Multiple sequence alignment - TraesCS3A01G035000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G035000 chr3A 100.000 2792 0 0 1 2792 19484235 19481444 0.000000e+00 5156.0
1 TraesCS3A01G035000 chr3A 86.825 926 97 17 850 1752 26201460 26202383 0.000000e+00 1011.0
2 TraesCS3A01G035000 chr3A 85.954 776 93 10 1107 1878 26200254 26201017 0.000000e+00 815.0
3 TraesCS3A01G035000 chr3A 79.221 1001 142 38 687 1658 19359870 19360833 1.090000e-178 636.0
4 TraesCS3A01G035000 chr3A 80.303 132 20 3 1058 1183 19281930 19282061 8.230000e-16 95.3
5 TraesCS3A01G035000 chr3D 85.479 1942 164 47 1 1888 17363954 17365831 0.000000e+00 1916.0
6 TraesCS3A01G035000 chr3D 90.154 518 49 2 1235 1752 18741171 18741686 0.000000e+00 673.0
7 TraesCS3A01G035000 chr3D 77.797 1162 156 45 687 1802 17530615 17529510 8.490000e-175 623.0
8 TraesCS3A01G035000 chr3D 74.340 682 119 37 853 1514 17523992 17523347 3.590000e-59 239.0
9 TraesCS3A01G035000 chr3D 71.302 676 147 28 1090 1746 11343944 11344591 2.260000e-26 130.0
10 TraesCS3A01G035000 chr3D 76.190 252 36 16 1650 1887 17522958 17522717 8.170000e-21 111.0
11 TraesCS3A01G035000 chr3B 82.710 1070 130 30 813 1859 24935527 24936564 0.000000e+00 900.0
12 TraesCS3A01G035000 chr3B 83.724 811 63 30 1 785 24934780 24935547 0.000000e+00 702.0
13 TraesCS3A01G035000 chr3B 77.711 332 59 9 1025 1351 27514317 27514638 3.670000e-44 189.0
14 TraesCS3A01G035000 chr3B 74.292 424 81 24 1393 1796 24939051 24939466 1.340000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G035000 chr3A 19481444 19484235 2791 True 5156.000000 5156 100.0000 1 2792 1 chr3A.!!$R1 2791
1 TraesCS3A01G035000 chr3A 26200254 26202383 2129 False 913.000000 1011 86.3895 850 1878 2 chr3A.!!$F3 1028
2 TraesCS3A01G035000 chr3A 19359870 19360833 963 False 636.000000 636 79.2210 687 1658 1 chr3A.!!$F2 971
3 TraesCS3A01G035000 chr3D 17363954 17365831 1877 False 1916.000000 1916 85.4790 1 1888 1 chr3D.!!$F2 1887
4 TraesCS3A01G035000 chr3D 18741171 18741686 515 False 673.000000 673 90.1540 1235 1752 1 chr3D.!!$F3 517
5 TraesCS3A01G035000 chr3D 17529510 17530615 1105 True 623.000000 623 77.7970 687 1802 1 chr3D.!!$R1 1115
6 TraesCS3A01G035000 chr3B 24934780 24939466 4686 False 585.333333 900 80.2420 1 1859 3 chr3B.!!$F2 1858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 1398 0.178958 CCTATCTCCCGTAGCCCAGT 60.179 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2474 0.03601 AGGATGAGTGAACAAGCCCG 60.036 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 62 4.717280 ACCACCTAAAAACATGGGAAACAA 59.283 37.500 0.00 0.00 36.47 2.83
60 63 5.163353 ACCACCTAAAAACATGGGAAACAAG 60.163 40.000 0.00 0.00 36.47 3.16
87 90 7.526142 AAACAGAAAACTAGAGGAAATTCCC 57.474 36.000 8.66 0.31 37.19 3.97
157 160 3.643199 TGTGCTAGACCCAATTATGCA 57.357 42.857 0.00 0.00 0.00 3.96
195 198 1.267832 CCGACATTTTAATGGGCGTCG 60.268 52.381 7.33 0.00 40.70 5.12
221 224 1.470098 GGTTTGTCAGCATAGCCTGTG 59.530 52.381 0.00 0.00 34.47 3.66
242 266 3.053544 TGAACCTTGTTTTGGGTCACCTA 60.054 43.478 0.00 0.00 45.38 3.08
260 284 5.044772 TCACCTAGGCAAATACATAAACCCA 60.045 40.000 9.30 0.00 0.00 4.51
380 405 6.385649 TGGCGGTTTCTATAATGAAAATCC 57.614 37.500 0.00 0.00 37.63 3.01
392 417 5.848833 AATGAAAATCCATGAGAAGGCTC 57.151 39.130 0.00 0.00 41.67 4.70
394 419 3.274288 GAAAATCCATGAGAAGGCTCGT 58.726 45.455 0.00 0.00 44.33 4.18
405 432 4.518970 TGAGAAGGCTCGTTGCTTAAAAAT 59.481 37.500 0.00 0.00 44.33 1.82
406 433 5.703592 TGAGAAGGCTCGTTGCTTAAAAATA 59.296 36.000 0.00 0.00 44.33 1.40
407 434 6.374333 TGAGAAGGCTCGTTGCTTAAAAATAT 59.626 34.615 0.00 0.00 44.33 1.28
451 478 7.610580 AAGAATCAGTTTGGAAATGGGTTTA 57.389 32.000 0.00 0.00 0.00 2.01
471 498 6.462347 GGTTTAATGCTTTCAAGTCCTTGGAA 60.462 38.462 7.16 4.06 40.78 3.53
511 538 0.660488 TGCCAAGTTGCACGTTACAG 59.340 50.000 0.00 0.00 36.04 2.74
513 540 1.069906 GCCAAGTTGCACGTTACAGAG 60.070 52.381 0.00 0.00 0.00 3.35
543 570 4.843147 TGACGCAAAGTAAAATGTGTGAG 58.157 39.130 0.00 0.00 40.15 3.51
559 586 2.288825 TGTGAGCTCTAGGTTTGAACGG 60.289 50.000 16.19 0.00 0.00 4.44
560 587 2.029290 GTGAGCTCTAGGTTTGAACGGA 60.029 50.000 16.19 0.00 0.00 4.69
577 604 3.628280 GACGACGTCTCCCCTGCAC 62.628 68.421 20.52 0.00 0.00 4.57
756 788 3.375299 GCATCCTGGTTCAAGTCACATAC 59.625 47.826 0.00 0.00 0.00 2.39
762 794 2.344025 GTTCAAGTCACATACGGGGTC 58.656 52.381 0.00 0.00 0.00 4.46
763 795 1.933021 TCAAGTCACATACGGGGTCT 58.067 50.000 0.00 0.00 0.00 3.85
786 818 2.092968 TCTGGTCATGGTCATGGCTTAC 60.093 50.000 14.15 4.25 42.72 2.34
789 821 0.180171 TCATGGTCATGGCTTACGGG 59.820 55.000 10.61 0.00 39.24 5.28
802 834 1.851065 TTACGGGCCAAGGGGGTAAC 61.851 60.000 4.39 0.00 39.65 2.50
804 836 2.681591 GGGCCAAGGGGGTAACTC 59.318 66.667 4.39 0.00 39.65 3.01
805 837 1.929088 GGGCCAAGGGGGTAACTCT 60.929 63.158 4.39 0.00 39.65 3.24
806 838 1.608154 GGCCAAGGGGGTAACTCTC 59.392 63.158 0.00 0.00 39.65 3.20
807 839 1.205460 GGCCAAGGGGGTAACTCTCA 61.205 60.000 0.00 0.00 39.65 3.27
809 841 1.340114 GCCAAGGGGGTAACTCTCAAG 60.340 57.143 0.00 0.00 39.65 3.02
811 843 0.992695 AAGGGGGTAACTCTCAAGGC 59.007 55.000 0.00 0.00 37.10 4.35
812 844 0.914902 AGGGGGTAACTCTCAAGGCC 60.915 60.000 0.00 0.00 37.10 5.19
813 845 0.914902 GGGGGTAACTCTCAAGGCCT 60.915 60.000 0.00 0.00 37.10 5.19
815 847 1.276622 GGGTAACTCTCAAGGCCTCA 58.723 55.000 5.23 0.00 0.00 3.86
816 848 1.208293 GGGTAACTCTCAAGGCCTCAG 59.792 57.143 5.23 5.36 0.00 3.35
817 849 1.208293 GGTAACTCTCAAGGCCTCAGG 59.792 57.143 5.23 0.00 0.00 3.86
821 853 2.621070 ACTCTCAAGGCCTCAGGTTTA 58.379 47.619 5.23 0.00 0.00 2.01
