Multiple sequence alignment - TraesCS3A01G037100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G037100 chr3A 100.000 2842 0 0 1 2842 20130204 20133045 0.000000e+00 5249.0
1 TraesCS3A01G037100 chr3A 100.000 2696 0 0 3076 5771 20133279 20135974 0.000000e+00 4979.0
2 TraesCS3A01G037100 chr3A 74.943 435 83 13 355 777 496047553 496047133 5.940000e-40 176.0
3 TraesCS3A01G037100 chr3D 94.874 2731 93 20 3076 5771 16317472 16314754 0.000000e+00 4224.0
4 TraesCS3A01G037100 chr3D 89.934 1371 77 24 877 2223 16319530 16318197 0.000000e+00 1711.0
5 TraesCS3A01G037100 chr3D 92.441 635 33 5 2212 2842 16318122 16317499 0.000000e+00 893.0
6 TraesCS3A01G037100 chr3D 76.936 581 100 21 208 771 485230625 485230062 3.380000e-77 300.0
7 TraesCS3A01G037100 chr3D 76.923 598 87 20 195 752 598854916 598854330 5.660000e-75 292.0
8 TraesCS3A01G037100 chr3D 78.251 446 74 12 352 781 7577178 7577616 1.230000e-66 265.0
9 TraesCS3A01G037100 chr3D 81.419 296 46 6 353 640 121728512 121728806 3.480000e-57 233.0
10 TraesCS3A01G037100 chr3D 90.698 43 2 1 3570 3612 607367746 607367706 8.080000e-04 56.5
11 TraesCS3A01G037100 chr3B 92.226 2727 150 30 3076 5768 23783816 23781118 0.000000e+00 3805.0
12 TraesCS3A01G037100 chr3B 89.960 1753 96 38 877 2618 23787167 23785484 0.000000e+00 2189.0
13 TraesCS3A01G037100 chr3B 78.758 612 85 17 197 771 794362015 794361412 9.140000e-98 368.0
14 TraesCS3A01G037100 chr3B 94.064 219 12 1 2610 2827 23784328 23784110 1.200000e-86 331.0
15 TraesCS3A01G037100 chr3B 77.205 601 88 22 195 776 26575778 26575208 7.260000e-79 305.0
16 TraesCS3A01G037100 chr2D 79.934 603 73 20 186 751 429082281 429081690 3.240000e-107 399.0
17 TraesCS3A01G037100 chr2D 92.233 103 8 0 2170 2272 445894983 445894881 4.660000e-31 147.0
18 TraesCS3A01G037100 chr6D 79.684 443 73 8 352 777 388207605 388207163 2.610000e-78 303.0
19 TraesCS3A01G037100 chr6D 74.860 358 64 17 414 753 139381839 139381490 7.800000e-29 139.0
20 TraesCS3A01G037100 chr4B 76.823 617 94 14 195 771 606635070 606635677 9.400000e-78 302.0
21 TraesCS3A01G037100 chr4D 76.452 620 99 22 195 775 745148 745759 5.660000e-75 292.0
22 TraesCS3A01G037100 chr4D 78.697 399 61 13 355 736 5921579 5921188 1.610000e-60 244.0
23 TraesCS3A01G037100 chr4D 92.079 101 8 0 2169 2269 494042368 494042468 6.030000e-30 143.0
24 TraesCS3A01G037100 chr1A 80.299 401 62 11 378 768 312724013 312723620 2.630000e-73 287.0
25 TraesCS3A01G037100 chr1A 77.477 222 29 13 568 770 343636055 343636274 4.730000e-21 113.0
26 TraesCS3A01G037100 chr5B 76.953 512 78 17 278 752 332931938 332932446 7.420000e-64 255.0
27 TraesCS3A01G037100 chr5B 76.876 493 76 20 202 668 496814519 496814039 1.610000e-60 244.0
28 TraesCS3A01G037100 chr5B 75.439 171 24 12 196 360 432234120 432234278 3.730000e-07 67.6
29 TraesCS3A01G037100 chr7B 76.998 413 73 12 383 777 528302069 528301661 3.500000e-52 217.0
30 TraesCS3A01G037100 chr7B 87.302 126 10 6 2160 2282 589348427 589348305 7.800000e-29 139.0
31 TraesCS3A01G037100 chr4A 76.256 438 86 9 354 775 32686134 32686569 3.500000e-52 217.0
32 TraesCS3A01G037100 chr4A 92.661 109 5 3 2162 2270 477058551 477058656 2.780000e-33 154.0
33 TraesCS3A01G037100 chr4A 82.979 141 21 3 632 771 687284564 687284702 2.180000e-24 124.0
34 TraesCS3A01G037100 chr1B 75.128 390 80 11 392 770 343952030 343952413 3.580000e-37 167.0
35 TraesCS3A01G037100 chr5D 94.000 100 6 0 2171 2270 521371579 521371678 1.000000e-32 152.0
36 TraesCS3A01G037100 chr7A 91.346 104 9 0 2173 2276 511927411 511927308 6.030000e-30 143.0
37 TraesCS3A01G037100 chr2A 89.908 109 10 1 2167 2275 660286876 660286769 7.800000e-29 139.0
38 TraesCS3A01G037100 chr2B 77.473 182 34 4 601 777 494279784 494279605 1.020000e-17 102.0
39 TraesCS3A01G037100 chrUn 94.118 51 3 0 5707 5757 30300967 30301017 1.720000e-10 78.7
40 TraesCS3A01G037100 chr5A 83.117 77 8 3 3093 3164 568464031 568464107 1.340000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G037100 chr3A 20130204 20135974 5770 False 5114.000000 5249 100.000000 1 5771 2 chr3A.!!$F1 5770
1 TraesCS3A01G037100 chr3D 16314754 16319530 4776 True 2276.000000 4224 92.416333 877 5771 3 chr3D.!!$R4 4894
2 TraesCS3A01G037100 chr3D 485230062 485230625 563 True 300.000000 300 76.936000 208 771 1 chr3D.!!$R1 563
3 TraesCS3A01G037100 chr3D 598854330 598854916 586 True 292.000000 292 76.923000 195 752 1 chr3D.!!$R2 557
4 TraesCS3A01G037100 chr3B 23781118 23787167 6049 True 2108.333333 3805 92.083333 877 5768 3 chr3B.!!$R3 4891
5 TraesCS3A01G037100 chr3B 794361412 794362015 603 True 368.000000 368 78.758000 197 771 1 chr3B.!!$R2 574
6 TraesCS3A01G037100 chr3B 26575208 26575778 570 True 305.000000 305 77.205000 195 776 1 chr3B.!!$R1 581
7 TraesCS3A01G037100 chr2D 429081690 429082281 591 True 399.000000 399 79.934000 186 751 1 chr2D.!!$R1 565
8 TraesCS3A01G037100 chr4B 606635070 606635677 607 False 302.000000 302 76.823000 195 771 1 chr4B.!!$F1 576
9 TraesCS3A01G037100 chr4D 745148 745759 611 False 292.000000 292 76.452000 195 775 1 chr4D.!!$F1 580
10 TraesCS3A01G037100 chr5B 332931938 332932446 508 False 255.000000 255 76.953000 278 752 1 chr5B.!!$F1 474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 951 0.467804 TTGCTACCTGTGCAGTGACA 59.532 50.0 0.00 0.00 41.71 3.58 F
1140 1223 0.394899 CCACCTGGGCTTTCTGGATC 60.395 60.0 0.00 0.00 0.00 3.36 F
1336 1425 0.462581 TTTAGATGCCCTGCGAGCAG 60.463 55.0 17.44 17.44 44.90 4.24 F
1795 1905 1.620822 GAAATGCGAAGGCCCCATAT 58.379 50.0 0.00 0.00 38.85 1.78 F
2837 4206 0.757188 AGTGTCGGATCTAGGCCCAG 60.757 60.0 0.00 0.00 0.00 4.45 F
3418 4835 0.916086 TGAGTGTTGGTTGGTGGTCT 59.084 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1892 0.396435 TAGCACATATGGGGCCTTCG 59.604 55.000 7.18 0.0 0.00 3.79 R
2337 2538 1.308998 GGCACAAGCACAACTGTACT 58.691 50.000 0.00 0.0 44.61 2.73 R
2816 4185 1.742768 GGCCTAGATCCGACACTGG 59.257 63.158 0.00 0.0 0.00 4.00 R
3118 4534 1.833934 GCCCAGGCCCCATTGTATG 60.834 63.158 0.00 0.0 34.56 2.39 R
4398 5826 0.943835 CGCTGGTGTCGATGTCAACA 60.944 55.000 0.00 0.0 0.00 3.33 R
