 351 0.837272 TATCTTTCCTGCCTTCCCCG 59.163 55.000 0.00 0.00 0.00 5.73
360 361 1.694696 GGCTCCCGATGTATCTTTCCT 59.305 52.381 0.00 0.00 0.00 3.36
370 371 3.866582 GGGTGGAGGCTCCCGATG 61.867 72.222 30.03 0.00 35.03 3.84
389 390 2.124236 CTCCCTCGACCTAGGCGT 60.124 66.667 20.20 0.00 35.09 5.68
413 416 2.486918 GTGGGCTACAAAGTGTTACGT 58.513 47.619 0.00 0.00 0.00 3.57
428 431 1.401905 GGATCAAGATGAAACGTGGGC 59.598 52.381 0.00 0.00 0.00 5.36
429 432 2.017049 GGGATCAAGATGAAACGTGGG 58.983 52.381 0.00 0.00 0.00 4.61
430 433 1.665679 CGGGATCAAGATGAAACGTGG 59.334 52.381 0.00 0.00 0.00 4.94
431 434 2.616960 TCGGGATCAAGATGAAACGTG 58.383 47.619 0.00 0.00 0.00 4.49
432 435 3.543680 ATCGGGATCAAGATGAAACGT 57.456 42.857 0.00 0.00 0.00 3.99
433 436 4.871513 TCTATCGGGATCAAGATGAAACG 58.128 43.478 11.11 0.00 0.00 3.60
434 437 6.370166 GGATTCTATCGGGATCAAGATGAAAC 59.630 42.308 11.11 10.47 0.00 2.78
435 438 6.043127 TGGATTCTATCGGGATCAAGATGAAA 59.957 38.462 11.11 6.68 0.00 2.69
436 439 5.543790 TGGATTCTATCGGGATCAAGATGAA 59.456 40.000 11.11 11.76 0.00 2.57
437 440 5.086621 TGGATTCTATCGGGATCAAGATGA 58.913 41.667 11.11 5.53 0.00 2.92
438 441 5.411831 TGGATTCTATCGGGATCAAGATG 57.588 43.478 11.11 3.78 0.00 2.90
439 442 5.723405 TCATGGATTCTATCGGGATCAAGAT 59.277 40.000 7.23 7.23 0.00 2.40
440 443 5.047021 GTCATGGATTCTATCGGGATCAAGA 60.047 44.000 0.00 0.00 0.00 3.02
441 444 5.046735 AGTCATGGATTCTATCGGGATCAAG 60.047 44.000 0.00 0.00 0.00 3.02
442 445 4.840680 AGTCATGGATTCTATCGGGATCAA 59.159 41.667 0.00 0.00 0.00 2.57
443 446 4.420206 AGTCATGGATTCTATCGGGATCA 58.580 43.478 0.00 0.00 0.00 2.92
444 447 5.047021 TCAAGTCATGGATTCTATCGGGATC 60.047 44.000 0.00 0.00 0.00 3.36
445 448 4.840680 TCAAGTCATGGATTCTATCGGGAT 59.159 41.667 0.00 0.00 0.00 3.85
446 449 4.223144 TCAAGTCATGGATTCTATCGGGA 58.777 43.478 0.00 0.00 0.00 5.14
447 450 4.607293 TCAAGTCATGGATTCTATCGGG 57.393 45.455 0.00 0.00 0.00 5.14
448 451 6.707608 TGATTTCAAGTCATGGATTCTATCGG 59.292 38.462 0.00 0.00 0.00 4.18
449 452 7.719778 TGATTTCAAGTCATGGATTCTATCG 57.280 36.000 0.00 0.00 0.00 2.92
453 456 8.857098 CCAATATGATTTCAAGTCATGGATTCT 58.143 33.333 5.67 0.00 36.96 2.40
454 457 8.636213 ACCAATATGATTTCAAGTCATGGATTC 58.364 33.333 5.67 0.00 36.96 2.52
455 458 8.418662 CACCAATATGATTTCAAGTCATGGATT 58.581 33.333 5.67 0.00 36.96 3.01
456 459 7.562454 ACACCAATATGATTTCAAGTCATGGAT 59.438 33.333 5.67 0.00 36.96 3.41
457 460 6.891361 ACACCAATATGATTTCAAGTCATGGA 59.109 34.615 5.67 0.00 36.96 3.41
458 461 7.104043 ACACCAATATGATTTCAAGTCATGG 57.896 36.000 5.67 2.93 36.96 3.66
459 462 9.507280 GTTACACCAATATGATTTCAAGTCATG 57.493 33.333 5.67 0.00 36.96 3.07
460 463 9.466497 AGTTACACCAATATGATTTCAAGTCAT 57.534 29.630 0.53 0.53 39.50 3.06
461 464 8.862325 AGTTACACCAATATGATTTCAAGTCA 57.138 30.769 0.00 0.00 0.00 3.41
462 465 9.167311 AGAGTTACACCAATATGATTTCAAGTC 57.833 33.333 0.00 0.00 0.00 3.01
463 466 9.167311 GAGAGTTACACCAATATGATTTCAAGT 57.833 33.333 0.00 0.00 0.00 3.16
464 467 9.166173 TGAGAGTTACACCAATATGATTTCAAG 57.834 33.333 0.00 0.00 0.00 3.02