824 856 4.783227 ACTCTCAAGGCCTCAGGTTTATAA 59.217 41.667 5.23 0.00 0.00 0.98
825 857 5.104735 ACTCTCAAGGCCTCAGGTTTATAAG 60.105 44.000 5.23 0.00 0.00 1.73
826 858 4.783227 TCTCAAGGCCTCAGGTTTATAAGT 59.217 41.667 5.23 0.00 0.00 2.24
827 859 5.099042 TCAAGGCCTCAGGTTTATAAGTC 57.901 43.478 5.23 0.00 0.00 3.01
828 860 4.534500 TCAAGGCCTCAGGTTTATAAGTCA 59.466 41.667 5.23 0.00 0.00 3.41
829 861 5.191722 TCAAGGCCTCAGGTTTATAAGTCAT 59.808 40.000 5.23 0.00 0.00 3.06
830 862 5.717119 AGGCCTCAGGTTTATAAGTCATT 57.283 39.130 0.00 0.00 0.00 2.57
831 863 5.440610 AGGCCTCAGGTTTATAAGTCATTG 58.559 41.667 0.00 0.00 0.00 2.82
832 864 4.036852 GGCCTCAGGTTTATAAGTCATTGC 59.963 45.833 0.00 0.00 0.00 3.56
833 865 4.884164 GCCTCAGGTTTATAAGTCATTGCT 59.116 41.667 0.00 0.00 0.00 3.91
834 866 5.358160 GCCTCAGGTTTATAAGTCATTGCTT 59.642 40.000 0.00 0.00 0.00 3.91
836 868 7.475840 CCTCAGGTTTATAAGTCATTGCTTTC 58.524 38.462 0.00 0.00 0.00 2.62
838 870 6.945435 TCAGGTTTATAAGTCATTGCTTTCCA 59.055 34.615 0.00 0.00 0.00 3.53
839 871 7.121168 TCAGGTTTATAAGTCATTGCTTTCCAG 59.879 37.037 0.00 0.00 0.00 3.86
840 872 6.948309 AGGTTTATAAGTCATTGCTTTCCAGT 59.052 34.615 0.00 0.00 0.00 4.00
841 873 7.121315 AGGTTTATAAGTCATTGCTTTCCAGTC 59.879 37.037 0.00 0.00 0.00 3.51
842 874 7.121315 GGTTTATAAGTCATTGCTTTCCAGTCT 59.879 37.037 0.00 0.00 0.00 3.24
843 875 9.162764 GTTTATAAGTCATTGCTTTCCAGTCTA 57.837 33.333 0.00 0.00 0.00 2.59
844 876 9.733556 TTTATAAGTCATTGCTTTCCAGTCTAA 57.266 29.630 0.00 0.00 0.00 2.10
845 877 7.856145 ATAAGTCATTGCTTTCCAGTCTAAG 57.144 36.000 0.00 0.00 0.00 2.18
846 878 4.583871 AGTCATTGCTTTCCAGTCTAAGG 58.416 43.478 0.00 0.00 0.00 2.69
848 880 2.879103 TTGCTTTCCAGTCTAAGGGG 57.121 50.000 0.00 0.00 0.00 4.79
849 881 1.742308 TGCTTTCCAGTCTAAGGGGT 58.258 50.000 0.00 0.00 0.00 4.95
850 882 1.628846 TGCTTTCCAGTCTAAGGGGTC 59.371 52.381 0.00 0.00 0.00 4.46
851 883 1.628846 GCTTTCCAGTCTAAGGGGTCA 59.371 52.381 0.00 0.00 0.00 4.02
852 884 2.355209 GCTTTCCAGTCTAAGGGGTCAG 60.355 54.545 0.00 0.00 0.00 3.51
853 885 2.715763 TTCCAGTCTAAGGGGTCAGT 57.284 50.000 0.00 0.00 0.00 3.41
911 1290 6.039829 GGAGAAACTTTCCAGTCAAATGTTCT 59.960 38.462 0.00 0.00 34.74 3.01
913 1292 6.378280 AGAAACTTTCCAGTCAAATGTTCTGT 59.622 34.615 0.00 0.00 30.45 3.41
922 1315 4.641989 AGTCAAATGTTCTGTCTTGCTTGT 59.358 37.500 0.00 0.00 0.00 3.16
962 1362 1.746787 TGCTTCGACCACGCTATTCTA 59.253 47.619 0.00 0.00 39.58 2.10
970 1370 3.898529 ACCACGCTATTCTATCTTACGC 58.101 45.455 0.00 0.00 0.00 4.42
989 1389 1.088306 CGTAGCTAGCCTATCTCCCG 58.912 60.000 12.13 0.00 0.00 5.14
997 1397 1.536943 GCCTATCTCCCGTAGCCCAG 61.537 65.000 0.00 0.00 0.00 4.45
998 1398 0.178958 CCTATCTCCCGTAGCCCAGT 60.179 60.000 0.00 0.00 0.00 4.00
999 1399 1.249407 CTATCTCCCGTAGCCCAGTC 58.751 60.000 0.00 0.00 0.00 3.51
1000 1400 0.554305 TATCTCCCGTAGCCCAGTCA 59.446 55.000 0.00 0.00 0.00 3.41
1001 1401 0.105453 ATCTCCCGTAGCCCAGTCAT 60.105 55.000 0.00 0.00 0.00 3.06
1002 1402 1.043116 TCTCCCGTAGCCCAGTCATG 61.043 60.000 0.00 0.00 0.00 3.07
1004 1404 2.584064 CCGTAGCCCAGTCATGCA 59.416 61.111 0.00 0.00 0.00 3.96
1005 1405 1.146930 CCGTAGCCCAGTCATGCAT 59.853 57.895 0.00 0.00 0.00 3.96
1018 1433 2.053865 ATGCATCCCCTTTGGTGCG 61.054 57.895 0.00 0.00 41.35 5.34
1044 1469 6.740002 CACTGCAATCTTTGAAATCTTCTACG 59.260 38.462 0.00 0.00 0.00 3.51
1047 1472 5.573146 CAATCTTTGAAATCTTCTACGCCC 58.427 41.667 0.00 0.00 0.00 6.13
1095 1526 2.438795 GCCTGGGTTTGGTGGCTA 59.561 61.111 0.00 0.00 41.92 3.93
1197 1628 0.615331 TCTGGCTCACTGATTGGGAC 59.385 55.000 0.00 0.00 31.87 4.46
1218 1649 3.008594 ACACGGGAAGATTATGTGGTTCA 59.991 43.478 0.00 0.00 34.93 3.18
1317 1753 2.546778 GGCTTTGCAATCATGGACATG 58.453 47.619 0.00 5.95 40.09 3.21
1380 1816 4.535781 AGCTGCAATTATTACATGACCCA 58.464 39.130 0.00 0.00 0.00 4.51
1385 1821 4.037923 GCAATTATTACATGACCCACCCAG 59.962 45.833 0.00 0.00 0.00 4.45
1748 2196 2.610859 GGAACTGCCCCCTCCTCA 60.611 66.667 0.00 0.00 0.00 3.86
1749 2197 2.003548 GGAACTGCCCCCTCCTCAT 61.004 63.158 0.00 0.00 0.00 2.90
1753 2213 2.040464 TGCCCCCTCCTCATCCTC 60.040 66.667 0.00 0.00 0.00 3.71
1847 2307 3.620488 TCCCTAATCGAAGCAAGCAATT 58.380 40.909 0.00 0.00 0.00 2.32
1888 2348 4.023878 GCTCTCACTAGGTACGTCATTAGG 60.024 50.000 0.00 0.00 0.00 2.69
1889 2349 3.881688 TCTCACTAGGTACGTCATTAGGC 59.118 47.826 0.00 0.00 0.00 3.93
1890 2350 3.623703 TCACTAGGTACGTCATTAGGCA 58.376 45.455 0.00 0.00 0.00 4.75
1891 2351 4.212716 TCACTAGGTACGTCATTAGGCAT 58.787 43.478 0.00 0.00 0.00 4.40
1892 2352 4.647853 TCACTAGGTACGTCATTAGGCATT 59.352 41.667 0.00 0.00 0.00 3.56
1893 2353 4.982916 CACTAGGTACGTCATTAGGCATTC 59.017 45.833 0.00 0.00 0.00 2.67
1894 2354 3.093717 AGGTACGTCATTAGGCATTCG 57.906 47.619 0.00 0.00 0.00 3.34
1895 2355 2.429610 AGGTACGTCATTAGGCATTCGT 59.570 45.455 0.00 0.00 35.73 3.85
1896 2356 3.118884 AGGTACGTCATTAGGCATTCGTT 60.119 43.478 0.00 0.00 33.70 3.85
1897 2357 4.098349 AGGTACGTCATTAGGCATTCGTTA 59.902 41.667 0.00 0.00 33.70 3.18
1898 2358 4.805192 GGTACGTCATTAGGCATTCGTTAA 59.195 41.667 0.00 0.00 33.70 2.01
1899 2359 4.852609 ACGTCATTAGGCATTCGTTAAC 57.147 40.909 0.00 0.00 0.00 2.01
1900 2360 3.619929 ACGTCATTAGGCATTCGTTAACC 59.380 43.478 0.00 0.00 0.00 2.85
1901 2361 3.619483 CGTCATTAGGCATTCGTTAACCA 59.381 43.478 0.00 0.00 0.00 3.67
1902 2362 4.260212 CGTCATTAGGCATTCGTTAACCAG 60.260 45.833 0.00 0.00 0.00 4.00
1903 2363 4.634443 GTCATTAGGCATTCGTTAACCAGT 59.366 41.667 0.00 0.00 0.00 4.00
1904 2364 5.123344 GTCATTAGGCATTCGTTAACCAGTT 59.877 40.000 0.00 0.00 0.00 3.16
