Multiple sequence alignment - TraesCS3A01G036100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G036100 chr3A 100.000 4559 0 0 911 5469 19908628 19904070 0.000000e+00 8419.0
1 TraesCS3A01G036100 chr3A 100.000 409 0 0 1 409 19909538 19909130 0.000000e+00 756.0
2 TraesCS3A01G036100 chr3A 94.231 156 8 1 1 156 529671279 529671125 2.550000e-58 237.0
3 TraesCS3A01G036100 chr3A 100.000 113 0 0 147 259 11531188 11531076 5.550000e-50 209.0
4 TraesCS3A01G036100 chr3A 87.719 114 14 0 147 260 43729919 43729806 3.440000e-27 134.0
5 TraesCS3A01G036100 chr3B 93.329 3283 138 28 2239 5468 24248586 24251840 0.000000e+00 4774.0
6 TraesCS3A01G036100 chr3B 91.195 318 17 4 916 1223 24247101 24247417 6.550000e-114 422.0
7 TraesCS3A01G036100 chr3B 93.785 177 9 1 1244 1418 24247406 24247582 1.170000e-66 265.0
8 TraesCS3A01G036100 chr3B 85.714 63 5 3 110 172 630396807 630396749 4.570000e-06 63.9
9 TraesCS3A01G036100 chr3D 93.959 2301 99 16 3181 5469 16877884 16880156 0.000000e+00 3443.0
10 TraesCS3A01G036100 chr3D 91.786 974 61 11 911 1874 16875660 16876624 0.000000e+00 1338.0
11 TraesCS3A01G036100 chr3D 92.418 699 32 5 2496 3189 16877183 16877865 0.000000e+00 977.0
12 TraesCS3A01G036100 chr3D 93.345 556 16 5 1911 2445 16876630 16877185 0.000000e+00 802.0
13 TraesCS3A01G036100 chr3D 95.270 148 7 0 1 148 46771573 46771720 9.160000e-58 235.0
14 TraesCS3A01G036100 chr6B 100.000 148 0 0 1 148 164362355 164362208 1.940000e-69 274.0
15 TraesCS3A01G036100 chr6B 95.364 151 7 0 1 151 639991639 639991489 1.970000e-59 241.0
16 TraesCS3A01G036100 chr6B 85.207 169 23 2 8 176 392485923 392486089 7.280000e-39 172.0
17 TraesCS3A01G036100 chr5A 94.231 156 8 1 1 156 668081912 668081758 2.550000e-58 237.0
18 TraesCS3A01G036100 chr5A 88.182 110 13 0 147 256 230808680 230808789 1.240000e-26 132.0
19 TraesCS3A01G036100 chr5D 95.270 148 7 0 1 148 445106505 445106652 9.160000e-58 235.0
20 TraesCS3A01G036100 chr4A 94.702 151 8 0 1 151 537548574 537548424 9.160000e-58 235.0
21 TraesCS3A01G036100 chr4A 89.071 183 15 3 1 183 235649208 235649031 7.130000e-54 222.0
22 TraesCS3A01G036100 chr1D 93.038 158 11 0 1 158 128530620 128530463 1.180000e-56 231.0
23 TraesCS3A01G036100 chr1D 90.000 110 11 0 147 256 248885982 248886091 5.710000e-30 143.0
24 TraesCS3A01G036100 chr1A 97.753 89 2 0 147 235 371408090 371408178 2.640000e-33 154.0
25 TraesCS3A01G036100 chr1A 88.182 110 13 0 147 256 247687446 247687337 1.240000e-26 132.0
26 TraesCS3A01G036100 chr6D 90.000 110 11 0 147 256 107800950 107801059 5.710000e-30 143.0
27 TraesCS3A01G036100 chr7A 88.182 110 13 0 147 256 347095154 347095263 1.240000e-26 132.0
28 TraesCS3A01G036100 chr4B 87.500 112 14 0 147 258 39415515 39415626 4.450000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G036100 chr3A 19904070 19909538 5468 True 4587.500000 8419 100.000000 1 5469 2 chr3A.!!$R4 5468
1 TraesCS3A01G036100 chr3B 24247101 24251840 4739 False 1820.333333 4774 92.769667 916 5468 3 chr3B.!!$F1 4552
2 TraesCS3A01G036100 chr3D 16875660 16880156 4496 False 1640.000000 3443 92.877000 911 5469 4 chr3D.!!$F2 4558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.035598 TTTCGGCAGATCGAACCCAA 59.964 50.0 0.00 0.0 46.85 4.12 F
318 319 0.111253 CCCAACCAACTTCCTGAGCT 59.889 55.0 0.00 0.0 0.00 4.09 F
346 347 0.172578 ACTTACGCGCATACAGCTCA 59.827 50.0 5.73 0.0 42.61 4.26 F
360 361 0.324943 AGCTCAACCCACGTATGCTT 59.675 50.0 0.00 0.0 0.00 3.91 F
363 364 0.390603 TCAACCCACGTATGCTTCCG 60.391 55.0 0.00 0.0 0.00 4.30 F
1806 2463 0.443869 CATGCTGGACTTCCGTTTCG 59.556 55.0 0.00 0.0 39.43 3.46 F
2245 2923 0.768622 TCCACTCATCCGTTGGGTTT 59.231 50.0 0.00 0.0 36.71 3.27 F
3600 4319 0.533491 TTGAGCATTTGGATGGCTGC 59.467 50.0 0.00 0.0 33.72 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1317 1.147824 CCCTCCTGGTGCTAGCATG 59.852 63.158 22.51 13.81 0.00 4.06 R
2314 2992 1.486310 AGACTCACTGCTTCACCACAA 59.514 47.619 0.00 0.00 0.00 3.33 R
2434 3112 4.991153 TTGCCACACAAACATTGAAGTA 57.009 36.364 0.00 0.00 34.56 2.24 R
2449 3127 2.166254 CTGTGGGGATGTATTTTGCCAC 59.834 50.000 0.00 0.00 0.00 5.01 R
2468 3146 7.769507 ACAGCATTCATATTGATAGATAGGCTG 59.230 37.037 0.00 0.00 45.66 4.85 R
2856 3537 0.175760 AGCGCATGATACCGAGTTGT 59.824 50.000 11.47 0.00 0.00 3.32 R
4115 4844 0.541392 ATGTGAAGTATGGCCAGCGA 59.459 50.000 13.05 0.00 0.00 4.93 R
5441 6177 2.027837 ACCAGCCATGAATTGAAAAGGC 60.028 45.455 0.00 0.00 42.31 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.659652 AAGTCTTTTTAGAGATTCCAACGAG 57.340 36.000 0.00 0.00 0.00 4.18
30 31 6.760291 AGTCTTTTTAGAGATTCCAACGAGT 58.240 36.000 0.00 0.00 0.00 4.18
31 32 6.647067 AGTCTTTTTAGAGATTCCAACGAGTG 59.353 38.462 0.00 0.00 0.00 3.51
32 33 6.645415 GTCTTTTTAGAGATTCCAACGAGTGA 59.355 38.462 0.00 0.00 0.00 3.41
33 34 6.645415 TCTTTTTAGAGATTCCAACGAGTGAC 59.355 38.462 0.00 0.00 0.00 3.67
34 35 5.723672 TTTAGAGATTCCAACGAGTGACT 57.276 39.130 0.00 0.00 0.00 3.41
35 36 6.829229 TTTAGAGATTCCAACGAGTGACTA 57.171 37.500 0.00 0.00 0.00 2.59
36 37 4.705337 AGAGATTCCAACGAGTGACTAC 57.295 45.455 0.00 0.00 0.00 2.73
37 38 4.079970 AGAGATTCCAACGAGTGACTACA 58.920 43.478 0.00 0.00 0.00 2.74
38 39 4.707448 AGAGATTCCAACGAGTGACTACAT 59.293 41.667 0.00 0.00 0.00 2.29
39 40 5.886474 AGAGATTCCAACGAGTGACTACATA 59.114 40.000 0.00 0.00 0.00 2.29
40 41 5.892568 AGATTCCAACGAGTGACTACATAC 58.107 41.667 0.00 0.00 0.00 2.39
41 42 3.752412 TCCAACGAGTGACTACATACG 57.248 47.619 0.00 0.00 35.21 3.06
42 43 2.421073 TCCAACGAGTGACTACATACGG 59.579 50.000 0.00 0.00 34.15 4.02
43 44 2.421073 CCAACGAGTGACTACATACGGA 59.579 50.000 0.00 0.00 34.15 4.69
44 45 3.487042 CCAACGAGTGACTACATACGGAG 60.487 52.174 0.00 0.00 34.15 4.63
45 46 1.669779 ACGAGTGACTACATACGGAGC 59.330 52.381 0.00 0.00 34.15 4.70
46 47 1.669265 CGAGTGACTACATACGGAGCA 59.331 52.381 0.00 0.00 0.00 4.26
47 48 2.096980 CGAGTGACTACATACGGAGCAA 59.903 50.000 0.00 0.00 0.00 3.91
48 49 3.427098 CGAGTGACTACATACGGAGCAAA 60.427 47.826 0.00 0.00 0.00 3.68
49 50 3.846360 AGTGACTACATACGGAGCAAAC 58.154 45.455 0.00 0.00 0.00 2.93
50 51 3.510360 AGTGACTACATACGGAGCAAACT 59.490 43.478 0.00 0.00 0.00 2.66
51 52 3.612860 GTGACTACATACGGAGCAAACTG 59.387 47.826 0.00 0.00 0.00 3.16
52 53 3.508402 TGACTACATACGGAGCAAACTGA 59.492 43.478 0.00 0.00 0.00 3.41
53 54 4.106197 GACTACATACGGAGCAAACTGAG 58.894 47.826 0.00 0.00 0.00 3.35
54 55 3.510360 ACTACATACGGAGCAAACTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
55 56 4.703575 ACTACATACGGAGCAAACTGAGTA 59.296 41.667 0.00 0.00 0.00 2.59
56 57 4.530710 ACATACGGAGCAAACTGAGTAA 57.469 40.909 0.00 0.00 0.00 2.24
57 58 4.890088 ACATACGGAGCAAACTGAGTAAA 58.110 39.130 0.00 0.00 0.00 2.01
58 59 4.689345 ACATACGGAGCAAACTGAGTAAAC 59.311 41.667 0.00 0.00 0.00 2.01
59 60 2.490991 ACGGAGCAAACTGAGTAAACC 58.509 47.619 0.00 0.00 0.00 3.27
60 61 2.104281 ACGGAGCAAACTGAGTAAACCT 59.896 45.455 0.00 0.00 0.00 3.50
61 62 2.480419 CGGAGCAAACTGAGTAAACCTG 59.520 50.000 0.00 0.00 0.00 4.00
62 63 2.226674 GGAGCAAACTGAGTAAACCTGC 59.773 50.000 0.00 0.00 0.00 4.85
63 64 2.878406 GAGCAAACTGAGTAAACCTGCA 59.122 45.455 0.00 0.00 0.00 4.41
64 65 2.618709 AGCAAACTGAGTAAACCTGCAC 59.381 45.455 0.00 0.00 0.00 4.57
65 66 2.618709 GCAAACTGAGTAAACCTGCACT 59.381 45.455 0.00 0.00 0.00 4.40
66 67 3.304057 GCAAACTGAGTAAACCTGCACTC 60.304 47.826 0.00 0.00 41.31 3.51
67 68 4.130118 CAAACTGAGTAAACCTGCACTCT 58.870 43.478 3.65 0.00 41.46 3.24
68 69 5.297547 CAAACTGAGTAAACCTGCACTCTA 58.702 41.667 3.65 0.00 41.46 2.43