5237 6688 0.543277 TAATGCACCCAGGAGCAGAG 59.457 55.000 14.15 0.0 44.08 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.768501 AACTATACAGACATCCTACAAGATGA 57.231 34.615 8.44 0.00 45.43 2.92
28 29 8.768501 ACTATACAGACATCCTACAAGATGAA 57.231 34.615 8.44 0.00 45.43 2.57
29 30 9.373450 ACTATACAGACATCCTACAAGATGAAT 57.627 33.333 8.44 0.00 45.43 2.57
32 33 9.911788 ATACAGACATCCTACAAGATGAATTTT 57.088 29.630 8.44 0.00 45.43 1.82
33 34 8.048534 ACAGACATCCTACAAGATGAATTTTG 57.951 34.615 8.44 0.00 45.43 2.44
34 35 7.884877 ACAGACATCCTACAAGATGAATTTTGA 59.115 33.333 8.44 0.00 45.43 2.69
35 36 8.733458 CAGACATCCTACAAGATGAATTTTGAA 58.267 33.333 8.44 0.00 45.43 2.69
36 37 9.300681 AGACATCCTACAAGATGAATTTTGAAA 57.699 29.630 8.44 0.00 45.43 2.69
57 58 8.702408 TGAAATTTACGAAAATGTTCTACACG 57.298 30.769 0.00 0.00 35.46 4.49
58 59 8.549548 TGAAATTTACGAAAATGTTCTACACGA 58.450 29.630 0.00 0.00 35.46 4.35
59 60 8.928844 AAATTTACGAAAATGTTCTACACGAG 57.071 30.769 0.00 0.00 35.46 4.18
60 61 5.505165 TTACGAAAATGTTCTACACGAGC 57.495 39.130 0.00 0.00 0.00 5.03
61 62 3.650139 ACGAAAATGTTCTACACGAGCT 58.350 40.909 0.00 0.00 0.00 4.09
62 63 4.801891 ACGAAAATGTTCTACACGAGCTA 58.198 39.130 0.00 0.00 0.00 3.32
63 64 5.408356 ACGAAAATGTTCTACACGAGCTAT 58.592 37.500 0.00 0.00 0.00 2.97
64 65 5.515626 ACGAAAATGTTCTACACGAGCTATC 59.484 40.000 0.00 0.00 0.00 2.08
79 80 6.771188 CGAGCTATCGGAAATGTTCTAATT 57.229 37.500 0.00 0.00 45.39 1.40
80 81 6.584954 CGAGCTATCGGAAATGTTCTAATTG 58.415 40.000 0.00 0.00 45.39 2.32
81 82 6.346919 CGAGCTATCGGAAATGTTCTAATTGG 60.347 42.308 0.00 0.00 45.39 3.16
82 83 5.765182 AGCTATCGGAAATGTTCTAATTGGG 59.235 40.000 0.00 0.00 0.00 4.12
83 84 5.531287 GCTATCGGAAATGTTCTAATTGGGT 59.469 40.000 0.00 0.00 0.00 4.51
84 85 6.708949 GCTATCGGAAATGTTCTAATTGGGTA 59.291 38.462 0.00 0.00 0.00 3.69
85 86 6.937436 ATCGGAAATGTTCTAATTGGGTAC 57.063 37.500 0.00 0.00 0.00 3.34
86 87 5.806818 TCGGAAATGTTCTAATTGGGTACA 58.193 37.500 0.00 0.00 0.00 2.90
87 88 6.239396 TCGGAAATGTTCTAATTGGGTACAA 58.761 36.000 0.00 0.00 41.59 2.41
88 89 6.149807 TCGGAAATGTTCTAATTGGGTACAAC 59.850 38.462 0.00 0.00 39.87 3.32
89 90 6.624204 CGGAAATGTTCTAATTGGGTACAACC 60.624 42.308 0.00 0.00 39.87 3.77
90 91 6.209788 GGAAATGTTCTAATTGGGTACAACCA 59.790 38.462 0.00 0.00 41.02 3.67
99 100 3.586470 TGGGTACAACCAAAGATGTGT 57.414 42.857 0.00 0.00 41.02 3.72
100 101 3.904717 TGGGTACAACCAAAGATGTGTT 58.095 40.909 0.00 0.00 41.02 3.32
101 102 3.634448 TGGGTACAACCAAAGATGTGTTG 59.366 43.478 0.00 0.00 41.02 3.33
102 103 6.903977 TTGGGTACAACCAAAGATGTGTTGG 61.904 44.000 0.00 1.65 46.95 3.77
110 111 5.199024 CCAAAGATGTGTTGGTTGATTCA 57.801 39.130 0.00 0.00 40.64 2.57
111 112 5.599732 CCAAAGATGTGTTGGTTGATTCAA 58.400 37.500 0.00 0.00 40.64 2.69
112 113 6.225318 CCAAAGATGTGTTGGTTGATTCAAT 58.775 36.000 1.78 0.00 40.64 2.57
113 114 6.707161 CCAAAGATGTGTTGGTTGATTCAATT 59.293 34.615 1.78 0.00 40.64 2.32
114 115 7.307514 CCAAAGATGTGTTGGTTGATTCAATTG 60.308 37.037 1.78 0.00 40.64 2.32
115 116 6.653526 AGATGTGTTGGTTGATTCAATTGA 57.346 33.333 3.38 3.38 0.00 2.57
116 117 6.684686 AGATGTGTTGGTTGATTCAATTGAG 58.315 36.000 8.41 0.00 0.00 3.02
117 118 5.850557 TGTGTTGGTTGATTCAATTGAGT 57.149 34.783 8.41 5.59 0.00 3.41
118 119 6.951062 TGTGTTGGTTGATTCAATTGAGTA 57.049 33.333 8.41 0.00 0.00 2.59
119 120 6.969366 TGTGTTGGTTGATTCAATTGAGTAG 58.031 36.000 8.41 0.00 0.00 2.57
120 121 6.016360 TGTGTTGGTTGATTCAATTGAGTAGG 60.016 38.462 8.41 0.00 0.00 3.18
121 122 6.016276 GTGTTGGTTGATTCAATTGAGTAGGT 60.016 38.462 8.41 0.00 0.00 3.08
122 123 6.549364 TGTTGGTTGATTCAATTGAGTAGGTT 59.451 34.615 8.41 0.00 0.00 3.50
123 124 6.573664 TGGTTGATTCAATTGAGTAGGTTG 57.426 37.500 8.41 0.00 0.00 3.77
124 125 6.303054 TGGTTGATTCAATTGAGTAGGTTGA 58.697 36.000 8.41 0.00 0.00 3.18
125 126 6.775142 TGGTTGATTCAATTGAGTAGGTTGAA 59.225 34.615 8.41 2.71 43.51 2.69
126 127 7.286546 TGGTTGATTCAATTGAGTAGGTTGAAA 59.713 33.333 8.41 0.00 42.88 2.69
127 128 8.141268 GGTTGATTCAATTGAGTAGGTTGAAAA 58.859 33.333 8.41 0.00 42.88 2.29
128 129 9.696917 GTTGATTCAATTGAGTAGGTTGAAAAT 57.303 29.630 8.41 0.00 42.88 1.82
129 130 9.695526 TTGATTCAATTGAGTAGGTTGAAAATG 57.304 29.630 8.41 0.00 42.88 2.32
130 131 8.306038 TGATTCAATTGAGTAGGTTGAAAATGG 58.694 33.333 8.41 0.00 42.88 3.16
131 132 7.595819 TTCAATTGAGTAGGTTGAAAATGGT 57.404 32.000 8.41 0.00 38.49 3.55
132 133 7.595819 TCAATTGAGTAGGTTGAAAATGGTT 57.404 32.000 3.38 0.00 0.00 3.67
133 134 7.432869 TCAATTGAGTAGGTTGAAAATGGTTG 58.567 34.615 3.38 0.00 0.00 3.77
134 135 6.976934 ATTGAGTAGGTTGAAAATGGTTGT 57.023 33.333 0.00 0.00 0.00 3.32
135 136 8.356657 CAATTGAGTAGGTTGAAAATGGTTGTA 58.643 33.333 0.00 0.00 0.00 2.41
136 137 8.650143 ATTGAGTAGGTTGAAAATGGTTGTAT 57.350 30.769 0.00 0.00 0.00 2.29
137 138 7.447374 TGAGTAGGTTGAAAATGGTTGTATG 57.553 36.000 0.00 0.00 0.00 2.39
138 139 7.227873 TGAGTAGGTTGAAAATGGTTGTATGA 58.772 34.615 0.00 0.00 0.00 2.15
139 140 7.721842 TGAGTAGGTTGAAAATGGTTGTATGAA 59.278 33.333 0.00 0.00 0.00 2.57
140 141 7.882179 AGTAGGTTGAAAATGGTTGTATGAAC 58.118 34.615 0.00 0.00 0.00 3.18
141 142 6.723298 AGGTTGAAAATGGTTGTATGAACA 57.277 33.333 0.00 0.00 0.00 3.18
142 143 6.512297 AGGTTGAAAATGGTTGTATGAACAC 58.488 36.000 0.00 0.00 34.61 3.32
143 144 6.323739 AGGTTGAAAATGGTTGTATGAACACT 59.676 34.615 0.00 0.00 34.61 3.55
144 145 6.983890 GGTTGAAAATGGTTGTATGAACACTT 59.016 34.615 0.00 0.00 34.61 3.16
145 146 8.138712 GGTTGAAAATGGTTGTATGAACACTTA 58.861 33.333 0.00 0.00 34.61 2.24
146 147 9.522804 GTTGAAAATGGTTGTATGAACACTTAA 57.477 29.630 0.00 0.00 34.61 1.85
155 156 9.581099 GGTTGTATGAACACTTAATAATTTGGG 57.419 33.333 0.00 0.00 34.61 4.12
174 175 9.853177 AATTTGGGTAATAAACATGGTTTGAAA 57.147 25.926 0.00 0.00 0.00 2.69
175 176 8.894768 TTTGGGTAATAAACATGGTTTGAAAG 57.105 30.769 0.00 0.00 0.00 2.62
176 177 6.998802 TGGGTAATAAACATGGTTTGAAAGG 58.001 36.000 0.00 0.00 0.00 3.11
177 178 6.782988 TGGGTAATAAACATGGTTTGAAAGGA 59.217 34.615 0.00 0.00 0.00 3.36
178 179 7.290248 TGGGTAATAAACATGGTTTGAAAGGAA 59.710 33.333 0.00 0.00 0.00 3.36
179 180 8.151596 GGGTAATAAACATGGTTTGAAAGGAAA 58.848 33.333 0.00 0.00 0.00 3.13
180 181 9.203421 GGTAATAAACATGGTTTGAAAGGAAAG 57.797 33.333 0.00 0.00 0.00 2.62
