Multiple sequence alignment - TraesCS3A01G035600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G035600 chr3A 100.000 2774 0 0 1 2774 19761733 19758960 0.000000e+00 5123
1 TraesCS3A01G035600 chr3A 93.657 268 16 1 2240 2506 474832554 474832821 1.550000e-107 399
2 TraesCS3A01G035600 chr3D 88.341 1947 98 64 1 1915 17121079 17122928 0.000000e+00 2218
3 TraesCS3A01G035600 chr3D 81.419 296 17 10 1913 2196 17122980 17123249 1.010000e-49 207
4 TraesCS3A01G035600 chr3B 87.099 1589 109 48 365 1915 24522816 24524346 0.000000e+00 1711
5 TraesCS3A01G035600 chr3B 91.365 359 26 4 1458 1815 24546359 24546713 1.150000e-133 486
6 TraesCS3A01G035600 chr3B 89.196 398 22 8 523 919 69601603 69601226 6.950000e-131 477
7 TraesCS3A01G035600 chr3B 86.684 383 36 8 1 372 24522138 24522516 7.150000e-111 411
8 TraesCS3A01G035600 chr3B 87.838 148 10 5 2052 2196 24526013 24526155 1.710000e-37 167
9 TraesCS3A01G035600 chr3B 83.696 184 10 10 1978 2159 24552421 24552586 3.700000e-34 156
10 TraesCS3A01G035600 chr3B 92.157 102 6 1 1814 1915 24552195 24552294 2.880000e-30 143
11 TraesCS3A01G035600 chr3B 84.821 112 13 1 2648 2755 24552818 24552929 2.920000e-20 110
12 TraesCS3A01G035600 chr3B 81.481 135 16 2 2648 2773 24526210 24526344 4.890000e-18 102
13 TraesCS3A01G035600 chr5D 88.861 395 23 7 523 917 151215903 151215530 1.500000e-127 466
14 TraesCS3A01G035600 chr5D 86.239 327 23 8 593 919 546563966 546563662 4.430000e-88 335
15 TraesCS3A01G035600 chr5D 84.472 322 28 12 599 919 396231991 396231691 5.810000e-77 298
16 TraesCS3A01G035600 chr4D 88.161 397 27 8 523 919 27524250 27524626 3.260000e-124 455
17 TraesCS3A01G035600 chr5B 87.245 392 28 6 529 919 405547200 405546830 7.100000e-116 427
18 TraesCS3A01G035600 chr7B 86.835 395 30 8 523 916 165109143 165109516 3.300000e-114 422
19 TraesCS3A01G035600 chr6A 93.116 276 19 0 2243 2518 524227663 524227938 3.330000e-109 405
20 TraesCS3A01G035600 chr6A 93.407 273 18 0 2246 2518 524253151 524252879 3.330000e-109 405
21 TraesCS3A01G035600 chr6A 93.939 264 15 1 2244 2506 65686643 65686906 5.570000e-107 398
22 TraesCS3A01G035600 chr4A 94.297 263 14 1 2247 2508 641546265 641546527 4.300000e-108 401
23 TraesCS3A01G035600 chr1A 93.680 269 16 1 2243 2511 306705100 306704833 4.300000e-108 401
24 TraesCS3A01G035600 chr1A 94.297 263 14 1 2247 2508 515768879 515769141 4.300000e-108 401
25 TraesCS3A01G035600 chr1A 93.962 265 15 1 2244 2507 15732348 15732612 1.550000e-107 399
26 TraesCS3A01G035600 chr5A 93.939 264 14 1 2246 2507 480480117 480480380 5.570000e-107 398
27 TraesCS3A01G035600 chr2B 84.887 397 28 11 523 919 690757883 690758247 3.370000e-99 372
28 TraesCS3A01G035600 chr7D 84.848 330 25 10 594 921 24390489 24390795 2.680000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G035600 chr3A 19758960 19761733 2773 True 5123.00 5123 100.0000 1 2774 1 chr3A.!!$R1 2773
1 TraesCS3A01G035600 chr3D 17121079 17123249 2170 False 1212.50 2218 84.8800 1 2196 2 chr3D.!!$F1 2195
2 TraesCS3A01G035600 chr3B 24522138 24526344 4206 False 597.75 1711 85.7755 1 2773 4 chr3B.!!$F2 2772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 282 0.24445 ATTCCGCCATGTTTGTGCTG 59.756 50.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2363 0.45826 AACGACACAACCAAAAGGGC 59.542 50.0 0.0 0.0 42.05 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.112297 TTTCACCACTCCGGGCAC 59.888 61.111 0.00 0.00 40.22 5.01
41 42 2.672996 CGGGCACAAGGGACAAGG 60.673 66.667 0.00 0.00 0.00 3.61
123 127 1.079266 GCAGAGAGCAGACACCAGG 60.079 63.158 0.00 0.00 44.79 4.45
157 161 1.078708 GGATTTCCCTGTTCCGCGA 60.079 57.895 8.23 0.00 0.00 5.87
165 169 1.741401 CTGTTCCGCGATGCAGGAA 60.741 57.895 8.23 1.16 36.76 3.36
170 174 3.204827 CGCGATGCAGGAAAGGGG 61.205 66.667 0.00 0.00 0.00 4.79
177 181 2.606587 GCAGGAAAGGGGAGGAGCA 61.607 63.158 0.00 0.00 0.00 4.26
196 200 2.224314 GCAAACCTTCCTCTTCTGTTCG 59.776 50.000 0.00 0.00 0.00 3.95
272 282 0.244450 ATTCCGCCATGTTTGTGCTG 59.756 50.000 0.00 0.00 0.00 4.41
285 295 0.826715 TGTGCTGGATCCTACTGCTC 59.173 55.000 14.23 12.58 34.40 4.26
317 332 3.885976 TGGAGACAGGGACTAGATAGG 57.114 52.381 0.00 0.00 36.02 2.57
348 363 4.456911 CCATGATATTCTGTTCCATTCCGG 59.543 45.833 0.00 0.00 0.00 5.14
349 364 4.085357 TGATATTCTGTTCCATTCCGGG 57.915 45.455 0.00 0.00 34.36 5.73
350 365 3.181445 TGATATTCTGTTCCATTCCGGGG 60.181 47.826 0.00 0.00 34.36 5.73
357 372 2.035626 CCATTCCGGGGCAAGTGT 59.964 61.111 0.00 0.00 0.00 3.55
359 374 1.303236 CATTCCGGGGCAAGTGTGA 60.303 57.895 0.00 0.00 0.00 3.58
360 375 1.002134 ATTCCGGGGCAAGTGTGAG 60.002 57.895 0.00 0.00 0.00 3.51
361 376 3.842925 TTCCGGGGCAAGTGTGAGC 62.843 63.158 0.00 0.00 0.00 4.26
362 377 4.335647 CCGGGGCAAGTGTGAGCT 62.336 66.667 0.00 0.00 0.00 4.09
363 378 3.052082 CGGGGCAAGTGTGAGCTG 61.052 66.667 0.00 0.00 0.00 4.24
383 704 2.201436 CTGAGCCTGCTTGCTTGCTG 62.201 60.000 12.51 2.96 42.95 4.41
384 705 1.970114 GAGCCTGCTTGCTTGCTGA 60.970 57.895 12.51 0.00 42.95 4.26
470 795 1.397190 GCATCGCGATTTGTATCCGTG 60.397 52.381 21.14 6.77 0.00 4.94
482 807 3.537580 TGTATCCGTGCCCAACTAATTC 58.462 45.455 0.00 0.00 0.00 2.17
508 833 2.453521 ACGATGTGACCTAAGTGGCTA 58.546 47.619 0.00 0.00 40.22 3.93
513 838 6.046593 CGATGTGACCTAAGTGGCTAATTAA 58.953 40.000 0.00 0.00 40.22 1.40
514 839 6.537301 CGATGTGACCTAAGTGGCTAATTAAA 59.463 38.462 0.00 0.00 40.22 1.52
527 858 8.246180 AGTGGCTAATTAAAATCAATCAGTGTG 58.754 33.333 0.00 0.00 0.00 3.82
553 884 6.230472 TGAAATCTTCCAACGAGATTCAGAA 58.770 36.000 0.00 0.00 41.66 3.02
591 922 3.315749 AGGCGAGAAGTAAACTAGGATCG 59.684 47.826 0.00 0.00 0.00 3.69