69 70 5.546621 AACTGAGTAAACCTGCACTCTAA 57.453 39.130 3.65 0.00 41.46 2.10
70 71 5.546621 ACTGAGTAAACCTGCACTCTAAA 57.453 39.130 3.65 0.00 41.46 1.85
71 72 5.925509 ACTGAGTAAACCTGCACTCTAAAA 58.074 37.500 3.65 0.00 41.46 1.52
72 73 6.534634 ACTGAGTAAACCTGCACTCTAAAAT 58.465 36.000 3.65 0.00 41.46 1.82
73 74 7.676947 ACTGAGTAAACCTGCACTCTAAAATA 58.323 34.615 3.65 0.00 41.46 1.40
74 75 8.322091 ACTGAGTAAACCTGCACTCTAAAATAT 58.678 33.333 3.65 0.00 41.46 1.28
75 76 8.492673 TGAGTAAACCTGCACTCTAAAATATG 57.507 34.615 3.65 0.00 41.46 1.78
76 77 8.100791 TGAGTAAACCTGCACTCTAAAATATGT 58.899 33.333 3.65 0.00 41.46 2.29
77 78 8.494016 AGTAAACCTGCACTCTAAAATATGTC 57.506 34.615 0.00 0.00 0.00 3.06
78 79 8.322091 AGTAAACCTGCACTCTAAAATATGTCT 58.678 33.333 0.00 0.00 0.00 3.41
79 80 9.595823 GTAAACCTGCACTCTAAAATATGTCTA 57.404 33.333 0.00 0.00 0.00 2.59
80 81 8.494016 AAACCTGCACTCTAAAATATGTCTAC 57.506 34.615 0.00 0.00 0.00 2.59
81 82 7.182817 ACCTGCACTCTAAAATATGTCTACA 57.817 36.000 0.00 0.00 0.00 2.74
82 83 7.796054 ACCTGCACTCTAAAATATGTCTACAT 58.204 34.615 0.63 0.63 40.22 2.29
83 84 8.924303 ACCTGCACTCTAAAATATGTCTACATA 58.076 33.333 5.33 5.33 42.38 2.29
84 85 9.197694 CCTGCACTCTAAAATATGTCTACATAC 57.802 37.037 4.98 0.00 41.15 2.39
85 86 9.750125 CTGCACTCTAAAATATGTCTACATACA 57.250 33.333 4.98 0.00 41.15 2.29
109 110 9.607988 ACATCCGTATGTTATAGTCAATTTGAA 57.392 29.630 0.00 0.00 44.07 2.69
142 143 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
143 144 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
144 145 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
145 146 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
146 147 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
147 148 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
148 149 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
149 150 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
150 151 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
151 152 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
152 153 2.317973 AGGAACGGAGGGAGTATAAGC 58.682 52.381 0.00 0.00 0.00 3.09
153 154 2.091222 AGGAACGGAGGGAGTATAAGCT 60.091 50.000 0.00 0.00 0.00 3.74
154 155 3.139770 AGGAACGGAGGGAGTATAAGCTA 59.860 47.826 0.00 0.00 0.00 3.32
155 156 3.506844 GGAACGGAGGGAGTATAAGCTAG 59.493 52.174 0.00 0.00 0.00 3.42
156 157 3.880168 ACGGAGGGAGTATAAGCTAGT 57.120 47.619 0.00 0.00 0.00 2.57
157 158 4.181799 ACGGAGGGAGTATAAGCTAGTT 57.818 45.455 0.00 0.00 0.00 2.24
158 159 4.544683 ACGGAGGGAGTATAAGCTAGTTT 58.455 43.478 0.00 0.00 0.00 2.66
159 160 4.961099 ACGGAGGGAGTATAAGCTAGTTTT 59.039 41.667 0.00 0.00 0.00 2.43
160 161 6.131961 ACGGAGGGAGTATAAGCTAGTTTTA 58.868 40.000 0.00 0.00 0.00 1.52
161 162 6.040278 ACGGAGGGAGTATAAGCTAGTTTTAC 59.960 42.308 0.00 1.15 0.00 2.01
162 163 6.445475 GGAGGGAGTATAAGCTAGTTTTACG 58.555 44.000 0.00 0.00 30.23 3.18
163 164 6.264067 GGAGGGAGTATAAGCTAGTTTTACGA 59.736 42.308 0.00 0.00 30.23 3.43
164 165 7.201857 GGAGGGAGTATAAGCTAGTTTTACGAA 60.202 40.741 0.00 0.00 30.23 3.85
165 166 8.071177 AGGGAGTATAAGCTAGTTTTACGAAA 57.929 34.615 0.00 0.00 30.23 3.46
166 167 8.534496 AGGGAGTATAAGCTAGTTTTACGAAAA 58.466 33.333 0.00 0.00 30.23 2.29
183 184 6.937886 ACGAAAACAACAACTTAAAACTGG 57.062 33.333 0.00 0.00 0.00 4.00
184 185 6.448852 ACGAAAACAACAACTTAAAACTGGT 58.551 32.000 0.00 0.00 0.00 4.00
185 186 6.924612 ACGAAAACAACAACTTAAAACTGGTT 59.075 30.769 0.00 0.00 0.00 3.67
186 187 7.438757 ACGAAAACAACAACTTAAAACTGGTTT 59.561 29.630 0.00 0.00 0.00 3.27
187 188 8.277018 CGAAAACAACAACTTAAAACTGGTTTT 58.723 29.630 14.51 14.51 44.16 2.43
188 189 9.588774 GAAAACAACAACTTAAAACTGGTTTTC 57.411 29.630 13.67 0.00 42.04 2.29
189 190 7.661127 AACAACAACTTAAAACTGGTTTTCC 57.339 32.000 13.67 0.00 41.39 3.13
190 191 6.999950 ACAACAACTTAAAACTGGTTTTCCT 58.000 32.000 13.67 0.00 41.39 3.36
191 192 8.124808 ACAACAACTTAAAACTGGTTTTCCTA 57.875 30.769 13.67 2.65 41.39 2.94
192 193 8.586744 ACAACAACTTAAAACTGGTTTTCCTAA 58.413 29.630 13.67 4.22 41.39 2.69
193 194 9.425577 CAACAACTTAAAACTGGTTTTCCTAAA 57.574 29.630 13.67 3.93 41.39 1.85
194 195 9.999660 AACAACTTAAAACTGGTTTTCCTAAAA 57.000 25.926 13.67 3.62 41.39 1.52
195 196 9.999660 ACAACTTAAAACTGGTTTTCCTAAAAA 57.000 25.926 13.67 3.03 41.39 1.94
198 199 9.826574 ACTTAAAACTGGTTTTCCTAAAAATCC 57.173 29.630 13.67 0.00 41.39 3.01
201 202 7.914427 AAACTGGTTTTCCTAAAAATCCTCT 57.086 32.000 0.00 0.00 41.38 3.69
202 203 7.914427 AACTGGTTTTCCTAAAAATCCTCTT 57.086 32.000 0.00 0.00 41.38 2.85
203 204 9.429109 AAACTGGTTTTCCTAAAAATCCTCTTA 57.571 29.630 0.00 0.00 41.38 2.10
204 205 9.429109 AACTGGTTTTCCTAAAAATCCTCTTAA 57.571 29.630 0.00 0.00 41.38 1.85
205 206 9.429109 ACTGGTTTTCCTAAAAATCCTCTTAAA 57.571 29.630 0.00 0.00 41.38 1.52
211 212 9.429109 TTTCCTAAAAATCCTCTTAAAACTGGT 57.571 29.630 0.00 0.00 0.00 4.00
212 213 9.429109 TTCCTAAAAATCCTCTTAAAACTGGTT 57.571 29.630 0.00 0.00 0.00 3.67
213 214 9.429109 TCCTAAAAATCCTCTTAAAACTGGTTT 57.571 29.630 0.00 0.00 0.00 3.27
216 217 8.958119 AAAAATCCTCTTAAAACTGGTTTTCC 57.042 30.769 13.67 0.00 41.39 3.13
217 218 7.914427 AAATCCTCTTAAAACTGGTTTTCCT 57.086 32.000 13.67 0.00 41.39 3.36
218 219 9.429109 AAAATCCTCTTAAAACTGGTTTTCCTA 57.571 29.630 13.67 2.65 41.39 2.94
219 220 9.429109 AAATCCTCTTAAAACTGGTTTTCCTAA 57.571 29.630 13.67 4.22 41.39 2.69
220 221 9.429109 AATCCTCTTAAAACTGGTTTTCCTAAA 57.571 29.630 13.67 3.93 41.39 1.85
221 222 8.826293 TCCTCTTAAAACTGGTTTTCCTAAAA 57.174 30.769 13.67 3.62 41.39 1.52
240 241 9.476928 TCCTAAAACTACTCTCAAATACTAGCT 57.523 33.333 0.00 0.00 0.00 3.32
245 246 8.998277 AACTACTCTCAAATACTAGCTATCCA 57.002 34.615 0.00 0.00 0.00 3.41
246 247 8.998277 ACTACTCTCAAATACTAGCTATCCAA 57.002 34.615 0.00 0.00 0.00 3.53
247 248 9.422681 ACTACTCTCAAATACTAGCTATCCAAA 57.577 33.333 0.00 0.00 0.00 3.28
248 249 9.685828 CTACTCTCAAATACTAGCTATCCAAAC 57.314 37.037 0.00 0.00 0.00 2.93
249 250 8.079211 ACTCTCAAATACTAGCTATCCAAACA 57.921 34.615 0.00 0.00 0.00 2.83
250 251 8.540388 ACTCTCAAATACTAGCTATCCAAACAA 58.460 33.333 0.00 0.00 0.00 2.83
251 252 8.718102 TCTCAAATACTAGCTATCCAAACAAC 57.282 34.615 0.00 0.00 0.00 3.32
252 253 7.769044 TCTCAAATACTAGCTATCCAAACAACC 59.231 37.037 0.00 0.00 0.00 3.77
253 254 7.398829 TCAAATACTAGCTATCCAAACAACCA 58.601 34.615 0.00 0.00 0.00 3.67
254 255 7.335924 TCAAATACTAGCTATCCAAACAACCAC 59.664 37.037 0.00 0.00 0.00 4.16
255 256 4.910458 ACTAGCTATCCAAACAACCACT 57.090 40.909 0.00 0.00 0.00 4.00
256 257 7.670605 ATACTAGCTATCCAAACAACCACTA 57.329 36.000 0.00 0.00 0.00 2.74
257 258 6.368779 ACTAGCTATCCAAACAACCACTAA 57.631 37.500 0.00 0.00 0.00 2.24
258 259 6.775708 ACTAGCTATCCAAACAACCACTAAA 58.224 36.000 0.00 0.00 0.00 1.85
259 260 7.228590 ACTAGCTATCCAAACAACCACTAAAA 58.771 34.615 0.00 0.00 0.00 1.52
260 261 6.969993 AGCTATCCAAACAACCACTAAAAA 57.030 33.333 0.00 0.00 0.00 1.94
288 289 8.480643 AGTACTCCTCAAAATTAGTGATTTCG 57.519 34.615 0.00 0.00 36.96 3.46
289 290 6.743575 ACTCCTCAAAATTAGTGATTTCGG 57.256 37.500 0.00 0.00 36.96 4.30
290 291 5.123979 ACTCCTCAAAATTAGTGATTTCGGC 59.876 40.000 0.00 0.00 36.96 5.54
291 292 5.007034 TCCTCAAAATTAGTGATTTCGGCA 58.993 37.500 0.00 0.00 36.96 5.69
292 293 5.123820 TCCTCAAAATTAGTGATTTCGGCAG 59.876 40.000 0.00 0.00 36.96 4.85
293 294 5.123820 CCTCAAAATTAGTGATTTCGGCAGA 59.876 40.000 0.00 0.00 36.96 4.26
294 295 6.183360 CCTCAAAATTAGTGATTTCGGCAGAT 60.183 38.462 0.00 0.00 36.96 2.90
295 296 6.785191 TCAAAATTAGTGATTTCGGCAGATC 58.215 36.000 0.00 0.00 36.96 2.75
296 297 5.409643 AAATTAGTGATTTCGGCAGATCG 57.590 39.130 0.00 0.00 32.49 3.69