1905 2365 5.123186 TCATTAGGCATTCGTTAACCAGTTG 59.877 40.000 0.00 0.00 0.00 3.16
1906 2366 3.134574 AGGCATTCGTTAACCAGTTGA 57.865 42.857 0.00 0.00 0.00 3.18
1907 2367 3.482436 AGGCATTCGTTAACCAGTTGAA 58.518 40.909 0.00 0.00 0.00 2.69
1908 2368 3.252458 AGGCATTCGTTAACCAGTTGAAC 59.748 43.478 0.00 0.00 0.00 3.18
1909 2369 3.252458 GGCATTCGTTAACCAGTTGAACT 59.748 43.478 0.00 0.00 0.00 3.01
1910 2370 4.219033 GCATTCGTTAACCAGTTGAACTG 58.781 43.478 18.04 18.04 45.53 3.16
1933 2393 3.756963 GGGTATGGTTCAGAACAAAGTCC 59.243 47.826 15.36 9.65 0.00 3.85
1934 2394 4.506802 GGGTATGGTTCAGAACAAAGTCCT 60.507 45.833 15.36 0.00 0.00 3.85
1938 2398 3.454447 TGGTTCAGAACAAAGTCCTCTGA 59.546 43.478 15.36 0.00 42.91 3.27
1947 2407 4.446371 ACAAAGTCCTCTGACAGAACTTG 58.554 43.478 18.80 15.36 44.33 3.16
1960 2422 2.557056 CAGAACTTGTCCCTAGTCACGA 59.443 50.000 0.00 0.00 0.00 4.35
1978 2440 3.672397 CACGATGACTGAACTCTGAACTG 59.328 47.826 0.00 0.00 0.00 3.16
1982 2444 2.287849 TGACTGAACTCTGAACTGCTCG 60.288 50.000 0.00 0.00 0.00 5.03
2001 2463 3.730761 CTCTGCAGCACGGCCAAC 61.731 66.667 9.47 0.00 0.00 3.77
2003 2465 3.367743 CTGCAGCACGGCCAACAT 61.368 61.111 2.24 0.00 0.00 2.71
2004 2466 2.033294 TGCAGCACGGCCAACATA 59.967 55.556 2.24 0.00 0.00 2.29
2005 2467 1.985447 CTGCAGCACGGCCAACATAG 61.985 60.000 2.24 0.00 0.00 2.23
2006 2468 2.764314 GCAGCACGGCCAACATAGG 61.764 63.158 2.24 0.00 0.00 2.57
2014 2476 3.333414 CCAACATAGGCATCGCGG 58.667 61.111 6.13 0.00 0.00 6.46
2016 2478 2.591715 AACATAGGCATCGCGGGC 60.592 61.111 6.13 11.04 0.00 6.13
2017 2479 3.106986 AACATAGGCATCGCGGGCT 62.107 57.895 20.03 17.71 46.47 5.19
2018 2480 2.281070 CATAGGCATCGCGGGCTT 60.281 61.111 15.97 14.00 44.09 4.35
2019 2481 2.281070 ATAGGCATCGCGGGCTTG 60.281 61.111 15.97 5.92 44.09 4.01
2020 2482 3.106986 ATAGGCATCGCGGGCTTGT 62.107 57.895 15.97 7.85 44.09 3.16
2022 2484 4.179579 GGCATCGCGGGCTTGTTC 62.180 66.667 20.03 3.10 0.00 3.18
2023 2485 3.430862 GCATCGCGGGCTTGTTCA 61.431 61.111 6.13 0.00 0.00 3.18
2034 3304 2.290577 GGGCTTGTTCACTCATCCTCTT 60.291 50.000 0.00 0.00 0.00 2.85
2035 3305 2.746362 GGCTTGTTCACTCATCCTCTTG 59.254 50.000 0.00 0.00 0.00 3.02
2037 3307 3.434984 GCTTGTTCACTCATCCTCTTGAC 59.565 47.826 0.00 0.00 0.00 3.18
2038 3308 4.635223 CTTGTTCACTCATCCTCTTGACA 58.365 43.478 0.00 0.00 0.00 3.58
2039 3309 4.263018 TGTTCACTCATCCTCTTGACAG 57.737 45.455 0.00 0.00 0.00 3.51
2040 3310 2.999355 GTTCACTCATCCTCTTGACAGC 59.001 50.000 0.00 0.00 0.00 4.40
2042 3312 0.908198 ACTCATCCTCTTGACAGCCC 59.092 55.000 0.00 0.00 0.00 5.19
2043 3313 0.907486 CTCATCCTCTTGACAGCCCA 59.093 55.000 0.00 0.00 0.00 5.36
2045 3315 0.617413 CATCCTCTTGACAGCCCAGT 59.383 55.000 0.00 0.00 0.00 4.00
2046 3316 0.617413 ATCCTCTTGACAGCCCAGTG 59.383 55.000 0.00 0.00 0.00 3.66
2048 3318 1.483595 CCTCTTGACAGCCCAGTGGA 61.484 60.000 11.95 0.00 0.00 4.02
2050 3320 0.843309 TCTTGACAGCCCAGTGGAAA 59.157 50.000 11.95 0.00 0.00 3.13
2051 3321 1.214175 TCTTGACAGCCCAGTGGAAAA 59.786 47.619 11.95 0.00 0.00 2.29
2053 3323 0.257328 TGACAGCCCAGTGGAAAACA 59.743 50.000 11.95 1.33 0.00 2.83
2055 3325 0.550914 ACAGCCCAGTGGAAAACAGA 59.449 50.000 11.95 0.00 0.00 3.41
2056 3326 0.954452 CAGCCCAGTGGAAAACAGAC 59.046 55.000 11.95 0.00 0.00 3.51
2057 3327 0.846693 AGCCCAGTGGAAAACAGACT 59.153 50.000 11.95 0.00 0.00 3.24
2058 3328 0.954452 GCCCAGTGGAAAACAGACTG 59.046 55.000 11.95 0.00 37.45 3.51
2059 3329 1.750682 GCCCAGTGGAAAACAGACTGT 60.751 52.381 11.95 1.07 36.20 3.55
2061 3331 2.421388 CCCAGTGGAAAACAGACTGTGA 60.421 50.000 11.95 0.00 36.20 3.58
2063 3333 3.694072 CCAGTGGAAAACAGACTGTGAAA 59.306 43.478 9.33 0.00 36.20 2.69
2065 3335 4.396166 CAGTGGAAAACAGACTGTGAAACT 59.604 41.667 9.33 6.39 38.04 2.66
2072 3980 5.353394 AACAGACTGTGAAACTTGGACTA 57.647 39.130 9.33 0.00 38.04 2.59
2073 3981 4.950050 ACAGACTGTGAAACTTGGACTAG 58.050 43.478 7.47 0.00 38.04 2.57
2075 3983 4.747108 CAGACTGTGAAACTTGGACTAGTG 59.253 45.833 0.00 0.00 38.04 2.74
2079 3987 1.073284 TGAAACTTGGACTAGTGGGCC 59.927 52.381 0.00 0.00 45.52 5.80
2093 4001 7.201794 GGACTAGTGGGCCTATGTTTATTTTTC 60.202 40.741 4.53 0.00 40.87 2.29
2094 4002 7.410991 ACTAGTGGGCCTATGTTTATTTTTCT 58.589 34.615 4.53 0.00 0.00 2.52
2095 4003 7.893833 ACTAGTGGGCCTATGTTTATTTTTCTT 59.106 33.333 4.53 0.00 0.00 2.52
2096 4004 6.935167 AGTGGGCCTATGTTTATTTTTCTTG 58.065 36.000 4.53 0.00 0.00 3.02
2097 4005 6.070824 AGTGGGCCTATGTTTATTTTTCTTGG 60.071 38.462 4.53 0.00 0.00 3.61
2098 4006 5.188751 TGGGCCTATGTTTATTTTTCTTGGG 59.811 40.000 4.53 0.00 0.00 4.12
2099 4007 5.116180 GGCCTATGTTTATTTTTCTTGGGC 58.884 41.667 0.00 0.00 34.13 5.36
2100 4008 5.337975 GGCCTATGTTTATTTTTCTTGGGCA 60.338 40.000 0.00 0.00 35.65 5.36
2101 4009 6.169800 GCCTATGTTTATTTTTCTTGGGCAA 58.830 36.000 0.00 0.00 34.68 4.52
2102 4010 6.823182 GCCTATGTTTATTTTTCTTGGGCAAT 59.177 34.615 0.00 0.00 34.68 3.56
2103 4011 7.336679 GCCTATGTTTATTTTTCTTGGGCAATT 59.663 33.333 0.00 0.00 34.68 2.32
2104 4012 9.230122 CCTATGTTTATTTTTCTTGGGCAATTT 57.770 29.630 0.00 0.00 0.00 1.82
2106 4014 7.183580 TGTTTATTTTTCTTGGGCAATTTCG 57.816 32.000 0.00 0.00 0.00 3.46
2108 4016 2.162319 TTTTCTTGGGCAATTTCGGC 57.838 45.000 0.00 0.00 0.00 5.54
2117 4025 0.179174 GCAATTTCGGCCTAACCACG 60.179 55.000 0.00 0.00 39.03 4.94
2118 4026 0.450184 CAATTTCGGCCTAACCACGG 59.550 55.000 0.00 0.00 39.03 4.94
2119 4027 0.037160 AATTTCGGCCTAACCACGGT 59.963 50.000 0.00 0.00 39.03 4.83
2120 4028 0.675522 ATTTCGGCCTAACCACGGTG 60.676 55.000 0.00 0.00 39.03 4.94
2122 4030 4.388499 CGGCCTAACCACGGTGCT 62.388 66.667 0.00 0.00 39.03 4.40
2123 4031 2.033602 GGCCTAACCACGGTGCTT 59.966 61.111 1.68 0.00 38.86 3.91