618 949 1.005805 TGTAGGTTGATGCTTGGCCAT 59.994 47.619 6.09 0.00 0.00 4.40
679 1018 0.885196 GAGCTACTCCTCCTATGCCG 59.115 60.000 0.00 0.00 0.00 5.69
686 1025 2.158900 ACTCCTCCTATGCCGTTCATTG 60.159 50.000 0.00 0.00 36.63 2.82
689 1028 1.860950 CTCCTATGCCGTTCATTGACG 59.139 52.381 0.00 0.00 42.43 4.35
690 1029 1.206132 TCCTATGCCGTTCATTGACGT 59.794 47.619 0.00 0.00 41.26 4.34
691 1030 2.427812 TCCTATGCCGTTCATTGACGTA 59.572 45.455 0.00 0.00 41.26 3.57
692 1031 2.794910 CCTATGCCGTTCATTGACGTAG 59.205 50.000 0.00 2.62 41.26 3.51
875 1214 3.625897 CCCTCCGCACCACACTCA 61.626 66.667 0.00 0.00 0.00 3.41
879 1218 2.972505 CCGCACCACACTCACCAC 60.973 66.667 0.00 0.00 0.00 4.16
880 1219 2.203001 CGCACCACACTCACCACA 60.203 61.111 0.00 0.00 0.00 4.17
910 1249 6.732896 ATTTATATCCACGTTCCTCTCACT 57.267 37.500 0.00 0.00 0.00 3.41
960 1299 4.397481 TCGCATTCTGAATCTCTGACAT 57.603 40.909 0.00 0.00 0.00 3.06
961 1300 4.763073 TCGCATTCTGAATCTCTGACATT 58.237 39.130 0.00 0.00 0.00 2.71
962 1301 4.569564 TCGCATTCTGAATCTCTGACATTG 59.430 41.667 0.00 0.00 0.00 2.82
963 1302 4.569564 CGCATTCTGAATCTCTGACATTGA 59.430 41.667 0.00 0.00 0.00 2.57
964 1303 5.502058 CGCATTCTGAATCTCTGACATTGAC 60.502 44.000 0.00 0.00 0.00 3.18
965 1304 5.353400 GCATTCTGAATCTCTGACATTGACA 59.647 40.000 0.00 0.00 0.00 3.58
966 1305 6.128090 GCATTCTGAATCTCTGACATTGACAA 60.128 38.462 0.00 0.00 0.00 3.18
967 1306 7.465173 CATTCTGAATCTCTGACATTGACAAG 58.535 38.462 0.00 0.00 0.00 3.16
973 1312 8.150296 TGAATCTCTGACATTGACAAGAACTTA 58.850 33.333 0.00 0.00 0.00 2.24
977 1316 7.987458 TCTCTGACATTGACAAGAACTTACTTT 59.013 33.333 0.00 0.00 0.00 2.66
985 1324 3.889538 ACAAGAACTTACTTTCCCTTGCC 59.110 43.478 0.00 0.00 35.67 4.52
996 1335 1.227674 CCCTTGCCGATCCAGTAGC 60.228 63.158 0.00 0.00 0.00 3.58
997 1336 1.592669 CCTTGCCGATCCAGTAGCG 60.593 63.158 0.00 0.00 36.54 4.26
998 1337 1.437573 CTTGCCGATCCAGTAGCGA 59.562 57.895 0.00 0.00 40.11 4.93
1095 1440 2.432456 GCAGCGACGACATGTCCA 60.432 61.111 20.03 0.00 45.23 4.02
1097 1442 1.807165 CAGCGACGACATGTCCAGG 60.807 63.158 20.03 8.85 45.23 4.45
1098 1443 3.188786 GCGACGACATGTCCAGGC 61.189 66.667 20.03 15.59 45.23 4.85
1101 1446 1.741770 GACGACATGTCCAGGCACC 60.742 63.158 20.03 0.00 42.04 5.01
1104 1449 1.376466 GACATGTCCAGGCACCACT 59.624 57.895 15.31 0.00 0.00 4.00
1106 1451 1.130054 ACATGTCCAGGCACCACTCT 61.130 55.000 0.00 0.00 0.00 3.24
1109 1454 2.527624 TCCAGGCACCACTCTGCT 60.528 61.111 0.00 0.00 37.33 4.24
1110 1455 2.149383 TCCAGGCACCACTCTGCTT 61.149 57.895 0.00 0.00 37.33 3.91
1278 1623 4.208686 CTGCCGCCGACTACTCCC 62.209 72.222 0.00 0.00 0.00 4.30
1282 1627 2.754658 CGCCGACTACTCCCCACT 60.755 66.667 0.00 0.00 0.00 4.00
1284 1629 1.681327 GCCGACTACTCCCCACTCA 60.681 63.158 0.00 0.00 0.00 3.41
1785 2142 7.437793 GGTAACCAGATAGTAGTACTAGCAG 57.562 44.000 23.73 17.07 39.41 4.24
1786 2143 6.997476 GGTAACCAGATAGTAGTACTAGCAGT 59.003 42.308 23.73 17.96 39.41 4.40
1788 2145 6.945938 ACCAGATAGTAGTACTAGCAGTTG 57.054 41.667 23.73 14.70 39.41 3.16
1832 2195 7.010183 ACTCGTTAATTACTGATTGATTGTCCG 59.990 37.037 0.00 0.00 0.00 4.79
1843 2206 2.240612 GATTGTCCGCTTGTCGCCAC 62.241 60.000 0.00 0.00 36.73 5.01
1844 2207 2.731691 ATTGTCCGCTTGTCGCCACT 62.732 55.000 0.00 0.00 36.73 4.00
1861 2224 3.564225 GCCACTGTTGCTTGTAAGTAAGT 59.436 43.478 0.00 0.00 31.23 2.24
1862 2225 4.753107 GCCACTGTTGCTTGTAAGTAAGTA 59.247 41.667 0.00 0.00 31.23 2.24
1863 2226 5.333875 GCCACTGTTGCTTGTAAGTAAGTAC 60.334 44.000 0.00 0.00 31.23 2.73
1944 2363 2.838467 GCATGGGATGGGAGGAGGG 61.838 68.421 0.00 0.00 0.00 4.30
1976 2395 0.753867 TGTCGTTGGTTAGTGGCAGA 59.246 50.000 0.00 0.00 0.00 4.26
1986 2446 0.250234 TAGTGGCAGAGCATGTGGTC 59.750 55.000 4.11 4.11 42.47 4.02
2013 2473 3.092301 GGGAGGAAAGAAAGACCATTGG 58.908 50.000 0.00 0.00 0.00 3.16
2023 2483 3.080647 GACCATTGGTCCGATCCAC 57.919 57.895 23.00 0.00 46.19 4.02
2037 3940 1.067821 GATCCACCATGAGAGACCGAC 59.932 57.143 0.00 0.00 0.00 4.79
2053 3956 4.334118 ACGGAGTGCATGGCAGCA 62.334 61.111 7.40 7.40 42.51 4.41
2112 4015 3.297620 CTGGGCTTGCTTGGCGTT 61.298 61.111 0.00 0.00 0.00 4.84
2147 4058 1.278172 CTCTCGCACGGAACACACAG 61.278 60.000 0.00 0.00 0.00 3.66
2149 4060 1.548973 CTCGCACGGAACACACAGTC 61.549 60.000 0.00 0.00 0.00 3.51
2156 4067 4.055360 CACGGAACACACAGTCTTATTGA 58.945 43.478 0.00 0.00 0.00 2.57
2157 4068 4.056050 ACGGAACACACAGTCTTATTGAC 58.944 43.478 0.00 0.00 45.67 3.18
2175 4088 6.932356 ATTGACTTGCAAGTGGTATCATAG 57.068 37.500 35.67 4.29 40.42 2.23
2196 4109 9.889128 TCATAGTTTATCATGTGTCAATCAAGA 57.111 29.630 0.00 0.00 0.00 3.02
2199 4112 8.627208 AGTTTATCATGTGTCAATCAAGAAGT 57.373 30.769 0.00 0.00 0.00 3.01
2200 4113 8.509690 AGTTTATCATGTGTCAATCAAGAAGTG 58.490 33.333 0.00 0.00 0.00 3.16
2201 4114 7.984422 TTATCATGTGTCAATCAAGAAGTGT 57.016 32.000 0.00 0.00 0.00 3.55
2203 4116 5.367302 TCATGTGTCAATCAAGAAGTGTCA 58.633 37.500 0.00 0.00 0.00 3.58
2205 4118 5.929697 TGTGTCAATCAAGAAGTGTCATC 57.070 39.130 0.00 0.00 0.00 2.92
2206 4119 5.367302 TGTGTCAATCAAGAAGTGTCATCA 58.633 37.500 0.00 0.00 0.00 3.07
2208 4121 6.072893 TGTGTCAATCAAGAAGTGTCATCATG 60.073 38.462 0.00 0.00 0.00 3.07
2209 4122 5.106436 TGTCAATCAAGAAGTGTCATCATGC 60.106 40.000 0.00 0.00 0.00 4.06
2210 4123 4.397103 TCAATCAAGAAGTGTCATCATGCC 59.603 41.667 0.00 0.00 0.00 4.40
2211 4124 2.715046 TCAAGAAGTGTCATCATGCCC 58.285 47.619 0.00 0.00 0.00 5.36
2212 4125 1.399440 CAAGAAGTGTCATCATGCCCG 59.601 52.381 0.00 0.00 0.00 6.13
2213 4126 0.904649 AGAAGTGTCATCATGCCCGA 59.095 50.000 0.00 0.00 0.00 5.14
2215 4128 0.904649 AAGTGTCATCATGCCCGAGA 59.095 50.000 0.00 0.00 0.00 4.04
2216 4129 0.463204 AGTGTCATCATGCCCGAGAG 59.537 55.000 0.00 0.00 0.00 3.20