297 298 3.793797 TTAGTGATTTCGGCAGATCGA 57.206 42.857 0.00 0.00 37.38 3.59
298 299 2.672961 AGTGATTTCGGCAGATCGAA 57.327 45.000 0.00 0.00 45.77 3.71
299 300 2.271800 AGTGATTTCGGCAGATCGAAC 58.728 47.619 0.00 0.00 46.85 3.95
300 301 1.327764 GTGATTTCGGCAGATCGAACC 59.672 52.381 0.00 0.00 46.85 3.62
301 302 0.938008 GATTTCGGCAGATCGAACCC 59.062 55.000 0.00 0.00 46.85 4.11
302 303 0.251916 ATTTCGGCAGATCGAACCCA 59.748 50.000 0.00 0.00 46.85 4.51
303 304 0.035598 TTTCGGCAGATCGAACCCAA 59.964 50.000 0.00 0.00 46.85 4.12
304 305 0.672401 TTCGGCAGATCGAACCCAAC 60.672 55.000 0.00 0.00 43.12 3.77
305 306 2.106683 CGGCAGATCGAACCCAACC 61.107 63.158 0.00 0.00 0.00 3.77
306 307 1.002624 GGCAGATCGAACCCAACCA 60.003 57.895 0.00 0.00 0.00 3.67
307 308 0.608035 GGCAGATCGAACCCAACCAA 60.608 55.000 0.00 0.00 0.00 3.67
308 309 0.521735 GCAGATCGAACCCAACCAAC 59.478 55.000 0.00 0.00 0.00 3.77
309 310 1.882352 GCAGATCGAACCCAACCAACT 60.882 52.381 0.00 0.00 0.00 3.16
310 311 2.504367 CAGATCGAACCCAACCAACTT 58.496 47.619 0.00 0.00 0.00 2.66
311 312 2.484264 CAGATCGAACCCAACCAACTTC 59.516 50.000 0.00 0.00 0.00 3.01
312 313 1.810755 GATCGAACCCAACCAACTTCC 59.189 52.381 0.00 0.00 0.00 3.46
313 314 0.841289 TCGAACCCAACCAACTTCCT 59.159 50.000 0.00 0.00 0.00 3.36
314 315 0.951558 CGAACCCAACCAACTTCCTG 59.048 55.000 0.00 0.00 0.00 3.86
315 316 1.476110 CGAACCCAACCAACTTCCTGA 60.476 52.381 0.00 0.00 0.00 3.86
316 317 2.230660 GAACCCAACCAACTTCCTGAG 58.769 52.381 0.00 0.00 0.00 3.35
317 318 0.178990 ACCCAACCAACTTCCTGAGC 60.179 55.000 0.00 0.00 0.00 4.26
318 319 0.111253 CCCAACCAACTTCCTGAGCT 59.889 55.000 0.00 0.00 0.00 4.09
319 320 1.351017 CCCAACCAACTTCCTGAGCTA 59.649 52.381 0.00 0.00 0.00 3.32
320 321 2.616510 CCCAACCAACTTCCTGAGCTAG 60.617 54.545 0.00 0.00 0.00 3.42
321 322 2.303022 CCAACCAACTTCCTGAGCTAGA 59.697 50.000 0.00 0.00 0.00 2.43
322 323 3.594134 CAACCAACTTCCTGAGCTAGAG 58.406 50.000 0.00 0.00 0.00 2.43
323 324 3.176924 ACCAACTTCCTGAGCTAGAGA 57.823 47.619 0.00 0.00 0.00 3.10
324 325 3.096092 ACCAACTTCCTGAGCTAGAGAG 58.904 50.000 0.00 0.00 0.00 3.20
325 326 3.245443 ACCAACTTCCTGAGCTAGAGAGA 60.245 47.826 0.00 0.00 0.00 3.10
326 327 3.381272 CCAACTTCCTGAGCTAGAGAGAG 59.619 52.174 0.00 0.00 0.00 3.20
327 328 4.269183 CAACTTCCTGAGCTAGAGAGAGA 58.731 47.826 0.00 0.00 0.00 3.10
328 329 3.886123 ACTTCCTGAGCTAGAGAGAGAC 58.114 50.000 0.00 0.00 0.00 3.36
329 330 3.523564 ACTTCCTGAGCTAGAGAGAGACT 59.476 47.826 0.00 0.00 0.00 3.24
330 331 4.018415 ACTTCCTGAGCTAGAGAGAGACTT 60.018 45.833 0.00 0.00 0.00 3.01
331 332 5.190925 ACTTCCTGAGCTAGAGAGAGACTTA 59.809 44.000 0.00 0.00 0.00 2.24
332 333 5.031066 TCCTGAGCTAGAGAGAGACTTAC 57.969 47.826 0.00 0.00 0.00 2.34
333 334 3.807622 CCTGAGCTAGAGAGAGACTTACG 59.192 52.174 0.00 0.00 0.00 3.18
334 335 3.199677 TGAGCTAGAGAGAGACTTACGC 58.800 50.000 0.00 0.00 0.00 4.42
335 336 2.206750 AGCTAGAGAGAGACTTACGCG 58.793 52.381 3.53 3.53 0.00 6.01
336 337 1.333435 GCTAGAGAGAGACTTACGCGC 60.333 57.143 5.73 0.00 0.00 6.86
337 338 1.934525 CTAGAGAGAGACTTACGCGCA 59.065 52.381 5.73 0.00 0.00 6.09
338 339 1.384525 AGAGAGAGACTTACGCGCAT 58.615 50.000 5.73 0.00 0.00 4.73
339 340 2.562635 AGAGAGAGACTTACGCGCATA 58.437 47.619 5.73 0.00 0.00 3.14
340 341 2.288458 AGAGAGAGACTTACGCGCATAC 59.712 50.000 5.73 0.00 0.00 2.39
341 342 2.014857 AGAGAGACTTACGCGCATACA 58.985 47.619 5.73 0.00 0.00 2.29
342 343 2.032302 AGAGAGACTTACGCGCATACAG 59.968 50.000 5.73 0.00 0.00 2.74
343 344 0.847035 GAGACTTACGCGCATACAGC 59.153 55.000 5.73 0.00 40.87 4.40
344 345 0.456221 AGACTTACGCGCATACAGCT 59.544 50.000 5.73 0.00 42.61 4.24
345 346 0.847035 GACTTACGCGCATACAGCTC 59.153 55.000 5.73 0.00 42.61 4.09
346 347 0.172578 ACTTACGCGCATACAGCTCA 59.827 50.000 5.73 0.00 42.61 4.26
347 348 1.277326 CTTACGCGCATACAGCTCAA 58.723 50.000 5.73 0.00 42.61 3.02
348 349 0.996462 TTACGCGCATACAGCTCAAC 59.004 50.000 5.73 0.00 42.61 3.18
349 350 0.804544 TACGCGCATACAGCTCAACC 60.805 55.000 5.73 0.00 42.61 3.77
350 351 2.813179 CGCGCATACAGCTCAACCC 61.813 63.158 8.75 0.00 42.61 4.11
351 352 1.745115 GCGCATACAGCTCAACCCA 60.745 57.895 0.30 0.00 42.61 4.51
352 353 1.982073 GCGCATACAGCTCAACCCAC 61.982 60.000 0.30 0.00 42.61 4.61
353 354 1.695893 CGCATACAGCTCAACCCACG 61.696 60.000 0.00 0.00 42.61 4.94
354 355 0.673644 GCATACAGCTCAACCCACGT 60.674 55.000 0.00 0.00 41.15 4.49
355 356 1.404986 GCATACAGCTCAACCCACGTA 60.405 52.381 0.00 0.00 41.15 3.57
356 357 2.741878 GCATACAGCTCAACCCACGTAT 60.742 50.000 0.00 0.00 41.15 3.06
357 358 2.665649 TACAGCTCAACCCACGTATG 57.334 50.000 0.00 0.00 0.00 2.39
358 359 0.673644 ACAGCTCAACCCACGTATGC 60.674 55.000 0.00 0.00 0.00 3.14
359 360 0.391661 CAGCTCAACCCACGTATGCT 60.392 55.000 0.00 0.00 0.00 3.79
360 361 0.324943 AGCTCAACCCACGTATGCTT 59.675 50.000 0.00 0.00 0.00 3.91
361 362 0.727398 GCTCAACCCACGTATGCTTC 59.273 55.000 0.00 0.00 0.00 3.86
362 363 1.369625 CTCAACCCACGTATGCTTCC 58.630 55.000 0.00 0.00 0.00 3.46
363 364 0.390603 TCAACCCACGTATGCTTCCG 60.391 55.000 0.00 0.00 0.00 4.30
364 365 1.078708 AACCCACGTATGCTTCCGG 60.079 57.895 0.00 0.00 0.00 5.14
365 366 2.895372 CCCACGTATGCTTCCGGC 60.895 66.667 0.00 0.00 42.22 6.13
366 367 2.895372 CCACGTATGCTTCCGGCC 60.895 66.667 0.00 0.00 40.92 6.13
367 368 2.895372 CACGTATGCTTCCGGCCC 60.895 66.667 0.00 0.00 40.92 5.80
368 369 4.524318 ACGTATGCTTCCGGCCCG 62.524 66.667 0.00 0.00 40.92 6.13
375 376 4.851179 CTTCCGGCCCGCCTAACC 62.851 72.222 0.00 0.00 0.00 2.85
379 380 4.404098 CGGCCCGCCTAACCTGTT 62.404 66.667 3.84 0.00 0.00 3.16
380 381 2.437895 GGCCCGCCTAACCTGTTC 60.438 66.667 0.00 0.00 0.00 3.18
381 382 2.437895 GCCCGCCTAACCTGTTCC 60.438 66.667 0.00 0.00 0.00 3.62
382 383 2.271173 CCCGCCTAACCTGTTCCC 59.729 66.667 0.00 0.00 0.00 3.97
383 384 2.271173 CCGCCTAACCTGTTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
384 385 2.125269 CGCCTAACCTGTTCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
385 386 2.437895 GCCTAACCTGTTCCCCGC 60.438 66.667 0.00 0.00 0.00 6.13
386 387 2.271173 CCTAACCTGTTCCCCGCC 59.729 66.667 0.00 0.00 0.00 6.13
387 388 2.298661 CCTAACCTGTTCCCCGCCT 61.299 63.158 0.00 0.00 0.00 5.52
388 389 1.221021 CTAACCTGTTCCCCGCCTC 59.779 63.158 0.00 0.00 0.00 4.70
389 390 2.573609 CTAACCTGTTCCCCGCCTCG 62.574 65.000 0.00 0.00 0.00 4.63
391 392 4.148825 CCTGTTCCCCGCCTCGAG 62.149 72.222 5.13 5.13 0.00 4.04
392 393 3.068691 CTGTTCCCCGCCTCGAGA 61.069 66.667 15.71 0.00 0.00 4.04
393 394 2.363795 TGTTCCCCGCCTCGAGAT 60.364 61.111 15.71 0.00 0.00 2.75
394 395 1.076559 TGTTCCCCGCCTCGAGATA 60.077 57.895 15.71 0.00 0.00 1.98
395 396 0.469331 TGTTCCCCGCCTCGAGATAT 60.469 55.000 15.71 0.00 0.00 1.63
396 397 0.680061 GTTCCCCGCCTCGAGATATT 59.320 55.000 15.71 0.00 0.00 1.28
397 398 1.070289 GTTCCCCGCCTCGAGATATTT 59.930 52.381 15.71 0.00 0.00 1.40
398 399 1.420430 TCCCCGCCTCGAGATATTTT 58.580 50.000 15.71 0.00 0.00 1.82
399 400 1.343465 TCCCCGCCTCGAGATATTTTC 59.657 52.381 15.71 0.00 0.00 2.29
400 401 1.070134 CCCCGCCTCGAGATATTTTCA 59.930 52.381 15.71 0.00 0.00 2.69
401 402 2.289694 CCCCGCCTCGAGATATTTTCAT 60.290 50.000 15.71 0.00 0.00 2.57
402 403 3.403038 CCCGCCTCGAGATATTTTCATT 58.597 45.455 15.71 0.00 0.00 2.57
403 404 3.433615 CCCGCCTCGAGATATTTTCATTC 59.566 47.826 15.71 0.00 0.00 2.67
404 405 3.433615 CCGCCTCGAGATATTTTCATTCC 59.566 47.826 15.71 0.00 0.00 3.01
405 406 3.433615 CGCCTCGAGATATTTTCATTCCC 59.566 47.826 15.71 0.00 0.00 3.97
406 407 3.753797 GCCTCGAGATATTTTCATTCCCC 59.246 47.826 15.71 0.00 0.00 4.81