181 182 9.974980 GTAATAAACATGGTTTGAAAGGAAAGA 57.025 29.630 0.00 0.00 0.00 2.52
184 185 7.790823 AAACATGGTTTGAAAGGAAAGAATG 57.209 32.000 0.00 0.00 0.00 2.67
185 186 6.729690 ACATGGTTTGAAAGGAAAGAATGA 57.270 33.333 0.00 0.00 0.00 2.57
186 187 6.515832 ACATGGTTTGAAAGGAAAGAATGAC 58.484 36.000 0.00 0.00 0.00 3.06
187 188 5.529581 TGGTTTGAAAGGAAAGAATGACC 57.470 39.130 0.00 0.00 0.00 4.02
188 189 4.959210 TGGTTTGAAAGGAAAGAATGACCA 59.041 37.500 0.00 0.00 0.00 4.02
189 190 5.423610 TGGTTTGAAAGGAAAGAATGACCAA 59.576 36.000 0.00 0.00 31.13 3.67
190 191 6.070538 TGGTTTGAAAGGAAAGAATGACCAAA 60.071 34.615 0.00 0.00 31.13 3.28
191 192 6.821160 GGTTTGAAAGGAAAGAATGACCAAAA 59.179 34.615 0.00 0.00 0.00 2.44
244 246 1.143838 CCGGCGAGACATGGATTCA 59.856 57.895 9.30 0.00 0.00 2.57
321 324 2.300152 CTGGTGTCTTGACTCCTGCTAA 59.700 50.000 18.70 2.37 0.00 3.09
368 408 2.125269 GGCGGCGCTCCTTCTTTA 60.125 61.111 32.30 0.00 0.00 1.85
373 413 1.404315 CGGCGCTCCTTCTTTAAGTCT 60.404 52.381 7.64 0.00 0.00 3.24
392 433 3.513515 GTCTGTCTTCTGGACTCCAATCT 59.486 47.826 0.00 0.00 44.74 2.40
403 444 5.644188 TGGACTCCAATCTTCCTCAAATTT 58.356 37.500 0.00 0.00 0.00 1.82
408 449 5.392995 TCCAATCTTCCTCAAATTTGTCCA 58.607 37.500 17.47 0.00 0.00 4.02
427 468 2.154462 CATTGGGATGGATTAGACGGC 58.846 52.381 0.00 0.00 0.00 5.68
428 469 0.472471 TTGGGATGGATTAGACGGCC 59.528 55.000 0.00 0.00 0.00 6.13
446 487 1.884579 GCCCTCCGACGTAGATTCATA 59.115 52.381 0.00 0.00 0.00 2.15
472 513 1.377229 CTTGGGGCGGTGAGGTTAA 59.623 57.895 0.00 0.00 0.00 2.01
517 559 2.365582 GGCGATATTGGTGTCAGGTTT 58.634 47.619 0.00 0.00 0.00 3.27
548 590 2.074547 TCAAGGATTCAACGACGACC 57.925 50.000 0.00 0.00 0.00 4.79
562 604 0.614979 ACGACCACTATGGCTCCAGT 60.615 55.000 0.00 0.00 42.67 4.00
797 856 4.385358 AAAAAGTCGTTCCTGTGCAATT 57.615 36.364 0.00 0.00 0.00 2.32
798 857 4.385358 AAAAGTCGTTCCTGTGCAATTT 57.615 36.364 0.00 0.00 0.00 1.82
799 858 3.354089 AAGTCGTTCCTGTGCAATTTG 57.646 42.857 0.00 0.00 0.00 2.32
800 859 1.608590 AGTCGTTCCTGTGCAATTTGG 59.391 47.619 0.00 0.00 0.00 3.28
801 860 1.336755 GTCGTTCCTGTGCAATTTGGT 59.663 47.619 0.00 0.00 0.00 3.67
802 861 2.550606 GTCGTTCCTGTGCAATTTGGTA 59.449 45.455 0.00 0.00 0.00 3.25
803 862 2.550606 TCGTTCCTGTGCAATTTGGTAC 59.449 45.455 0.00 0.00 0.00 3.34
804 863 2.552315 CGTTCCTGTGCAATTTGGTACT 59.448 45.455 0.00 0.00 0.00 2.73
805 864 3.749088 CGTTCCTGTGCAATTTGGTACTA 59.251 43.478 0.00 0.00 0.00 1.82
806 865 4.214545 CGTTCCTGTGCAATTTGGTACTAA 59.785 41.667 0.00 0.00 0.00 2.24
807 866 5.278071 CGTTCCTGTGCAATTTGGTACTAAA 60.278 40.000 6.87 6.87 0.00 1.85
808 867 6.508777 GTTCCTGTGCAATTTGGTACTAAAA 58.491 36.000 8.57 2.84 0.00 1.52
809 868 6.325919 TCCTGTGCAATTTGGTACTAAAAG 57.674 37.500 8.57 5.92 0.00 2.27
810 869 6.065374 TCCTGTGCAATTTGGTACTAAAAGA 58.935 36.000 8.57 0.00 0.00 2.52
811 870 6.206634 TCCTGTGCAATTTGGTACTAAAAGAG 59.793 38.462 8.57 0.56 0.00 2.85
812 871 6.206634 CCTGTGCAATTTGGTACTAAAAGAGA 59.793 38.462 8.57 0.00 0.00 3.10
813 872 7.255451 CCTGTGCAATTTGGTACTAAAAGAGAA 60.255 37.037 8.57 0.00 0.00 2.87
814 873 7.648142 TGTGCAATTTGGTACTAAAAGAGAAG 58.352 34.615 8.57 0.00 0.00 2.85
815 874 7.500892 TGTGCAATTTGGTACTAAAAGAGAAGA 59.499 33.333 8.57 0.00 0.00 2.87
816 875 8.349983 GTGCAATTTGGTACTAAAAGAGAAGAA 58.650 33.333 8.57 0.00 0.00 2.52
817 876 8.567948 TGCAATTTGGTACTAAAAGAGAAGAAG 58.432 33.333 8.57 0.00 0.00 2.85
818 877 8.784043 GCAATTTGGTACTAAAAGAGAAGAAGA 58.216 33.333 8.57 0.00 0.00 2.87
842 901 9.178758 AGAAGAAAACATAGTCTTTTTCTGTGT 57.821 29.630 10.22 0.00 46.55 3.72
843 902 9.226345 GAAGAAAACATAGTCTTTTTCTGTGTG 57.774 33.333 10.22 0.00 46.55 3.82
844 903 8.281212 AGAAAACATAGTCTTTTTCTGTGTGT 57.719 30.769 9.10 0.00 45.86 3.72
845 904 8.739972 AGAAAACATAGTCTTTTTCTGTGTGTT 58.260 29.630 9.10 0.00 45.86 3.32
846 905 9.353999 GAAAACATAGTCTTTTTCTGTGTGTTT 57.646 29.630 0.00 0.00 35.61 2.83
847 906 9.705290 AAAACATAGTCTTTTTCTGTGTGTTTT 57.295 25.926 0.00 0.00 40.40 2.43
849 908 9.783256 AACATAGTCTTTTTCTGTGTGTTTTAC 57.217 29.630 0.00 0.00 37.34 2.01
850 909 8.952278 ACATAGTCTTTTTCTGTGTGTTTTACA 58.048 29.630 0.00 0.00 36.28 2.41
851 910 9.438291 CATAGTCTTTTTCTGTGTGTTTTACAG 57.562 33.333 0.00 0.00 45.30 2.74
852 911 7.448748 AGTCTTTTTCTGTGTGTTTTACAGT 57.551 32.000 0.00 0.00 44.49 3.55
853 912 8.556213 AGTCTTTTTCTGTGTGTTTTACAGTA 57.444 30.769 0.00 0.00 44.49 2.74
854 913 9.174166 AGTCTTTTTCTGTGTGTTTTACAGTAT 57.826 29.630 0.00 0.00 44.49 2.12
892 951 0.467804 TTGCTACCTGTGCAGTGACA 59.532 50.000 0.00 0.00 41.71 3.58
1140 1223 0.394899 CCACCTGGGCTTTCTGGATC 60.395 60.000 0.00 0.00 0.00 3.36
1141 1224 0.745845 CACCTGGGCTTTCTGGATCG 60.746 60.000 0.00 0.00 0.00 3.69
1142 1225 1.153086 CCTGGGCTTTCTGGATCGG 60.153 63.158 0.00 0.00 0.00 4.18
1143 1226 1.821332 CTGGGCTTTCTGGATCGGC 60.821 63.158 0.00 0.00 0.00 5.54
1144 1227 2.272146 GGGCTTTCTGGATCGGCA 59.728 61.111 0.00 0.00 0.00 5.69
1145 1228 1.378514 GGGCTTTCTGGATCGGCAA 60.379 57.895 0.00 0.00 0.00 4.52
1216 1299 1.575576 CTCCACCGTCGACGACTTCT 61.576 60.000 37.65 12.30 43.02 2.85
1217 1300 1.168407 TCCACCGTCGACGACTTCTT 61.168 55.000 37.65 12.29 43.02 2.52
1228 1311 3.425858 CGACGACTTCTTGAGGTCTTTTC 59.574 47.826 10.38 4.48 0.00 2.29
1229 1312 4.623002 GACGACTTCTTGAGGTCTTTTCT 58.377 43.478 10.38 0.00 0.00 2.52
1230 1313 5.024785 ACGACTTCTTGAGGTCTTTTCTT 57.975 39.130 10.38 0.00 0.00 2.52
1241 1324 1.073098 TCTTTTCTTCCCCCACCCTC 58.927 55.000 0.00 0.00 0.00 4.30
1242 1326 0.777446 CTTTTCTTCCCCCACCCTCA 59.223 55.000 0.00 0.00 0.00 3.86
1303 1390 6.543465 GGTTCCTTGTCAATGATGTATGATGA 59.457 38.462 0.00 0.00 0.00 2.92
1336 1425 0.462581 TTTAGATGCCCTGCGAGCAG 60.463 55.000 17.44 17.44 44.90 4.24
1347 1436 4.427394 CGAGCAGCTCGCCTTAAT 57.573 55.556 30.85 0.00 46.75 1.40
1417 1512 2.300152 CTCTGGCTCTAGTTTGTGACCA 59.700 50.000 0.00 0.00 0.00 4.02
1455 1550 4.726416 CAAACAGGGATGTCTGAAAATCG 58.274 43.478 0.00 0.00 38.11 3.34
1491 1586 8.758633 TTAATTAAGCTGAACTGAGTACTGTC 57.241 34.615 0.00 0.00 0.00 3.51
1492 1587 3.669251 AAGCTGAACTGAGTACTGTCC 57.331 47.619 0.00 0.00 0.00 4.02