465 468 9.166173 CTGAGAGTTACACCAATATGATTTCAA 57.834 33.333 0.00 0.00 0.00 2.69
466 469 8.321353 ACTGAGAGTTACACCAATATGATTTCA 58.679 33.333 0.00 0.00 0.00 2.69
467 470 8.723942 ACTGAGAGTTACACCAATATGATTTC 57.276 34.615 0.00 0.00 0.00 2.17
468 471 9.520515 AAACTGAGAGTTACACCAATATGATTT 57.479 29.630 0.00 0.00 37.47 2.17
469 472 9.520515 AAAACTGAGAGTTACACCAATATGATT 57.479 29.630 0.00 0.00 37.47 2.57
477 480 9.431887 GTTATGATAAAACTGAGAGTTACACCA 57.568 33.333 0.00 0.00 37.47 4.17
478 481 8.880750 GGTTATGATAAAACTGAGAGTTACACC 58.119 37.037 0.00 0.00 37.47 4.16
479 482 9.654663 AGGTTATGATAAAACTGAGAGTTACAC 57.345 33.333 0.00 0.00 37.47 2.90
489 492 9.708222 CGATCAGAAAAGGTTATGATAAAACTG 57.292 33.333 0.00 0.00 43.95 3.16
490 493 9.449719 ACGATCAGAAAAGGTTATGATAAAACT 57.550 29.630 0.00 0.00 43.95 2.66
491 494 9.490663 CACGATCAGAAAAGGTTATGATAAAAC 57.509 33.333 0.00 0.00 43.95 2.43
492 495 8.673711 CCACGATCAGAAAAGGTTATGATAAAA 58.326 33.333 0.00 0.00 43.95 1.52
493 496 7.827236 ACCACGATCAGAAAAGGTTATGATAAA 59.173 33.333 0.00 0.00 43.95 1.40
494 497 7.335627 ACCACGATCAGAAAAGGTTATGATAA 58.664 34.615 0.00 0.00 43.95 1.75
495 498 6.884832 ACCACGATCAGAAAAGGTTATGATA 58.115 36.000 0.00 0.00 43.95 2.15
496 499 5.745227 ACCACGATCAGAAAAGGTTATGAT 58.255 37.500 0.00 0.00 46.01 2.45
497 500 5.160607 ACCACGATCAGAAAAGGTTATGA 57.839 39.130 0.00 0.00 39.22 2.15
498 501 5.880054 AACCACGATCAGAAAAGGTTATG 57.120 39.130 0.00 0.00 37.57 1.90
499 502 6.001460 TGAAACCACGATCAGAAAAGGTTAT 58.999 36.000 0.00 0.00 38.32 1.89
500 503 5.369833 TGAAACCACGATCAGAAAAGGTTA 58.630 37.500 0.00 0.00 38.32 2.85
501 504 4.204012 TGAAACCACGATCAGAAAAGGTT 58.796 39.130 0.00 0.00 40.81 3.50
502 505 3.815809 TGAAACCACGATCAGAAAAGGT 58.184 40.909 0.00 0.00 0.00 3.50
503 506 5.376854 AATGAAACCACGATCAGAAAAGG 57.623 39.130 0.00 0.00 0.00 3.11
504 507 7.141363 AGAAAATGAAACCACGATCAGAAAAG 58.859 34.615 0.00 0.00 0.00 2.27
505 508 7.038154 AGAAAATGAAACCACGATCAGAAAA 57.962 32.000 0.00 0.00 0.00 2.29
506 509 6.633500 AGAAAATGAAACCACGATCAGAAA 57.367 33.333 0.00 0.00 0.00 2.52
507 510 6.565811 CGAAGAAAATGAAACCACGATCAGAA 60.566 38.462 0.00 0.00 0.00 3.02
508 511 5.107104 CGAAGAAAATGAAACCACGATCAGA 60.107 40.000 0.00 0.00 0.00 3.27
509 512 5.082059 CGAAGAAAATGAAACCACGATCAG 58.918 41.667 0.00 0.00 0.00 2.90
510 513 4.752604 TCGAAGAAAATGAAACCACGATCA 59.247 37.500 0.00 0.00 0.00 2.92
511 514 5.277601 TCGAAGAAAATGAAACCACGATC 57.722 39.130 0.00 0.00 0.00 3.69
512 515 5.643777 AGATCGAAGAAAATGAAACCACGAT 59.356 36.000 0.00 0.00 43.58 3.73
513 516 4.994852 AGATCGAAGAAAATGAAACCACGA 59.005 37.500 0.00 0.00 43.58 4.35
514 517 5.283060 AGATCGAAGAAAATGAAACCACG 57.717 39.130 0.00 0.00 43.58 4.94
515 518 8.237267 ACAATAGATCGAAGAAAATGAAACCAC 58.763 33.333 0.00 0.00 43.58 4.16
516 519 8.335532 ACAATAGATCGAAGAAAATGAAACCA 57.664 30.769 0.00 0.00 43.58 3.67
517 520 9.704098 GTACAATAGATCGAAGAAAATGAAACC 57.296 33.333 0.00 0.00 43.58 3.27
518 521 9.409949 CGTACAATAGATCGAAGAAAATGAAAC 57.590 33.333 0.00 0.00 43.58 2.78
519 522 8.600625 CCGTACAATAGATCGAAGAAAATGAAA 58.399 33.333 0.00 0.00 43.58 2.69