407 408 4.327680 CCTCGAGATATTTTCATTCCCCC 58.672 47.826 15.71 0.00 0.00 5.40
941 942 1.032794 CCCTCCGATTCGAGATGACA 58.967 55.000 7.83 0.00 30.97 3.58
946 947 1.143305 CGATTCGAGATGACATGCCC 58.857 55.000 0.00 0.00 0.00 5.36
947 948 1.517242 GATTCGAGATGACATGCCCC 58.483 55.000 0.00 0.00 0.00 5.80
1084 1095 2.192187 GGAGTAGGTACCCCGCTCG 61.192 68.421 8.74 0.00 38.03 5.03
1137 1150 2.726066 GCTGCAGTTTTCAGTATCGTGC 60.726 50.000 16.64 0.00 34.21 5.34
1144 1157 2.073117 TTCAGTATCGTGCTTCGCAA 57.927 45.000 0.00 0.00 41.47 4.85
1173 1186 1.864862 CTCTGTGAACCGCTGCAAG 59.135 57.895 0.00 0.00 0.00 4.01
1216 1230 4.700213 TGACTTTTAGTTAAGAGGCATGCC 59.300 41.667 30.12 30.12 31.27 4.40
1240 1254 2.548480 GTGGCCTAGATGTTAATTCCGC 59.452 50.000 3.32 0.00 0.00 5.54
1262 1276 5.644644 GCTTCATGCTATGTTGTTTAGCTT 58.355 37.500 0.00 0.00 42.08 3.74
1301 1317 7.820872 TGGTACTGTAATTGTAACCTTCTTAGC 59.179 37.037 0.00 0.00 0.00 3.09
1317 1333 0.755079 TAGCATGCTAGCACCAGGAG 59.245 55.000 23.52 7.13 36.85 3.69
1433 1449 8.870160 TTTACCAGTTTCTTGACAATGAATTG 57.130 30.769 1.45 1.45 43.26 2.32
1458 1474 3.424433 GCTTGGTTATGTGTAAGCGTGTC 60.424 47.826 0.00 0.00 40.35 3.67
1481 1497 5.412594 TCTTTCTGCAGTATTAGCAAAGTGG 59.587 40.000 14.67 0.00 42.17 4.00
1498 1514 6.208644 CAAAGTGGATCTAAGTTGTTGTTGG 58.791 40.000 0.00 0.00 0.00 3.77
1517 1533 1.202770 GGCCAGGTGTTGTTCTACACT 60.203 52.381 14.55 2.23 45.98 3.55
1519 1535 2.548480 GCCAGGTGTTGTTCTACACTTC 59.452 50.000 14.55 2.87 45.98 3.01
1527 1543 9.841295 AGGTGTTGTTCTACACTTCTAAATTAA 57.159 29.630 14.55 0.00 45.98 1.40
1655 1671 4.526970 AGGCACTTAATATGGGTCAACAG 58.473 43.478 0.00 0.00 27.25 3.16
1663 1679 5.762179 AATATGGGTCAACAGAACTCTGA 57.238 39.130 13.61 0.00 46.59 3.27
1668 1684 4.103153 TGGGTCAACAGAACTCTGATTTCT 59.897 41.667 13.61 4.60 46.59 2.52
1676 1692 9.525409 CAACAGAACTCTGATTTCTTTGAAAAT 57.475 29.630 13.61 0.00 46.59 1.82
1745 2397 7.519927 TGGTAATAGACAAAACCTTGGTAGTT 58.480 34.615 0.00 0.00 36.82 2.24
1758 2410 5.936372 ACCTTGGTAGTTTTTCCGAAGTATC 59.064 40.000 0.00 0.00 0.00 2.24
1790 2442 9.409312 TCTTTAGTTACAAACAATGCATTCATG 57.591 29.630 9.53 11.07 32.23 3.07
1806 2463 0.443869 CATGCTGGACTTCCGTTTCG 59.556 55.000 0.00 0.00 39.43 3.46
1874 2531 5.598417 TCGATATCTGTCAAGAGGAAATGGA 59.402 40.000 0.34 0.00 35.37 3.41
1875 2532 6.098266 TCGATATCTGTCAAGAGGAAATGGAA 59.902 38.462 0.34 0.00 35.37 3.53
1876 2533 6.201806 CGATATCTGTCAAGAGGAAATGGAAC 59.798 42.308 0.34 0.00 35.37 3.62
1877 2534 5.246981 ATCTGTCAAGAGGAAATGGAACA 57.753 39.130 0.00 0.00 38.45 3.18
1879 2536 6.037274 ATCTGTCAAGAGGAAATGGAACACC 61.037 44.000 0.00 0.00 37.12 4.16
1880 2537 8.391991 ATCTGTCAAGAGGAAATGGAACACCA 62.392 42.308 0.00 0.00 37.12 4.17
1881 2538 9.607827 ATCTGTCAAGAGGAAATGGAACACCAT 62.608 40.741 0.00 0.00 39.79 3.55
1891 2548 3.025322 TGGAACACCATTTCCTTGTGT 57.975 42.857 3.66 0.00 44.89 3.72
1897 2554 5.200368 ACACCATTTCCTTGTGTTTGATC 57.800 39.130 0.00 0.00 40.12 2.92
1898 2555 4.895297 ACACCATTTCCTTGTGTTTGATCT 59.105 37.500 0.00 0.00 40.12 2.75
1899 2556 5.221303 ACACCATTTCCTTGTGTTTGATCTG 60.221 40.000 0.00 0.00 40.12 2.90
1900 2557 4.240096 CCATTTCCTTGTGTTTGATCTGC 58.760 43.478 0.00 0.00 0.00 4.26
1901 2558 4.262121 CCATTTCCTTGTGTTTGATCTGCA 60.262 41.667 0.00 0.00 0.00 4.41
1902 2559 5.475719 CATTTCCTTGTGTTTGATCTGCAT 58.524 37.500 0.00 0.00 0.00 3.96
1903 2560 5.534207 TTTCCTTGTGTTTGATCTGCATT 57.466 34.783 0.00 0.00 0.00 3.56
1904 2561 5.534207 TTCCTTGTGTTTGATCTGCATTT 57.466 34.783 0.00 0.00 0.00 2.32
1905 2562 4.873817 TCCTTGTGTTTGATCTGCATTTG 58.126 39.130 0.00 0.00 0.00 2.32
1906 2563 3.430895 CCTTGTGTTTGATCTGCATTTGC 59.569 43.478 0.00 0.00 42.50 3.68
1907 2564 4.304110 CTTGTGTTTGATCTGCATTTGCT 58.696 39.130 3.94 0.00 42.66 3.91
1908 2565 3.904571 TGTGTTTGATCTGCATTTGCTC 58.095 40.909 3.94 0.00 42.66 4.26
1909 2566 3.570975 TGTGTTTGATCTGCATTTGCTCT 59.429 39.130 3.94 0.00 42.66 4.09
1920 2577 2.810274 GCATTTGCTCTCAAGTGTCAGA 59.190 45.455 0.00 0.00 40.66 3.27
1942 2599 8.321353 TCAGAGTATTACACCTTTTGATCATGT 58.679 33.333 0.00 0.00 0.00 3.21
1945 2602 8.964476 AGTATTACACCTTTTGATCATGTAGG 57.036 34.615 13.76 13.76 0.00 3.18
1990 2647 7.088905 GCAGATGACATCTTTGAAAATGTTCT 58.911 34.615 15.50 5.20 37.58 3.01
1999 2656 9.557338 CATCTTTGAAAATGTTCTGATCTCTTC 57.443 33.333 0.00 0.00 34.60 2.87
2050 2707 6.808704 GCTCCTTCCTGATTTTGAATGTTAAC 59.191 38.462 0.00 0.00 0.00 2.01
2114 2787 9.797642 TGGCATATATTTGATGTTACTTCTGAT 57.202 29.630 0.00 0.00 0.00 2.90
2153 2826 2.878406 TCAAGTTTGGCTAGTTGAGTGC 59.122 45.455 6.42 0.00 33.64 4.40
2245 2923 0.768622 TCCACTCATCCGTTGGGTTT 59.231 50.000 0.00 0.00 36.71 3.27
2468 3146 2.094234 GTGTGGCAAAATACATCCCCAC 60.094 50.000 0.00 0.00 42.24 4.61
2494 3172 7.769507 CAGCCTATCTATCAATATGAATGCTGT 59.230 37.037 0.00 0.00 0.00 4.40
2637 3318 5.292834 GCATATCATGGACCATGTCTTATCG 59.707 44.000 29.44 18.78 41.98 2.92
2640 3321 4.948847 TCATGGACCATGTCTTATCGAAG 58.051 43.478 29.44 4.25 41.98 3.79
2649 3330 6.812160 ACCATGTCTTATCGAAGTGAACTAAC 59.188 38.462 0.00 0.00 34.03 2.34
2666 3347 9.786105 GTGAACTAACTTCTATAAGTAGGTGAC 57.214 37.037 0.00 0.00 45.37 3.67
2670 3351 8.334734 ACTAACTTCTATAAGTAGGTGACAGGA 58.665 37.037 0.00 0.00 45.37 3.86
2683 3364 3.270877 GTGACAGGACTTGTTGAACACT 58.729 45.455 0.00 0.00 41.05 3.55
2694 3375 3.857052 TGTTGAACACTCGTTGTCTCTT 58.143 40.909 0.00 0.00 37.51 2.85
2752 3433 8.996988 TTTGTCATGTACTAACGAAAAACATC 57.003 30.769 0.00 0.00 0.00 3.06
2760 3441 8.316214 TGTACTAACGAAAAACATCCCTCTATT 58.684 33.333 0.00 0.00 0.00 1.73
2805 3486 4.616553 TGCCTATTACCAAGTACCTCTGA 58.383 43.478 0.00 0.00 0.00 3.27
2856 3537 7.820386 TCATTGTTCTTTAGTATCTTACCGCAA 59.180 33.333 0.00 0.00 0.00 4.85
2872 3553 1.267532 CGCAACAACTCGGTATCATGC 60.268 52.381 0.00 0.00 0.00 4.06
2879 3560 2.150809 CTCGGTATCATGCGCTTGCG 62.151 60.000 17.84 14.86 43.34 4.85
3127 3810 3.822735 CTCATTCTGGAGTTCAAAAGGCA 59.177 43.478 0.00 0.00 0.00 4.75
3175 3858 7.272244 AGTAAATATAACAAAAATGGGCCTGC 58.728 34.615 4.53 0.00 0.00 4.85
3184 3867 5.473162 ACAAAAATGGGCCTGCTTTATTTTC 59.527 36.000 4.53 0.00 31.78 2.29
3197 3907 7.922811 CCTGCTTTATTTTCCAGAAATCATACC 59.077 37.037 0.00 0.00 0.00 2.73
3235 3946 3.151912 AGCTCCTGTTGAGATTTTGCT 57.848 42.857 0.00 0.00 44.42 3.91
3373 4087 8.964476 ATGAGTTTGGAATACTCGAATAATGT 57.036 30.769 0.00 0.00 43.90 2.71
3381 4095 2.906354 ACTCGAATAATGTGTGCCTCC 58.094 47.619 0.00 0.00 0.00 4.30
3485 4204 3.130869 TGCATTTGAAGTGCTGTTTCTGT 59.869 39.130 13.75 0.00 42.92 3.41
3487 4206 3.781079 TTTGAAGTGCTGTTTCTGTGG 57.219 42.857 0.00 0.00 0.00 4.17
3501 4220 8.354426 GCTGTTTCTGTGGTTTTAATAGGTAAA 58.646 33.333 0.00 0.00 0.00 2.01
3547 4266 9.053840 CAATCTATTGCTTACACTCTCAATGAT 57.946 33.333 0.00 0.00 32.20 2.45
3600 4319 0.533491 TTGAGCATTTGGATGGCTGC 59.467 50.000 0.00 0.00 33.72 5.25
3815 4534 6.757897 TCAGGTATTGATTTCACCATGTTC 57.242 37.500 0.00 0.00 34.62 3.18
3838 4557 2.554806 ATTTCGTCGTAGATGTCGCA 57.445 45.000 0.00 0.00 45.22 5.10
3893 4612 5.026121 TGTCCTCTTCCAGTATGTTCATCT 58.974 41.667 0.00 0.00 0.00 2.90
3894 4613 5.105187 TGTCCTCTTCCAGTATGTTCATCTG 60.105 44.000 0.00 0.00 0.00 2.90
3966 4695 6.119144 TGCATTCTAAGAGTTTATTTCCGC 57.881 37.500 0.00 0.00 0.00 5.54
3997 4726 8.851541 AATAACATTTCAATTGAACATTGGCT 57.148 26.923 20.35 11.73 33.13 4.75
3998 4727 6.548441 AACATTTCAATTGAACATTGGCTG 57.452 33.333 20.35 11.09 33.13 4.85
3999 4728 5.613329 ACATTTCAATTGAACATTGGCTGT 58.387 33.333 20.35 11.62 40.84 4.40
4000 4729 6.757237 ACATTTCAATTGAACATTGGCTGTA 58.243 32.000 20.35 2.48 36.98 2.74