2218 4131 1.953138 GTCATCATGCCCGAGAGCG 60.953 63.158 0.00 0.00 34.65 5.03
2229 4142 3.794690 CGAGAGCGGAACTTCAGAA 57.205 52.632 0.00 0.00 0.00 3.02
2230 4143 2.065993 CGAGAGCGGAACTTCAGAAA 57.934 50.000 0.00 0.00 0.00 2.52
2231 4144 2.404215 CGAGAGCGGAACTTCAGAAAA 58.596 47.619 0.00 0.00 0.00 2.29
2232 4145 2.155924 CGAGAGCGGAACTTCAGAAAAC 59.844 50.000 0.00 0.00 0.00 2.43
2233 4146 3.131396 GAGAGCGGAACTTCAGAAAACA 58.869 45.455 0.00 0.00 0.00 2.83
2234 4147 3.541632 AGAGCGGAACTTCAGAAAACAA 58.458 40.909 0.00 0.00 0.00 2.83
2235 4148 3.561725 AGAGCGGAACTTCAGAAAACAAG 59.438 43.478 0.00 0.00 0.00 3.16
2236 4149 3.541632 AGCGGAACTTCAGAAAACAAGA 58.458 40.909 0.00 0.00 0.00 3.02
2237 4150 3.561725 AGCGGAACTTCAGAAAACAAGAG 59.438 43.478 0.00 0.00 0.00 2.85
2238 4151 3.560068 GCGGAACTTCAGAAAACAAGAGA 59.440 43.478 0.00 0.00 0.00 3.10
2239 4152 4.319118 GCGGAACTTCAGAAAACAAGAGAG 60.319 45.833 0.00 0.00 0.00 3.20
2240 4153 4.811557 CGGAACTTCAGAAAACAAGAGAGT 59.188 41.667 0.00 0.00 0.00 3.24
2241 4154 5.983720 CGGAACTTCAGAAAACAAGAGAGTA 59.016 40.000 0.00 0.00 0.00 2.59
2242 4155 6.647067 CGGAACTTCAGAAAACAAGAGAGTAT 59.353 38.462 0.00 0.00 0.00 2.12
2243 4156 7.813148 CGGAACTTCAGAAAACAAGAGAGTATA 59.187 37.037 0.00 0.00 0.00 1.47
2244 4157 9.660180 GGAACTTCAGAAAACAAGAGAGTATAT 57.340 33.333 0.00 0.00 0.00 0.86
2259 4172 4.031636 AGTATATGTACTCCCTCCGGTC 57.968 50.000 0.00 0.00 36.41 4.79
2260 4173 2.305858 ATATGTACTCCCTCCGGTCC 57.694 55.000 0.00 0.00 0.00 4.46
2261 4174 1.229131 TATGTACTCCCTCCGGTCCT 58.771 55.000 0.00 0.00 0.00 3.85
2262 4175 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
2263 4176 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
2264 4177 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
2265 4178 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2266 4179 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2267 4180 2.558974 ACTCCCTCCGGTCCTTTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
2268 4181 2.917600 ACTCCCTCCGGTCCTTTTTATT 59.082 45.455 0.00 0.00 0.00 1.40
2269 4182 3.054582 ACTCCCTCCGGTCCTTTTTATTC 60.055 47.826 0.00 0.00 0.00 1.75
2270 4183 3.187112 TCCCTCCGGTCCTTTTTATTCT 58.813 45.455 0.00 0.00 0.00 2.40
2271 4184 3.054655 TCCCTCCGGTCCTTTTTATTCTG 60.055 47.826 0.00 0.00 0.00 3.02
2272 4185 2.683362 CCTCCGGTCCTTTTTATTCTGC 59.317 50.000 0.00 0.00 0.00 4.26
2273 4186 3.343617 CTCCGGTCCTTTTTATTCTGCA 58.656 45.455 0.00 0.00 0.00 4.41
2274 4187 3.947834 CTCCGGTCCTTTTTATTCTGCAT 59.052 43.478 0.00 0.00 0.00 3.96
2275 4188 5.105567 TCCGGTCCTTTTTATTCTGCATA 57.894 39.130 0.00 0.00 0.00 3.14
2276 4189 5.690865 TCCGGTCCTTTTTATTCTGCATAT 58.309 37.500 0.00 0.00 0.00 1.78
2277 4190 6.126409 TCCGGTCCTTTTTATTCTGCATATT 58.874 36.000 0.00 0.00 0.00 1.28
2278 4191 7.284074 TCCGGTCCTTTTTATTCTGCATATTA 58.716 34.615 0.00 0.00 0.00 0.98
2279 4192 7.776030 TCCGGTCCTTTTTATTCTGCATATTAA 59.224 33.333 0.00 0.00 0.00 1.40
2280 4193 8.410141 CCGGTCCTTTTTATTCTGCATATTAAA 58.590 33.333 0.00 0.00 0.00 1.52
2281 4194 9.796120 CGGTCCTTTTTATTCTGCATATTAAAA 57.204 29.630 7.45 7.45 0.00 1.52
2294 4207 9.671279 TCTGCATATTAAAATTCTCTGAAGTCA 57.329 29.630 0.00 0.00 0.00 3.41
2319 4232 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
2320 4233 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
2321 4234 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
2322 4235 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
2325 4238 9.438228 TCACAAAGTTTGACCGTATTTATATGA 57.562 29.630 22.23 7.49 0.00 2.15
2419 4332 6.542574 TGATTTCAAATTGTGAATGTTGGC 57.457 33.333 0.00 0.00 45.71 4.52
2420 4333 6.053650 TGATTTCAAATTGTGAATGTTGGCA 58.946 32.000 0.00 0.00 45.71 4.92
2421 4334 5.731599 TTTCAAATTGTGAATGTTGGCAC 57.268 34.783 0.00 0.00 45.71 5.01
2422 4335 4.669206 TCAAATTGTGAATGTTGGCACT 57.331 36.364 0.00 0.00 36.05 4.40
2423 4336 5.021033 TCAAATTGTGAATGTTGGCACTT 57.979 34.783 0.00 0.00 36.05 3.16
2424 4337 5.426504 TCAAATTGTGAATGTTGGCACTTT 58.573 33.333 0.00 0.00 36.05 2.66
2425 4338 5.879223 TCAAATTGTGAATGTTGGCACTTTT 59.121 32.000 0.00 0.00 36.05 2.27
2426 4339 6.373774 TCAAATTGTGAATGTTGGCACTTTTT 59.626 30.769 0.00 0.00 36.05 1.94
2456 4369 4.870221 GTTGGTCAAACTTTACGTGACT 57.130 40.909 0.00 0.00 41.17 3.41
2457 4370 5.225899 GTTGGTCAAACTTTACGTGACTT 57.774 39.130 0.00 0.00 41.17 3.01
2458 4371 4.868450 TGGTCAAACTTTACGTGACTTG 57.132 40.909 0.00 0.00 41.17 3.16
2459 4372 4.505808 TGGTCAAACTTTACGTGACTTGA 58.494 39.130 0.00 0.00 41.17 3.02
2460 4373 4.330620 TGGTCAAACTTTACGTGACTTGAC 59.669 41.667 15.36 15.36 41.17 3.18
2461 4374 4.569564 GGTCAAACTTTACGTGACTTGACT 59.430 41.667 19.64 0.00 41.40 3.41
2462 4375 5.064325 GGTCAAACTTTACGTGACTTGACTT 59.936 40.000 19.64 0.00 41.40 3.01
2463 4376 6.183324 GTCAAACTTTACGTGACTTGACTTC 58.817 40.000 15.96 0.00 39.54 3.01
2464 4377 5.870433 TCAAACTTTACGTGACTTGACTTCA 59.130 36.000 0.00 0.00 0.00 3.02
2465 4378 6.369340 TCAAACTTTACGTGACTTGACTTCAA 59.631 34.615 0.00 0.00 0.00 2.69
2466 4379 6.920569 AACTTTACGTGACTTGACTTCAAT 57.079 33.333 0.00 0.00 35.02 2.57
2467 4380 6.526566 ACTTTACGTGACTTGACTTCAATC 57.473 37.500 0.00 0.00 35.02 2.67
2468 4381 6.046593 ACTTTACGTGACTTGACTTCAATCA 58.953 36.000 0.00 0.00 35.02 2.57
2469 4382 6.537301 ACTTTACGTGACTTGACTTCAATCAA 59.463 34.615 0.00 0.00 37.08 2.57
2470 4383 6.912203 TTACGTGACTTGACTTCAATCAAA 57.088 33.333 0.00 0.00 38.12 2.69
2471 4384 7.490962 TTACGTGACTTGACTTCAATCAAAT 57.509 32.000 0.00 0.00 38.12 2.32
2472 4385 5.990408 ACGTGACTTGACTTCAATCAAATC 58.010 37.500 0.00 0.00 38.12 2.17
2473 4386 5.760253 ACGTGACTTGACTTCAATCAAATCT 59.240 36.000 0.00 0.00 36.14 2.40