1513 1608 2.409064 TTGACTGACTCCCTGGGTTA 57.591 50.000 13.56 0.00 0.00 2.85
1533 1628 8.597167 TGGGTTATCTTCTACCAGATGATAATG 58.403 37.037 19.28 0.00 45.17 1.90
1553 1648 3.653344 TGTCTGTCATTACTCACAGTGC 58.347 45.455 0.00 0.00 40.85 4.40
1554 1649 2.663602 GTCTGTCATTACTCACAGTGCG 59.336 50.000 0.00 0.00 40.85 5.34
1555 1650 1.995484 CTGTCATTACTCACAGTGCGG 59.005 52.381 0.00 0.00 36.12 5.69
1603 1705 5.574443 GCTTCAGAAATCTGGTTATGTTTGC 59.426 40.000 10.37 0.15 43.91 3.68
1607 1709 8.402798 TCAGAAATCTGGTTATGTTTGCTTTA 57.597 30.769 10.37 0.00 43.91 1.85
1654 1757 4.722361 TTTCCACCTTTTGCGTTTACTT 57.278 36.364 0.00 0.00 0.00 2.24
1656 1759 3.280295 TCCACCTTTTGCGTTTACTTCA 58.720 40.909 0.00 0.00 0.00 3.02
1657 1760 3.886505 TCCACCTTTTGCGTTTACTTCAT 59.113 39.130 0.00 0.00 0.00 2.57
1660 1763 6.879993 TCCACCTTTTGCGTTTACTTCATATA 59.120 34.615 0.00 0.00 0.00 0.86
1663 1766 7.855904 CACCTTTTGCGTTTACTTCATATATCC 59.144 37.037 0.00 0.00 0.00 2.59
1664 1767 7.012989 ACCTTTTGCGTTTACTTCATATATCCC 59.987 37.037 0.00 0.00 0.00 3.85
1665 1768 7.228706 CCTTTTGCGTTTACTTCATATATCCCT 59.771 37.037 0.00 0.00 0.00 4.20
1707 1817 3.826729 GGTGGTCTTTCAGCCTTTACAAT 59.173 43.478 0.00 0.00 0.00 2.71
1782 1892 5.429957 AGAATAAGATTGAGCCGAAATGC 57.570 39.130 0.00 0.00 0.00 3.56
1791 1901 3.518068 CCGAAATGCGAAGGCCCC 61.518 66.667 0.00 0.00 44.57 5.80
1795 1905 1.620822 GAAATGCGAAGGCCCCATAT 58.379 50.000 0.00 0.00 38.85 1.78
1799 1909 2.555547 GCGAAGGCCCCATATGTGC 61.556 63.158 0.00 4.01 0.00 4.57
1891 2001 5.027737 GCATCTTTCGCATCATTCGTTTTA 58.972 37.500 0.00 0.00 0.00 1.52
1892 2002 5.682862 GCATCTTTCGCATCATTCGTTTTAT 59.317 36.000 0.00 0.00 0.00 1.40
1899 2009 9.989869 TTTCGCATCATTCGTTTTATACAATTA 57.010 25.926 0.00 0.00 0.00 1.40
1902 2012 8.882199 CGCATCATTCGTTTTATACAATTACTG 58.118 33.333 0.00 0.00 0.00 2.74
1949 2059 9.294030 CTCCTTTTGACAAATATCATGTTTAGC 57.706 33.333 0.50 0.00 0.00 3.09
2078 2188 2.561419 ACTAACGAAGCTGCTCAGGTAA 59.439 45.455 1.00 0.00 38.35 2.85
2099 2209 7.344871 AGGTAAAAGTCCTGTAGTGCATACTAT 59.655 37.037 0.00 0.00 41.22 2.12
2155 2265 6.969473 CACGTGGTATGCTATATCATAGACTG 59.031 42.308 7.95 0.00 30.30 3.51
2178 2288 8.154649 CTGAAAGTTTGTCAAATACTACACCT 57.845 34.615 0.40 0.00 0.00 4.00
2192 2302 9.511272 AAATACTACACCTTCCGTCTTAAAATT 57.489 29.630 0.00 0.00 0.00 1.82
2243 2353 6.846325 ACTGAAGTTAGTACAAAGTTGAGC 57.154 37.500 0.00 0.00 29.23 4.26
2337 2538 2.317040 GCTGTACCTGTATGGAGCCTA 58.683 52.381 0.00 0.00 39.71 3.93
2367 2568 2.477375 GTGCTTGTGCCAAATGTCATTG 59.523 45.455 0.00 0.00 38.71 2.82
2458 2659 4.265556 CGAAAGACATAGCGGTACTTTGAG 59.734 45.833 11.91 4.55 32.23 3.02
2490 2691 6.956047 ACATTGTCGAAGAAACTTAAACCTC 58.044 36.000 0.00 0.00 39.69 3.85
2500 2701 8.533569 AAGAAACTTAAACCTCAAAGGATTGA 57.466 30.769 0.00 0.00 43.18 2.57
2515 2716 9.177608 TCAAAGGATTGACATCTTTGGTTATAG 57.822 33.333 18.18 0.00 40.59 1.31
2587 2790 9.435688 AGGTTTCATTATTTCAACCAAAATAGC 57.564 29.630 2.91 0.00 41.14 2.97
2592 2795 8.085296 TCATTATTTCAACCAAAATAGCGTGTT 58.915 29.630 0.00 0.00 33.77 3.32
2596 2799 3.880490 TCAACCAAAATAGCGTGTTGTCT 59.120 39.130 0.00 0.00 37.96 3.41
2608 2811 2.225491 CGTGTTGTCTTGTATGGTTGGG 59.775 50.000 0.00 0.00 0.00 4.12
2685 4052 7.166168 GCGCATTGTTTTGAAGTATGTTTATG 58.834 34.615 0.30 0.00 0.00 1.90
2759 4127 4.610945 AGTTCTTACAATTGTGCTGCAAC 58.389 39.130 21.42 14.66 40.28 4.17
2768 4136 3.694043 TTGTGCTGCAACAGTATCCTA 57.306 42.857 2.77 0.00 33.43 2.94
2816 4185 9.502145 TTTTTATACTCGATTGAATGATGCAAC 57.498 29.630 0.00 0.00 0.00 4.17
2822 4191 3.119743 CGATTGAATGATGCAACCAGTGT 60.120 43.478 0.00 0.00 0.00 3.55
2836 4205 1.043116 CAGTGTCGGATCTAGGCCCA 61.043 60.000 0.00 0.00 0.00 5.36
2837 4206 0.757188 AGTGTCGGATCTAGGCCCAG 60.757 60.000 0.00 0.00 0.00 4.45
2839 4208 2.524394 TCGGATCTAGGCCCAGGC 60.524 66.667 0.00 0.00 41.06 4.85
3132 4549 1.133792 GTACAGCATACAATGGGGCCT 60.134 52.381 0.84 0.00 0.00 5.19
3272 4689 3.003585 CGCATGCACCTATTCATTAGCAA 59.996 43.478 19.57 0.00 35.45 3.91
3308 4725 8.514594 TGCAAAATACTCCTTCATTCTTGTAAG 58.485 33.333 0.00 0.00 0.00 2.34
3418 4835 0.916086 TGAGTGTTGGTTGGTGGTCT 59.084 50.000 0.00 0.00 0.00 3.85
3538 4966 4.873746 TTTCTGGAGTACAAGGACTCAG 57.126 45.455 14.05 9.40 46.51 3.35
3796 5224 1.554160 CTGAGGACAGCAAGATCCTGT 59.446 52.381 3.10 3.10 45.74 4.00
4092 5520 3.931247 CCGAACGGTGGGTGGACA 61.931 66.667 4.99 0.00 0.00 4.02
4398 5826 5.414765 ACCTTTCTTCAAAGTGTTCGAACTT 59.585 36.000 27.32 12.97 42.21 2.66
4411 5839 3.086818 TCGAACTTGTTGACATCGACA 57.913 42.857 4.69 0.00 37.59 4.35
4581 6009 1.067416 CTACCATCGCCGCTTAGCA 59.933 57.895 4.70 0.00 0.00 3.49
4774 6202 0.471971 TCTCCCCCTAGCATAGTGGC 60.472 60.000 0.00 0.00 34.57 5.01
4816 6251 2.187896 TAGCTGCTGCACATGCCTGA 62.188 55.000 18.42 0.00 42.74 3.86
4825 6260 3.911868 TGCACATGCCTGAAAATTGTAC 58.088 40.909 0.49 0.00 41.18 2.90
4827 6262 3.500982 CACATGCCTGAAAATTGTACCG 58.499 45.455 0.00 0.00 0.00 4.02
4830 6265 4.762765 ACATGCCTGAAAATTGTACCGTTA 59.237 37.500 0.00 0.00 0.00 3.18
4881 6316 8.211198 GTTTCAACCATGTTGTATTTAGAACG 57.789 34.615 6.83 0.00 32.68 3.95
5014 6449 3.686726 GGGAATAGCTTGCGGATATGAAG 59.313 47.826 0.00 0.00 0.00 3.02
5024 6459 6.698008 TTGCGGATATGAAGTCAAATGAAT 57.302 33.333 0.00 0.00 0.00 2.57
5070 6513 6.751888 TCTGATAAGTAATGTGTCATGTGTCG 59.248 38.462 0.00 0.00 0.00 4.35
5173 6620 5.371526 TGACAGCAGTTTCTTTCTCTTGAT 58.628 37.500 0.00 0.00 0.00 2.57
5208 6658 4.919754 AGCTTTGCTTCATTTCGTTGAATC 59.080 37.500 0.00 0.00 33.89 2.52
5246 6697 0.036022 GGAAGTGTTGCTCTGCTCCT 59.964 55.000 0.00 0.00 0.00 3.69
5331 6791 9.979578 ATGTTTTATCAACATGCAAAGTTTAGA 57.020 25.926 5.27 2.43 39.22 2.10
5352 6812 5.063204 AGAGATGAAAAACATTCGTGGACA 58.937 37.500 0.00 0.00 39.56 4.02
5429 6890 7.424227 ACATCATTTTTGTATGTTTTGCCTG 57.576 32.000 0.00 0.00 29.68 4.85
5447 6908 3.467803 CCTGGACCTCCACGAATATTTC 58.532 50.000 0.00 0.00 42.01 2.17
5450 6911 4.766375 TGGACCTCCACGAATATTTCTTC 58.234 43.478 0.00 0.00 42.01 2.87
5464 6927 8.328146 CGAATATTTCTTCAGCACGAGAATTTA 58.672 33.333 0.00 0.00 0.00 1.40