4001 4730 6.869913 ACATTTCAATTGAACATTGGCTGTAG 59.130 34.615 20.35 6.12 36.98 2.74
4002 4731 5.389859 TTCAATTGAACATTGGCTGTAGG 57.610 39.130 16.91 0.00 36.98 3.18
4003 4732 4.661222 TCAATTGAACATTGGCTGTAGGA 58.339 39.130 5.45 0.00 36.98 2.94
4004 4733 5.076182 TCAATTGAACATTGGCTGTAGGAA 58.924 37.500 5.45 0.00 36.98 3.36
4005 4734 5.538053 TCAATTGAACATTGGCTGTAGGAAA 59.462 36.000 5.45 0.00 36.98 3.13
4006 4735 6.211184 TCAATTGAACATTGGCTGTAGGAAAT 59.789 34.615 5.45 0.00 36.98 2.17
4019 4748 7.018550 TGGCTGTAGGAAATAAATATCTCCCAT 59.981 37.037 0.00 0.00 0.00 4.00
4243 4975 3.552890 GCTTACTTGGGGAAGTTTTGCAG 60.553 47.826 0.00 0.00 34.37 4.41
4314 5046 5.125356 TCAGATATGGTTGTTGCTACATGG 58.875 41.667 0.81 0.00 33.44 3.66
4441 5173 9.267084 GGAAGTATTGAGAGATTTAATCTGGTC 57.733 37.037 12.63 9.17 40.38 4.02
4493 5225 5.530171 TGATTCTTTAGATGCTTGGATCTGC 59.470 40.000 13.64 0.00 34.42 4.26
4498 5230 1.419387 AGATGCTTGGATCTGCCTACC 59.581 52.381 3.87 0.00 37.63 3.18
4536 5268 4.792528 ATGCACACGAAAATGTTTTTGG 57.207 36.364 9.58 1.67 36.16 3.28
4591 5323 2.038033 GTGCACTAAGTTGGGTGTCCTA 59.962 50.000 10.32 0.00 36.03 2.94
4747 5480 8.429493 AAACACTTTGTACTTCTGTAGGTTAC 57.571 34.615 0.00 0.00 0.00 2.50
4993 5726 0.538118 TGTCTATGCCCCCACGTTAC 59.462 55.000 0.00 0.00 0.00 2.50
5064 5797 5.070847 ACAAGGACTTGAAAGCAAAATCCAT 59.929 36.000 18.15 0.00 42.93 3.41
5113 5846 1.133407 GTCCAAACTTGTCGGCAACAA 59.867 47.619 0.00 4.13 45.60 2.83
5140 5873 7.928307 AGATTGCAGAAGTTTCTTATGCTAA 57.072 32.000 22.96 17.18 34.74 3.09
5145 5880 8.615878 TGCAGAAGTTTCTTATGCTAAGTAAA 57.384 30.769 22.96 5.27 34.74 2.01
5195 5930 5.050227 AGCTAACTACTATCTACAAGACGCG 60.050 44.000 3.53 3.53 0.00 6.01
5361 6096 7.287061 ACTAGATCTAGAACAGTCTGCTATGT 58.713 38.462 31.91 5.65 36.97 2.29
5413 6148 4.079970 CGTTCCTGCTATGAGATAGGGTA 58.920 47.826 0.00 0.00 33.43 3.69
5426 6162 0.117541 TAGGGTACAGGAAGGTGGCA 59.882 55.000 0.00 0.00 0.00 4.92
5441 6177 6.377327 AAGGTGGCAATAATAGTTGAATCG 57.623 37.500 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.372369 CTCGTTGGAATCTCTAAAAAGACTTAT 57.628 33.333 0.00 0.00 0.00 1.73
4 5 8.365647 ACTCGTTGGAATCTCTAAAAAGACTTA 58.634 33.333 0.00 0.00 0.00 2.24
5 6 7.171678 CACTCGTTGGAATCTCTAAAAAGACTT 59.828 37.037 0.00 0.00 0.00 3.01
6 7 6.647067 CACTCGTTGGAATCTCTAAAAAGACT 59.353 38.462 0.00 0.00 0.00 3.24
7 8 6.645415 TCACTCGTTGGAATCTCTAAAAAGAC 59.355 38.462 0.00 0.00 0.00 3.01
8 9 6.645415 GTCACTCGTTGGAATCTCTAAAAAGA 59.355 38.462 0.00 0.00 0.00 2.52
9 10 6.647067 AGTCACTCGTTGGAATCTCTAAAAAG 59.353 38.462 0.00 0.00 0.00 2.27
10 11 6.522054 AGTCACTCGTTGGAATCTCTAAAAA 58.478 36.000 0.00 0.00 0.00 1.94
11 12 6.097915 AGTCACTCGTTGGAATCTCTAAAA 57.902 37.500 0.00 0.00 0.00 1.52
12 13 5.723672 AGTCACTCGTTGGAATCTCTAAA 57.276 39.130 0.00 0.00 0.00 1.85
13 14 5.708697 TGTAGTCACTCGTTGGAATCTCTAA 59.291 40.000 0.00 0.00 0.00 2.10
14 15 5.250982 TGTAGTCACTCGTTGGAATCTCTA 58.749 41.667 0.00 0.00 0.00 2.43
15 16 4.079970 TGTAGTCACTCGTTGGAATCTCT 58.920 43.478 0.00 0.00 0.00 3.10
16 17 4.436242 TGTAGTCACTCGTTGGAATCTC 57.564 45.455 0.00 0.00 0.00 2.75
17 18 5.448768 CGTATGTAGTCACTCGTTGGAATCT 60.449 44.000 0.00 0.00 0.00 2.40
18 19 4.733887 CGTATGTAGTCACTCGTTGGAATC 59.266 45.833 0.00 0.00 0.00 2.52
19 20 4.439700 CCGTATGTAGTCACTCGTTGGAAT 60.440 45.833 0.00 0.00 0.00 3.01
20 21 3.119743 CCGTATGTAGTCACTCGTTGGAA 60.120 47.826 0.00 0.00 0.00 3.53
21 22 2.421073 CCGTATGTAGTCACTCGTTGGA 59.579 50.000 0.00 0.00 0.00 3.53
22 23 2.421073 TCCGTATGTAGTCACTCGTTGG 59.579 50.000 0.00 0.00 0.00 3.77
23 24 3.681855 CTCCGTATGTAGTCACTCGTTG 58.318 50.000 0.00 0.00 0.00 4.10
24 25 2.097142 GCTCCGTATGTAGTCACTCGTT 59.903 50.000 0.00 0.00 0.00 3.85
25 26 1.669779 GCTCCGTATGTAGTCACTCGT 59.330 52.381 0.00 0.00 0.00 4.18
26 27 1.669265 TGCTCCGTATGTAGTCACTCG 59.331 52.381 0.00 0.00 0.00 4.18
27 28 3.777465 TTGCTCCGTATGTAGTCACTC 57.223 47.619 0.00 0.00 0.00 3.51
28 29 3.510360 AGTTTGCTCCGTATGTAGTCACT 59.490 43.478 0.00 0.00 0.00 3.41
29 30 3.612860 CAGTTTGCTCCGTATGTAGTCAC 59.387 47.826 0.00 0.00 0.00 3.67
30 31 3.508402 TCAGTTTGCTCCGTATGTAGTCA 59.492 43.478 0.00 0.00 0.00 3.41
31 32 4.106029 TCAGTTTGCTCCGTATGTAGTC 57.894 45.455 0.00 0.00 0.00 2.59
32 33 3.510360 ACTCAGTTTGCTCCGTATGTAGT 59.490 43.478 0.00 0.00 0.00 2.73
33 34 4.111375 ACTCAGTTTGCTCCGTATGTAG 57.889 45.455 0.00 0.00 0.00 2.74
34 35 5.648178 TTACTCAGTTTGCTCCGTATGTA 57.352 39.130 0.00 0.00 0.00 2.29
35 36 4.530710 TTACTCAGTTTGCTCCGTATGT 57.469 40.909 0.00 0.00 0.00 2.29
36 37 4.092968 GGTTTACTCAGTTTGCTCCGTATG 59.907 45.833 0.00 0.00 0.00 2.39
37 38 4.020485 AGGTTTACTCAGTTTGCTCCGTAT 60.020 41.667 0.00 0.00 0.00 3.06
38 39 3.322828 AGGTTTACTCAGTTTGCTCCGTA 59.677 43.478 0.00 0.00 0.00 4.02
39 40 2.104281 AGGTTTACTCAGTTTGCTCCGT 59.896 45.455 0.00 0.00 0.00 4.69
40 41 2.480419 CAGGTTTACTCAGTTTGCTCCG 59.520 50.000 0.00 0.00 0.00 4.63
41 42 2.226674 GCAGGTTTACTCAGTTTGCTCC 59.773 50.000 0.00 0.00 0.00 4.70
42 43 2.878406 TGCAGGTTTACTCAGTTTGCTC 59.122 45.455 0.00 0.00 0.00 4.26
43 44 2.618709 GTGCAGGTTTACTCAGTTTGCT 59.381 45.455 0.00 0.00 0.00 3.91
44 45 2.618709 AGTGCAGGTTTACTCAGTTTGC 59.381 45.455 0.00 0.00 0.00 3.68
45 46 4.130118 AGAGTGCAGGTTTACTCAGTTTG 58.870 43.478 7.09 0.00 44.41 2.93
46 47 4.423625 AGAGTGCAGGTTTACTCAGTTT 57.576 40.909 7.09 0.00 44.41 2.66
47 48 5.546621 TTAGAGTGCAGGTTTACTCAGTT 57.453 39.130 7.09 0.00 44.41 3.16
48 49 5.546621 TTTAGAGTGCAGGTTTACTCAGT 57.453 39.130 7.09 0.00 44.41 3.41
49 50 8.607459 CATATTTTAGAGTGCAGGTTTACTCAG 58.393 37.037 7.09 0.00 44.41 3.35
50 51 8.100791 ACATATTTTAGAGTGCAGGTTTACTCA 58.899 33.333 7.09 0.00 44.41 3.41
51 52 8.494016 ACATATTTTAGAGTGCAGGTTTACTC 57.506 34.615 0.00 0.00 42.77 2.59
52 53 8.322091 AGACATATTTTAGAGTGCAGGTTTACT 58.678 33.333 0.00 0.00 0.00 2.24
53 54 8.494016 AGACATATTTTAGAGTGCAGGTTTAC 57.506 34.615 0.00 0.00 0.00 2.01
54 55 9.595823 GTAGACATATTTTAGAGTGCAGGTTTA 57.404 33.333 0.00 0.00 0.00 2.01
55 56 8.100791 TGTAGACATATTTTAGAGTGCAGGTTT 58.899 33.333 0.00 0.00 0.00 3.27
56 57 7.620880 TGTAGACATATTTTAGAGTGCAGGTT 58.379 34.615 0.00 0.00 0.00 3.50
57 58 7.182817 TGTAGACATATTTTAGAGTGCAGGT 57.817 36.000 0.00 0.00 0.00 4.00
58 59 9.197694 GTATGTAGACATATTTTAGAGTGCAGG 57.802 37.037 5.69 0.00 40.53 4.85
59 60 9.750125 TGTATGTAGACATATTTTAGAGTGCAG 57.250 33.333 5.69 0.00 40.53 4.41
116 117 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
117 118 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
118 119 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
119 120 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
120 121 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
121 122 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
122 123 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
123 124 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
124 125 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
125 126 9.471702 CTTATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
126 127 7.093421 GCTTATACTCCCTCCGTTCCTAAATAT 60.093 40.741 0.00 0.00 0.00 1.28
127 128 6.210185 GCTTATACTCCCTCCGTTCCTAAATA 59.790 42.308 0.00 0.00 0.00 1.40
128 129 5.011840 GCTTATACTCCCTCCGTTCCTAAAT 59.988 44.000 0.00 0.00 0.00 1.40
129 130 4.343239 GCTTATACTCCCTCCGTTCCTAAA 59.657 45.833 0.00 0.00 0.00 1.85
130 131 3.893813 GCTTATACTCCCTCCGTTCCTAA 59.106 47.826 0.00 0.00 0.00 2.69
131 132 3.139770 AGCTTATACTCCCTCCGTTCCTA 59.860 47.826 0.00 0.00 0.00 2.94