2474 4387 6.260936 ACGTGACTTGACTTCAATCAAATCTT 59.739 34.615 0.00 0.00 36.14 2.40
2475 4388 7.441157 ACGTGACTTGACTTCAATCAAATCTTA 59.559 33.333 0.00 0.00 36.14 2.10
2476 4389 8.446273 CGTGACTTGACTTCAATCAAATCTTAT 58.554 33.333 0.00 0.00 36.14 1.73
2481 4394 9.378597 CTTGACTTCAATCAAATCTTATATGCG 57.621 33.333 0.00 0.00 38.12 4.73
2482 4395 8.661352 TGACTTCAATCAAATCTTATATGCGA 57.339 30.769 0.00 0.00 0.00 5.10
2483 4396 9.108284 TGACTTCAATCAAATCTTATATGCGAA 57.892 29.630 0.00 0.00 0.00 4.70
2484 4397 9.935682 GACTTCAATCAAATCTTATATGCGAAA 57.064 29.630 0.00 0.00 0.00 3.46
2496 4409 7.857569 TCTTATATGCGAAATAAAAAGGACCG 58.142 34.615 0.00 0.00 0.00 4.79
2497 4410 7.711772 TCTTATATGCGAAATAAAAAGGACCGA 59.288 33.333 0.00 0.00 0.00 4.69
2498 4411 6.687081 ATATGCGAAATAAAAAGGACCGAA 57.313 33.333 0.00 0.00 0.00 4.30
2499 4412 4.413495 TGCGAAATAAAAAGGACCGAAG 57.587 40.909 0.00 0.00 0.00 3.79
2516 4429 4.303086 CGAAGGGAGTACATAATCGTGT 57.697 45.455 0.00 0.00 36.13 4.49
2517 4430 4.042398 CGAAGGGAGTACATAATCGTGTG 58.958 47.826 0.00 0.00 33.62 3.82
2518 4431 3.454371 AGGGAGTACATAATCGTGTGC 57.546 47.619 0.00 0.00 35.30 4.57
2519 4432 3.031736 AGGGAGTACATAATCGTGTGCT 58.968 45.455 0.00 0.00 45.76 4.40
2520 4433 3.451178 AGGGAGTACATAATCGTGTGCTT 59.549 43.478 0.00 0.00 43.63 3.91
2521 4434 3.555956 GGGAGTACATAATCGTGTGCTTG 59.444 47.826 0.00 0.00 43.63 4.01
2522 4435 4.181578 GGAGTACATAATCGTGTGCTTGT 58.818 43.478 0.00 0.00 43.63 3.16
2523 4436 4.630069 GGAGTACATAATCGTGTGCTTGTT 59.370 41.667 0.00 0.00 43.63 2.83
2524 4437 5.121768 GGAGTACATAATCGTGTGCTTGTTT 59.878 40.000 0.00 0.00 43.63 2.83
2525 4438 5.927030 AGTACATAATCGTGTGCTTGTTTG 58.073 37.500 0.00 0.00 41.37 2.93
2526 4439 4.159377 ACATAATCGTGTGCTTGTTTGG 57.841 40.909 0.00 0.00 0.00 3.28
2527 4440 3.568007 ACATAATCGTGTGCTTGTTTGGT 59.432 39.130 0.00 0.00 0.00 3.67
2528 4441 2.490328 AATCGTGTGCTTGTTTGGTG 57.510 45.000 0.00 0.00 0.00 4.17
2529 4442 0.030638 ATCGTGTGCTTGTTTGGTGC 59.969 50.000 0.00 0.00 0.00 5.01
2530 4443 1.938814 CGTGTGCTTGTTTGGTGCG 60.939 57.895 0.00 0.00 0.00 5.34
2531 4444 2.103934 TGTGCTTGTTTGGTGCGC 59.896 55.556 0.00 0.00 37.67 6.09
2532 4445 2.103934 GTGCTTGTTTGGTGCGCA 59.896 55.556 5.66 5.66 37.20 6.09
2533 4446 1.518133 GTGCTTGTTTGGTGCGCAA 60.518 52.632 14.00 0.00 37.20 4.85
2534 4447 1.226916 TGCTTGTTTGGTGCGCAAG 60.227 52.632 14.00 4.88 41.61 4.01
2535 4448 1.065600 GCTTGTTTGGTGCGCAAGA 59.934 52.632 14.00 0.00 41.31 3.02
2536 4449 1.208642 GCTTGTTTGGTGCGCAAGAC 61.209 55.000 14.00 9.26 41.31 3.01
2537 4450 0.929824 CTTGTTTGGTGCGCAAGACG 60.930 55.000 14.00 0.00 41.31 4.18
2538 4451 1.649390 TTGTTTGGTGCGCAAGACGT 61.649 50.000 14.00 0.00 46.11 4.34
2539 4452 1.368850 GTTTGGTGCGCAAGACGTC 60.369 57.895 14.00 7.70 46.11 4.34
2540 4453 1.815840 TTTGGTGCGCAAGACGTCA 60.816 52.632 14.00 0.82 46.11 4.35
2541 4454 1.771073 TTTGGTGCGCAAGACGTCAG 61.771 55.000 14.00 11.01 46.11 3.51
2542 4455 2.661866 GGTGCGCAAGACGTCAGT 60.662 61.111 14.00 1.54 46.11 3.41
2576 4489 0.516877 CACTTTGCAAGCGATCCGAA 59.483 50.000 0.00 0.00 0.00 4.30
2577 4490 0.798776 ACTTTGCAAGCGATCCGAAG 59.201 50.000 0.00 0.00 0.00 3.79
2581 4494 1.745489 GCAAGCGATCCGAAGGGTT 60.745 57.895 0.00 0.00 39.56 4.11
2582 4495 1.305930 GCAAGCGATCCGAAGGGTTT 61.306 55.000 0.00 0.00 39.56 3.27
2583 4496 0.727398 CAAGCGATCCGAAGGGTTTC 59.273 55.000 0.00 0.00 39.56 2.78
2584 4497 0.392595 AAGCGATCCGAAGGGTTTCC 60.393 55.000 0.00 0.00 39.56 3.13
2585 4498 1.221021 GCGATCCGAAGGGTTTCCT 59.779 57.895 0.00 0.00 39.56 3.36
2586 4499 0.810426 GCGATCCGAAGGGTTTCCTC 60.810 60.000 0.00 0.00 39.56 3.71
2587 4500 0.527817 CGATCCGAAGGGTTTCCTCG 60.528 60.000 0.00 0.00 39.56 4.63
2588 4501 0.535797 GATCCGAAGGGTTTCCTCGT 59.464 55.000 0.00 0.00 39.56 4.18
2589 4502 1.753073 GATCCGAAGGGTTTCCTCGTA 59.247 52.381 0.00 0.00 39.56 3.43
2590 4503 1.479730 ATCCGAAGGGTTTCCTCGTAC 59.520 52.381 0.00 0.00 39.56 3.67
2591 4504 2.887229 ATCCGAAGGGTTTCCTCGTACT 60.887 50.000 0.00 0.00 39.56 2.73
2592 4505 2.738013 CGAAGGGTTTCCTCGTACTT 57.262 50.000 0.00 0.00 44.07 2.24
2593 4506 2.334838 CGAAGGGTTTCCTCGTACTTG 58.665 52.381 0.00 0.00 44.07 3.16
2594 4507 2.074576 GAAGGGTTTCCTCGTACTTGC 58.925 52.381 0.00 0.00 44.07 4.01
2595 4508 1.053424 AGGGTTTCCTCGTACTTGCA 58.947 50.000 0.00 0.00 39.80 4.08
2596 4509 1.628846 AGGGTTTCCTCGTACTTGCAT 59.371 47.619 0.00 0.00 39.80 3.96
2597 4510 2.039879 AGGGTTTCCTCGTACTTGCATT 59.960 45.455 0.00 0.00 39.80 3.56
2598 4511 2.418976 GGGTTTCCTCGTACTTGCATTC 59.581 50.000 0.00 0.00 0.00 2.67
2599 4512 3.335579 GGTTTCCTCGTACTTGCATTCT 58.664 45.455 0.00 0.00 0.00 2.40
2600 4513 3.751698 GGTTTCCTCGTACTTGCATTCTT 59.248 43.478 0.00 0.00 0.00 2.52
2601 4514 4.142881 GGTTTCCTCGTACTTGCATTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
2602 4515 2.876091 TCCTCGTACTTGCATTCTTCG 58.124 47.619 0.00 0.00 0.00 3.79
2603 4516 1.324736 CCTCGTACTTGCATTCTTCGC 59.675 52.381 0.00 0.00 0.00 4.70
2604 4517 0.989164 TCGTACTTGCATTCTTCGCG 59.011 50.000 0.00 0.00 0.00 5.87
2605 4518 0.025001 CGTACTTGCATTCTTCGCGG 59.975 55.000 6.13 0.00 0.00 6.46
2606 4519 0.247695 GTACTTGCATTCTTCGCGGC 60.248 55.000 6.13 0.00 0.00 6.53
2607 4520 1.692148 TACTTGCATTCTTCGCGGCG 61.692 55.000 17.70 17.70 0.00 6.46
2608 4521 3.027170 CTTGCATTCTTCGCGGCGT 62.027 57.895 22.90 0.00 0.00 5.68
2609 4522 3.307505 TTGCATTCTTCGCGGCGTG 62.308 57.895 22.90 15.42 0.00 5.34
2610 4523 3.788766 GCATTCTTCGCGGCGTGT 61.789 61.111 22.90 0.00 0.00 4.49
2611 4524 2.860293 CATTCTTCGCGGCGTGTT 59.140 55.556 22.90 6.44 0.00 3.32
2612 4525 1.225745 CATTCTTCGCGGCGTGTTC 60.226 57.895 22.90 0.00 0.00 3.18