520 523 7.254319 GCCGTACAATAGATCGAAGAAAATGAA 60.254 37.037 0.00 0.00 43.58 2.57
521 524 6.200286 GCCGTACAATAGATCGAAGAAAATGA 59.800 38.462 0.00 0.00 43.58 2.57
522 525 6.355638 GCCGTACAATAGATCGAAGAAAATG 58.644 40.000 0.00 0.00 43.58 2.32
523 526 5.465724 GGCCGTACAATAGATCGAAGAAAAT 59.534 40.000 0.00 0.00 43.58 1.82
524 527 4.807304 GGCCGTACAATAGATCGAAGAAAA 59.193 41.667 0.00 0.00 43.58 2.29
525 528 4.098960 AGGCCGTACAATAGATCGAAGAAA 59.901 41.667 0.00 0.00 43.58 2.52
526 529 3.635373 AGGCCGTACAATAGATCGAAGAA 59.365 43.478 0.00 0.00 43.58 2.52
527 530 3.220110 AGGCCGTACAATAGATCGAAGA 58.780 45.455 0.00 0.00 45.75 2.87
528 531 3.644884 AGGCCGTACAATAGATCGAAG 57.355 47.619 0.00 0.00 0.00 3.79
529 532 4.116961 CAAAGGCCGTACAATAGATCGAA 58.883 43.478 0.00 0.00 0.00 3.71
530 533 3.491964 CCAAAGGCCGTACAATAGATCGA 60.492 47.826 0.00 0.00 0.00 3.59
531 534 2.800544 CCAAAGGCCGTACAATAGATCG 59.199 50.000 0.00 0.00 0.00 3.69
532 535 3.805207 ACCAAAGGCCGTACAATAGATC 58.195 45.455 0.00 0.00 0.00 2.75
533 536 3.199071 TGACCAAAGGCCGTACAATAGAT 59.801 43.478 0.00 0.00 0.00 1.98
534 537 2.568062 TGACCAAAGGCCGTACAATAGA 59.432 45.455 0.00 0.00 0.00 1.98
535 538 2.980568 TGACCAAAGGCCGTACAATAG 58.019 47.619 0.00 0.00 0.00 1.73
536 539 3.420300 TTGACCAAAGGCCGTACAATA 57.580 42.857 0.00 0.00 0.00 1.90
537 540 2.279935 TTGACCAAAGGCCGTACAAT 57.720 45.000 0.00 0.00 0.00 2.71
538 541 2.156098 GATTGACCAAAGGCCGTACAA 58.844 47.619 0.00 0.06 0.00 2.41
539 542 1.072489 TGATTGACCAAAGGCCGTACA 59.928 47.619 0.00 0.00 0.00 2.90
540 543 1.737793 CTGATTGACCAAAGGCCGTAC 59.262 52.381 0.00 0.00 0.00 3.67
541 544 1.349688 ACTGATTGACCAAAGGCCGTA 59.650 47.619 0.00 0.00 0.00 4.02
542 545 0.110486 ACTGATTGACCAAAGGCCGT 59.890 50.000 0.00 0.00 0.00 5.68
543 546 2.107950 TACTGATTGACCAAAGGCCG 57.892 50.000 0.00 0.00 0.00 6.13
544 547 3.826729 ACTTTACTGATTGACCAAAGGCC 59.173 43.478 0.00 0.00 31.89 5.19
545 548 5.221244 ACAACTTTACTGATTGACCAAAGGC 60.221 40.000 0.00 0.00 31.89 4.35
546 549 6.391227 ACAACTTTACTGATTGACCAAAGG 57.609 37.500 0.00 0.00 31.89 3.11
547 550 8.783093 TGATACAACTTTACTGATTGACCAAAG 58.217 33.333 0.00 0.00 33.45 2.77
548 551 8.684386 TGATACAACTTTACTGATTGACCAAA 57.316 30.769 0.00 0.00 0.00 3.28
549 552 8.862325 ATGATACAACTTTACTGATTGACCAA 57.138 30.769 0.00 0.00 0.00 3.67
550 553 8.100164 TGATGATACAACTTTACTGATTGACCA 58.900 33.333 0.00 0.00 0.00 4.02
551 554 8.492673 TGATGATACAACTTTACTGATTGACC 57.507 34.615 0.00 0.00 0.00 4.02
590 593 9.320295 TGTTGGATGGTCTTTAAAATTATTCCT 57.680 29.630 0.00 0.00 0.00 3.36
591 594 9.586435 CTGTTGGATGGTCTTTAAAATTATTCC 57.414 33.333 0.00 0.00 0.00 3.01
592 595 9.586435 CCTGTTGGATGGTCTTTAAAATTATTC 57.414 33.333 0.00 0.00 34.57 1.75
593 596 9.100197 ACCTGTTGGATGGTCTTTAAAATTATT 57.900 29.630 0.00 0.00 37.04 1.40
594 597 8.664669 ACCTGTTGGATGGTCTTTAAAATTAT 57.335 30.769 0.00 0.00 37.04 1.28
595 598 8.117813 GACCTGTTGGATGGTCTTTAAAATTA 57.882 34.615 5.05 0.00 46.65 1.40
596 599 6.993079 GACCTGTTGGATGGTCTTTAAAATT 58.007 36.000 5.05 0.00 46.65 1.82