132 133 2.091222 AGCTTATACTCCCTCCGTTCCT 60.091 50.000 0.00 0.00 0.00 3.36
133 134 2.317973 AGCTTATACTCCCTCCGTTCC 58.682 52.381 0.00 0.00 0.00 3.62
134 135 4.143543 ACTAGCTTATACTCCCTCCGTTC 58.856 47.826 0.00 0.00 0.00 3.95
135 136 4.181799 ACTAGCTTATACTCCCTCCGTT 57.818 45.455 0.00 0.00 0.00 4.44
136 137 3.880168 ACTAGCTTATACTCCCTCCGT 57.120 47.619 0.00 0.00 0.00 4.69
137 138 5.532664 AAAACTAGCTTATACTCCCTCCG 57.467 43.478 0.00 0.00 0.00 4.63
138 139 6.264067 TCGTAAAACTAGCTTATACTCCCTCC 59.736 42.308 0.00 0.00 0.00 4.30
139 140 7.269477 TCGTAAAACTAGCTTATACTCCCTC 57.731 40.000 0.00 0.00 0.00 4.30
140 141 7.651027 TTCGTAAAACTAGCTTATACTCCCT 57.349 36.000 0.00 0.00 0.00 4.20
141 142 8.598924 GTTTTCGTAAAACTAGCTTATACTCCC 58.401 37.037 12.83 0.00 45.55 4.30
157 158 8.913656 CCAGTTTTAAGTTGTTGTTTTCGTAAA 58.086 29.630 0.00 0.00 0.00 2.01
158 159 8.081025 ACCAGTTTTAAGTTGTTGTTTTCGTAA 58.919 29.630 0.00 0.00 0.00 3.18
159 160 7.592051 ACCAGTTTTAAGTTGTTGTTTTCGTA 58.408 30.769 0.00 0.00 0.00 3.43
160 161 6.448852 ACCAGTTTTAAGTTGTTGTTTTCGT 58.551 32.000 0.00 0.00 0.00 3.85
161 162 6.937886 ACCAGTTTTAAGTTGTTGTTTTCG 57.062 33.333 0.00 0.00 0.00 3.46
162 163 9.588774 GAAAACCAGTTTTAAGTTGTTGTTTTC 57.411 29.630 8.42 0.00 42.26 2.29
163 164 8.561212 GGAAAACCAGTTTTAAGTTGTTGTTTT 58.439 29.630 8.42 0.00 42.26 2.43
164 165 7.934665 AGGAAAACCAGTTTTAAGTTGTTGTTT 59.065 29.630 8.42 0.00 42.26 2.83
165 166 7.446769 AGGAAAACCAGTTTTAAGTTGTTGTT 58.553 30.769 8.42 0.00 42.26 2.83
166 167 6.999950 AGGAAAACCAGTTTTAAGTTGTTGT 58.000 32.000 8.42 0.00 42.26 3.32
167 168 8.989653 TTAGGAAAACCAGTTTTAAGTTGTTG 57.010 30.769 8.42 0.00 42.26 3.33
168 169 9.999660 TTTTAGGAAAACCAGTTTTAAGTTGTT 57.000 25.926 8.42 0.00 42.26 2.83
169 170 9.999660 TTTTTAGGAAAACCAGTTTTAAGTTGT 57.000 25.926 8.42 0.00 42.26 3.32
172 173 9.826574 GGATTTTTAGGAAAACCAGTTTTAAGT 57.173 29.630 8.42 0.00 42.26 2.24
175 176 9.429109 AGAGGATTTTTAGGAAAACCAGTTTTA 57.571 29.630 8.42 0.00 42.26 1.52
176 177 8.319057 AGAGGATTTTTAGGAAAACCAGTTTT 57.681 30.769 8.19 8.19 44.59 2.43
177 178 7.914427 AGAGGATTTTTAGGAAAACCAGTTT 57.086 32.000 0.00 0.00 37.56 2.66
178 179 7.914427 AAGAGGATTTTTAGGAAAACCAGTT 57.086 32.000 0.00 0.00 37.56 3.16
179 180 9.429109 TTTAAGAGGATTTTTAGGAAAACCAGT 57.571 29.630 0.00 0.00 37.56 4.00
185 186 9.429109 ACCAGTTTTAAGAGGATTTTTAGGAAA 57.571 29.630 0.00 0.00 0.00 3.13
186 187 9.429109 AACCAGTTTTAAGAGGATTTTTAGGAA 57.571 29.630 0.00 0.00 0.00 3.36
187 188 9.429109 AAACCAGTTTTAAGAGGATTTTTAGGA 57.571 29.630 0.00 0.00 0.00 2.94
191 192 8.768397 AGGAAAACCAGTTTTAAGAGGATTTTT 58.232 29.630 8.42 0.00 42.26 1.94
192 193 8.319057 AGGAAAACCAGTTTTAAGAGGATTTT 57.681 30.769 8.42 0.00 42.26 1.82
193 194 7.914427 AGGAAAACCAGTTTTAAGAGGATTT 57.086 32.000 8.42 0.00 42.26 2.17
194 195 9.429109 TTTAGGAAAACCAGTTTTAAGAGGATT 57.571 29.630 8.42 0.00 42.26 3.01
195 196 9.429109 TTTTAGGAAAACCAGTTTTAAGAGGAT 57.571 29.630 8.42 0.00 42.26 3.24
196 197 8.689061 GTTTTAGGAAAACCAGTTTTAAGAGGA 58.311 33.333 8.42 0.00 43.78 3.71
197 198 8.867112 GTTTTAGGAAAACCAGTTTTAAGAGG 57.133 34.615 8.42 0.00 43.78 3.69
214 215 9.476928 AGCTAGTATTTGAGAGTAGTTTTAGGA 57.523 33.333 0.00 0.00 0.00 2.94
219 220 9.422681 TGGATAGCTAGTATTTGAGAGTAGTTT 57.577 33.333 0.00 0.00 0.00 2.66
220 221 8.998277 TGGATAGCTAGTATTTGAGAGTAGTT 57.002 34.615 0.00 0.00 0.00 2.24
221 222 8.998277 TTGGATAGCTAGTATTTGAGAGTAGT 57.002 34.615 0.00 0.00 0.00 2.73
222 223 9.685828 GTTTGGATAGCTAGTATTTGAGAGTAG 57.314 37.037 0.00 0.00 0.00 2.57
223 224 9.197306 TGTTTGGATAGCTAGTATTTGAGAGTA 57.803 33.333 0.00 0.00 0.00 2.59
224 225 8.079211 TGTTTGGATAGCTAGTATTTGAGAGT 57.921 34.615 0.00 0.00 0.00 3.24
225 226 8.821894 GTTGTTTGGATAGCTAGTATTTGAGAG 58.178 37.037 0.00 0.00 0.00 3.20
226 227 7.769044 GGTTGTTTGGATAGCTAGTATTTGAGA 59.231 37.037 0.00 0.00 0.00 3.27
227 228 7.552687 TGGTTGTTTGGATAGCTAGTATTTGAG 59.447 37.037 0.00 0.00 0.00 3.02
228 229 7.335924 GTGGTTGTTTGGATAGCTAGTATTTGA 59.664 37.037 0.00 0.00 0.00 2.69
229 230 7.336931 AGTGGTTGTTTGGATAGCTAGTATTTG 59.663 37.037 0.00 0.00 0.00 2.32
230 231 7.402862 AGTGGTTGTTTGGATAGCTAGTATTT 58.597 34.615 0.00 0.00 0.00 1.40
231 232 6.958767 AGTGGTTGTTTGGATAGCTAGTATT 58.041 36.000 0.00 0.00 0.00 1.89
232 233 6.561519 AGTGGTTGTTTGGATAGCTAGTAT 57.438 37.500 0.00 0.00 0.00 2.12
233 234 7.484993 TTAGTGGTTGTTTGGATAGCTAGTA 57.515 36.000 0.00 0.00 0.00 1.82
234 235 4.910458 AGTGGTTGTTTGGATAGCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
235 236 7.681939 TTTTAGTGGTTGTTTGGATAGCTAG 57.318 36.000 0.00 0.00 0.00 3.42
237 238 6.969993 TTTTTAGTGGTTGTTTGGATAGCT 57.030 33.333 0.00 0.00 0.00 3.32
262 263 8.936864 CGAAATCACTAATTTTGAGGAGTACTT 58.063 33.333 0.00 0.00 40.05 2.24
263 264 7.549488 CCGAAATCACTAATTTTGAGGAGTACT 59.451 37.037 0.00 0.00 40.05 2.73
264 265 7.676572 GCCGAAATCACTAATTTTGAGGAGTAC 60.677 40.741 0.33 0.00 40.05 2.73
265 266 6.315393 GCCGAAATCACTAATTTTGAGGAGTA 59.685 38.462 0.33 0.00 40.05 2.59
266 267 5.123979 GCCGAAATCACTAATTTTGAGGAGT 59.876 40.000 0.33 0.00 40.05 3.85
267 268 5.123820 TGCCGAAATCACTAATTTTGAGGAG 59.876 40.000 0.33 0.00 40.05 3.69
268 269 5.007034 TGCCGAAATCACTAATTTTGAGGA 58.993 37.500 0.33 0.00 40.05 3.71
269 270 5.123820 TCTGCCGAAATCACTAATTTTGAGG 59.876 40.000 0.33 0.00 40.05 3.86
270 271 6.182039 TCTGCCGAAATCACTAATTTTGAG 57.818 37.500 0.33 0.00 40.05 3.02
271 272 6.456853 CGATCTGCCGAAATCACTAATTTTGA 60.457 38.462 0.00 0.00 40.05 2.69
272 273 5.678483 CGATCTGCCGAAATCACTAATTTTG 59.322 40.000 0.00 0.00 37.70 2.44
273 274 5.584649 TCGATCTGCCGAAATCACTAATTTT 59.415 36.000 0.00 0.00 37.70 1.82
274 275 5.116180 TCGATCTGCCGAAATCACTAATTT 58.884 37.500 0.00 0.00 40.34 1.82
275 276 4.693283 TCGATCTGCCGAAATCACTAATT 58.307 39.130 0.00 0.00 35.42 1.40
276 277 4.322080 TCGATCTGCCGAAATCACTAAT 57.678 40.909 0.00 0.00 35.42 1.73
277 278 3.793797 TCGATCTGCCGAAATCACTAA 57.206 42.857 0.00 0.00 35.42 2.24
278 279 3.793797 TTCGATCTGCCGAAATCACTA 57.206 42.857 0.00 0.00 44.35 2.74
279 280 2.672961 TTCGATCTGCCGAAATCACT 57.327 45.000 0.00 0.00 44.35 3.41
285 286 0.672401 GTTGGGTTCGATCTGCCGAA 60.672 55.000 0.00 0.00 45.01 4.30
286 287 1.079405 GTTGGGTTCGATCTGCCGA 60.079 57.895 0.00 0.00 36.70 5.54
287 288 2.106683 GGTTGGGTTCGATCTGCCG 61.107 63.158 0.00 0.00 0.00 5.69
288 289 0.608035 TTGGTTGGGTTCGATCTGCC 60.608 55.000 0.00 0.00 0.00 4.85
289 290 0.521735 GTTGGTTGGGTTCGATCTGC 59.478 55.000 0.00 0.00 0.00 4.26
290 291 2.185004 AGTTGGTTGGGTTCGATCTG 57.815 50.000 0.00 0.00 0.00 2.90
291 292 2.552373 GGAAGTTGGTTGGGTTCGATCT 60.552 50.000 0.00 0.00 0.00 2.75
292 293 1.810755 GGAAGTTGGTTGGGTTCGATC 59.189 52.381 0.00 0.00 0.00 3.69
293 294 1.423921 AGGAAGTTGGTTGGGTTCGAT 59.576 47.619 0.00 0.00 0.00 3.59
294 295 0.841289 AGGAAGTTGGTTGGGTTCGA 59.159 50.000 0.00 0.00 0.00 3.71
295 296 0.951558 CAGGAAGTTGGTTGGGTTCG 59.048 55.000 0.00 0.00 0.00 3.95
296 297 2.230660 CTCAGGAAGTTGGTTGGGTTC 58.769 52.381 0.00 0.00 0.00 3.62
297 298 1.754201 GCTCAGGAAGTTGGTTGGGTT 60.754 52.381 0.00 0.00 0.00 4.11
298 299 0.178990 GCTCAGGAAGTTGGTTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
299 300 0.111253 AGCTCAGGAAGTTGGTTGGG 59.889 55.000 0.00 0.00 0.00 4.12
300 301 2.303022 TCTAGCTCAGGAAGTTGGTTGG 59.697 50.000 0.00 0.00 0.00 3.77
301 302 3.259374 TCTCTAGCTCAGGAAGTTGGTTG 59.741 47.826 0.00 0.00 0.00 3.77
302 303 3.511477 TCTCTAGCTCAGGAAGTTGGTT 58.489 45.455 0.00 0.00 0.00 3.67
303 304 3.096092 CTCTCTAGCTCAGGAAGTTGGT 58.904 50.000 0.00 0.00 0.00 3.67