2613 4526 2.388232 ATTCTTCGCGGCGTGTTCC 61.388 57.895 22.90 0.00 0.00 3.62
2614 4527 3.793775 TTCTTCGCGGCGTGTTCCA 62.794 57.895 22.90 0.00 0.00 3.53
2615 4528 3.777925 CTTCGCGGCGTGTTCCAG 61.778 66.667 22.90 8.60 0.00 3.86
2616 4529 4.595538 TTCGCGGCGTGTTCCAGT 62.596 61.111 22.90 0.00 0.00 4.00
2621 4534 1.374252 CGGCGTGTTCCAGTAAGCT 60.374 57.895 0.00 0.00 0.00 3.74
2626 4539 2.271800 CGTGTTCCAGTAAGCTGATCC 58.728 52.381 0.00 0.00 45.28 3.36
2633 4546 1.683917 CAGTAAGCTGATCCTAGCCGT 59.316 52.381 1.57 0.00 45.28 5.68
2634 4547 2.101582 CAGTAAGCTGATCCTAGCCGTT 59.898 50.000 1.57 0.00 45.28 4.44
2635 4548 2.766828 AGTAAGCTGATCCTAGCCGTTT 59.233 45.455 1.57 0.00 44.76 3.60
2636 4549 2.029838 AAGCTGATCCTAGCCGTTTG 57.970 50.000 1.57 0.00 44.76 2.93
2637 4550 0.462759 AGCTGATCCTAGCCGTTTGC 60.463 55.000 1.57 0.00 44.76 3.68
2675 4588 3.551259 CAAGCCGTTGGTAGGACAT 57.449 52.632 0.00 0.00 0.00 3.06
2678 4591 0.968901 AGCCGTTGGTAGGACATCGA 60.969 55.000 0.00 0.00 36.05 3.59
2679 4592 0.108520 GCCGTTGGTAGGACATCGAA 60.109 55.000 0.00 0.00 36.05 3.71
2681 4594 2.268298 CCGTTGGTAGGACATCGAAAG 58.732 52.381 0.00 0.00 36.05 2.62
2691 4604 2.887568 ATCGAAAGCGGCGCTCTG 60.888 61.111 36.44 25.89 38.25 3.35
2749 4670 1.482954 GAGCCTTAACTACGGGAGGT 58.517 55.000 0.00 0.00 0.00 3.85
2750 4671 1.136500 GAGCCTTAACTACGGGAGGTG 59.864 57.143 0.00 0.00 0.00 4.00
2751 4672 1.188863 GCCTTAACTACGGGAGGTGA 58.811 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.593128 CGCTGAAACCTTGTCCCTTG 59.407 55.000 0.00 0.00 0.00 3.61
94 98 2.026945 GCTCTCTGCCCTGCCTCTAC 62.027 65.000 0.00 0.00 35.15 2.59
145 149 3.197790 CTGCATCGCGGAACAGGG 61.198 66.667 6.13 0.00 37.02 4.45
157 161 1.931007 GCTCCTCCCCTTTCCTGCAT 61.931 60.000 0.00 0.00 0.00 3.96
165 169 0.405973 GAAGGTTTGCTCCTCCCCTT 59.594 55.000 0.00 0.00 38.20 3.95
177 181 2.495084 GCGAACAGAAGAGGAAGGTTT 58.505 47.619 0.00 0.00 0.00 3.27
196 200 2.035321 TGGATCAAAAACCTCCAAACGC 59.965 45.455 0.00 0.00 36.15 4.84
285 295 3.635373 CCCTGTCTCCATGAATGAAATGG 59.365 47.826 0.00 0.00 45.13 3.16
317 332 0.326264 AGAATATCATGGCGAGGGGC 59.674 55.000 0.00 0.00 42.51 5.80
348 363 2.282040 AGCAGCTCACACTTGCCC 60.282 61.111 0.00 0.00 38.58 5.36
349 364 1.575576 CTCAGCAGCTCACACTTGCC 61.576 60.000 0.00 0.00 38.58 4.52
350 365 1.867615 CTCAGCAGCTCACACTTGC 59.132 57.895 0.00 0.00 38.09 4.01
357 372 2.891928 AAGCAGGCTCAGCAGCTCA 61.892 57.895 15.36 0.00 46.03 4.26
359 374 2.360100 CAAGCAGGCTCAGCAGCT 60.360 61.111 9.86 9.86 46.03 4.24
360 375 4.117661 GCAAGCAGGCTCAGCAGC 62.118 66.667 0.00 1.23 46.06 5.25
361 376 1.972223 AAGCAAGCAGGCTCAGCAG 60.972 57.895 17.24 0.00 45.07 4.24
362 377 2.114625 AAGCAAGCAGGCTCAGCA 59.885 55.556 17.24 0.00 45.07 4.41
363 378 2.567049 CAAGCAAGCAGGCTCAGC 59.433 61.111 9.76 9.76 45.07 4.26
383 704 1.014564 CACGAAAGGAACCCGAGCTC 61.015 60.000 2.73 2.73 0.00 4.09
384 705 1.004918 CACGAAAGGAACCCGAGCT 60.005 57.895 0.00 0.00 0.00 4.09
470 795 2.485038 TCGTTTTCCGAATTAGTTGGGC 59.515 45.455 0.00 0.00 44.03 5.36
482 807 3.122948 CACTTAGGTCACATCGTTTTCCG 59.877 47.826 0.00 0.00 38.13 4.30
503 828 8.347004 TCACACTGATTGATTTTAATTAGCCA 57.653 30.769 0.00 0.00 29.49 4.75
513 838 8.248945 GGAAGATTTCATCACACTGATTGATTT 58.751 33.333 0.00 0.00 34.28 2.17
514 839 7.395206 TGGAAGATTTCATCACACTGATTGATT 59.605 33.333 0.00 0.00 34.28 2.57
527 858 6.536582 TCTGAATCTCGTTGGAAGATTTCATC 59.463 38.462 0.36 0.00 33.05 2.92
553 884 2.691011 TCGCCTTGCTGTAAACCTTTTT 59.309 40.909 0.00 0.00 0.00 1.94
558 889 1.464997 CTTCTCGCCTTGCTGTAAACC 59.535 52.381 0.00 0.00 0.00 3.27
572 903 6.496571 ACAATCGATCCTAGTTTACTTCTCG 58.503 40.000 0.00 0.00 0.00 4.04
591 922 5.163513 CCAAGCATCAACCTACAAACAATC 58.836 41.667 0.00 0.00 0.00 2.67
679 1018 4.400567 ACCTACCTACCTACGTCAATGAAC 59.599 45.833 0.00 0.00 0.00 3.18
686 1025 2.293170 GGTCACCTACCTACCTACGTC 58.707 57.143 0.00 0.00 45.75 4.34
690 1029 4.086316 GGTCGGGTCACCTACCTACCTA 62.086 59.091 10.74 0.00 46.46 3.08
691 1030 3.427705 GGTCGGGTCACCTACCTACCT 62.428 61.905 10.74 0.00 46.46 3.08
692 1031 1.039785 GGTCGGGTCACCTACCTACC 61.040 65.000 10.74 0.82 46.46 3.18
875 1214 5.454187 CGTGGATATAAATAGGTGGTGTGGT 60.454 44.000 0.00 0.00 0.00 4.16
879 1218 5.699458 GGAACGTGGATATAAATAGGTGGTG 59.301 44.000 0.00 0.00 0.00 4.17
880 1219 5.605488 AGGAACGTGGATATAAATAGGTGGT 59.395 40.000 0.00 0.00 0.00 4.16
910 1249 2.428890 GCTGCTGCTACCTAGAAGAAGA 59.571 50.000 8.53 0.00 36.83 2.87
960 1299 5.067283 GCAAGGGAAAGTAAGTTCTTGTCAA 59.933 40.000 0.00 0.00 35.43 3.18
961 1300 4.578928 GCAAGGGAAAGTAAGTTCTTGTCA 59.421 41.667 0.00 0.00 35.43 3.58
962 1301 4.023107 GGCAAGGGAAAGTAAGTTCTTGTC 60.023 45.833 0.00 0.00 35.43 3.18
963 1302 3.889538 GGCAAGGGAAAGTAAGTTCTTGT 59.110 43.478 0.00 0.00 35.43 3.16
964 1303 3.058224 CGGCAAGGGAAAGTAAGTTCTTG 60.058 47.826 0.00 0.00 35.90 3.02
965 1304 3.146847 CGGCAAGGGAAAGTAAGTTCTT 58.853 45.455 0.00 0.00 0.00 2.52
966 1305 2.370849 TCGGCAAGGGAAAGTAAGTTCT 59.629 45.455 0.00 0.00 0.00 3.01
967 1306 2.774687 TCGGCAAGGGAAAGTAAGTTC 58.225 47.619 0.00 0.00 0.00 3.01
973 1312 0.035056 CTGGATCGGCAAGGGAAAGT 60.035 55.000 0.00 0.00 0.00 2.66
977 1316 1.686325 GCTACTGGATCGGCAAGGGA 61.686 60.000 0.00 0.00 0.00 4.20
985 1324 1.198867 CTCCATCTCGCTACTGGATCG 59.801 57.143 0.00 0.00 38.36 3.69
996 1335 0.539438 CCTCCTCCTCCTCCATCTCG 60.539 65.000 0.00 0.00 0.00 4.04
997 1336 0.831711 GCCTCCTCCTCCTCCATCTC 60.832 65.000 0.00 0.00 0.00 2.75
998 1337 1.235696 GCCTCCTCCTCCTCCATCT 59.764 63.158 0.00 0.00 0.00 2.90
1080 1425 2.573869 CCTGGACATGTCGTCGCT 59.426 61.111 19.33 0.00 46.42 4.93