2124 4032 1.602605 GGCCTAACCACGGTGCTTT 60.603 57.895 1.68 0.61 38.86 3.51
2125 4033 1.579429 GCCTAACCACGGTGCTTTG 59.421 57.895 1.68 0.00 0.00 2.77
2126 4034 1.579429 CCTAACCACGGTGCTTTGC 59.421 57.895 1.68 0.00 0.00 3.68
2127 4035 0.889186 CCTAACCACGGTGCTTTGCT 60.889 55.000 1.68 0.00 0.00 3.91
2129 4037 0.179043 TAACCACGGTGCTTTGCTCA 60.179 50.000 1.68 0.00 0.00 4.26
2132 4040 1.164411 CCACGGTGCTTTGCTCATTA 58.836 50.000 1.68 0.00 0.00 1.90
2133 4041 1.131126 CCACGGTGCTTTGCTCATTAG 59.869 52.381 1.68 0.00 0.00 1.73
2134 4042 1.806542 CACGGTGCTTTGCTCATTAGT 59.193 47.619 0.00 0.00 0.00 2.24
2135 4043 2.226437 CACGGTGCTTTGCTCATTAGTT 59.774 45.455 0.00 0.00 0.00 2.24
2136 4044 2.884639 ACGGTGCTTTGCTCATTAGTTT 59.115 40.909 0.00 0.00 0.00 2.66
2137 4045 3.317993 ACGGTGCTTTGCTCATTAGTTTT 59.682 39.130 0.00 0.00 0.00 2.43
2138 4046 4.202111 ACGGTGCTTTGCTCATTAGTTTTT 60.202 37.500 0.00 0.00 0.00 1.94
2159 4067 3.781341 TTTAGCAACGCTTGTTAGTCG 57.219 42.857 0.00 0.00 40.44 4.18
2160 4068 1.705256 TAGCAACGCTTGTTAGTCGG 58.295 50.000 0.00 0.00 40.44 4.79
2161 4069 1.154469 GCAACGCTTGTTAGTCGGC 60.154 57.895 0.00 0.00 33.55 5.54
2162 4070 1.495951 CAACGCTTGTTAGTCGGCC 59.504 57.895 0.00 0.00 33.55 6.13
2163 4071 0.949105 CAACGCTTGTTAGTCGGCCT 60.949 55.000 0.00 0.00 33.55 5.19
2164 4072 0.604578 AACGCTTGTTAGTCGGCCTA 59.395 50.000 0.00 0.00 32.95 3.93
2165 4073 0.822164 ACGCTTGTTAGTCGGCCTAT 59.178 50.000 0.00 0.00 0.00 2.57
2166 4074 1.209128 CGCTTGTTAGTCGGCCTATG 58.791 55.000 0.00 0.00 0.00 2.23
2167 4075 1.583054 GCTTGTTAGTCGGCCTATGG 58.417 55.000 0.00 0.00 0.00 2.74
2168 4076 1.134491 GCTTGTTAGTCGGCCTATGGT 60.134 52.381 0.00 0.00 0.00 3.55
2169 4077 2.679930 GCTTGTTAGTCGGCCTATGGTT 60.680 50.000 0.00 0.00 0.00 3.67
2170 4078 3.606687 CTTGTTAGTCGGCCTATGGTTT 58.393 45.455 0.00 0.00 0.00 3.27
2171 4079 3.706600 TGTTAGTCGGCCTATGGTTTT 57.293 42.857 0.00 0.00 0.00 2.43
2172 4080 4.023726 TGTTAGTCGGCCTATGGTTTTT 57.976 40.909 0.00 0.00 0.00 1.94
2192 4100 2.793946 GCAAGTGCGCCTATGTGG 59.206 61.111 4.18 0.00 39.35 4.17
2193 4101 2.040544 GCAAGTGCGCCTATGTGGT 61.041 57.895 4.18 0.00 38.35 4.16
2194 4102 0.742990 GCAAGTGCGCCTATGTGGTA 60.743 55.000 4.18 0.00 38.35 3.25
2195 4103 1.006832 CAAGTGCGCCTATGTGGTAC 58.993 55.000 4.18 0.00 38.35 3.34
2196 4104 0.611200 AAGTGCGCCTATGTGGTACA 59.389 50.000 4.18 0.00 38.35 2.90
2285 4193 9.987272 ACATCAAGAGAATATGTCGAATATTCA 57.013 29.630 25.35 14.60 41.22 2.57
2288 4196 9.987272 TCAAGAGAATATGTCGAATATTCATGT 57.013 29.630 25.35 14.86 41.22 3.21
2400 4308 9.480053 AAGAAAAATGGTCATGTATGTCAAAAG 57.520 29.630 0.00 0.00 0.00 2.27
2401 4309 8.859090 AGAAAAATGGTCATGTATGTCAAAAGA 58.141 29.630 0.00 0.00 0.00 2.52
2402 4310 9.132521 GAAAAATGGTCATGTATGTCAAAAGAG 57.867 33.333 0.00 0.00 0.00 2.85
2403 4311 7.765695 AAATGGTCATGTATGTCAAAAGAGT 57.234 32.000 0.00 0.00 0.00 3.24
2404 4312 7.765695 AATGGTCATGTATGTCAAAAGAGTT 57.234 32.000 0.00 0.00 0.00 3.01
2405 4313 6.558771 TGGTCATGTATGTCAAAAGAGTTG 57.441 37.500 0.00 0.00 0.00 3.16
2406 4314 6.061441 TGGTCATGTATGTCAAAAGAGTTGT 58.939 36.000 0.00 0.00 0.00 3.32
2407 4315 6.545666 TGGTCATGTATGTCAAAAGAGTTGTT 59.454 34.615 0.00 0.00 0.00 2.83
2408 4316 7.078228 GGTCATGTATGTCAAAAGAGTTGTTC 58.922 38.462 0.00 0.00 0.00 3.18
2409 4317 7.255104 GGTCATGTATGTCAAAAGAGTTGTTCA 60.255 37.037 0.00 0.00 0.00 3.18
2410 4318 8.292448 GTCATGTATGTCAAAAGAGTTGTTCAT 58.708 33.333 0.00 0.00 0.00 2.57
2411 4319 9.500785 TCATGTATGTCAAAAGAGTTGTTCATA 57.499 29.630 0.00 0.00 0.00 2.15
2412 4320 9.546909 CATGTATGTCAAAAGAGTTGTTCATAC 57.453 33.333 18.35 18.35 37.92 2.39
2413 4321 8.669946 TGTATGTCAAAAGAGTTGTTCATACA 57.330 30.769 20.94 20.94 40.64 2.29
2414 4322 9.283768 TGTATGTCAAAAGAGTTGTTCATACAT 57.716 29.630 20.94 11.89 39.65 2.29
2417 4325 9.683069 ATGTCAAAAGAGTTGTTCATACATTTC 57.317 29.630 0.00 0.00 33.44 2.17
2418 4326 8.681806 TGTCAAAAGAGTTGTTCATACATTTCA 58.318 29.630 0.00 0.00 33.44 2.69
2419 4327 9.173939 GTCAAAAGAGTTGTTCATACATTTCAG 57.826 33.333 0.00 0.00 33.44 3.02
2420 4328 9.119418 TCAAAAGAGTTGTTCATACATTTCAGA 57.881 29.630 0.00 0.00 33.44 3.27
2421 4329 9.734620 CAAAAGAGTTGTTCATACATTTCAGAA 57.265 29.630 0.00 0.00 33.44 3.02
2422 4330 9.736023 AAAAGAGTTGTTCATACATTTCAGAAC 57.264 29.630 0.00 0.00 40.45 3.01
2423 4331 8.450578 AAGAGTTGTTCATACATTTCAGAACA 57.549 30.769 0.00 0.00 45.94 3.18
2446 4354 9.492973 AACAAATATTCATGTTGAAGAAAAGGG 57.507 29.630 4.99 0.00 40.05 3.95
2447 4355 8.650490 ACAAATATTCATGTTGAAGAAAAGGGT 58.350 29.630 0.44 0.00 40.05 4.34
2448 4356 9.492973 CAAATATTCATGTTGAAGAAAAGGGTT 57.507 29.630 0.00 0.00 40.05 4.11
2449 4357 9.710900 AAATATTCATGTTGAAGAAAAGGGTTC 57.289 29.630 0.00 0.00 40.05 3.62
2450 4358 6.729690 ATTCATGTTGAAGAAAAGGGTTCA 57.270 33.333 0.00 0.00 40.05 3.18
2451 4359 6.537453 TTCATGTTGAAGAAAAGGGTTCAA 57.463 33.333 0.00 0.00 39.73 2.69
2452 4360 6.147864 TCATGTTGAAGAAAAGGGTTCAAG 57.852 37.500 0.00 0.00 42.01 3.02
2453 4361 5.890985 TCATGTTGAAGAAAAGGGTTCAAGA 59.109 36.000 0.00 0.00 42.01 3.02
2454 4362 5.576447 TGTTGAAGAAAAGGGTTCAAGAC 57.424 39.130 0.00 0.00 42.01 3.01
2455 4363 5.261216 TGTTGAAGAAAAGGGTTCAAGACT 58.739 37.500 0.00 0.00 42.01 3.24
2456 4364 5.714806 TGTTGAAGAAAAGGGTTCAAGACTT 59.285 36.000 0.00 0.00 42.01 3.01
2457 4365 6.127730 TGTTGAAGAAAAGGGTTCAAGACTTC 60.128 38.462 0.00 0.00 42.01 3.01
2458 4366 5.505780 TGAAGAAAAGGGTTCAAGACTTCA 58.494 37.500 0.00 0.00 39.61 3.02
2459 4367 5.949354 TGAAGAAAAGGGTTCAAGACTTCAA 59.051 36.000 0.00 0.00 39.19 2.69