5472 6935 6.801539 TCAGCACGAGAATTTATTTGTTCT 57.198 33.333 0.00 0.00 37.39 3.01
5553 7018 9.787532 TTTTCTTCTGATTTTACTGTTCACTTG 57.212 29.630 0.00 0.00 0.00 3.16
5584 7049 2.037251 GCACCTGAGTACAGAAACTCCA 59.963 50.000 0.00 0.00 46.03 3.86
5585 7050 3.307059 GCACCTGAGTACAGAAACTCCAT 60.307 47.826 0.00 0.00 46.03 3.41
5586 7051 4.248859 CACCTGAGTACAGAAACTCCATG 58.751 47.826 0.00 0.00 46.03 3.66
5587 7052 3.904339 ACCTGAGTACAGAAACTCCATGT 59.096 43.478 0.00 0.00 46.03 3.21
5588 7053 5.047306 CACCTGAGTACAGAAACTCCATGTA 60.047 44.000 0.00 0.00 46.03 2.29
5589 7054 5.047235 ACCTGAGTACAGAAACTCCATGTAC 60.047 44.000 6.61 6.61 46.16 2.90
5590 7055 5.401531 TGAGTACAGAAACTCCATGTACC 57.598 43.478 10.25 4.45 46.71 3.34
5591 7056 4.082408 TGAGTACAGAAACTCCATGTACCG 60.082 45.833 10.25 0.00 46.71 4.02
5644 7109 0.730265 GGCGCGACAAATACATGGAA 59.270 50.000 12.10 0.00 0.00 3.53
5687 7152 0.036732 ATTCTCAAGTGCTTCGCCCA 59.963 50.000 0.00 0.00 0.00 5.36
5750 7215 2.026729 TGGTGAGGCATAAATGTTCCGA 60.027 45.455 0.00 0.00 0.00 4.55
5765 7230 0.820074 TCCGAAACACCCACGCATTT 60.820 50.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.201989 TCATCTTGTAGGATGTCTGTATAGTTT 57.798 33.333 4.25 0.00 42.45 2.66
2 3 8.768501 TCATCTTGTAGGATGTCTGTATAGTT 57.231 34.615 4.25 0.00 42.45 2.24
6 7 9.911788 AAAATTCATCTTGTAGGATGTCTGTAT 57.088 29.630 4.25 0.00 42.45 2.29
7 8 9.166173 CAAAATTCATCTTGTAGGATGTCTGTA 57.834 33.333 4.25 0.00 42.45 2.74
8 9 7.884877 TCAAAATTCATCTTGTAGGATGTCTGT 59.115 33.333 4.25 0.00 42.45 3.41
9 10 8.272545 TCAAAATTCATCTTGTAGGATGTCTG 57.727 34.615 4.25 0.00 42.45 3.51
10 11 8.868522 TTCAAAATTCATCTTGTAGGATGTCT 57.131 30.769 4.25 0.00 42.45 3.41
31 32 9.160576 CGTGTAGAACATTTTCGTAAATTTCAA 57.839 29.630 16.57 0.00 36.78 2.69
32 33 8.549548 TCGTGTAGAACATTTTCGTAAATTTCA 58.450 29.630 16.57 1.35 36.78 2.69
33 34 8.922738 TCGTGTAGAACATTTTCGTAAATTTC 57.077 30.769 0.00 5.99 36.78 2.17
34 35 7.532884 GCTCGTGTAGAACATTTTCGTAAATTT 59.467 33.333 0.00 0.00 36.78 1.82
35 36 7.013529 GCTCGTGTAGAACATTTTCGTAAATT 58.986 34.615 0.00 0.00 36.78 1.82
36 37 6.367969 AGCTCGTGTAGAACATTTTCGTAAAT 59.632 34.615 0.00 0.00 36.78 1.40
37 38 5.693104 AGCTCGTGTAGAACATTTTCGTAAA 59.307 36.000 0.00 0.00 36.78 2.01
38 39 5.224888 AGCTCGTGTAGAACATTTTCGTAA 58.775 37.500 0.00 0.00 36.78 3.18
39 40 4.801891 AGCTCGTGTAGAACATTTTCGTA 58.198 39.130 0.00 0.00 36.78 3.43
40 41 3.650139 AGCTCGTGTAGAACATTTTCGT 58.350 40.909 0.00 0.00 36.78 3.85
41 42 5.330866 CGATAGCTCGTGTAGAACATTTTCG 60.331 44.000 0.00 0.00 40.07 3.46
42 43 5.051641 CCGATAGCTCGTGTAGAACATTTTC 60.052 44.000 0.00 0.00 43.49 2.29
43 44 4.804139 CCGATAGCTCGTGTAGAACATTTT 59.196 41.667 0.00 0.00 43.49 1.82
44 45 4.097437 TCCGATAGCTCGTGTAGAACATTT 59.903 41.667 0.00 0.00 43.49 2.32
45 46 3.630769 TCCGATAGCTCGTGTAGAACATT 59.369 43.478 0.00 0.00 43.49 2.71
46 47 3.211865 TCCGATAGCTCGTGTAGAACAT 58.788 45.455 0.00 0.00 43.49 2.71
47 48 2.635714 TCCGATAGCTCGTGTAGAACA 58.364 47.619 0.00 0.00 43.49 3.18
48 49 3.687572 TTCCGATAGCTCGTGTAGAAC 57.312 47.619 0.00 0.00 43.49 3.01
49 50 4.097437 ACATTTCCGATAGCTCGTGTAGAA 59.903 41.667 0.00 0.00 43.49 2.10
50 51 3.630769 ACATTTCCGATAGCTCGTGTAGA 59.369 43.478 0.00 0.00 43.49 2.59
51 52 3.966154 ACATTTCCGATAGCTCGTGTAG 58.034 45.455 0.00 0.00 43.49 2.74
52 53 4.097437 AGAACATTTCCGATAGCTCGTGTA 59.903 41.667 0.00 0.00 43.49 2.90
53 54 2.961526 ACATTTCCGATAGCTCGTGT 57.038 45.000 0.00 0.00 43.49 4.49
54 55 3.448686 AGAACATTTCCGATAGCTCGTG 58.551 45.455 0.00 0.00 43.49 4.35
55 56 3.802948 AGAACATTTCCGATAGCTCGT 57.197 42.857 0.00 0.00 43.49 4.18
56 57 6.346919 CCAATTAGAACATTTCCGATAGCTCG 60.347 42.308 0.00 0.00 44.62 5.03
57 58 6.073003 CCCAATTAGAACATTTCCGATAGCTC 60.073 42.308 0.00 0.00 0.00 4.09
58 59 5.765182 CCCAATTAGAACATTTCCGATAGCT 59.235 40.000 0.00 0.00 0.00 3.32
59 60 5.531287 ACCCAATTAGAACATTTCCGATAGC 59.469 40.000 0.00 0.00 0.00 2.97
60 61 7.713507 TGTACCCAATTAGAACATTTCCGATAG 59.286 37.037 0.00 0.00 0.00 2.08
61 62 7.566569 TGTACCCAATTAGAACATTTCCGATA 58.433 34.615 0.00 0.00 0.00 2.92
62 63 6.419791 TGTACCCAATTAGAACATTTCCGAT 58.580 36.000 0.00 0.00 0.00 4.18
63 64 5.806818 TGTACCCAATTAGAACATTTCCGA 58.193 37.500 0.00 0.00 0.00 4.55
64 65 6.319399 GTTGTACCCAATTAGAACATTTCCG 58.681 40.000 0.00 0.00 32.11 4.30
65 66 6.209788 TGGTTGTACCCAATTAGAACATTTCC 59.790 38.462 0.00 0.00 37.50 3.13
66 67 7.222000 TGGTTGTACCCAATTAGAACATTTC 57.778 36.000 0.00 0.00 37.50 2.17
67 68 7.604657 TTGGTTGTACCCAATTAGAACATTT 57.395 32.000 0.00 0.00 39.56 2.32
68 69 7.507616 TCTTTGGTTGTACCCAATTAGAACATT 59.492 33.333 4.64 0.00 43.77 2.71
69 70 7.007723 TCTTTGGTTGTACCCAATTAGAACAT 58.992 34.615 4.64 0.00 43.77 2.71
70 71 6.366340 TCTTTGGTTGTACCCAATTAGAACA 58.634 36.000 4.64 0.00 43.77 3.18
71 72 6.887626 TCTTTGGTTGTACCCAATTAGAAC 57.112 37.500 4.64 0.00 43.77 3.01
72 73 7.007723 ACATCTTTGGTTGTACCCAATTAGAA 58.992 34.615 4.64 0.00 43.77 2.10
73 74 6.432783 CACATCTTTGGTTGTACCCAATTAGA 59.567 38.462 4.64 6.20 43.77 2.10
74 75 6.208599 ACACATCTTTGGTTGTACCCAATTAG 59.791 38.462 4.64 1.54 43.77 1.73
75 76 6.071984 ACACATCTTTGGTTGTACCCAATTA 58.928 36.000 4.64 0.00 43.77 1.40
76 77 4.898861 ACACATCTTTGGTTGTACCCAATT 59.101 37.500 4.64 0.00 43.77 2.32
77 78 4.479158 ACACATCTTTGGTTGTACCCAAT 58.521 39.130 4.64 0.00 43.77 3.16
78 79 3.904717 ACACATCTTTGGTTGTACCCAA 58.095 40.909 0.00 0.00 42.69 4.12
79 80 3.586470 ACACATCTTTGGTTGTACCCA 57.414 42.857 0.00 0.00 37.50 4.51
80 81 3.005367 CCAACACATCTTTGGTTGTACCC 59.995 47.826 0.00 0.00 40.10 3.69
81 82 4.237349 CCAACACATCTTTGGTTGTACC 57.763 45.455 0.00 0.00 40.10 3.34
89 90 7.438757 TCAATTGAATCAACCAACACATCTTTG 59.561 33.333 5.45 0.00 0.00 2.77
90 91 7.499292 TCAATTGAATCAACCAACACATCTTT 58.501 30.769 5.45 0.00 0.00 2.52
91 92 7.053316 TCAATTGAATCAACCAACACATCTT 57.947 32.000 5.45 0.00 0.00 2.40
92 93 6.266103 ACTCAATTGAATCAACCAACACATCT 59.734 34.615 9.88 0.00 0.00 2.90
93 94 6.449698 ACTCAATTGAATCAACCAACACATC 58.550 36.000 9.88 0.00 0.00 3.06
94 95 6.409524 ACTCAATTGAATCAACCAACACAT 57.590 33.333 9.88 0.00 0.00 3.21
95 96 5.850557 ACTCAATTGAATCAACCAACACA 57.149 34.783 9.88 0.00 0.00 3.72