1081 1426 3.188786 GCCTGGACATGTCGTCGC 61.189 66.667 19.33 15.31 46.42 5.19
1083 1428 1.741770 GGTGCCTGGACATGTCGTC 60.742 63.158 19.33 7.42 44.57 4.20
1084 1429 2.347490 GGTGCCTGGACATGTCGT 59.653 61.111 19.33 0.00 0.00 4.34
1087 1432 1.130054 AGAGTGGTGCCTGGACATGT 61.130 55.000 0.00 0.00 0.00 3.21
1089 1434 1.681666 CAGAGTGGTGCCTGGACAT 59.318 57.895 0.00 0.00 0.00 3.06
1095 1440 1.374190 CTCAAGCAGAGTGGTGCCT 59.626 57.895 0.00 0.00 45.20 4.75
1097 1442 2.331132 GGCTCAAGCAGAGTGGTGC 61.331 63.158 4.13 0.00 46.47 5.01
1098 1443 0.535780 TTGGCTCAAGCAGAGTGGTG 60.536 55.000 4.13 0.00 46.47 4.17
1101 1446 1.584380 GCCTTGGCTCAAGCAGAGTG 61.584 60.000 4.11 0.00 46.47 3.51
1104 1449 2.359107 CGCCTTGGCTCAAGCAGA 60.359 61.111 10.12 0.00 44.36 4.26
1106 1451 4.269523 ACCGCCTTGGCTCAAGCA 62.270 61.111 10.12 0.00 43.94 3.91
1109 1454 4.697756 CCGACCGCCTTGGCTCAA 62.698 66.667 10.12 0.00 43.94 3.02
1269 1614 1.511768 GCGTGAGTGGGGAGTAGTC 59.488 63.158 0.00 0.00 0.00 2.59
1272 1617 3.755628 GCGCGTGAGTGGGGAGTA 61.756 66.667 8.43 0.00 43.14 2.59
1391 1739 3.319198 TGAACCTCCCTGACGCCC 61.319 66.667 0.00 0.00 0.00 6.13
1535 1892 4.081030 CGCTGTTGCCGCTGTGAG 62.081 66.667 0.00 0.00 35.36 3.51
1557 1914 2.090524 GTAAACCGACCTCGCACCG 61.091 63.158 0.00 0.00 38.18 4.94
1566 1923 4.318831 CCGTATCCGTAGTAGTAAACCGAC 60.319 50.000 0.00 0.00 0.00 4.79
1780 2137 5.860182 CGCTTAACTTGTAGTACAACTGCTA 59.140 40.000 11.75 0.00 33.96 3.49
1783 2140 4.446385 TGCGCTTAACTTGTAGTACAACTG 59.554 41.667 11.75 6.22 33.96 3.16
1784 2141 4.446719 GTGCGCTTAACTTGTAGTACAACT 59.553 41.667 11.75 5.07 33.96 3.16
1785 2142 4.446719 AGTGCGCTTAACTTGTAGTACAAC 59.553 41.667 11.75 0.76 33.96 3.32
1786 2143 4.624015 AGTGCGCTTAACTTGTAGTACAA 58.376 39.130 14.85 14.85 36.54 2.41
1788 2145 3.300066 CGAGTGCGCTTAACTTGTAGTAC 59.700 47.826 9.73 0.00 0.00 2.73
1832 2195 2.050985 GCAACAGTGGCGACAAGC 60.051 61.111 0.00 0.00 46.06 4.01
1843 2206 9.640963 ATCTTAGTACTTACTTACAAGCAACAG 57.359 33.333 0.00 0.00 37.73 3.16
1844 2207 9.419297 CATCTTAGTACTTACTTACAAGCAACA 57.581 33.333 0.00 0.00 37.73 3.33
1861 2224 9.784531 GGATTGATTCATCTTTCCATCTTAGTA 57.215 33.333 0.00 0.00 32.41 1.82
1862 2225 8.277197 TGGATTGATTCATCTTTCCATCTTAGT 58.723 33.333 7.02 0.00 35.28 2.24
1863 2226 8.687292 TGGATTGATTCATCTTTCCATCTTAG 57.313 34.615 7.02 0.00 35.28 2.18
1944 2363 0.458260 AACGACACAACCAAAAGGGC 59.542 50.000 0.00 0.00 42.05 5.19
1976 2395 1.075482 CCCCACAAGACCACATGCT 59.925 57.895 0.00 0.00 0.00 3.79
1986 2446 3.149981 GTCTTTCTTTCCTCCCCACAAG 58.850 50.000 0.00 0.00 0.00 3.16
2013 2473 1.067821 GTCTCTCATGGTGGATCGGAC 59.932 57.143 0.00 0.00 0.00 4.79
2018 2478 1.115467 GTCGGTCTCTCATGGTGGAT 58.885 55.000 0.00 0.00 0.00 3.41
2019 2479 1.313091 CGTCGGTCTCTCATGGTGGA 61.313 60.000 0.00 0.00 0.00 4.02
2020 2480 1.139734 CGTCGGTCTCTCATGGTGG 59.860 63.158 0.00 0.00 0.00 4.61
2021 2481 1.139734 CCGTCGGTCTCTCATGGTG 59.860 63.158 2.08 0.00 0.00 4.17
2022 2482 1.001269 TCCGTCGGTCTCTCATGGT 60.001 57.895 11.88 0.00 0.00 3.55
2023 2483 1.032657 ACTCCGTCGGTCTCTCATGG 61.033 60.000 11.88 0.00 0.00 3.66
2037 3940 2.827190 ATGCTGCCATGCACTCCG 60.827 61.111 0.00 0.00 46.33 4.63
2049 3952 2.124983 CACCGAGTCCCCATGCTG 60.125 66.667 0.00 0.00 0.00 4.41
2050 3953 2.607750 ACACCGAGTCCCCATGCT 60.608 61.111 0.00 0.00 0.00 3.79
2051 3954 2.125106 GACACCGAGTCCCCATGC 60.125 66.667 0.00 0.00 41.56 4.06
2112 4015 1.204231 GAGAGACAGAGACATGCTGCA 59.796 52.381 4.13 4.13 36.86 4.41
2149 4060 6.741992 TGATACCACTTGCAAGTCAATAAG 57.258 37.500 28.97 16.23 37.08 1.73
2156 4067 8.046708 TGATAAACTATGATACCACTTGCAAGT 58.953 33.333 26.36 26.36 40.60 3.16
2157 4068 8.437360 TGATAAACTATGATACCACTTGCAAG 57.563 34.615 24.84 24.84 0.00 4.01
2175 4088 8.292448 ACACTTCTTGATTGACACATGATAAAC 58.708 33.333 0.00 0.00 0.00 2.01
2196 4109 0.904649 TCTCGGGCATGATGACACTT 59.095 50.000 0.00 0.00 0.00 3.16
2198 4111 1.156645 GCTCTCGGGCATGATGACAC 61.157 60.000 0.00 0.00 0.00 3.67
2199 4112 1.144716 GCTCTCGGGCATGATGACA 59.855 57.895 0.00 0.00 0.00 3.58
2200 4113 1.953138 CGCTCTCGGGCATGATGAC 60.953 63.158 0.00 0.00 0.00 3.06
2201 4114 2.418777 CGCTCTCGGGCATGATGA 59.581 61.111 0.00 0.00 0.00 2.92
2211 4124 2.065993 TTTCTGAAGTTCCGCTCTCG 57.934 50.000 0.00 0.00 0.00 4.04
2212 4125 3.131396 TGTTTTCTGAAGTTCCGCTCTC 58.869 45.455 0.00 0.00 0.00 3.20
2213 4126 3.194005 TGTTTTCTGAAGTTCCGCTCT 57.806 42.857 0.00 0.00 0.00 4.09
2215 4128 3.541632 TCTTGTTTTCTGAAGTTCCGCT 58.458 40.909 0.00 0.00 0.00 5.52
2216 4129 3.560068 TCTCTTGTTTTCTGAAGTTCCGC 59.440 43.478 0.00 0.00 0.00 5.54
2218 4131 7.971183 ATACTCTCTTGTTTTCTGAAGTTCC 57.029 36.000 0.00 0.00 0.00 3.62
2252 4165 3.343617 TGCAGAATAAAAAGGACCGGAG 58.656 45.455 9.46 0.00 0.00 4.63
2253 4166 3.426787 TGCAGAATAAAAAGGACCGGA 57.573 42.857 9.46 0.00 0.00 5.14
2254 4167 6.391227 AATATGCAGAATAAAAAGGACCGG 57.609 37.500 0.00 0.00 0.00 5.28
2255 4168 9.796120 TTTTAATATGCAGAATAAAAAGGACCG 57.204 29.630 11.00 0.00 0.00 4.79
2268 4181 9.671279 TGACTTCAGAGAATTTTAATATGCAGA 57.329 29.630 0.00 0.00 0.00 4.26
2299 4212 9.438228 TCATATAAATACGGTCAAACTTTGTGA 57.562 29.630 1.44 0.00 0.00 3.58
2365 4278 9.950680 CACTAAATGTGTCATGACTTAAAGTTT 57.049 29.630 25.55 17.76 41.53 2.66
2366 4279 9.337396 TCACTAAATGTGTCATGACTTAAAGTT 57.663 29.630 25.55 15.24 46.27 2.66
2367 4280 8.902540 TCACTAAATGTGTCATGACTTAAAGT 57.097 30.769 25.55 17.09 46.27 2.66
2372 4285 9.671279 TCAATATCACTAAATGTGTCATGACTT 57.329 29.630 25.55 14.24 46.27 3.01
2373 4286 9.842775 ATCAATATCACTAAATGTGTCATGACT 57.157 29.630 25.55 8.50 46.27 3.41
2401 4314 4.669206 AGTGCCAACATTCACAATTTGA 57.331 36.364 2.79 0.00 35.76 2.69