2460 4368 6.435904 TGAAGAAAAGGGTTCAAGACTTCAAA 59.564 34.615 0.00 0.00 39.19 2.69
2461 4369 6.850752 AGAAAAGGGTTCAAGACTTCAAAA 57.149 33.333 0.00 0.00 0.00 2.44
2462 4370 6.867550 AGAAAAGGGTTCAAGACTTCAAAAG 58.132 36.000 0.00 0.00 0.00 2.27
2463 4371 5.598416 AAAGGGTTCAAGACTTCAAAAGG 57.402 39.130 0.00 0.00 0.00 3.11
2464 4372 4.519906 AGGGTTCAAGACTTCAAAAGGA 57.480 40.909 0.00 0.00 0.00 3.36
2465 4373 4.867086 AGGGTTCAAGACTTCAAAAGGAA 58.133 39.130 0.00 0.00 0.00 3.36
2513 4421 9.816354 ACTACAAAAGTGCAGTAAAAATCAAAT 57.184 25.926 0.00 0.00 36.93 2.32
2587 4495 9.914131 ATTGACCTAAAAAGTGAAGAAATAAGC 57.086 29.630 0.00 0.00 0.00 3.09
2588 4496 8.458573 TGACCTAAAAAGTGAAGAAATAAGCA 57.541 30.769 0.00 0.00 0.00 3.91
2589 4497 8.908903 TGACCTAAAAAGTGAAGAAATAAGCAA 58.091 29.630 0.00 0.00 0.00 3.91
2590 4498 9.744468 GACCTAAAAAGTGAAGAAATAAGCAAA 57.256 29.630 0.00 0.00 0.00 3.68
2693 4601 7.784633 ATGAAAACAAAACCCATTGTAAGTG 57.215 32.000 0.00 0.00 42.49 3.16
2694 4602 6.936279 TGAAAACAAAACCCATTGTAAGTGA 58.064 32.000 0.00 0.00 42.49 3.41
2695 4603 7.560368 TGAAAACAAAACCCATTGTAAGTGAT 58.440 30.769 0.00 0.00 42.49 3.06
2696 4604 8.043710 TGAAAACAAAACCCATTGTAAGTGATT 58.956 29.630 0.00 0.00 42.49 2.57
2697 4605 8.800370 AAAACAAAACCCATTGTAAGTGATTT 57.200 26.923 0.00 0.00 42.49 2.17
2698 4606 7.784633 AACAAAACCCATTGTAAGTGATTTG 57.215 32.000 0.00 0.00 42.49 2.32
2700 4608 7.560368 ACAAAACCCATTGTAAGTGATTTGAA 58.440 30.769 0.00 0.00 41.56 2.69
2729 4735 9.430399 AAAAAGACCATGATCATTCTATGGATT 57.570 29.630 17.29 9.51 43.15 3.01
2731 4737 7.997773 AGACCATGATCATTCTATGGATTTG 57.002 36.000 17.29 0.00 43.15 2.32
2733 4739 6.312529 ACCATGATCATTCTATGGATTTGCT 58.687 36.000 17.29 0.00 43.15 3.91
2735 4741 8.114102 ACCATGATCATTCTATGGATTTGCTAT 58.886 33.333 17.29 0.00 43.15 2.97
2736 4742 8.622157 CCATGATCATTCTATGGATTTGCTATC 58.378 37.037 5.16 0.00 43.15 2.08
2737 4743 9.397280 CATGATCATTCTATGGATTTGCTATCT 57.603 33.333 5.16 0.00 0.00 1.98
2738 4744 9.616156 ATGATCATTCTATGGATTTGCTATCTC 57.384 33.333 1.18 0.00 0.00 2.75
2739 4745 8.823794 TGATCATTCTATGGATTTGCTATCTCT 58.176 33.333 0.00 0.00 0.00 3.10
2743 4749 9.941325 CATTCTATGGATTTGCTATCTCTAAGT 57.059 33.333 0.00 0.00 0.00 2.24
2745 4751 9.770097 TTCTATGGATTTGCTATCTCTAAGTTG 57.230 33.333 0.00 0.00 0.00 3.16
2746 4752 8.370940 TCTATGGATTTGCTATCTCTAAGTTGG 58.629 37.037 0.00 0.00 0.00 3.77
2747 4753 6.313519 TGGATTTGCTATCTCTAAGTTGGT 57.686 37.500 0.00 0.00 0.00 3.67
2748 4754 6.721318 TGGATTTGCTATCTCTAAGTTGGTT 58.279 36.000 0.00 0.00 0.00 3.67
2749 4755 7.175104 TGGATTTGCTATCTCTAAGTTGGTTT 58.825 34.615 0.00 0.00 0.00 3.27
2751 4757 8.184848 GGATTTGCTATCTCTAAGTTGGTTTTC 58.815 37.037 0.00 0.00 0.00 2.29
2752 4758 8.635765 ATTTGCTATCTCTAAGTTGGTTTTCA 57.364 30.769 0.00 0.00 0.00 2.69
2753 4759 8.635765 TTTGCTATCTCTAAGTTGGTTTTCAT 57.364 30.769 0.00 0.00 0.00 2.57
2755 4761 8.718102 TGCTATCTCTAAGTTGGTTTTCATAC 57.282 34.615 0.00 0.00 0.00 2.39
2756 4762 7.491372 TGCTATCTCTAAGTTGGTTTTCATACG 59.509 37.037 0.00 0.00 0.00 3.06
2757 4763 6.663944 ATCTCTAAGTTGGTTTTCATACGC 57.336 37.500 0.00 0.00 0.00 4.42
2758 4764 5.543714 TCTCTAAGTTGGTTTTCATACGCA 58.456 37.500 0.00 0.00 0.00 5.24
2759 4765 5.637810 TCTCTAAGTTGGTTTTCATACGCAG 59.362 40.000 0.00 0.00 0.00 5.18
2760 4766 3.915437 AAGTTGGTTTTCATACGCAGG 57.085 42.857 0.00 0.00 0.00 4.85
2761 4767 1.539827 AGTTGGTTTTCATACGCAGGC 59.460 47.619 0.00 0.00 0.00 4.85
2762 4768 0.885196 TTGGTTTTCATACGCAGGCC 59.115 50.000 0.00 0.00 0.00 5.19
2763 4769 0.250945 TGGTTTTCATACGCAGGCCA 60.251 50.000 5.01 0.00 0.00 5.36
2765 4771 0.451783 GTTTTCATACGCAGGCCAGG 59.548 55.000 5.01 0.00 0.00 4.45
2768 4774 2.572095 TTCATACGCAGGCCAGGTCG 62.572 60.000 5.01 4.85 0.00 4.79
2774 4780 2.360350 CAGGCCAGGTCGCACATT 60.360 61.111 5.01 0.00 0.00 2.71
2775 4781 1.078497 CAGGCCAGGTCGCACATTA 60.078 57.895 5.01 0.00 0.00 1.90
2776 4782 0.464373 CAGGCCAGGTCGCACATTAT 60.464 55.000 5.01 0.00 0.00 1.28
2777 4783 1.128200 AGGCCAGGTCGCACATTATA 58.872 50.000 5.01 0.00 0.00 0.98
2778 4784 1.202651 AGGCCAGGTCGCACATTATAC 60.203 52.381 5.01 0.00 0.00 1.47
2779 4785 1.474320 GGCCAGGTCGCACATTATACA 60.474 52.381 0.00 0.00 0.00 2.29
2780 4786 2.285083 GCCAGGTCGCACATTATACAA 58.715 47.619 0.00 0.00 0.00 2.41
2781 4787 2.878406 GCCAGGTCGCACATTATACAAT 59.122 45.455 0.00 0.00 0.00 2.71
2782 4788 3.303990 GCCAGGTCGCACATTATACAATG 60.304 47.826 0.00 0.00 45.94 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 63 9.464714 GGAATTTCCTCTAGTTTTCTGTTTTTC 57.535 33.333 8.25 0.00 32.53 2.29
157 160 3.689649 GTCGGCATAACACAAAAGAGGAT 59.310 43.478 0.00 0.00 0.00 3.24
195 198 3.565902 GGCTATGCTGACAAACCCTATTC 59.434 47.826 0.00 0.00 0.00 1.75
221 224 2.384828 AGGTGACCCAAAACAAGGTTC 58.615 47.619 0.00 0.00 36.17 3.62
242 266 4.649218 GGATGTGGGTTTATGTATTTGCCT 59.351 41.667 0.00 0.00 0.00 4.75
260 284 4.499357 GGATAAAAGTACGAGCGAGGATGT 60.499 45.833 0.00 0.00 0.00 3.06
422 449 7.070571 ACCCATTTCCAAACTGATTCTTTACAA 59.929 33.333 0.00 0.00 0.00 2.41
451 478 5.612725 TTTTCCAAGGACTTGAAAGCATT 57.387 34.783 13.35 0.00 42.93 3.56
471 498 7.787028 TGGCAAAGTTCTAAATAGTGGTTTTT 58.213 30.769 0.00 0.00 0.00 1.94
511 538 3.831715 ACTTTGCGTCATTTTAGCCTC 57.168 42.857 0.00 0.00 0.00 4.70
513 540 6.364976 ACATTTTACTTTGCGTCATTTTAGCC 59.635 34.615 0.00 0.00 0.00 3.93
543 570 1.068055 TCGTCCGTTCAAACCTAGAGC 60.068 52.381 0.00 0.00 0.00 4.09
559 586 3.371063 TGCAGGGGAGACGTCGTC 61.371 66.667 17.70 17.70 0.00 4.20
560 587 3.681835 GTGCAGGGGAGACGTCGT 61.682 66.667 10.46 0.00 0.00 4.34