96 97 6.016276 ACCTACTCAATTGAATCAACCAACAC 60.016 38.462 9.88 0.00 0.00 3.32
97 98 6.068010 ACCTACTCAATTGAATCAACCAACA 58.932 36.000 9.88 0.00 0.00 3.33
98 99 6.575162 ACCTACTCAATTGAATCAACCAAC 57.425 37.500 9.88 0.00 0.00 3.77
99 100 6.775142 TCAACCTACTCAATTGAATCAACCAA 59.225 34.615 9.88 0.00 29.56 3.67
100 101 6.303054 TCAACCTACTCAATTGAATCAACCA 58.697 36.000 9.88 0.00 29.56 3.67
101 102 6.817765 TCAACCTACTCAATTGAATCAACC 57.182 37.500 9.88 0.00 29.56 3.77
102 103 9.696917 ATTTTCAACCTACTCAATTGAATCAAC 57.303 29.630 9.88 0.00 40.88 3.18
103 104 9.695526 CATTTTCAACCTACTCAATTGAATCAA 57.304 29.630 9.88 0.00 40.88 2.57
104 105 8.306038 CCATTTTCAACCTACTCAATTGAATCA 58.694 33.333 9.88 0.00 40.88 2.57
105 106 8.306761 ACCATTTTCAACCTACTCAATTGAATC 58.693 33.333 9.88 0.00 40.88 2.52
106 107 8.193953 ACCATTTTCAACCTACTCAATTGAAT 57.806 30.769 9.88 1.39 40.88 2.57
107 108 7.595819 ACCATTTTCAACCTACTCAATTGAA 57.404 32.000 9.88 0.00 39.84 2.69
108 109 7.069331 ACAACCATTTTCAACCTACTCAATTGA 59.931 33.333 8.12 8.12 0.00 2.57
109 110 7.209475 ACAACCATTTTCAACCTACTCAATTG 58.791 34.615 0.00 0.00 0.00 2.32
110 111 7.360113 ACAACCATTTTCAACCTACTCAATT 57.640 32.000 0.00 0.00 0.00 2.32
111 112 6.976934 ACAACCATTTTCAACCTACTCAAT 57.023 33.333 0.00 0.00 0.00 2.57
112 113 7.721842 TCATACAACCATTTTCAACCTACTCAA 59.278 33.333 0.00 0.00 0.00 3.02
113 114 7.227873 TCATACAACCATTTTCAACCTACTCA 58.772 34.615 0.00 0.00 0.00 3.41
114 115 7.681939 TCATACAACCATTTTCAACCTACTC 57.318 36.000 0.00 0.00 0.00 2.59
115 116 7.504238 TGTTCATACAACCATTTTCAACCTACT 59.496 33.333 0.00 0.00 0.00 2.57
116 117 7.593644 GTGTTCATACAACCATTTTCAACCTAC 59.406 37.037 0.00 0.00 35.69 3.18
117 118 7.504238 AGTGTTCATACAACCATTTTCAACCTA 59.496 33.333 0.00 0.00 35.69 3.08
118 119 6.323739 AGTGTTCATACAACCATTTTCAACCT 59.676 34.615 0.00 0.00 35.69 3.50
119 120 6.512297 AGTGTTCATACAACCATTTTCAACC 58.488 36.000 0.00 0.00 35.69 3.77
120 121 9.522804 TTAAGTGTTCATACAACCATTTTCAAC 57.477 29.630 0.00 0.00 35.69 3.18
129 130 9.581099 CCCAAATTATTAAGTGTTCATACAACC 57.419 33.333 0.00 0.00 35.69 3.77
148 149 9.853177 TTTCAAACCATGTTTATTACCCAAATT 57.147 25.926 0.00 0.00 0.00 1.82
149 150 9.500785 CTTTCAAACCATGTTTATTACCCAAAT 57.499 29.630 0.00 0.00 0.00 2.32
150 151 7.934120 CCTTTCAAACCATGTTTATTACCCAAA 59.066 33.333 0.00 0.00 0.00 3.28
151 152 7.290248 TCCTTTCAAACCATGTTTATTACCCAA 59.710 33.333 0.00 0.00 0.00 4.12
152 153 6.782988 TCCTTTCAAACCATGTTTATTACCCA 59.217 34.615 0.00 0.00 0.00 4.51
153 154 7.234661 TCCTTTCAAACCATGTTTATTACCC 57.765 36.000 0.00 0.00 0.00 3.69
154 155 9.203421 CTTTCCTTTCAAACCATGTTTATTACC 57.797 33.333 0.00 0.00 0.00 2.85
155 156 9.974980 TCTTTCCTTTCAAACCATGTTTATTAC 57.025 29.630 0.00 0.00 0.00 1.89
158 159 9.492973 CATTCTTTCCTTTCAAACCATGTTTAT 57.507 29.630 0.00 0.00 0.00 1.40
159 160 8.700051 TCATTCTTTCCTTTCAAACCATGTTTA 58.300 29.630 0.00 0.00 0.00 2.01
160 161 7.495606 GTCATTCTTTCCTTTCAAACCATGTTT 59.504 33.333 0.00 0.00 0.00 2.83
161 162 6.986231 GTCATTCTTTCCTTTCAAACCATGTT 59.014 34.615 0.00 0.00 0.00 2.71
162 163 6.462909 GGTCATTCTTTCCTTTCAAACCATGT 60.463 38.462 0.00 0.00 0.00 3.21
163 164 5.928264 GGTCATTCTTTCCTTTCAAACCATG 59.072 40.000 0.00 0.00 0.00 3.66
164 165 5.602145 TGGTCATTCTTTCCTTTCAAACCAT 59.398 36.000 0.00 0.00 0.00 3.55
165 166 4.959210 TGGTCATTCTTTCCTTTCAAACCA 59.041 37.500 0.00 0.00 0.00 3.67
166 167 5.529581 TGGTCATTCTTTCCTTTCAAACC 57.470 39.130 0.00 0.00 0.00 3.27
167 168 7.333174 TGTTTTGGTCATTCTTTCCTTTCAAAC 59.667 33.333 0.00 0.00 0.00 2.93
168 169 7.390027 TGTTTTGGTCATTCTTTCCTTTCAAA 58.610 30.769 0.00 0.00 0.00 2.69
169 170 6.940739 TGTTTTGGTCATTCTTTCCTTTCAA 58.059 32.000 0.00 0.00 0.00 2.69
170 171 6.537453 TGTTTTGGTCATTCTTTCCTTTCA 57.463 33.333 0.00 0.00 0.00 2.69
171 172 7.041721 AGTTGTTTTGGTCATTCTTTCCTTTC 58.958 34.615 0.00 0.00 0.00 2.62
172 173 6.946340 AGTTGTTTTGGTCATTCTTTCCTTT 58.054 32.000 0.00 0.00 0.00 3.11
173 174 6.544928 AGTTGTTTTGGTCATTCTTTCCTT 57.455 33.333 0.00 0.00 0.00 3.36
174 175 6.340522 CAAGTTGTTTTGGTCATTCTTTCCT 58.659 36.000 0.00 0.00 0.00 3.36
175 176 5.523552 CCAAGTTGTTTTGGTCATTCTTTCC 59.476 40.000 1.45 0.00 42.16 3.13
176 177 6.337356 TCCAAGTTGTTTTGGTCATTCTTTC 58.663 36.000 1.45 0.00 46.23 2.62
177 178 6.293004 TCCAAGTTGTTTTGGTCATTCTTT 57.707 33.333 1.45 0.00 46.23 2.52
178 179 5.930837 TCCAAGTTGTTTTGGTCATTCTT 57.069 34.783 1.45 0.00 46.23 2.52
179 180 5.930837 TTCCAAGTTGTTTTGGTCATTCT 57.069 34.783 1.45 0.00 46.23 2.40
180 181 6.976636 TTTTCCAAGTTGTTTTGGTCATTC 57.023 33.333 1.45 0.00 46.23 2.67
181 182 6.150307 GGTTTTTCCAAGTTGTTTTGGTCATT 59.850 34.615 1.45 0.00 46.23 2.57
182 183 5.645929 GGTTTTTCCAAGTTGTTTTGGTCAT 59.354 36.000 1.45 0.00 46.23 3.06
183 184 4.998033 GGTTTTTCCAAGTTGTTTTGGTCA 59.002 37.500 1.45 0.00 46.23 4.02
184 185 5.242434 AGGTTTTTCCAAGTTGTTTTGGTC 58.758 37.500 1.45 0.00 46.23 4.02
185 186 5.235850 AGGTTTTTCCAAGTTGTTTTGGT 57.764 34.783 1.45 0.00 46.23 3.67
187 188 5.937540 AGGAAGGTTTTTCCAAGTTGTTTTG 59.062 36.000 8.51 0.00 41.00 2.44
188 189 6.121776 AGGAAGGTTTTTCCAAGTTGTTTT 57.878 33.333 8.51 0.00 41.00 2.43
189 190 5.338056 GGAGGAAGGTTTTTCCAAGTTGTTT 60.338 40.000 8.51 0.00 41.00 2.83
190 191 4.161565 GGAGGAAGGTTTTTCCAAGTTGTT 59.838 41.667 8.51 0.00 41.00 2.83
191 192 3.704566 GGAGGAAGGTTTTTCCAAGTTGT 59.295 43.478 8.51 0.00 41.00 3.32
204 205 2.200955 GAAGATTGAGGGGAGGAAGGT 58.799 52.381 0.00 0.00 0.00 3.50
234 235 2.061061 GGAGGGGAGATGAATCCATGT 58.939 52.381 0.00 0.00 41.52 3.21
392 433 4.487804 TCCCAATGGACAAATTTGAGGAA 58.512 39.130 24.64 7.51 35.03 3.36
408 449 1.073923 GGCCGTCTAATCCATCCCAAT 59.926 52.381 0.00 0.00 0.00 3.16
427 468 2.228343 GGTATGAATCTACGTCGGAGGG 59.772 54.545 4.23 0.00 0.00 4.30
428 469 2.882761 TGGTATGAATCTACGTCGGAGG 59.117 50.000 4.23 0.00 0.00 4.30
434 475 3.567397 AGGAGCTGGTATGAATCTACGT 58.433 45.455 0.00 0.00 0.00 3.57
464 505 2.367567 ACAGCGAGAAACCTTAACCTCA 59.632 45.455 0.00 0.00 0.00 3.86
492 533 1.338294 TGACACCAATATCGCCGTTGT 60.338 47.619 0.00 0.00 0.00 3.32
517 559 7.174772 TCGTTGAATCCTTGAATCAATCTGAAA 59.825 33.333 0.00 0.00 34.59 2.69