2402 4315 5.738118 AAAGTGCCAACATTCACAATTTG 57.262 34.783 0.00 0.00 35.76 2.32
2403 4316 6.756299 AAAAAGTGCCAACATTCACAATTT 57.244 29.167 0.00 0.00 35.76 1.82
2435 4348 4.870221 AGTCACGTAAAGTTTGACCAAC 57.130 40.909 0.00 0.00 40.52 3.77
2436 4349 4.936411 TCAAGTCACGTAAAGTTTGACCAA 59.064 37.500 0.00 0.00 40.52 3.67
2437 4350 4.330620 GTCAAGTCACGTAAAGTTTGACCA 59.669 41.667 14.50 0.00 40.52 4.02
2438 4351 4.569564 AGTCAAGTCACGTAAAGTTTGACC 59.430 41.667 18.61 8.26 43.15 4.02
2439 4352 5.713822 AGTCAAGTCACGTAAAGTTTGAC 57.286 39.130 16.33 16.33 42.72 3.18
2440 4353 5.870433 TGAAGTCAAGTCACGTAAAGTTTGA 59.130 36.000 0.00 0.00 0.00 2.69
2441 4354 6.102006 TGAAGTCAAGTCACGTAAAGTTTG 57.898 37.500 0.00 0.00 0.00 2.93
2442 4355 6.730960 TTGAAGTCAAGTCACGTAAAGTTT 57.269 33.333 0.00 0.00 0.00 2.66
2443 4356 6.537301 TGATTGAAGTCAAGTCACGTAAAGTT 59.463 34.615 0.00 0.00 39.47 2.66
2444 4357 6.046593 TGATTGAAGTCAAGTCACGTAAAGT 58.953 36.000 0.00 0.00 39.47 2.66
2445 4358 6.525121 TGATTGAAGTCAAGTCACGTAAAG 57.475 37.500 0.00 0.00 39.47 1.85
2446 4359 6.912203 TTGATTGAAGTCAAGTCACGTAAA 57.088 33.333 0.00 0.00 39.47 2.01
2447 4360 6.912203 TTTGATTGAAGTCAAGTCACGTAA 57.088 33.333 0.00 0.00 39.13 3.18
2448 4361 6.929049 AGATTTGATTGAAGTCAAGTCACGTA 59.071 34.615 11.70 0.00 43.35 3.57
2449 4362 5.760253 AGATTTGATTGAAGTCAAGTCACGT 59.240 36.000 11.70 0.00 43.35 4.49
2450 4363 6.233430 AGATTTGATTGAAGTCAAGTCACG 57.767 37.500 11.70 0.00 43.35 4.35
2455 4368 9.378597 CGCATATAAGATTTGATTGAAGTCAAG 57.621 33.333 0.00 0.00 39.13 3.02
2456 4369 9.108284 TCGCATATAAGATTTGATTGAAGTCAA 57.892 29.630 0.00 0.00 40.51 3.18
2457 4370 8.661352 TCGCATATAAGATTTGATTGAAGTCA 57.339 30.769 0.00 0.00 0.00 3.41
2458 4371 9.935682 TTTCGCATATAAGATTTGATTGAAGTC 57.064 29.630 0.00 0.00 0.00 3.01
2470 4383 8.504005 CGGTCCTTTTTATTTCGCATATAAGAT 58.496 33.333 0.00 0.00 0.00 2.40
2471 4384 7.711772 TCGGTCCTTTTTATTTCGCATATAAGA 59.288 33.333 0.00 0.00 0.00 2.10
2472 4385 7.857569 TCGGTCCTTTTTATTTCGCATATAAG 58.142 34.615 0.00 0.00 0.00 1.73
2473 4386 7.789273 TCGGTCCTTTTTATTTCGCATATAA 57.211 32.000 0.00 0.00 0.00 0.98
2474 4387 7.041644 CCTTCGGTCCTTTTTATTTCGCATATA 60.042 37.037 0.00 0.00 0.00 0.86
2475 4388 6.238648 CCTTCGGTCCTTTTTATTTCGCATAT 60.239 38.462 0.00 0.00 0.00 1.78
2476 4389 5.065474 CCTTCGGTCCTTTTTATTTCGCATA 59.935 40.000 0.00 0.00 0.00 3.14
2477 4390 4.142469 CCTTCGGTCCTTTTTATTTCGCAT 60.142 41.667 0.00 0.00 0.00 4.73
2478 4391 3.189702 CCTTCGGTCCTTTTTATTTCGCA 59.810 43.478 0.00 0.00 0.00 5.10
2479 4392 3.427098 CCCTTCGGTCCTTTTTATTTCGC 60.427 47.826 0.00 0.00 0.00 4.70
2480 4393 4.004982 TCCCTTCGGTCCTTTTTATTTCG 58.995 43.478 0.00 0.00 0.00 3.46
2481 4394 5.008331 ACTCCCTTCGGTCCTTTTTATTTC 58.992 41.667 0.00 0.00 0.00 2.17
2482 4395 4.994282 ACTCCCTTCGGTCCTTTTTATTT 58.006 39.130 0.00 0.00 0.00 1.40
2483 4396 4.652679 ACTCCCTTCGGTCCTTTTTATT 57.347 40.909 0.00 0.00 0.00 1.40
2484 4397 4.533311 TGTACTCCCTTCGGTCCTTTTTAT 59.467 41.667 0.00 0.00 0.00 1.40
2485 4398 3.903090 TGTACTCCCTTCGGTCCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
2486 4399 2.707257 TGTACTCCCTTCGGTCCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
2487 4400 2.332117 TGTACTCCCTTCGGTCCTTTT 58.668 47.619 0.00 0.00 0.00 2.27
2488 4401 2.019807 TGTACTCCCTTCGGTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11
2489 4402 2.249309 ATGTACTCCCTTCGGTCCTT 57.751 50.000 0.00 0.00 0.00 3.36
2490 4403 3.393426 TTATGTACTCCCTTCGGTCCT 57.607 47.619 0.00 0.00 0.00 3.85
2491 4404 3.305199 CGATTATGTACTCCCTTCGGTCC 60.305 52.174 0.00 0.00 0.00 4.46
2492 4405 3.317430 ACGATTATGTACTCCCTTCGGTC 59.683 47.826 0.00 0.00 0.00 4.79
2493 4406 3.067742 CACGATTATGTACTCCCTTCGGT 59.932 47.826 0.00 0.00 0.00 4.69
2494 4407 3.067742 ACACGATTATGTACTCCCTTCGG 59.932 47.826 0.00 0.00 0.00 4.30
2495 4408 4.042398 CACACGATTATGTACTCCCTTCG 58.958 47.826 0.00 0.00 0.00 3.79
2496 4409 3.802685 GCACACGATTATGTACTCCCTTC 59.197 47.826 0.00 0.00 0.00 3.46
2497 4410 3.451178 AGCACACGATTATGTACTCCCTT 59.549 43.478 0.00 0.00 0.00 3.95
2498 4411 3.031736 AGCACACGATTATGTACTCCCT 58.968 45.455 0.00 0.00 0.00 4.20
2499 4412 3.454371 AGCACACGATTATGTACTCCC 57.546 47.619 0.00 0.00 0.00 4.30
2500 4413 4.181578 ACAAGCACACGATTATGTACTCC 58.818 43.478 0.00 0.00 0.00 3.85
2501 4414 5.779806 AACAAGCACACGATTATGTACTC 57.220 39.130 0.00 0.00 0.00 2.59
2502 4415 5.106712 CCAAACAAGCACACGATTATGTACT 60.107 40.000 0.00 0.00 0.00 2.73
2503 4416 5.086058 CCAAACAAGCACACGATTATGTAC 58.914 41.667 0.00 0.00 0.00 2.90
2504 4417 4.757657 ACCAAACAAGCACACGATTATGTA 59.242 37.500 0.00 0.00 0.00 2.29
2505 4418 3.568007 ACCAAACAAGCACACGATTATGT 59.432 39.130 0.00 0.00 0.00 2.29
2506 4419 3.913763 CACCAAACAAGCACACGATTATG 59.086 43.478 0.00 0.00 0.00 1.90
2507 4420 3.611530 GCACCAAACAAGCACACGATTAT 60.612 43.478 0.00 0.00 0.00 1.28
2508 4421 2.287308 GCACCAAACAAGCACACGATTA 60.287 45.455 0.00 0.00 0.00 1.75
2509 4422 1.535860 GCACCAAACAAGCACACGATT 60.536 47.619 0.00 0.00 0.00 3.34
2510 4423 0.030638 GCACCAAACAAGCACACGAT 59.969 50.000 0.00 0.00 0.00 3.73
2511 4424 1.431440 GCACCAAACAAGCACACGA 59.569 52.632 0.00 0.00 0.00 4.35
2512 4425 1.938814 CGCACCAAACAAGCACACG 60.939 57.895 0.00 0.00 0.00 4.49
2513 4426 2.230264 GCGCACCAAACAAGCACAC 61.230 57.895 0.30 0.00 0.00 3.82
2514 4427 2.103934 GCGCACCAAACAAGCACA 59.896 55.556 0.30 0.00 0.00 4.57
2515 4428 1.481819 CTTGCGCACCAAACAAGCAC 61.482 55.000 11.12 0.00 37.57 4.40
2516 4429 1.226916 CTTGCGCACCAAACAAGCA 60.227 52.632 11.12 0.00 34.90 3.91
2517 4430 1.065600 TCTTGCGCACCAAACAAGC 59.934 52.632 11.12 0.00 40.45 4.01