597 600 6.590234 GACCTGTTGGATGGTCTTTAAAAT 57.410 37.500 5.05 0.00 46.65 1.82
606 609 5.393866 ACTTTATTTGACCTGTTGGATGGT 58.606 37.500 0.00 0.00 39.60 3.55
607 610 5.982890 ACTTTATTTGACCTGTTGGATGG 57.017 39.130 0.00 0.00 37.04 3.51
608 611 9.927668 ATTTTACTTTATTTGACCTGTTGGATG 57.072 29.630 0.00 0.00 37.04 3.51
609 612 9.927668 CATTTTACTTTATTTGACCTGTTGGAT 57.072 29.630 0.00 0.00 37.04 3.41
610 613 8.919145 ACATTTTACTTTATTTGACCTGTTGGA 58.081 29.630 0.00 0.00 37.04 3.53
638 641 9.430623 CGAAATTTATGGACCCAAACTTAAATT 57.569 29.630 10.19 10.19 37.96 1.82
639 642 8.808092 TCGAAATTTATGGACCCAAACTTAAAT 58.192 29.630 0.00 0.00 31.97 1.40
640 643 8.179509 TCGAAATTTATGGACCCAAACTTAAA 57.820 30.769 0.00 0.00 0.00 1.52
641 644 7.762588 TCGAAATTTATGGACCCAAACTTAA 57.237 32.000 0.00 0.00 0.00 1.85
642 645 7.948034 ATCGAAATTTATGGACCCAAACTTA 57.052 32.000 0.00 0.00 0.00 2.24
643 646 6.850752 ATCGAAATTTATGGACCCAAACTT 57.149 33.333 0.00 0.00 0.00 2.66
644 647 8.533569 AATATCGAAATTTATGGACCCAAACT 57.466 30.769 0.00 0.00 0.00 2.66
695 698 9.478768 GGTTCCTAAAATTGTTTTTATTCGGAA 57.521 29.630 0.00 0.00 37.10 4.30
696 699 7.808856 CGGTTCCTAAAATTGTTTTTATTCGGA 59.191 33.333 0.00 0.00 36.85 4.55
697 700 7.062488 CCGGTTCCTAAAATTGTTTTTATTCGG 59.938 37.037 0.00 0.00 36.85 4.30
698 701 7.595875 ACCGGTTCCTAAAATTGTTTTTATTCG 59.404 33.333 0.00 0.00 36.85 3.34
699 702 8.821147 ACCGGTTCCTAAAATTGTTTTTATTC 57.179 30.769 0.00 0.00 36.85 1.75
700 703 9.263538 GAACCGGTTCCTAAAATTGTTTTTATT 57.736 29.630 33.02 0.00 36.85 1.40
701 704 8.422566 TGAACCGGTTCCTAAAATTGTTTTTAT 58.577 29.630 37.66 3.10 38.77 1.40
702 705 7.779073 TGAACCGGTTCCTAAAATTGTTTTTA 58.221 30.769 37.66 15.46 38.77 1.52
703 706 6.641474 TGAACCGGTTCCTAAAATTGTTTTT 58.359 32.000 37.66 3.85 38.77 1.94
704 707 6.127281 ACTGAACCGGTTCCTAAAATTGTTTT 60.127 34.615 37.66 4.28 38.77 2.43
705 708 5.361571 ACTGAACCGGTTCCTAAAATTGTTT 59.638 36.000 37.66 5.01 38.77 2.83
706 709 4.891168 ACTGAACCGGTTCCTAAAATTGTT 59.109 37.500 37.66 5.50 38.77 2.83
707 710 4.466827 ACTGAACCGGTTCCTAAAATTGT 58.533 39.130 37.66 21.51 38.77 2.71
708 711 6.563222 TTACTGAACCGGTTCCTAAAATTG 57.437 37.500 37.66 20.99 38.77 2.32
709 712 7.770366 ATTTACTGAACCGGTTCCTAAAATT 57.230 32.000 37.66 22.43 38.77 1.82
710 713 7.770366 AATTTACTGAACCGGTTCCTAAAAT 57.230 32.000 37.66 31.84 38.77 1.82
711 714 7.585579 AAATTTACTGAACCGGTTCCTAAAA 57.414 32.000 37.66 31.28 38.77 1.52
712 715 7.284944 TCAAAATTTACTGAACCGGTTCCTAAA 59.715 33.333 37.66 33.41 38.77 1.85
713 716 6.771749 TCAAAATTTACTGAACCGGTTCCTAA 59.228 34.615 37.66 28.96 38.77 2.69
714 717 6.205270 GTCAAAATTTACTGAACCGGTTCCTA 59.795 38.462 37.66 25.71 38.77 2.94
715 718 5.009310 GTCAAAATTTACTGAACCGGTTCCT 59.991 40.000 37.66 26.66 38.77 3.36
716 719 5.217393 GTCAAAATTTACTGAACCGGTTCC 58.783 41.667 37.66 23.13 38.77 3.62
717 720 5.217393 GGTCAAAATTTACTGAACCGGTTC 58.783 41.667 35.49 35.49 39.91 3.62
718 721 4.261280 CGGTCAAAATTTACTGAACCGGTT 60.261 41.667 22.50 22.50 34.97 4.44
719 722 3.251487 CGGTCAAAATTTACTGAACCGGT 59.749 43.478 0.00 0.00 34.97 5.28