548 590 0.391661 AACGCACTGGAGCCATAGTG 60.392 55.000 7.30 7.30 45.40 2.74
562 604 3.074281 CCCCTAAGGACCAACGCA 58.926 61.111 0.00 0.00 38.24 5.24
663 721 3.684908 TGGATCATCAAACGACCATTGT 58.315 40.909 0.00 0.00 0.00 2.71
777 836 4.111916 CAAATTGCACAGGAACGACTTTT 58.888 39.130 0.00 0.00 0.00 2.27
778 837 3.490761 CCAAATTGCACAGGAACGACTTT 60.491 43.478 0.00 0.00 0.00 2.66
779 838 2.034558 CCAAATTGCACAGGAACGACTT 59.965 45.455 0.00 0.00 0.00 3.01
780 839 1.608590 CCAAATTGCACAGGAACGACT 59.391 47.619 0.00 0.00 0.00 4.18
781 840 1.336755 ACCAAATTGCACAGGAACGAC 59.663 47.619 0.00 0.00 0.00 4.34
782 841 1.686355 ACCAAATTGCACAGGAACGA 58.314 45.000 0.00 0.00 0.00 3.85
783 842 2.552315 AGTACCAAATTGCACAGGAACG 59.448 45.455 0.00 0.00 0.00 3.95
784 843 5.699097 TTAGTACCAAATTGCACAGGAAC 57.301 39.130 0.00 0.00 0.00 3.62
785 844 6.547880 TCTTTTAGTACCAAATTGCACAGGAA 59.452 34.615 0.00 0.00 0.00 3.36
786 845 6.065374 TCTTTTAGTACCAAATTGCACAGGA 58.935 36.000 0.00 0.00 0.00 3.86
787 846 6.206634 TCTCTTTTAGTACCAAATTGCACAGG 59.793 38.462 0.00 0.00 0.00 4.00
788 847 7.202016 TCTCTTTTAGTACCAAATTGCACAG 57.798 36.000 0.00 0.00 0.00 3.66
789 848 7.500892 TCTTCTCTTTTAGTACCAAATTGCACA 59.499 33.333 0.00 0.00 0.00 4.57
790 849 7.871853 TCTTCTCTTTTAGTACCAAATTGCAC 58.128 34.615 0.00 0.00 0.00 4.57
791 850 8.458573 TTCTTCTCTTTTAGTACCAAATTGCA 57.541 30.769 0.00 0.00 0.00 4.08
792 851 8.784043 TCTTCTTCTCTTTTAGTACCAAATTGC 58.216 33.333 0.00 0.00 0.00 3.56
816 875 9.178758 ACACAGAAAAAGACTATGTTTTCTTCT 57.821 29.630 9.63 0.00 46.78 2.85
817 876 9.226345 CACACAGAAAAAGACTATGTTTTCTTC 57.774 33.333 9.63 0.00 46.78 2.87
818 877 8.739972 ACACACAGAAAAAGACTATGTTTTCTT 58.260 29.630 9.63 2.25 46.78 2.52
820 879 8.911247 AACACACAGAAAAAGACTATGTTTTC 57.089 30.769 3.58 3.58 41.83 2.29
821 880 9.705290 AAAACACACAGAAAAAGACTATGTTTT 57.295 25.926 0.00 0.00 40.83 2.43
823 882 9.783256 GTAAAACACACAGAAAAAGACTATGTT 57.217 29.630 0.00 0.00 0.00 2.71
824 883 8.952278 TGTAAAACACACAGAAAAAGACTATGT 58.048 29.630 0.00 0.00 30.04 2.29
825 884 9.438291 CTGTAAAACACACAGAAAAAGACTATG 57.562 33.333 0.00 0.00 45.10 2.23
826 885 9.174166 ACTGTAAAACACACAGAAAAAGACTAT 57.826 29.630 9.33 0.00 45.10 2.12
827 886 8.556213 ACTGTAAAACACACAGAAAAAGACTA 57.444 30.769 9.33 0.00 45.10 2.59
828 887 7.448748 ACTGTAAAACACACAGAAAAAGACT 57.551 32.000 9.33 0.00 45.10 3.24
865 924 2.757868 TGCACAGGTAGCAAGTGTTTTT 59.242 40.909 15.77 0.00 39.39 1.94
866 925 2.358898 CTGCACAGGTAGCAAGTGTTTT 59.641 45.455 15.77 0.00 42.17 2.43
867 926 1.949525 CTGCACAGGTAGCAAGTGTTT 59.050 47.619 15.77 0.00 42.17 2.83
868 927 1.134098 ACTGCACAGGTAGCAAGTGTT 60.134 47.619 15.77 2.57 42.17 3.32
869 928 0.469917 ACTGCACAGGTAGCAAGTGT 59.530 50.000 15.77 0.24 42.17 3.55
870 929 0.870393 CACTGCACAGGTAGCAAGTG 59.130 55.000 11.71 11.71 42.17 3.16
871 930 0.758734 TCACTGCACAGGTAGCAAGT 59.241 50.000 2.21 0.00 42.17 3.16
872 931 1.151668 GTCACTGCACAGGTAGCAAG 58.848 55.000 2.21 0.00 42.17 4.01
873 932 0.467804 TGTCACTGCACAGGTAGCAA 59.532 50.000 2.21 0.00 42.17 3.91
874 933 0.033920 CTGTCACTGCACAGGTAGCA 59.966 55.000 2.21 0.00 40.26 3.49
875 934 0.318441 TCTGTCACTGCACAGGTAGC 59.682 55.000 2.21 0.00 43.59 3.58
906 965 1.508545 GAGTGCGCAGAGAGCTGTA 59.491 57.895 12.22 0.00 44.17 2.74
907 966 2.261052 GAGTGCGCAGAGAGCTGT 59.739 61.111 12.22 0.00 44.17 4.40
908 967 2.879933 CGAGTGCGCAGAGAGCTG 60.880 66.667 12.22 0.00 45.13 4.24
921 980 1.028330 TAGTCGCCGAATGGACGAGT 61.028 55.000 0.00 11.27 44.24 4.18
1033 1095 4.933064 CATCTCCTCCGCGTCGCC 62.933 72.222 12.44 0.00 0.00 5.54
1034 1096 4.933064 CCATCTCCTCCGCGTCGC 62.933 72.222 7.29 7.29 0.00 5.19
1216 1299 2.140224 TGGGGGAAGAAAAGACCTCAA 58.860 47.619 0.00 0.00 28.64 3.02
1217 1300 1.423921 GTGGGGGAAGAAAAGACCTCA 59.576 52.381 0.00 0.00 0.00 3.86
1228 1311 2.204151 AGGTGAGGGTGGGGGAAG 60.204 66.667 0.00 0.00 0.00 3.46
1229 1312 2.204090 GAGGTGAGGGTGGGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
1230 1313 4.348495 GGAGGTGAGGGTGGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
1241 1324 1.685820 GAGGGTTTGGGAGGAGGTG 59.314 63.158 0.00 0.00 0.00 4.00
1242 1326 1.918800 CGAGGGTTTGGGAGGAGGT 60.919 63.158 0.00 0.00 0.00 3.85
1282 1369 6.541278 ACAGTCATCATACATCATTGACAAGG 59.459 38.462 4.42 0.00 39.27 3.61
1303 1390 9.125026 CAGGGCATCTAAATCTAAATTTACAGT 57.875 33.333 0.00 0.00 36.49 3.55
1336 1425 1.448985 TGTGTTGGATTAAGGCGAGC 58.551 50.000 0.00 0.00 0.00 5.03
1347 1436 2.369860 AGATCAGCAGTCTTGTGTTGGA 59.630 45.455 0.00 0.00 30.13 3.53
1417 1512 0.038166 TTTGCGGGAGGCTGAAATCT 59.962 50.000 0.00 0.00 44.05 2.40
1487 1582 1.905215 AGGGAGTCAGTCAATGGACAG 59.095 52.381 2.34 0.00 46.80 3.51
1491 1586 0.254178 CCCAGGGAGTCAGTCAATGG 59.746 60.000 0.00 0.00 33.80 3.16
1492 1587 0.987294 ACCCAGGGAGTCAGTCAATG 59.013 55.000 14.54 0.00 0.00 2.82
1513 1608 8.489676 ACAGACATTATCATCTGGTAGAAGAT 57.510 34.615 6.24 2.65 45.55 2.40
1533 1628 2.663602 CGCACTGTGAGTAATGACAGAC 59.336 50.000 16.64 7.07 41.90 3.51
1550 1645 1.310904 TACCCTGAAACAAACCGCAC 58.689 50.000 0.00 0.00 0.00 5.34
1551 1646 2.054232 TTACCCTGAAACAAACCGCA 57.946 45.000 0.00 0.00 0.00 5.69
1618 1720 7.703058 AAGGTGGAAATACAGTAAAGAATGG 57.297 36.000 0.00 0.00 0.00 3.16
1654 1757 8.224025 TCAATTGTTAGCCAAAGGGATATATGA 58.776 33.333 5.13 0.00 34.42 2.15
1656 1759 8.227507 ACTCAATTGTTAGCCAAAGGGATATAT 58.772 33.333 5.13 0.00 34.42 0.86
1657 1760 7.582719 ACTCAATTGTTAGCCAAAGGGATATA 58.417 34.615 5.13 0.00 34.42 0.86
1660 1763 4.677182 ACTCAATTGTTAGCCAAAGGGAT 58.323 39.130 5.13 0.00 36.44 3.85
1663 1766 4.559153 CCAACTCAATTGTTAGCCAAAGG 58.441 43.478 5.13 0.00 36.44 3.11
1664 1767 4.039124 ACCCAACTCAATTGTTAGCCAAAG 59.961 41.667 5.13 0.00 36.44 2.77
1665 1768 3.964031 ACCCAACTCAATTGTTAGCCAAA 59.036 39.130 5.13 0.00 36.44 3.28
1707 1817 7.238933 CCCAATTTACTAGGGTGGAGGATATTA 59.761 40.741 0.00 0.00 37.81 0.98
1782 1892 0.396435 TAGCACATATGGGGCCTTCG 59.604 55.000 7.18 0.00 0.00 3.79
1791 1901 3.479489 TGCACCTCCATTAGCACATATG 58.521 45.455 0.00 0.00 31.05 1.78
1795 1905 1.682702 CCATGCACCTCCATTAGCACA 60.683 52.381 0.00 0.00 40.14 4.57
1799 1909 1.212688 TGGTCCATGCACCTCCATTAG 59.787 52.381 7.48 0.00 37.34 1.73