2518 4431 0.929824 CGTCTTGCGCACCAAACAAG 60.930 55.000 11.12 2.35 41.70 3.16
2519 4432 1.063327 CGTCTTGCGCACCAAACAA 59.937 52.632 11.12 0.00 31.94 2.83
2520 4433 2.042520 GACGTCTTGCGCACCAAACA 62.043 55.000 11.12 0.00 46.11 2.83
2521 4434 1.368850 GACGTCTTGCGCACCAAAC 60.369 57.895 11.12 4.98 46.11 2.93
2522 4435 1.771073 CTGACGTCTTGCGCACCAAA 61.771 55.000 11.12 0.00 46.11 3.28
2523 4436 2.202946 TGACGTCTTGCGCACCAA 60.203 55.556 11.12 0.00 46.11 3.67
2524 4437 2.661537 CTGACGTCTTGCGCACCA 60.662 61.111 11.12 0.00 46.11 4.17
2525 4438 2.658707 GACTGACGTCTTGCGCACC 61.659 63.158 11.12 0.00 46.11 5.01
2526 4439 2.658707 GGACTGACGTCTTGCGCAC 61.659 63.158 11.12 0.00 46.11 5.34
2527 4440 2.355837 GGACTGACGTCTTGCGCA 60.356 61.111 17.92 5.66 46.11 6.09
2528 4441 3.112709 GGGACTGACGTCTTGCGC 61.113 66.667 17.92 0.00 46.11 6.09
2530 4443 2.432628 CCGGGACTGACGTCTTGC 60.433 66.667 17.92 8.83 40.10 4.01
2531 4444 2.432628 GCCGGGACTGACGTCTTG 60.433 66.667 17.92 11.96 40.10 3.02
2532 4445 3.692406 GGCCGGGACTGACGTCTT 61.692 66.667 17.92 3.25 40.10 3.01
2545 4458 3.045492 AAAGTGTAACGCGGGCCG 61.045 61.111 24.35 24.35 45.86 6.13
2546 4459 2.559330 CAAAGTGTAACGCGGGCC 59.441 61.111 12.47 0.00 45.86 5.80
2547 4460 2.127003 GCAAAGTGTAACGCGGGC 60.127 61.111 12.47 0.00 45.86 6.13
2548 4461 0.385473 CTTGCAAAGTGTAACGCGGG 60.385 55.000 12.47 0.00 45.86 6.13
2549 4462 3.071495 CTTGCAAAGTGTAACGCGG 57.929 52.632 12.47 0.00 45.86 6.46
2576 4489 1.053424 TGCAAGTACGAGGAAACCCT 58.947 50.000 0.00 0.00 36.57 4.34
2577 4490 2.109425 ATGCAAGTACGAGGAAACCC 57.891 50.000 0.00 0.00 0.00 4.11
2578 4491 3.335579 AGAATGCAAGTACGAGGAAACC 58.664 45.455 0.00 0.00 0.00 3.27
2579 4492 4.434330 CGAAGAATGCAAGTACGAGGAAAC 60.434 45.833 0.00 0.00 0.00 2.78
2580 4493 3.678072 CGAAGAATGCAAGTACGAGGAAA 59.322 43.478 0.00 0.00 0.00 3.13
2581 4494 3.250744 CGAAGAATGCAAGTACGAGGAA 58.749 45.455 0.00 0.00 0.00 3.36
2582 4495 2.876091 CGAAGAATGCAAGTACGAGGA 58.124 47.619 0.00 0.00 0.00 3.71
2583 4496 1.324736 GCGAAGAATGCAAGTACGAGG 59.675 52.381 0.00 0.00 0.00 4.63
2584 4497 1.007011 CGCGAAGAATGCAAGTACGAG 60.007 52.381 0.00 0.00 0.00 4.18
2585 4498 0.989164 CGCGAAGAATGCAAGTACGA 59.011 50.000 0.00 0.00 0.00 3.43
2586 4499 0.025001 CCGCGAAGAATGCAAGTACG 59.975 55.000 8.23 0.00 0.00 3.67
2587 4500 0.247695 GCCGCGAAGAATGCAAGTAC 60.248 55.000 8.23 0.00 0.00 2.73
2588 4501 1.692148 CGCCGCGAAGAATGCAAGTA 61.692 55.000 8.23 0.00 0.00 2.24
2589 4502 2.870372 GCCGCGAAGAATGCAAGT 59.130 55.556 8.23 0.00 0.00 3.16
2590 4503 2.276868 CGCCGCGAAGAATGCAAG 60.277 61.111 8.23 0.00 0.00 4.01
2591 4504 3.047280 ACGCCGCGAAGAATGCAA 61.047 55.556 21.79 0.00 0.00 4.08
2592 4505 3.787676 CACGCCGCGAAGAATGCA 61.788 61.111 21.79 0.00 0.00 3.96
2593 4506 3.308878 AACACGCCGCGAAGAATGC 62.309 57.895 21.79 0.00 0.00 3.56
2594 4507 1.225745 GAACACGCCGCGAAGAATG 60.226 57.895 21.79 9.36 0.00 2.67
2595 4508 2.388232 GGAACACGCCGCGAAGAAT 61.388 57.895 21.79 6.30 0.00 2.40
2596 4509 3.039588 GGAACACGCCGCGAAGAA 61.040 61.111 21.79 0.00 0.00 2.52
2597 4510 4.287781 TGGAACACGCCGCGAAGA 62.288 61.111 21.79 0.00 0.00 2.87
2598 4511 3.777925 CTGGAACACGCCGCGAAG 61.778 66.667 21.79 13.80 0.00 3.79
2599 4512 2.696409 TTACTGGAACACGCCGCGAA 62.696 55.000 21.79 0.00 0.00 4.70
2600 4513 3.210223 TTACTGGAACACGCCGCGA 62.210 57.895 21.79 0.00 0.00 5.87
2601 4514 2.726691 CTTACTGGAACACGCCGCG 61.727 63.158 12.14 12.14 0.00 6.46
2602 4515 3.023591 GCTTACTGGAACACGCCGC 62.024 63.158 0.00 0.00 0.00 6.53
2603 4516 1.374252 AGCTTACTGGAACACGCCG 60.374 57.895 0.00 0.00 0.00 6.46
2604 4517 0.320421 TCAGCTTACTGGAACACGCC 60.320 55.000 0.00 0.00 44.59 5.68
2605 4518 1.661112 GATCAGCTTACTGGAACACGC 59.339 52.381 0.00 0.00 44.59 5.34
2606 4519 2.093973 AGGATCAGCTTACTGGAACACG 60.094 50.000 0.00 0.00 44.59 4.49
2607 4520 3.618690 AGGATCAGCTTACTGGAACAC 57.381 47.619 0.00 0.00 44.59 3.32
2608 4521 3.133003 GCTAGGATCAGCTTACTGGAACA 59.867 47.826 0.00 0.00 44.59 3.18
2609 4522 3.493524 GGCTAGGATCAGCTTACTGGAAC 60.494 52.174 5.15 0.00 44.59 3.62
2610 4523 2.700897 GGCTAGGATCAGCTTACTGGAA 59.299 50.000 5.15 0.00 44.59 3.53
2611 4524 2.320781 GGCTAGGATCAGCTTACTGGA 58.679 52.381 5.15 0.00 44.59 3.86
2612 4525 1.000283 CGGCTAGGATCAGCTTACTGG 60.000 57.143 5.15 0.00 44.59 4.00
2613 4526 1.683917 ACGGCTAGGATCAGCTTACTG 59.316 52.381 5.15 0.00 45.95 2.74
2614 4527 2.074729 ACGGCTAGGATCAGCTTACT 57.925 50.000 5.15 0.00 41.50 2.24
2615 4528 2.866762 CAAACGGCTAGGATCAGCTTAC 59.133 50.000 5.15 0.00 41.50 2.34
2616 4529 2.741878 GCAAACGGCTAGGATCAGCTTA 60.742 50.000 5.15 0.00 41.50 3.09
2621 4534 4.513519 CGCAAACGGCTAGGATCA 57.486 55.556 0.00 0.00 41.67 2.92
2645 4558 3.913089 CAACGGCTTGGATTAGCTTTTT 58.087 40.909 0.00 0.00 40.99 1.94
2646 4559 3.575965 CAACGGCTTGGATTAGCTTTT 57.424 42.857 0.00 0.00 40.99 2.27
2657 4570 1.369625 GATGTCCTACCAACGGCTTG 58.630 55.000 0.00 0.00 0.00 4.01
2658 4571 0.108329 CGATGTCCTACCAACGGCTT 60.108 55.000 0.00 0.00 0.00 4.35
2659 4572 0.968901 TCGATGTCCTACCAACGGCT 60.969 55.000 0.00 0.00 32.27 5.52
2660 4573 0.108520 TTCGATGTCCTACCAACGGC 60.109 55.000 0.00 0.00 32.27 5.68
2661 4574 2.268298 CTTTCGATGTCCTACCAACGG 58.732 52.381 0.00 0.00 32.27 4.44
2662 4575 1.659098 GCTTTCGATGTCCTACCAACG 59.341 52.381 0.00 0.00 32.61 4.10
2663 4576 1.659098 CGCTTTCGATGTCCTACCAAC 59.341 52.381 0.00 0.00 38.10 3.77
2670 4583 4.223964 GCGCCGCTTTCGATGTCC 62.224 66.667 0.00 0.00 38.10 4.02
2749 4670 3.458163 GCCGGTCGGTGATCCTCA 61.458 66.667 11.25 0.00 37.65 3.86
2750 4671 4.222847 GGCCGGTCGGTGATCCTC 62.223 72.222 11.25 0.00 37.65 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.