720 723 3.251487 ACGGTCAAAATTTACTGAACCGG 59.749 43.478 22.98 0.00 38.96 5.28
721 724 4.215965 CACGGTCAAAATTTACTGAACCG 58.784 43.478 20.34 20.34 39.74 4.44
722 725 3.978855 GCACGGTCAAAATTTACTGAACC 59.021 43.478 6.88 4.84 0.00 3.62
723 726 4.439776 GTGCACGGTCAAAATTTACTGAAC 59.560 41.667 0.00 2.90 0.00 3.18
724 727 4.498345 GGTGCACGGTCAAAATTTACTGAA 60.498 41.667 11.45 0.00 0.00 3.02
725 728 3.003897 GGTGCACGGTCAAAATTTACTGA 59.996 43.478 11.45 0.00 0.00 3.41
726 729 3.243234 TGGTGCACGGTCAAAATTTACTG 60.243 43.478 11.45 0.00 0.00 2.74
727 730 2.952978 TGGTGCACGGTCAAAATTTACT 59.047 40.909 11.45 0.00 0.00 2.24
728 731 3.357166 TGGTGCACGGTCAAAATTTAC 57.643 42.857 11.45 0.00 0.00 2.01
729 732 4.386867 TTTGGTGCACGGTCAAAATTTA 57.613 36.364 11.45 0.00 0.00 1.40
730 733 2.969628 TTGGTGCACGGTCAAAATTT 57.030 40.000 11.45 0.00 0.00 1.82
731 734 2.969628 TTTGGTGCACGGTCAAAATT 57.030 40.000 11.45 0.00 0.00 1.82
732 735 3.467374 AATTTGGTGCACGGTCAAAAT 57.533 38.095 19.20 11.32 34.63 1.82
733 736 2.969628 AATTTGGTGCACGGTCAAAA 57.030 40.000 19.20 11.51 34.63 2.44
734 737 5.707242 TTATAATTTGGTGCACGGTCAAA 57.293 34.783 18.09 18.09 35.30 2.69
735 738 5.650266 AGATTATAATTTGGTGCACGGTCAA 59.350 36.000 11.45 6.84 0.00 3.18
736 739 5.189928 AGATTATAATTTGGTGCACGGTCA 58.810 37.500 11.45 0.00 0.00 4.02
737 740 5.295787 TGAGATTATAATTTGGTGCACGGTC 59.704 40.000 11.45 0.00 0.00 4.79
738 741 5.189928 TGAGATTATAATTTGGTGCACGGT 58.810 37.500 11.45 0.00 0.00 4.83
739 742 5.749596 TGAGATTATAATTTGGTGCACGG 57.250 39.130 11.45 0.00 0.00 4.94
740 743 8.053411 CAAATGAGATTATAATTTGGTGCACG 57.947 34.615 11.45 0.00 37.55 5.34
747 750 8.306761 GGGTAGGCCAAATGAGATTATAATTTG 58.693 37.037 5.01 0.94 39.77 2.32
748 751 8.010105 TGGGTAGGCCAAATGAGATTATAATTT 58.990 33.333 5.01 0.00 36.17 1.82
749 752 7.534852 TGGGTAGGCCAAATGAGATTATAATT 58.465 34.615 5.01 0.00 36.17 1.40
750 753 7.102518 TGGGTAGGCCAAATGAGATTATAAT 57.897 36.000 5.01 0.00 36.17 1.28
751 754 6.523035 TGGGTAGGCCAAATGAGATTATAA 57.477 37.500 5.01 0.00 36.17 0.98
752 755 6.718593 ATGGGTAGGCCAAATGAGATTATA 57.281 37.500 5.01 0.00 36.17 0.98
753 756 5.605540 ATGGGTAGGCCAAATGAGATTAT 57.394 39.130 5.01 0.00 36.17 1.28
754 757 5.514834 GCTATGGGTAGGCCAAATGAGATTA 60.515 44.000 5.01 0.00 36.17 1.75
755 758 3.979501 ATGGGTAGGCCAAATGAGATT 57.020 42.857 5.01 0.00 36.17 2.40
756 759 3.245052 GCTATGGGTAGGCCAAATGAGAT 60.245 47.826 5.01 0.00 36.17 2.75
757 760 2.106511 GCTATGGGTAGGCCAAATGAGA 59.893 50.000 5.01 0.00 36.17 3.27
758 761 2.508526 GCTATGGGTAGGCCAAATGAG 58.491 52.381 5.01 0.00 36.17 2.90
759 762 1.144913 GGCTATGGGTAGGCCAAATGA 59.855 52.381 5.01 0.00 45.19 2.57
760 763 1.620822 GGCTATGGGTAGGCCAAATG 58.379 55.000 5.01 0.00 45.19 2.32
766 769 4.331067 GGCCGGCTATGGGTAGGC 62.331 72.222 28.56 0.41 46.85 3.93
767 770 3.637273 GGGCCGGCTATGGGTAGG 61.637 72.222 28.56 0.00 0.00 3.18
768 771 2.526873 AGGGCCGGCTATGGGTAG 60.527 66.667 28.56 0.00 0.00 3.18
769 772 2.525877 GAGGGCCGGCTATGGGTA 60.526 66.667 28.56 0.00 0.00 3.69
770 773 4.815973 TGAGGGCCGGCTATGGGT 62.816 66.667 28.56 4.28 0.00 4.51