304 305 3.360867 TCTCTCTAGCTCAGGAAGTTGG 58.639 50.000 0.00 0.00 0.00 3.77
305 306 4.096382 GTCTCTCTCTAGCTCAGGAAGTTG 59.904 50.000 0.00 0.00 0.00 3.16
306 307 4.018415 AGTCTCTCTCTAGCTCAGGAAGTT 60.018 45.833 0.00 0.00 0.00 2.66
307 308 3.523564 AGTCTCTCTCTAGCTCAGGAAGT 59.476 47.826 0.00 0.00 0.00 3.01
308 309 4.156455 AGTCTCTCTCTAGCTCAGGAAG 57.844 50.000 0.00 0.00 0.00 3.46
309 310 4.584638 AAGTCTCTCTCTAGCTCAGGAA 57.415 45.455 0.00 0.00 0.00 3.36
310 311 4.442332 CGTAAGTCTCTCTCTAGCTCAGGA 60.442 50.000 0.00 0.00 0.00 3.86
311 312 3.807622 CGTAAGTCTCTCTCTAGCTCAGG 59.192 52.174 0.00 0.00 0.00 3.86
312 313 3.247648 GCGTAAGTCTCTCTCTAGCTCAG 59.752 52.174 0.00 0.00 41.68 3.35
313 314 3.199677 GCGTAAGTCTCTCTCTAGCTCA 58.800 50.000 0.00 0.00 41.68 4.26
314 315 2.220133 CGCGTAAGTCTCTCTCTAGCTC 59.780 54.545 0.00 0.00 41.68 4.09
315 316 2.206750 CGCGTAAGTCTCTCTCTAGCT 58.793 52.381 0.00 0.00 41.68 3.32
316 317 1.333435 GCGCGTAAGTCTCTCTCTAGC 60.333 57.143 8.43 0.00 41.68 3.42
317 318 1.934525 TGCGCGTAAGTCTCTCTCTAG 59.065 52.381 8.43 0.00 41.68 2.43
318 319 2.019948 TGCGCGTAAGTCTCTCTCTA 57.980 50.000 8.43 0.00 41.68 2.43
319 320 1.384525 ATGCGCGTAAGTCTCTCTCT 58.615 50.000 8.43 0.00 41.68 3.10
320 321 2.031807 TGTATGCGCGTAAGTCTCTCTC 59.968 50.000 11.68 0.00 41.68 3.20
321 322 2.014857 TGTATGCGCGTAAGTCTCTCT 58.985 47.619 11.68 0.00 41.68 3.10
322 323 2.376956 CTGTATGCGCGTAAGTCTCTC 58.623 52.381 11.68 0.00 41.68 3.20
323 324 1.534175 GCTGTATGCGCGTAAGTCTCT 60.534 52.381 11.68 0.00 41.68 3.10
324 325 0.847035 GCTGTATGCGCGTAAGTCTC 59.153 55.000 11.68 0.00 41.68 3.36
325 326 2.959275 GCTGTATGCGCGTAAGTCT 58.041 52.632 11.68 0.00 41.68 3.24
335 336 0.673644 ACGTGGGTTGAGCTGTATGC 60.674 55.000 0.00 0.00 43.29 3.14
336 337 2.665649 TACGTGGGTTGAGCTGTATG 57.334 50.000 0.00 0.00 0.00 2.39
337 338 2.741878 GCATACGTGGGTTGAGCTGTAT 60.742 50.000 0.00 0.00 0.00 2.29
338 339 1.404986 GCATACGTGGGTTGAGCTGTA 60.405 52.381 0.00 0.00 0.00 2.74
339 340 0.673644 GCATACGTGGGTTGAGCTGT 60.674 55.000 0.00 0.00 0.00 4.40
340 341 0.391661 AGCATACGTGGGTTGAGCTG 60.392 55.000 0.00 0.00 0.00 4.24
341 342 0.324943 AAGCATACGTGGGTTGAGCT 59.675 50.000 0.00 0.00 0.00 4.09
342 343 0.727398 GAAGCATACGTGGGTTGAGC 59.273 55.000 10.58 0.00 0.00 4.26
343 344 1.369625 GGAAGCATACGTGGGTTGAG 58.630 55.000 10.58 0.00 0.00 3.02
344 345 0.390603 CGGAAGCATACGTGGGTTGA 60.391 55.000 10.58 0.00 0.00 3.18
345 346 1.366111 CCGGAAGCATACGTGGGTTG 61.366 60.000 10.58 0.00 0.00 3.77
346 347 1.078708 CCGGAAGCATACGTGGGTT 60.079 57.895 0.00 1.67 0.00 4.11
347 348 2.582436 CCGGAAGCATACGTGGGT 59.418 61.111 0.00 0.00 0.00 4.51
348 349 2.895372 GCCGGAAGCATACGTGGG 60.895 66.667 5.05 0.00 42.97 4.61
349 350 2.895372 GGCCGGAAGCATACGTGG 60.895 66.667 5.05 0.00 46.50 4.94
350 351 2.895372 GGGCCGGAAGCATACGTG 60.895 66.667 5.05 0.00 46.50 4.49
351 352 4.524318 CGGGCCGGAAGCATACGT 62.524 66.667 20.56 0.00 46.50 3.57
358 359 4.851179 GGTTAGGCGGGCCGGAAG 62.851 72.222 29.48 0.00 41.95 3.46
362 363 4.404098 AACAGGTTAGGCGGGCCG 62.404 66.667 24.35 24.35 41.95 6.13
363 364 2.437895 GAACAGGTTAGGCGGGCC 60.438 66.667 0.18 0.18 0.00 5.80
364 365 2.437895 GGAACAGGTTAGGCGGGC 60.438 66.667 0.00 0.00 0.00 6.13
365 366 2.271173 GGGAACAGGTTAGGCGGG 59.729 66.667 0.00 0.00 0.00 6.13
366 367 2.271173 GGGGAACAGGTTAGGCGG 59.729 66.667 0.00 0.00 0.00 6.13
367 368 2.125269 CGGGGAACAGGTTAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
368 369 2.437895 GCGGGGAACAGGTTAGGC 60.438 66.667 0.00 0.00 0.00 3.93
369 370 2.253403 GAGGCGGGGAACAGGTTAGG 62.253 65.000 0.00 0.00 0.00 2.69
370 371 1.221021 GAGGCGGGGAACAGGTTAG 59.779 63.158 0.00 0.00 0.00 2.34
371 372 2.652095 CGAGGCGGGGAACAGGTTA 61.652 63.158 0.00 0.00 0.00 2.85
372 373 4.016706 CGAGGCGGGGAACAGGTT 62.017 66.667 0.00 0.00 0.00 3.50
374 375 4.148825 CTCGAGGCGGGGAACAGG 62.149 72.222 3.91 0.00 0.00 4.00
375 376 1.107538 TATCTCGAGGCGGGGAACAG 61.108 60.000 13.56 0.00 0.00 3.16
376 377 0.469331 ATATCTCGAGGCGGGGAACA 60.469 55.000 13.56 0.00 0.00 3.18
377 378 0.680061 AATATCTCGAGGCGGGGAAC 59.320 55.000 13.56 0.00 0.00 3.62
378 379 1.420430 AAATATCTCGAGGCGGGGAA 58.580 50.000 13.56 0.00 0.00 3.97
379 380 1.343465 GAAAATATCTCGAGGCGGGGA 59.657 52.381 13.56 0.00 0.00 4.81
380 381 1.070134 TGAAAATATCTCGAGGCGGGG 59.930 52.381 13.56 0.00 0.00 5.73
381 382 2.526304 TGAAAATATCTCGAGGCGGG 57.474 50.000 13.56 0.00 0.00 6.13
382 383 3.433615 GGAATGAAAATATCTCGAGGCGG 59.566 47.826 13.56 0.00 0.00 6.13
383 384 3.433615 GGGAATGAAAATATCTCGAGGCG 59.566 47.826 13.56 0.00 0.00 5.52
384 385 3.753797 GGGGAATGAAAATATCTCGAGGC 59.246 47.826 13.56 0.00 0.00 4.70
385 386 4.327680 GGGGGAATGAAAATATCTCGAGG 58.672 47.826 13.56 0.00 0.00 4.63
1144 1157 3.077359 GGTTCACAGAGCAAGCAGTAAT 58.923 45.455 0.00 0.00 0.00 1.89
1192 1206 5.358160 GGCATGCCTCTTAACTAAAAGTCAT 59.642 40.000 29.98 0.00 0.00 3.06
1196 1210 5.126061 ACATGGCATGCCTCTTAACTAAAAG 59.874 40.000 35.53 12.16 36.94 2.27
1216 1230 4.214119 CGGAATTAACATCTAGGCCACATG 59.786 45.833 5.01 6.26 0.00 3.21
1226 1240 4.558538 GCATGAAGCGGAATTAACATCT 57.441 40.909 0.00 0.00 0.00 2.90
1240 1254 6.845302 TCAAGCTAAACAACATAGCATGAAG 58.155 36.000 10.06 0.00 45.63 3.02
1262 1276 2.166870 ACAGTACCAAATATCGCCGTCA 59.833 45.455 0.00 0.00 0.00 4.35
1301 1317 1.147824 CCCTCCTGGTGCTAGCATG 59.852 63.158 22.51 13.81 0.00 4.06
1317 1333 5.312079 AGAATATAAGTCATGCTTCTGCCC 58.688 41.667 5.78 0.00 38.57 5.36
1433 1449 3.930848 ACGCTTACACATAACCAAGCTAC 59.069 43.478 3.94 0.00 40.94 3.58
1441 1457 5.609088 CAGAAAGACACGCTTACACATAAC 58.391 41.667 0.00 0.00 35.24 1.89
1444 1460 2.480419 GCAGAAAGACACGCTTACACAT 59.520 45.455 0.00 0.00 35.24 3.21
1445 1461 1.864711 GCAGAAAGACACGCTTACACA 59.135 47.619 0.00 0.00 35.24 3.72
1458 1474 5.412594 TCCACTTTGCTAATACTGCAGAAAG 59.587 40.000 23.35 18.83 41.71 2.62
1481 1497 3.191371 CCTGGCCAACAACAACTTAGATC 59.809 47.826 7.01 0.00 0.00 2.75
1527 1543 6.071391 CCCAGCCTGTTTGTTCATAACTAAAT 60.071 38.462 0.00 0.00 0.00 1.40
1531 1547 3.157087 CCCAGCCTGTTTGTTCATAACT 58.843 45.455 0.00 0.00 0.00 2.24
1532 1548 3.153919 TCCCAGCCTGTTTGTTCATAAC 58.846 45.455 0.00 0.00 0.00 1.89
1533 1549 3.517296 TCCCAGCCTGTTTGTTCATAA 57.483 42.857 0.00 0.00 0.00 1.90
1534 1550 3.245229 ACATCCCAGCCTGTTTGTTCATA 60.245 43.478 0.00 0.00 0.00 2.15
1535 1551 2.173519 CATCCCAGCCTGTTTGTTCAT 58.826 47.619 0.00 0.00 0.00 2.57
1577 1593 5.595952 GCAATGAAATCCAGTTTCCCTAGAT 59.404 40.000 0.00 0.00 44.53 1.98
1676 1692 7.822334 CACAGTCCACTTTAACTGGATATTACA 59.178 37.037 7.36 0.00 45.71 2.41
1745 2397 6.570654 AAAGATAGGGGATACTTCGGAAAA 57.429 37.500 0.00 0.00 0.00 2.29
1758 2410 7.122055 TGCATTGTTTGTAACTAAAGATAGGGG 59.878 37.037 0.00 0.00 33.15 4.79
1794 2446 9.510490 TCAAGTGTTGAATTCGAAACGGAAGTC 62.510 40.741 9.91 0.00 39.46 3.01
1795 2447 7.835160 TCAAGTGTTGAATTCGAAACGGAAGT 61.835 38.462 9.91 0.00 41.44 3.01
1798 2450 3.872182 TCAAGTGTTGAATTCGAAACGGA 59.128 39.130 9.91 9.15 36.59 4.69
1851 2508 5.847304 TCCATTTCCTCTTGACAGATATCG 58.153 41.667 0.00 0.00 0.00 2.92
1875 2532 4.895297 AGATCAAACACAAGGAAATGGTGT 59.105 37.500 0.00 0.00 46.92 4.16
1876 2533 5.224888 CAGATCAAACACAAGGAAATGGTG 58.775 41.667 0.00 0.00 38.47 4.17
1877 2534 4.262164 GCAGATCAAACACAAGGAAATGGT 60.262 41.667 0.00 0.00 0.00 3.55
1879 2536 4.873817 TGCAGATCAAACACAAGGAAATG 58.126 39.130 0.00 0.00 0.00 2.32
1880 2537 5.733620 ATGCAGATCAAACACAAGGAAAT 57.266 34.783 0.00 0.00 0.00 2.17
1881 2538 5.534207 AATGCAGATCAAACACAAGGAAA 57.466 34.783 0.00 0.00 0.00 3.13