577 604 4.572985 TTGAGTGCAATTTTCCTGTCTG 57.427 40.909 0.00 0.00 0.00 3.51
704 736 1.371558 GCTGGTTCTGTCGGTTCCT 59.628 57.895 0.00 0.00 0.00 3.36
756 788 1.680522 CCATGACCAGAGAGACCCCG 61.681 65.000 0.00 0.00 0.00 5.73
762 794 1.474677 GCCATGACCATGACCAGAGAG 60.475 57.143 11.28 0.00 41.20 3.20
763 795 0.543277 GCCATGACCATGACCAGAGA 59.457 55.000 11.28 0.00 41.20 3.10
786 818 3.335729 AGTTACCCCCTTGGCCCG 61.336 66.667 0.00 0.00 37.83 6.13
789 821 0.696501 TTGAGAGTTACCCCCTTGGC 59.303 55.000 0.00 0.00 37.83 4.52
791 823 1.340114 GCCTTGAGAGTTACCCCCTTG 60.340 57.143 0.00 0.00 0.00 3.61
795 827 0.542333 GAGGCCTTGAGAGTTACCCC 59.458 60.000 6.77 0.00 0.00 4.95
802 834 3.922171 ATAAACCTGAGGCCTTGAGAG 57.078 47.619 6.77 0.40 0.00 3.20
804 836 5.104259 ACTTATAAACCTGAGGCCTTGAG 57.896 43.478 6.77 6.19 0.00 3.02
805 837 4.534500 TGACTTATAAACCTGAGGCCTTGA 59.466 41.667 6.77 0.00 0.00 3.02
806 838 4.843728 TGACTTATAAACCTGAGGCCTTG 58.156 43.478 6.77 2.72 0.00 3.61
807 839 5.717119 ATGACTTATAAACCTGAGGCCTT 57.283 39.130 6.77 0.00 0.00 4.35
809 841 4.036852 GCAATGACTTATAAACCTGAGGCC 59.963 45.833 0.00 0.00 0.00 5.19
811 843 7.396540 AAAGCAATGACTTATAAACCTGAGG 57.603 36.000 0.00 0.00 0.00 3.86
812 844 7.121168 TGGAAAGCAATGACTTATAAACCTGAG 59.879 37.037 0.00 0.00 0.00 3.35
813 845 6.945435 TGGAAAGCAATGACTTATAAACCTGA 59.055 34.615 0.00 0.00 0.00 3.86
815 847 6.948309 ACTGGAAAGCAATGACTTATAAACCT 59.052 34.615 0.00 0.00 0.00 3.50
816 848 7.121315 AGACTGGAAAGCAATGACTTATAAACC 59.879 37.037 0.00 0.00 0.00 3.27
817 849 8.045176 AGACTGGAAAGCAATGACTTATAAAC 57.955 34.615 0.00 0.00 0.00 2.01
821 853 6.825721 CCTTAGACTGGAAAGCAATGACTTAT 59.174 38.462 0.00 0.00 0.00 1.73
824 856 4.566488 CCCTTAGACTGGAAAGCAATGACT 60.566 45.833 0.00 0.00 0.00 3.41
825 857 3.691609 CCCTTAGACTGGAAAGCAATGAC 59.308 47.826 0.00 0.00 0.00 3.06
826 858 3.308402 CCCCTTAGACTGGAAAGCAATGA 60.308 47.826 0.00 0.00 0.00 2.57
827 859 3.019564 CCCCTTAGACTGGAAAGCAATG 58.980 50.000 0.00 0.00 0.00 2.82
828 860 2.649816 ACCCCTTAGACTGGAAAGCAAT 59.350 45.455 0.00 0.00 0.00 3.56
829 861 2.039879 GACCCCTTAGACTGGAAAGCAA 59.960 50.000 0.00 0.00 0.00 3.91
830 862 1.628846 GACCCCTTAGACTGGAAAGCA 59.371 52.381 0.00 0.00 0.00 3.91
831 863 1.628846 TGACCCCTTAGACTGGAAAGC 59.371 52.381 0.00 0.00 0.00 3.51
832 864 2.907042 ACTGACCCCTTAGACTGGAAAG 59.093 50.000 0.00 0.00 0.00 2.62
833 865 2.904434 GACTGACCCCTTAGACTGGAAA 59.096 50.000 0.00 0.00 0.00 3.13
834 866 2.158219 TGACTGACCCCTTAGACTGGAA 60.158 50.000 0.00 0.00 0.00 3.53
836 868 1.938585 TGACTGACCCCTTAGACTGG 58.061 55.000 0.00 0.00 0.00 4.00
838 870 3.264450 CCAATTGACTGACCCCTTAGACT 59.736 47.826 7.12 0.00 0.00 3.24
839 871 3.610911 CCAATTGACTGACCCCTTAGAC 58.389 50.000 7.12 0.00 0.00 2.59
840 872 2.576191 CCCAATTGACTGACCCCTTAGA 59.424 50.000 7.12 0.00 0.00 2.10
841 873 2.357154 CCCCAATTGACTGACCCCTTAG 60.357 54.545 7.12 0.00 0.00 2.18
842 874 1.638589 CCCCAATTGACTGACCCCTTA 59.361 52.381 7.12 0.00 0.00 2.69
843 875 0.409484 CCCCAATTGACTGACCCCTT 59.591 55.000 7.12 0.00 0.00 3.95
844 876 0.477597 TCCCCAATTGACTGACCCCT 60.478 55.000 7.12 0.00 0.00 4.79
845 877 0.407918 TTCCCCAATTGACTGACCCC 59.592 55.000 7.12 0.00 0.00 4.95
846 878 2.532250 ATTCCCCAATTGACTGACCC 57.468 50.000 7.12 0.00 0.00 4.46
848 880 3.506067 ACGAAATTCCCCAATTGACTGAC 59.494 43.478 7.12 0.00 32.18 3.51
849 881 3.505680 CACGAAATTCCCCAATTGACTGA 59.494 43.478 7.12 0.00 32.18 3.41
850 882 3.367292 CCACGAAATTCCCCAATTGACTG 60.367 47.826 7.12 0.00 32.18 3.51
851 883 2.825532 CCACGAAATTCCCCAATTGACT 59.174 45.455 7.12 0.00 32.18 3.41
852 884 2.823154 TCCACGAAATTCCCCAATTGAC 59.177 45.455 7.12 0.00 32.18 3.18
853 885 3.088532 CTCCACGAAATTCCCCAATTGA 58.911 45.455 7.12 0.00 32.18 2.57
911 1290 1.070786 GGGGACGACAAGCAAGACA 59.929 57.895 0.00 0.00 0.00 3.41
913 1292 1.344065 TAAGGGGACGACAAGCAAGA 58.656 50.000 0.00 0.00 0.00 3.02
922 1315 2.363038 CACGAACCATATAAGGGGACGA 59.637 50.000 13.47 0.00 34.12 4.20
957 1357 4.142643 GGCTAGCTACGCGTAAGATAGAAT 60.143 45.833 28.67 13.76 43.02 2.40
962 1362 1.606903 AGGCTAGCTACGCGTAAGAT 58.393 50.000 20.97 14.83 43.02 2.40
970 1370 1.088306 CGGGAGATAGGCTAGCTACG 58.912 60.000 15.45 16.77 0.00 3.51
976 1376 0.039326 GGGCTACGGGAGATAGGCTA 59.961 60.000 0.00 0.00 43.10 3.93
977 1377 1.228925 GGGCTACGGGAGATAGGCT 60.229 63.158 0.00 0.00 43.10 4.58
979 1379 0.178958 ACTGGGCTACGGGAGATAGG 60.179 60.000 0.00 0.00 0.00 2.57
980 1380 1.249407 GACTGGGCTACGGGAGATAG 58.751 60.000 0.00 0.00 0.00 2.08
982 1382 0.105453 ATGACTGGGCTACGGGAGAT 60.105 55.000 0.00 0.00 0.00 2.75
983 1383 1.043116 CATGACTGGGCTACGGGAGA 61.043 60.000 0.00 0.00 0.00 3.71
984 1384 1.443407 CATGACTGGGCTACGGGAG 59.557 63.158 0.00 0.00 0.00 4.30
985 1385 2.731571 GCATGACTGGGCTACGGGA 61.732 63.158 0.00 0.00 0.00 5.14
989 1389 0.536006 GGGATGCATGACTGGGCTAC 60.536 60.000 2.46 0.00 0.00 3.58
997 1397 0.819582 CACCAAAGGGGATGCATGAC 59.180 55.000 2.46 0.00 41.15 3.06
998 1398 0.971959 GCACCAAAGGGGATGCATGA 60.972 55.000 2.46 0.00 41.15 3.07
999 1399 1.518774 GCACCAAAGGGGATGCATG 59.481 57.895 2.46 0.00 41.15 4.06
1000 1400 2.053865 CGCACCAAAGGGGATGCAT 61.054 57.895 0.00 0.00 41.15 3.96
1001 1401 2.676121 CGCACCAAAGGGGATGCA 60.676 61.111 0.00 0.00 41.15 3.96
1002 1402 4.133796 GCGCACCAAAGGGGATGC 62.134 66.667 0.30 0.00 41.15 3.91
1004 1404 2.676471 GTGCGCACCAAAGGGGAT 60.676 61.111 30.12 0.00 41.15 3.85
1005 1405 3.884774 AGTGCGCACCAAAGGGGA 61.885 61.111 35.51 0.00 41.15 4.81
1018 1433 5.467705 AGAAGATTTCAAAGATTGCAGTGC 58.532 37.500 8.58 8.58 0.00 4.40
1044 1469 2.202987 CAGCTCGGAGACATGGGC 60.203 66.667 9.69 0.00 0.00 5.36