771 774 3.252284 ATGAGGGCCGGCTATGGG 61.252 66.667 28.56 0.00 0.00 4.00
772 775 2.348998 GATGAGGGCCGGCTATGG 59.651 66.667 28.56 0.00 0.00 2.74
773 776 1.302033 GTGATGAGGGCCGGCTATG 60.302 63.158 28.56 0.00 0.00 2.23
774 777 1.130054 ATGTGATGAGGGCCGGCTAT 61.130 55.000 28.56 15.70 0.00 2.97
775 778 1.758440 GATGTGATGAGGGCCGGCTA 61.758 60.000 28.56 11.10 0.00 3.93
776 779 3.092511 ATGTGATGAGGGCCGGCT 61.093 61.111 28.56 7.30 0.00 5.52
777 780 2.592861 GATGTGATGAGGGCCGGC 60.593 66.667 21.18 21.18 0.00 6.13
778 781 2.111878 GGATGTGATGAGGGCCGG 59.888 66.667 0.00 0.00 0.00 6.13
779 782 1.070445 GAGGATGTGATGAGGGCCG 59.930 63.158 0.00 0.00 0.00 6.13
780 783 0.179034 GTGAGGATGTGATGAGGGCC 60.179 60.000 0.00 0.00 0.00 5.80
781 784 0.543277 TGTGAGGATGTGATGAGGGC 59.457 55.000 0.00 0.00 0.00 5.19
782 785 3.354948 TTTGTGAGGATGTGATGAGGG 57.645 47.619 0.00 0.00 0.00 4.30
783 786 6.544931 ACATATTTTGTGAGGATGTGATGAGG 59.455 38.462 0.00 0.00 37.11 3.86
784 787 7.563888 ACATATTTTGTGAGGATGTGATGAG 57.436 36.000 0.00 0.00 37.11 2.90
807 810 1.034838 TTGGTTCACTGTGTGGGCAC 61.035 55.000 7.79 0.00 45.44 5.01
808 811 0.751277 CTTGGTTCACTGTGTGGGCA 60.751 55.000 7.79 0.00 33.87 5.36
809 812 1.455383 CCTTGGTTCACTGTGTGGGC 61.455 60.000 7.79 0.00 33.87 5.36
810 813 1.455383 GCCTTGGTTCACTGTGTGGG 61.455 60.000 7.79 3.95 33.87 4.61
811 814 1.455383 GGCCTTGGTTCACTGTGTGG 61.455 60.000 7.79 3.62 33.87 4.17
812 815 1.455383 GGGCCTTGGTTCACTGTGTG 61.455 60.000 0.84 0.00 34.45 3.82
813 816 1.152756 GGGCCTTGGTTCACTGTGT 60.153 57.895 0.84 0.00 0.00 3.72
814 817 0.468029 AAGGGCCTTGGTTCACTGTG 60.468 55.000 20.19 0.17 0.00 3.66
815 818 0.178990 GAAGGGCCTTGGTTCACTGT 60.179 55.000 26.47 0.00 0.00 3.55
816 819 0.111253 AGAAGGGCCTTGGTTCACTG 59.889 55.000 26.47 0.00 0.00 3.66
817 820 1.630878 CTAGAAGGGCCTTGGTTCACT 59.369 52.381 26.47 15.59 0.00 3.41
818 821 1.628846 TCTAGAAGGGCCTTGGTTCAC 59.371 52.381 26.47 8.01 0.00 3.18
819 822 1.628846 GTCTAGAAGGGCCTTGGTTCA 59.371 52.381 26.47 0.00 0.00 3.18
820 823 1.405661 CGTCTAGAAGGGCCTTGGTTC 60.406 57.143 26.47 9.50 0.00 3.62
821 824 0.613777 CGTCTAGAAGGGCCTTGGTT 59.386 55.000 26.47 11.53 0.00 3.67
822 825 0.544595 ACGTCTAGAAGGGCCTTGGT 60.545 55.000 26.47 13.35 0.00 3.67
823 826 0.108138 CACGTCTAGAAGGGCCTTGG 60.108 60.000 26.47 13.46 0.00 3.61
824 827 0.608640 ACACGTCTAGAAGGGCCTTG 59.391 55.000 26.47 9.90 0.00 3.61
825 828 1.349067 AACACGTCTAGAAGGGCCTT 58.651 50.000 21.09 21.09 0.00 4.35
826 829 1.349067 AAACACGTCTAGAAGGGCCT 58.651 50.000 7.93 0.00 0.00 5.19
827 830 2.180432 AAAACACGTCTAGAAGGGCC 57.820 50.000 7.93 0.00 0.00 5.80
828 831 2.876550 ACAAAAACACGTCTAGAAGGGC 59.123 45.455 7.93 0.00 0.00 5.19
829 832 5.296035 AGAAACAAAAACACGTCTAGAAGGG 59.704 40.000 6.36 6.36 0.00 3.95
830 833 6.036735 TCAGAAACAAAAACACGTCTAGAAGG 59.963 38.462 10.53 0.68 0.00 3.46
831 834 7.000575 TCAGAAACAAAAACACGTCTAGAAG 57.999 36.000 3.94 3.94 0.00 2.85
832 835 6.971527 TCAGAAACAAAAACACGTCTAGAA 57.028 33.333 0.00 0.00 0.00 2.10
833 836 6.971527 TTCAGAAACAAAAACACGTCTAGA 57.028 33.333 0.00 0.00 0.00 2.43