1882 2539 5.291178 CAAATGCAGATCAAACACAAGGAA 58.709 37.500 0.00 0.00 0.00 3.36
1883 2540 4.796946 GCAAATGCAGATCAAACACAAGGA 60.797 41.667 0.00 0.00 41.59 3.36
1884 2541 3.430895 GCAAATGCAGATCAAACACAAGG 59.569 43.478 0.00 0.00 41.59 3.61
1885 2542 4.304110 AGCAAATGCAGATCAAACACAAG 58.696 39.130 8.28 0.00 45.16 3.16
1886 2543 4.038282 AGAGCAAATGCAGATCAAACACAA 59.962 37.500 8.28 0.00 45.16 3.33
1887 2544 3.570975 AGAGCAAATGCAGATCAAACACA 59.429 39.130 8.28 0.00 45.16 3.72
1888 2545 4.164294 GAGAGCAAATGCAGATCAAACAC 58.836 43.478 8.28 0.00 45.16 3.32
1889 2546 3.822167 TGAGAGCAAATGCAGATCAAACA 59.178 39.130 8.28 0.00 45.16 2.83
1890 2547 4.430137 TGAGAGCAAATGCAGATCAAAC 57.570 40.909 8.28 0.00 45.16 2.93
1891 2548 4.521639 ACTTGAGAGCAAATGCAGATCAAA 59.478 37.500 8.28 0.00 45.16 2.69
1892 2549 4.077108 ACTTGAGAGCAAATGCAGATCAA 58.923 39.130 8.28 12.41 45.16 2.57
1893 2550 3.439129 CACTTGAGAGCAAATGCAGATCA 59.561 43.478 8.28 5.74 45.16 2.92
1894 2551 3.439476 ACACTTGAGAGCAAATGCAGATC 59.561 43.478 8.28 3.22 45.16 2.75
1895 2552 3.418995 ACACTTGAGAGCAAATGCAGAT 58.581 40.909 8.28 0.00 45.16 2.90
1896 2553 2.810274 GACACTTGAGAGCAAATGCAGA 59.190 45.455 8.28 0.00 45.16 4.26
1897 2554 2.551032 TGACACTTGAGAGCAAATGCAG 59.449 45.455 8.28 0.00 45.16 4.41
1898 2555 2.551032 CTGACACTTGAGAGCAAATGCA 59.449 45.455 8.28 0.00 45.16 3.96
1899 2556 2.810274 TCTGACACTTGAGAGCAAATGC 59.190 45.455 0.00 0.00 34.76 3.56
1900 2557 4.063689 ACTCTGACACTTGAGAGCAAATG 58.936 43.478 0.00 0.00 39.57 2.32
1901 2558 4.348863 ACTCTGACACTTGAGAGCAAAT 57.651 40.909 0.00 0.00 39.57 2.32
1902 2559 3.827008 ACTCTGACACTTGAGAGCAAA 57.173 42.857 0.00 0.00 39.57 3.68
1903 2560 5.474578 AATACTCTGACACTTGAGAGCAA 57.525 39.130 0.00 0.00 39.57 3.91
1904 2561 5.476945 TGTAATACTCTGACACTTGAGAGCA 59.523 40.000 0.00 0.00 39.57 4.26
1905 2562 5.802956 GTGTAATACTCTGACACTTGAGAGC 59.197 44.000 0.00 0.00 39.57 4.09
1906 2563 6.151985 AGGTGTAATACTCTGACACTTGAGAG 59.848 42.308 4.56 0.00 42.50 3.20
1907 2564 6.010850 AGGTGTAATACTCTGACACTTGAGA 58.989 40.000 4.56 0.00 42.50 3.27
1908 2565 6.274157 AGGTGTAATACTCTGACACTTGAG 57.726 41.667 4.56 0.00 42.50 3.02
1909 2566 6.665992 AAGGTGTAATACTCTGACACTTGA 57.334 37.500 4.56 0.00 42.50 3.02
1920 2577 8.548877 ACCTACATGATCAAAAGGTGTAATACT 58.451 33.333 20.35 0.64 39.10 2.12
1942 2599 5.105064 GCAGAACAATGGAGTAGGTTACCTA 60.105 44.000 7.09 7.09 34.61 3.08
1945 2602 4.575885 TGCAGAACAATGGAGTAGGTTAC 58.424 43.478 0.00 0.00 0.00 2.50
1999 2656 9.919348 CCAACAACACAAATTAATTTTCAAGAG 57.081 29.630 10.77 1.89 0.00 2.85
2068 2725 7.040913 TGCCACTAGTACCTCCAGTATATAT 57.959 40.000 0.00 0.00 32.28 0.86
2114 2787 4.202357 ACTTGATGCACCAGACTACTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
2153 2826 4.853196 CGATGCTTCCAGTAACAAAATGTG 59.147 41.667 0.00 0.00 0.00 3.21
2245 2923 7.733501 TCCCCAATTAAACCTGTACCAAAATAA 59.266 33.333 0.00 0.00 0.00 1.40
2314 2992 1.486310 AGACTCACTGCTTCACCACAA 59.514 47.619 0.00 0.00 0.00 3.33
2434 3112 4.991153 TTGCCACACAAACATTGAAGTA 57.009 36.364 0.00 0.00 34.56 2.24
2449 3127 2.166254 CTGTGGGGATGTATTTTGCCAC 59.834 50.000 0.00 0.00 0.00 5.01
2468 3146 7.769507 ACAGCATTCATATTGATAGATAGGCTG 59.230 37.037 0.00 0.00 45.66 4.85
2640 3321 9.786105 GTCACCTACTTATAGAAGTTAGTTCAC 57.214 37.037 8.25 2.71 43.70 3.18
2649 3330 7.122948 ACAAGTCCTGTCACCTACTTATAGAAG 59.877 40.741 0.00 0.00 34.00 2.85
2660 3341 2.238646 TGTTCAACAAGTCCTGTCACCT 59.761 45.455 0.00 0.00 37.23 4.00
2666 3347 2.550978 ACGAGTGTTCAACAAGTCCTG 58.449 47.619 0.00 0.00 0.00 3.86
2670 3351 3.596214 AGACAACGAGTGTTCAACAAGT 58.404 40.909 0.00 0.00 41.96 3.16
2683 3364 3.727726 TGCATCAGAAAAGAGACAACGA 58.272 40.909 0.00 0.00 0.00 3.85
2713 3394 8.375506 AGTACATGACAAATTAAGAAGACCAGA 58.624 33.333 0.00 0.00 0.00 3.86
2752 3433 4.878397 GTCCAATCTTCACACAATAGAGGG 59.122 45.833 0.00 0.00 0.00 4.30
2760 3441 0.396435 AGCGGTCCAATCTTCACACA 59.604 50.000 0.00 0.00 0.00 3.72
2846 3527 3.204505 CCGAGTTGTTGCGGTAAGA 57.795 52.632 0.00 0.00 42.49 2.10
2856 3537 0.175760 AGCGCATGATACCGAGTTGT 59.824 50.000 11.47 0.00 0.00 3.32
2872 3553 0.238289 ATTGGTTTCAGTCGCAAGCG 59.762 50.000 8.36 8.36 41.35 4.68
2906 3587 6.566187 GCAGACTCATGTCATCATAAATCTGC 60.566 42.308 16.28 16.28 44.26 4.26
3034 3715 1.995484 CAGCACGTTCCATGTGACTAG 59.005 52.381 0.09 0.00 37.29 2.57
3079 3762 9.604626 GAAAATGAAGTGACTGAACTAAATCTG 57.395 33.333 0.00 0.00 0.00 2.90
3127 3810 8.655935 ACTCTAAATGAATTCCATTCTGGTTT 57.344 30.769 2.27 1.14 44.28 3.27
3157 3840 4.639078 AAAGCAGGCCCATTTTTGTTAT 57.361 36.364 0.00 0.00 0.00 1.89
3175 3858 8.220755 TCCGGTATGATTTCTGGAAAATAAAG 57.779 34.615 0.00 0.00 36.34 1.85
3184 3867 6.113411 ACTTAACTTCCGGTATGATTTCTGG 58.887 40.000 0.00 0.00 0.00 3.86
3197 3907 6.642950 CAGGAGCTATATGAACTTAACTTCCG 59.357 42.308 0.00 0.00 0.00 4.30
3235 3946 5.833406 TTTGTTGTTCATGAGCTCTTCAA 57.167 34.783 16.19 6.69 39.77 2.69
3339 4051 7.201644 CGAGTATTCCAAACTCATACTGCAAAT 60.202 37.037 4.32 0.00 42.91 2.32
3373 4087 7.047891 CACAATATTAAGTTAGAGGAGGCACA 58.952 38.462 0.00 0.00 0.00 4.57
3547 4266 4.464008 AGGCTGTTTTTCAGTGAAGATGA 58.536 39.130 5.56 0.00 45.23 2.92
3632 4351 6.316390 AGTGCTAGCTGGTGAAACATAATAAC 59.684 38.462 17.23 0.00 39.98 1.89
3641 4360 2.104792 ACTGAAGTGCTAGCTGGTGAAA 59.895 45.455 17.23 0.00 0.00 2.69
3664 4383 2.027192 TGACCCGGATTTTCAGAGAAGG 60.027 50.000 0.73 0.00 0.00 3.46
3833 4552 4.632153 AGGGATTTCACACTATATGCGAC 58.368 43.478 0.00 0.00 0.00 5.19
3838 4557 8.328758 TCACAAGAAAGGGATTTCACACTATAT 58.671 33.333 3.78 0.00 33.53 0.86
3924 4646 3.181464 TGCAATTGATGGTATGGCATTGG 60.181 43.478 10.34 0.00 27.09 3.16
3990 4719 8.734386 GGAGATATTTATTTCCTACAGCCAATG 58.266 37.037 0.96 0.00 34.91 2.82
3992 4721 7.147213 TGGGAGATATTTATTTCCTACAGCCAA 60.147 37.037 7.00 0.00 37.20 4.52
3993 4722 6.331572 TGGGAGATATTTATTTCCTACAGCCA 59.668 38.462 7.00 0.00 37.20 4.75
3994 4723 6.779860 TGGGAGATATTTATTTCCTACAGCC 58.220 40.000 7.00 0.00 37.20 4.85
3995 4724 8.103305 TCATGGGAGATATTTATTTCCTACAGC 58.897 37.037 7.00 0.00 37.20 4.40
4070 4799 7.354025 TGTTTGTACTTACATATGTTCACCG 57.646 36.000 14.77 1.29 35.89 4.94
4097 4826 6.314648 GCCAGCGAAGAATCATATCATCATTA 59.685 38.462 0.00 0.00 0.00 1.90
4115 4844 0.541392 ATGTGAAGTATGGCCAGCGA 59.459 50.000 13.05 0.00 0.00 4.93
4161 4893 2.616842 CCTTTGCGTCACCAACTAAAGT 59.383 45.455 0.00 0.00 32.33 2.66
4230 4962 1.480545 ACCAACACTGCAAAACTTCCC 59.519 47.619 0.00 0.00 0.00 3.97
4232 4964 4.105486 GAGAACCAACACTGCAAAACTTC 58.895 43.478 0.00 0.00 0.00 3.01
4243 4975 4.025145 CCAGTAGAAAACGAGAACCAACAC 60.025 45.833 0.00 0.00 0.00 3.32
4441 5173 3.815401 CCCTGTTGAACTTGTACTTCTGG 59.185 47.826 0.00 0.00 0.00 3.86
4493 5225 6.016777 GCATTCATGTATCTTCCAAAGGTAGG 60.017 42.308 0.00 0.00 0.00 3.18
4498 5230 6.032094 GTGTGCATTCATGTATCTTCCAAAG 58.968 40.000 0.00 0.00 0.00 2.77
4536 5268 5.572511 TGCAAATTATCACATCAAACGCTTC 59.427 36.000 0.00 0.00 0.00 3.86
4747 5480 8.763049 TCTTTTACATCAGACTAATGTGTCAG 57.237 34.615 1.09 0.00 37.86 3.51
4993 5726 8.903820 CCTACAATAATCTTTTAAAGGGTGAGG 58.096 37.037 4.77 0.00 0.00 3.86
5113 5846 8.517062 AGCATAAGAAACTTCTGCAATCTATT 57.483 30.769 18.66 0.49 37.65 1.73
5361 6096 5.897377 GGTCTTGCCTTCTTAAATTAGCA 57.103 39.130 0.00 0.00 0.00 3.49
5392 6127 4.833380 TGTACCCTATCTCATAGCAGGAAC 59.167 45.833 0.00 0.00 0.00 3.62
5413 6148 4.862641 ACTATTATTGCCACCTTCCTGT 57.137 40.909 0.00 0.00 0.00 4.00
5441 6177 2.027837 ACCAGCCATGAATTGAAAAGGC 60.028 45.455 0.00 0.00 42.31 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.