1899 2009 5.940470 GTCAGGATGGATTTACAGAAACAGT 59.060 40.000 0.00 0.00 36.16 3.55
1902 2012 5.586643 GGAGTCAGGATGGATTTACAGAAAC 59.413 44.000 0.00 0.00 36.16 2.78
1949 2059 2.684881 GTCCACCAATCAATGCCAGTAG 59.315 50.000 0.00 0.00 0.00 2.57
2062 2172 2.413453 GACTTTTACCTGAGCAGCTTCG 59.587 50.000 0.00 0.00 0.00 3.79
2078 2188 6.791867 TCATAGTATGCACTACAGGACTTT 57.208 37.500 5.18 0.00 40.06 2.66
2086 2196 9.840427 AACAAACAATTTCATAGTATGCACTAC 57.160 29.630 5.18 0.00 40.06 2.73
2099 2209 6.596888 TGCCTGAAATGAAACAAACAATTTCA 59.403 30.769 8.80 8.80 46.96 2.69
2132 2242 7.321745 TCAGTCTATGATATAGCATACCACG 57.678 40.000 6.59 0.00 31.12 4.94
2155 2265 8.074370 GGAAGGTGTAGTATTTGACAAACTTTC 58.926 37.037 1.94 1.98 29.96 2.62
2175 2285 6.766429 AGACACTAATTTTAAGACGGAAGGT 58.234 36.000 0.00 0.00 0.00 3.50
2178 2288 7.095355 GCTTGAGACACTAATTTTAAGACGGAA 60.095 37.037 0.00 0.00 0.00 4.30
2192 2302 6.896021 AGTTGTACTAAGCTTGAGACACTA 57.104 37.500 9.86 2.13 0.00 2.74
2222 2332 5.526111 GTGGCTCAACTTTGTACTAACTTCA 59.474 40.000 0.00 0.00 0.00 3.02
2223 2333 5.758784 AGTGGCTCAACTTTGTACTAACTTC 59.241 40.000 0.00 0.00 0.00 3.01
2224 2334 5.681639 AGTGGCTCAACTTTGTACTAACTT 58.318 37.500 0.00 0.00 0.00 2.66
2225 2335 5.291905 AGTGGCTCAACTTTGTACTAACT 57.708 39.130 0.00 0.00 0.00 2.24
2226 2336 7.668525 ATAAGTGGCTCAACTTTGTACTAAC 57.331 36.000 5.52 0.00 40.77 2.34
2227 2337 8.685838 AAATAAGTGGCTCAACTTTGTACTAA 57.314 30.769 5.52 0.00 40.77 2.24
2228 2338 8.564574 CAAAATAAGTGGCTCAACTTTGTACTA 58.435 33.333 5.52 0.00 40.77 1.82
2229 2339 7.425606 CAAAATAAGTGGCTCAACTTTGTACT 58.574 34.615 5.52 0.00 40.77 2.73
2230 2340 6.640907 CCAAAATAAGTGGCTCAACTTTGTAC 59.359 38.462 5.52 0.00 40.77 2.90
2231 2341 6.239176 CCCAAAATAAGTGGCTCAACTTTGTA 60.239 38.462 5.52 0.00 40.77 2.41
2232 2342 5.453198 CCCAAAATAAGTGGCTCAACTTTGT 60.453 40.000 5.52 0.00 40.77 2.83
2233 2343 4.990426 CCCAAAATAAGTGGCTCAACTTTG 59.010 41.667 5.52 0.00 40.77 2.77
2234 2344 4.898861 TCCCAAAATAAGTGGCTCAACTTT 59.101 37.500 5.52 0.00 40.77 2.66
2235 2345 4.280929 GTCCCAAAATAAGTGGCTCAACTT 59.719 41.667 5.53 5.53 42.89 2.66
2243 2353 2.365582 CCTCCGTCCCAAAATAAGTGG 58.634 52.381 0.00 0.00 35.77 4.00
2337 2538 1.308998 GGCACAAGCACAACTGTACT 58.691 50.000 0.00 0.00 44.61 2.73
2367 2568 8.893727 ACCATATAAGAGCATTTCAAGTTACAC 58.106 33.333 0.00 0.00 0.00 2.90
2458 2659 2.143122 TCTTCGACAATGTTCTGCCAC 58.857 47.619 0.00 0.00 0.00 5.01
2490 2691 8.960591 ACTATAACCAAAGATGTCAATCCTTTG 58.039 33.333 14.06 14.06 34.33 2.77
2515 2716 6.127758 TGGAAACCACAAACATAGATGCATAC 60.128 38.462 0.00 0.00 0.00 2.39
2577 2780 3.630312 ACAAGACAACACGCTATTTTGGT 59.370 39.130 0.00 0.00 0.00 3.67
2587 2790 2.225491 CCCAACCATACAAGACAACACG 59.775 50.000 0.00 0.00 0.00 4.49
2592 2795 9.535170 TTAAAATAATCCCAACCATACAAGACA 57.465 29.630 0.00 0.00 0.00 3.41
2816 4185 1.742768 GGCCTAGATCCGACACTGG 59.257 63.158 0.00 0.00 0.00 4.00
2822 4191 2.524394 GCCTGGGCCTAGATCCGA 60.524 66.667 19.36 0.00 34.56 4.55
3106 4522 4.202141 CCCCATTGTATGCTGTACAATTGG 60.202 45.833 23.69 23.69 43.31 3.16
3118 4534 1.833934 GCCCAGGCCCCATTGTATG 60.834 63.158 0.00 0.00 34.56 2.39
3247 4664 2.916702 ATGAATAGGTGCATGCGAGA 57.083 45.000 14.09 0.00 0.00 4.04
3272 4689 5.957132 AGGAGTATTTTGCATGGGTGATAT 58.043 37.500 0.00 0.00 0.00 1.63
3308 4725 2.706339 ACTGACCTCTGATGATTGCC 57.294 50.000 0.00 0.00 0.00 4.52
3418 4835 5.487153 ACAACTTAATAAACACGCACACA 57.513 34.783 0.00 0.00 0.00 3.72
3466 4894 6.036470 GCTGGTAAAATAACAAGGAAGATGC 58.964 40.000 0.00 0.00 0.00 3.91
4092 5520 5.240844 GGTGTAGCTTACATGTCCTTTTGTT 59.759 40.000 0.00 0.00 41.34 2.83
4248 5676 1.364171 GTGCTCGACAGTGACCACT 59.636 57.895 0.00 0.00 43.61 4.00
4398 5826 0.943835 CGCTGGTGTCGATGTCAACA 60.944 55.000 0.00 0.00 0.00 3.33
4692 6120 1.215423 ACTGCCCCAATCCTATGAACC 59.785 52.381 0.00 0.00 0.00 3.62
4816 6251 7.201548 CGGTTATACAGCTAACGGTACAATTTT 60.202 37.037 0.00 0.00 33.31 1.82
4825 6260 5.332808 GCATTTACGGTTATACAGCTAACGG 60.333 44.000 0.00 0.00 37.71 4.44
4827 6262 6.700520 AGAGCATTTACGGTTATACAGCTAAC 59.299 38.462 0.00 0.00 0.00 2.34
4830 6265 5.277857 AGAGCATTTACGGTTATACAGCT 57.722 39.130 0.00 0.00 0.00 4.24
4961 6396 3.858503 GCATTCAACTCAAACTCCCAAGC 60.859 47.826 0.00 0.00 0.00 4.01
5116 6560 3.260740 GAGAGTTTGATCACTCAGGCAG 58.739 50.000 13.99 0.00 45.08 4.85
5201 6648 8.690840 CGTTCATAAACCTTCTTTTGATTCAAC 58.309 33.333 0.00 0.00 31.27 3.18
5208 6658 6.636850 CACTTCCGTTCATAAACCTTCTTTTG 59.363 38.462 0.00 0.00 31.27 2.44
5237 6688 0.543277 TAATGCACCCAGGAGCAGAG 59.457 55.000 14.15 0.00 44.08 3.35
5264 6715 7.172019 CAGGAATTCATTTTTGACTTTTCCCTG 59.828 37.037 7.93 0.00 0.00 4.45
5282 6733 7.790000 CATTCAACAATGTTTGTCAGGAATTC 58.210 34.615 0.00 0.00 44.59 2.17
5331 6791 5.707298 AGATGTCCACGAATGTTTTTCATCT 59.293 36.000 0.00 0.00 35.48 2.90
5380 6840 8.836413 GTTCTTAAAGGGCAATTTTTAAAAGCT 58.164 29.630 9.65 0.00 30.78 3.74
5429 6890 4.766375 TGAAGAAATATTCGTGGAGGTCC 58.234 43.478 0.00 0.00 34.02 4.46
5447 6908 7.301054 AGAACAAATAAATTCTCGTGCTGAAG 58.699 34.615 0.00 0.00 28.79 3.02
5450 6911 8.948853 TTAAGAACAAATAAATTCTCGTGCTG 57.051 30.769 0.00 0.00 34.01 4.41
5568 7033 4.082408 CGGTACATGGAGTTTCTGTACTCA 60.082 45.833 10.76 3.01 45.07 3.41
5586 7051 8.734030 GTGTACTTTATTAACGTACATCGGTAC 58.266 37.037 21.62 9.73 43.49 3.34
5587 7052 7.913297 GGTGTACTTTATTAACGTACATCGGTA 59.087 37.037 21.62 3.20 43.49 4.02
5588 7053 6.751888 GGTGTACTTTATTAACGTACATCGGT 59.248 38.462 21.62 0.00 43.49 4.69
5589 7054 6.751425 TGGTGTACTTTATTAACGTACATCGG 59.249 38.462 21.62 0.00 44.26 4.18
5590 7055 7.485913 AGTGGTGTACTTTATTAACGTACATCG 59.514 37.037 21.62 0.00 44.26 3.84
5591 7056 8.693542 AGTGGTGTACTTTATTAACGTACATC 57.306 34.615 21.62 21.33 43.49 3.06
5644 7109 1.327690 TTGCCGCGAGAGTAATCCCT 61.328 55.000 8.23 0.00 0.00 4.20
5687 7152 1.302033 GTGCTAGGCAGTGTGCTGT 60.302 57.895 0.00 0.00 44.28 4.40
5701 7166 2.309613 TCTTTGCCAACATCAAGTGCT 58.690 42.857 0.00 0.00 0.00 4.40
5750 7215 1.880027 GAGAGAAATGCGTGGGTGTTT 59.120 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.