834 837 8.442605 TTTTTCAGAAACAAAAACACGTCTAG 57.557 30.769 0.00 0.00 29.66 2.43
835 838 7.539366 CCTTTTTCAGAAACAAAAACACGTCTA 59.461 33.333 0.00 0.00 31.11 2.59
836 839 6.364976 CCTTTTTCAGAAACAAAAACACGTCT 59.635 34.615 0.00 0.00 31.11 4.18
837 840 6.521898 CCTTTTTCAGAAACAAAAACACGTC 58.478 36.000 0.00 0.00 31.11 4.34
838 841 5.107259 GCCTTTTTCAGAAACAAAAACACGT 60.107 36.000 0.00 0.00 31.11 4.49
839 842 5.107298 TGCCTTTTTCAGAAACAAAAACACG 60.107 36.000 0.00 0.00 31.11 4.49
840 843 6.234723 TGCCTTTTTCAGAAACAAAAACAC 57.765 33.333 0.00 0.00 31.11 3.32
841 844 6.652481 TCATGCCTTTTTCAGAAACAAAAACA 59.348 30.769 0.00 0.00 31.11 2.83
842 845 7.071014 TCATGCCTTTTTCAGAAACAAAAAC 57.929 32.000 0.00 0.00 31.11 2.43
843 846 6.315891 CCTCATGCCTTTTTCAGAAACAAAAA 59.684 34.615 0.00 0.00 32.93 1.94
844 847 5.816777 CCTCATGCCTTTTTCAGAAACAAAA 59.183 36.000 0.00 0.00 0.00 2.44
845 848 5.104982 ACCTCATGCCTTTTTCAGAAACAAA 60.105 36.000 0.00 0.00 0.00 2.83
846 849 4.405358 ACCTCATGCCTTTTTCAGAAACAA 59.595 37.500 0.00 0.00 0.00 2.83
847 850 3.960102 ACCTCATGCCTTTTTCAGAAACA 59.040 39.130 0.00 0.00 0.00 2.83
848 851 4.037923 TGACCTCATGCCTTTTTCAGAAAC 59.962 41.667 0.00 0.00 0.00 2.78
849 852 4.037923 GTGACCTCATGCCTTTTTCAGAAA 59.962 41.667 0.00 0.00 0.00 2.52
850 853 3.569701 GTGACCTCATGCCTTTTTCAGAA 59.430 43.478 0.00 0.00 0.00 3.02
851 854 3.149196 GTGACCTCATGCCTTTTTCAGA 58.851 45.455 0.00 0.00 0.00 3.27
852 855 2.095567 CGTGACCTCATGCCTTTTTCAG 60.096 50.000 0.00 0.00 0.00 3.02
853 856 1.879380 CGTGACCTCATGCCTTTTTCA 59.121 47.619 0.00 0.00 0.00 2.69
854 857 1.880027 ACGTGACCTCATGCCTTTTTC 59.120 47.619 0.00 0.00 36.36 2.29
855 858 1.608590 CACGTGACCTCATGCCTTTTT 59.391 47.619 10.90 0.00 36.36 1.94
856 859 1.202758 TCACGTGACCTCATGCCTTTT 60.203 47.619 15.76 0.00 36.36 2.27
857 860 0.396435 TCACGTGACCTCATGCCTTT 59.604 50.000 15.76 0.00 36.36 3.11
858 861 0.396435 TTCACGTGACCTCATGCCTT 59.604 50.000 19.90 0.00 36.36 4.35
859 862 0.320771 GTTCACGTGACCTCATGCCT 60.321 55.000 19.90 0.00 36.36 4.75
860 863 0.602638 TGTTCACGTGACCTCATGCC 60.603 55.000 19.90 0.00 36.36 4.40
861 864 1.129251 CATGTTCACGTGACCTCATGC 59.871 52.381 28.06 13.06 36.36 4.06
862 865 1.129251 GCATGTTCACGTGACCTCATG 59.871 52.381 31.26 31.26 38.76 3.07
863 866 1.442769 GCATGTTCACGTGACCTCAT 58.557 50.000 19.90 18.84 34.90 2.90
864 867 0.602638 GGCATGTTCACGTGACCTCA 60.603 55.000 19.90 17.44 34.83 3.86
865 868 2.162716 GGCATGTTCACGTGACCTC 58.837 57.895 19.90 12.26 34.83 3.85
866 869 4.379174 GGCATGTTCACGTGACCT 57.621 55.556 19.90 2.51 34.83 3.85
868 871 0.881118 AATGGGCATGTTCACGTGAC 59.119 50.000 19.90 13.95 40.16 3.67
869 872 1.164411 GAATGGGCATGTTCACGTGA 58.836 50.000 15.76 15.76 34.90 4.35
870 873 0.880441 TGAATGGGCATGTTCACGTG 59.120 50.000 9.94 9.94 36.01 4.49
871 874 1.838112 ATGAATGGGCATGTTCACGT 58.162 45.000 0.00 0.00 37.19 4.49
872 875 2.164017 TGAATGAATGGGCATGTTCACG 59.836 45.455 0.00 0.00 37.19 4.35
873 876 3.872511 TGAATGAATGGGCATGTTCAC 57.127 42.857 0.00 0.00 37.19 3.18
874 877 4.322877 CCTTTGAATGAATGGGCATGTTCA 60.323 41.667 0.00 0.00 38.57 3.18