1047 1472 1.521010 CCAGCAGCTCGGAGACATG 60.521 63.158 9.69 5.15 0.00 3.21
1159 1590 1.553690 AACGGGTGGGAGATGGTGAG 61.554 60.000 0.00 0.00 0.00 3.51
1197 1628 3.374058 GTGAACCACATAATCTTCCCGTG 59.626 47.826 0.00 0.00 34.08 4.94
1218 1649 3.325201 GAATTCCGGCGGTCCAGGT 62.325 63.158 27.32 6.42 0.00 4.00
1258 1694 3.633065 GAGCTCGGTAGAAGTGGATAAGT 59.367 47.826 0.00 0.00 0.00 2.24
1259 1695 3.004944 GGAGCTCGGTAGAAGTGGATAAG 59.995 52.174 7.83 0.00 0.00 1.73
1317 1753 2.673368 CAAGTTGCGTTCCTCATAGGAC 59.327 50.000 0.00 0.00 45.78 3.85
1334 1770 1.372997 AGATCAACGACGCGCAAGT 60.373 52.632 5.73 0.00 41.68 3.16
1366 1802 2.578480 TGCTGGGTGGGTCATGTAATAA 59.422 45.455 0.00 0.00 0.00 1.40
1380 1816 0.403271 AGCTGTTGAAGATGCTGGGT 59.597 50.000 0.00 0.00 34.19 4.51
1439 1875 2.829023 TGACGGGGGAGATCTTAAACT 58.171 47.619 0.00 0.00 0.00 2.66
1510 1952 0.106419 ACCAGTTCTTTTTCCCGGCA 60.106 50.000 0.00 0.00 0.00 5.69
1671 2113 2.733218 CTCGCGTTCGTCTTGCCA 60.733 61.111 5.77 0.00 36.96 4.92
1675 2117 1.859427 TAGTGGCTCGCGTTCGTCTT 61.859 55.000 5.77 0.00 36.96 3.01
1748 2196 2.197465 GGGTGAACTTACCTGGAGGAT 58.803 52.381 0.00 0.00 40.66 3.24
1749 2197 1.132657 TGGGTGAACTTACCTGGAGGA 60.133 52.381 0.00 0.00 40.66 3.71
1753 2213 1.697432 TGACTGGGTGAACTTACCTGG 59.303 52.381 0.00 0.00 40.66 4.45
1838 2298 6.267817 TGAGCTAACATGATTAATTGCTTGC 58.732 36.000 0.00 0.00 0.00 4.01
1888 2348 4.219033 CAGTTCAACTGGTTAACGAATGC 58.781 43.478 9.96 0.00 42.35 3.56
1900 2360 2.879103 ACCATACCCCAGTTCAACTG 57.121 50.000 10.91 10.91 45.53 3.16
1901 2361 2.714250 TGAACCATACCCCAGTTCAACT 59.286 45.455 2.51 0.00 45.02 3.16
1902 2362 3.081804 CTGAACCATACCCCAGTTCAAC 58.918 50.000 6.31 0.00 46.63 3.18
1903 2363 2.983192 TCTGAACCATACCCCAGTTCAA 59.017 45.455 6.31 0.00 46.63 2.69
1904 2364 2.626785 TCTGAACCATACCCCAGTTCA 58.373 47.619 4.88 4.88 45.60 3.18
1905 2365 3.244770 TGTTCTGAACCATACCCCAGTTC 60.245 47.826 17.26 0.00 40.23 3.01
1906 2366 2.714250 TGTTCTGAACCATACCCCAGTT 59.286 45.455 17.26 0.00 0.00 3.16
1907 2367 2.344592 TGTTCTGAACCATACCCCAGT 58.655 47.619 17.26 0.00 0.00 4.00
1908 2368 3.433306 TTGTTCTGAACCATACCCCAG 57.567 47.619 17.26 0.00 0.00 4.45
1909 2369 3.139397 ACTTTGTTCTGAACCATACCCCA 59.861 43.478 17.26 0.00 0.00 4.96
1910 2370 3.756963 GACTTTGTTCTGAACCATACCCC 59.243 47.826 17.26 0.00 0.00 4.95
1911 2371 3.756963 GGACTTTGTTCTGAACCATACCC 59.243 47.826 17.26 9.63 0.00 3.69
1912 2372 4.652822 AGGACTTTGTTCTGAACCATACC 58.347 43.478 17.26 13.29 0.00 2.73
1913 2373 5.409826 CAGAGGACTTTGTTCTGAACCATAC 59.590 44.000 17.26 5.86 40.54 2.39
1914 2374 5.306937 TCAGAGGACTTTGTTCTGAACCATA 59.693 40.000 17.26 1.04 43.04 2.74
1915 2375 4.103153 TCAGAGGACTTTGTTCTGAACCAT 59.897 41.667 17.26 0.00 43.04 3.55
1916 2376 3.454447 TCAGAGGACTTTGTTCTGAACCA 59.546 43.478 17.26 4.09 43.04 3.67
1938 2398 2.296471 CGTGACTAGGGACAAGTTCTGT 59.704 50.000 0.00 0.00 42.61 3.41
1960 2422 3.613671 CGAGCAGTTCAGAGTTCAGTCAT 60.614 47.826 0.00 0.00 0.00 3.06
1978 2440 3.177920 CGTGCTGCAGAGTCGAGC 61.178 66.667 20.43 0.39 0.00 5.03
1982 2444 4.687215 TGGCCGTGCTGCAGAGTC 62.687 66.667 20.43 4.41 0.00 3.36
1998 2460 2.896801 GCCCGCGATGCCTATGTTG 61.897 63.158 8.23 0.00 0.00 3.33
2001 2463 2.281070 AAGCCCGCGATGCCTATG 60.281 61.111 8.23 0.00 0.00 2.23
2003 2465 3.323758 AACAAGCCCGCGATGCCTA 62.324 57.895 8.23 0.00 0.00 3.93
2004 2466 4.722700 AACAAGCCCGCGATGCCT 62.723 61.111 8.23 0.00 0.00 4.75
2005 2467 4.179579 GAACAAGCCCGCGATGCC 62.180 66.667 8.23 0.00 0.00 4.40
2006 2468 3.430862 TGAACAAGCCCGCGATGC 61.431 61.111 8.23 10.55 0.00 3.91
2007 2469 1.970917 GAGTGAACAAGCCCGCGATG 61.971 60.000 8.23 3.40 0.00 3.84
2008 2470 1.741770 GAGTGAACAAGCCCGCGAT 60.742 57.895 8.23 0.00 0.00 4.58
2010 2472 1.970917 GATGAGTGAACAAGCCCGCG 61.971 60.000 0.00 0.00 0.00 6.46
2011 2473 1.648467 GGATGAGTGAACAAGCCCGC 61.648 60.000 0.00 0.00 0.00 6.13
2012 2474 0.036010 AGGATGAGTGAACAAGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
2014 2476 2.746362 CAAGAGGATGAGTGAACAAGCC 59.254 50.000 0.00 0.00 0.00 4.35
2016 2478 4.635223 TGTCAAGAGGATGAGTGAACAAG 58.365 43.478 0.00 0.00 0.00 3.16
2017 2479 4.635223 CTGTCAAGAGGATGAGTGAACAA 58.365 43.478 0.00 0.00 0.00 2.83
2018 2480 3.555795 GCTGTCAAGAGGATGAGTGAACA 60.556 47.826 0.00 0.00 0.00 3.18
2019 2481 2.999355 GCTGTCAAGAGGATGAGTGAAC 59.001 50.000 0.00 0.00 0.00 3.18
2020 2482 2.027745 GGCTGTCAAGAGGATGAGTGAA 60.028 50.000 0.00 0.00 0.00 3.18
2022 2484 1.406614 GGGCTGTCAAGAGGATGAGTG 60.407 57.143 0.00 0.00 0.00 3.51
2023 2485 0.908198 GGGCTGTCAAGAGGATGAGT 59.092 55.000 0.00 0.00 0.00 3.41
2034 3304 0.257328 TGTTTTCCACTGGGCTGTCA 59.743 50.000 0.00 0.00 0.00 3.58
2035 3305 0.954452 CTGTTTTCCACTGGGCTGTC 59.046 55.000 0.00 0.00 0.00 3.51
2037 3307 0.954452 GTCTGTTTTCCACTGGGCTG 59.046 55.000 0.00 0.00 0.00 4.85
2038 3308 0.846693 AGTCTGTTTTCCACTGGGCT 59.153 50.000 0.00 0.00 0.00 5.19
2039 3309 0.954452 CAGTCTGTTTTCCACTGGGC 59.046 55.000 0.00 0.00 34.96 5.36
2040 3310 1.949525 CACAGTCTGTTTTCCACTGGG 59.050 52.381 1.67 0.00 41.66 4.45
2042 3312 4.396166 AGTTTCACAGTCTGTTTTCCACTG 59.604 41.667 1.67 0.00 42.80 3.66
2043 3313 4.589908 AGTTTCACAGTCTGTTTTCCACT 58.410 39.130 1.67 0.00 0.00 4.00
2045 3315 4.157656 CCAAGTTTCACAGTCTGTTTTCCA 59.842 41.667 1.67 0.00 0.00 3.53
2046 3316 4.398044 TCCAAGTTTCACAGTCTGTTTTCC 59.602 41.667 1.67 0.00 0.00 3.13
2048 3318 5.010282 AGTCCAAGTTTCACAGTCTGTTTT 58.990 37.500 1.67 0.00 0.00 2.43
2050 3320 4.222124 AGTCCAAGTTTCACAGTCTGTT 57.778 40.909 1.67 0.00 0.00 3.16