875 878 4.186159 CCTTTGAATGAATGGGCATGTTC 58.814 43.478 0.00 0.00 0.00 3.18
876 879 3.054948 CCCTTTGAATGAATGGGCATGTT 60.055 43.478 0.00 0.00 41.07 2.71
877 880 2.502538 CCCTTTGAATGAATGGGCATGT 59.497 45.455 0.00 0.00 41.07 3.21
878 881 3.188159 CCCTTTGAATGAATGGGCATG 57.812 47.619 0.00 0.00 41.07 4.06
883 886 1.758862 GAGGGCCCTTTGAATGAATGG 59.241 52.381 29.39 0.00 0.00 3.16
884 887 1.758862 GGAGGGCCCTTTGAATGAATG 59.241 52.381 29.39 0.00 0.00 2.67
885 888 1.648037 AGGAGGGCCCTTTGAATGAAT 59.352 47.619 29.39 0.00 44.85 2.57
886 889 1.084018 AGGAGGGCCCTTTGAATGAA 58.916 50.000 29.39 0.00 44.85 2.57
887 890 2.805164 AGGAGGGCCCTTTGAATGA 58.195 52.632 29.39 0.00 44.85 2.57
897 900 3.653122 TAGGGTTGGGAGGAGGGCC 62.653 68.421 0.00 0.00 0.00 5.80
898 901 2.042261 TAGGGTTGGGAGGAGGGC 59.958 66.667 0.00 0.00 0.00 5.19
942 958 1.375523 GCGGCGAGGAAGGAAAGAA 60.376 57.895 12.98 0.00 0.00 2.52
1094 1131 2.279502 TAGATCCACCACTCGCACGC 62.280 60.000 0.00 0.00 0.00 5.34
1101 1138 2.435693 GGGCGCTAGATCCACCACT 61.436 63.158 7.64 0.00 0.00 4.00
1256 1361 1.227556 CCAAACTAGATCCCCGCCG 60.228 63.158 0.00 0.00 0.00 6.46
1573 1706 1.021202 CATTGACACCACCACAACGT 58.979 50.000 0.00 0.00 0.00 3.99
1585 1718 1.918293 AGGTCCTCCGCCATTGACA 60.918 57.895 0.00 0.00 39.05 3.58
1673 1893 4.033009 TGGTCCATCTTCAGAGCAGATTA 58.967 43.478 0.00 0.00 35.69 1.75
1772 2048 1.867363 ACATCTAAAGTCGGAGGCCT 58.133 50.000 3.86 3.86 0.00 5.19
1834 2110 8.373981 CACTACTCCTATCCAAATGATGAAGAT 58.626 37.037 0.00 0.00 34.76 2.40
1835 2111 7.565029 TCACTACTCCTATCCAAATGATGAAGA 59.435 37.037 0.00 0.00 34.76 2.87
1874 2150 0.036732 TATGCCTGAATCCGCCATCC 59.963 55.000 0.00 0.00 0.00 3.51
1957 2390 4.315264 ACCCCCGGCCTTTGCATT 62.315 61.111 0.00 0.00 40.13 3.56
1993 2450 9.575868 TCCCTCTTATATATCATATCTCGGTTC 57.424 37.037 0.00 0.00 0.00 3.62
2004 2461 9.944079 AGCTAAGCTATTCCCTCTTATATATCA 57.056 33.333 0.00 0.00 36.99 2.15
2060 2536 1.795525 CGTCGTCGAACATGCATCTCT 60.796 52.381 0.00 0.00 39.71 3.10
2078 2554 5.048083 TGCTCAATAAATCTTTTCCTTGCGT 60.048 36.000 0.00 0.00 0.00 5.24
2087 2563 9.167311 ACTTCGTATCTTGCTCAATAAATCTTT 57.833 29.630 0.00 0.00 0.00 2.52
2097 2573 7.854422 CGTAATACTAACTTCGTATCTTGCTCA 59.146 37.037 0.00 0.00 0.00 4.26
2136 2612 1.200103 GATCGATCGTGCGTGCATG 59.800 57.895 15.94 7.74 0.00 4.06
2171 2647 5.746361 TGGAAACACGTCCATGAGGAATTAA 60.746 40.000 0.00 0.00 42.97 1.40
2204 2680 3.073650 GGATATCCTGACCTGGATTGCTT 59.926 47.826 14.97 0.00 43.79 3.91
2212 2688 3.344515 CATGCATGGATATCCTGACCTG 58.655 50.000 22.35 12.32 36.82 4.00
2213 2689 2.290768 GCATGCATGGATATCCTGACCT 60.291 50.000 27.34 2.42 36.82 3.85
2214 2690 2.089980 GCATGCATGGATATCCTGACC 58.910 52.381 27.34 8.90 36.82 4.02
2215 2691 2.786777 TGCATGCATGGATATCCTGAC 58.213 47.619 27.34 11.61 36.82 3.51
2216 2692 3.732048 ATGCATGCATGGATATCCTGA 57.268 42.857 31.74 3.65 37.06 3.86
2232 2708 4.402528 AGCACCGGCCGTAATGCA 62.403 61.111 34.03 0.00 42.56 3.96
2242 2718 1.501741 CCACGAAATTGAGCACCGG 59.498 57.895 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.