2051 3321 3.914426 AGTCCAAGTTTCACAGTCTGT 57.086 42.857 0.00 0.00 0.00 3.41
2053 3323 4.202264 CCACTAGTCCAAGTTTCACAGTCT 60.202 45.833 0.00 0.00 0.00 3.24
2055 3325 3.181454 CCCACTAGTCCAAGTTTCACAGT 60.181 47.826 0.00 0.00 0.00 3.55
2056 3326 3.403038 CCCACTAGTCCAAGTTTCACAG 58.597 50.000 0.00 0.00 0.00 3.66
2057 3327 2.486548 GCCCACTAGTCCAAGTTTCACA 60.487 50.000 0.00 0.00 0.00 3.58
2058 3328 2.152016 GCCCACTAGTCCAAGTTTCAC 58.848 52.381 0.00 0.00 0.00 3.18
2059 3329 1.073284 GGCCCACTAGTCCAAGTTTCA 59.927 52.381 0.00 0.00 0.00 2.69
2061 3331 1.446016 AGGCCCACTAGTCCAAGTTT 58.554 50.000 0.00 0.00 0.00 2.66
2063 3333 2.119495 CATAGGCCCACTAGTCCAAGT 58.881 52.381 0.00 0.00 34.56 3.16
2065 3335 2.263895 ACATAGGCCCACTAGTCCAA 57.736 50.000 0.00 0.00 34.56 3.53
2072 3980 6.070824 CCAAGAAAAATAAACATAGGCCCACT 60.071 38.462 0.00 0.00 0.00 4.00
2073 3981 6.106003 CCAAGAAAAATAAACATAGGCCCAC 58.894 40.000 0.00 0.00 0.00 4.61
2075 3983 5.670485 CCCAAGAAAAATAAACATAGGCCC 58.330 41.667 0.00 0.00 0.00 5.80
2098 4006 0.179174 CGTGGTTAGGCCGAAATTGC 60.179 55.000 0.00 0.00 41.21 3.56
2099 4007 0.450184 CCGTGGTTAGGCCGAAATTG 59.550 55.000 0.00 0.00 41.21 2.32
2100 4008 0.037160 ACCGTGGTTAGGCCGAAATT 59.963 50.000 0.00 0.00 41.21 1.82
2101 4009 0.675522 CACCGTGGTTAGGCCGAAAT 60.676 55.000 0.00 0.00 41.21 2.17
2102 4010 1.301874 CACCGTGGTTAGGCCGAAA 60.302 57.895 0.00 0.00 41.21 3.46
2103 4011 2.344500 CACCGTGGTTAGGCCGAA 59.656 61.111 0.00 0.00 41.21 4.30
2104 4012 4.382320 GCACCGTGGTTAGGCCGA 62.382 66.667 0.00 0.00 41.21 5.54
2106 4014 1.602605 AAAGCACCGTGGTTAGGCC 60.603 57.895 15.98 0.00 37.04 5.19
2108 4016 0.889186 AGCAAAGCACCGTGGTTAGG 60.889 55.000 15.98 12.27 37.04 2.69
2109 4017 0.517316 GAGCAAAGCACCGTGGTTAG 59.483 55.000 15.98 0.00 37.04 2.34
2111 4019 0.823356 ATGAGCAAAGCACCGTGGTT 60.823 50.000 10.18 10.18 40.14 3.67
2112 4020 0.823356 AATGAGCAAAGCACCGTGGT 60.823 50.000 0.00 0.00 0.00 4.16
2114 4022 1.806542 ACTAATGAGCAAAGCACCGTG 59.193 47.619 0.00 0.00 0.00 4.94
2115 4023 2.185004 ACTAATGAGCAAAGCACCGT 57.815 45.000 0.00 0.00 0.00 4.83
2137 4045 4.520078 CGACTAACAAGCGTTGCTAAAAA 58.480 39.130 0.00 0.00 38.25 1.94
2138 4046 3.059461 CCGACTAACAAGCGTTGCTAAAA 60.059 43.478 0.00 0.00 38.25 1.52
2141 4049 1.705256 CCGACTAACAAGCGTTGCTA 58.295 50.000 0.00 0.00 38.25 3.49
2142 4050 1.566018 GCCGACTAACAAGCGTTGCT 61.566 55.000 0.00 0.00 42.56 3.91
2143 4051 1.154469 GCCGACTAACAAGCGTTGC 60.154 57.895 0.00 0.00 36.52 4.17
2144 4052 0.949105 AGGCCGACTAACAAGCGTTG 60.949 55.000 0.00 0.00 36.52 4.10
2146 4054 0.822164 ATAGGCCGACTAACAAGCGT 59.178 50.000 0.00 0.00 34.79 5.07
2147 4055 1.209128 CATAGGCCGACTAACAAGCG 58.791 55.000 0.00 0.00 34.79 4.68
2148 4056 1.134491 ACCATAGGCCGACTAACAAGC 60.134 52.381 0.00 0.00 34.79 4.01
2149 4057 2.981859 ACCATAGGCCGACTAACAAG 57.018 50.000 0.00 0.00 34.79 3.16
2151 4059 3.706600 AAAACCATAGGCCGACTAACA 57.293 42.857 0.00 0.00 34.79 2.41
2169 4077 2.817258 ACATAGGCGCACTTGCTAAAAA 59.183 40.909 10.83 0.00 39.32 1.94
2170 4078 2.161410 CACATAGGCGCACTTGCTAAAA 59.839 45.455 10.83 0.00 39.32 1.52
2171 4079 1.737236 CACATAGGCGCACTTGCTAAA 59.263 47.619 10.83 0.00 39.32 1.85
2172 4080 1.368641 CACATAGGCGCACTTGCTAA 58.631 50.000 10.83 0.00 39.32 3.09
2173 4081 0.461870 CCACATAGGCGCACTTGCTA 60.462 55.000 10.83 0.39 39.32 3.49
2174 4082 1.746615 CCACATAGGCGCACTTGCT 60.747 57.895 10.83 0.00 39.32 3.91
2175 4083 0.742990 TACCACATAGGCGCACTTGC 60.743 55.000 10.83 0.00 43.14 4.01
2176 4084 1.006832 GTACCACATAGGCGCACTTG 58.993 55.000 10.83 5.35 43.14 3.16
2177 4085 0.611200 TGTACCACATAGGCGCACTT 59.389 50.000 10.83 0.00 43.14 3.16
2178 4086 0.108329 GTGTACCACATAGGCGCACT 60.108 55.000 10.83 6.69 43.14 4.40
2179 4087 0.108329 AGTGTACCACATAGGCGCAC 60.108 55.000 10.83 0.00 43.14 5.34
2180 4088 0.611200 AAGTGTACCACATAGGCGCA 59.389 50.000 10.83 0.00 43.14 6.09
2181 4089 1.134788 AGAAGTGTACCACATAGGCGC 60.135 52.381 0.00 0.00 43.14 6.53
2182 4090 2.961526 AGAAGTGTACCACATAGGCG 57.038 50.000 0.00 0.00 43.14 5.52
2183 4091 9.991906 TTAAATATAGAAGTGTACCACATAGGC 57.008 33.333 0.00 0.00 43.14 3.93
2259 4167 9.987272 TGAATATTCGACATATTCTCTTGATGT 57.013 29.630 24.55 0.00 40.10 3.06
2262 4170 9.987272 ACATGAATATTCGACATATTCTCTTGA 57.013 29.630 24.55 14.23 40.10 3.02
2374 4282 9.480053 CTTTTGACATACATGACCATTTTTCTT 57.520 29.630 0.00 0.00 0.00 2.52
2375 4283 8.859090 TCTTTTGACATACATGACCATTTTTCT 58.141 29.630 0.00 0.00 0.00 2.52
2376 4284 9.132521 CTCTTTTGACATACATGACCATTTTTC 57.867 33.333 0.00 0.00 0.00 2.29
2377 4285 8.641541 ACTCTTTTGACATACATGACCATTTTT 58.358 29.630 0.00 0.00 0.00 1.94
2378 4286 8.181904 ACTCTTTTGACATACATGACCATTTT 57.818 30.769 0.00 0.00 0.00 1.82
2379 4287 7.765695 ACTCTTTTGACATACATGACCATTT 57.234 32.000 0.00 0.00 0.00 2.32
2380 4288 7.231317 ACAACTCTTTTGACATACATGACCATT 59.769 33.333 0.00 0.00 0.00 3.16
2381 4289 6.716628 ACAACTCTTTTGACATACATGACCAT 59.283 34.615 0.00 0.00 0.00 3.55
2382 4290 6.061441 ACAACTCTTTTGACATACATGACCA 58.939 36.000 0.00 0.00 0.00 4.02
2383 4291 6.560253 ACAACTCTTTTGACATACATGACC 57.440 37.500 0.00 0.00 0.00 4.02
2384 4292 7.639039 TGAACAACTCTTTTGACATACATGAC 58.361 34.615 0.00 0.00 0.00 3.06
2385 4293 7.800155 TGAACAACTCTTTTGACATACATGA 57.200 32.000 0.00 0.00 0.00 3.07
2386 4294 9.546909 GTATGAACAACTCTTTTGACATACATG 57.453 33.333 20.19 0.00 39.54 3.21
2387 4295 9.283768 TGTATGAACAACTCTTTTGACATACAT 57.716 29.630 21.90 0.00 41.46 2.29
2388 4296 8.669946 TGTATGAACAACTCTTTTGACATACA 57.330 30.769 21.90 21.90 42.45 2.29
2391 4299 9.683069 GAAATGTATGAACAACTCTTTTGACAT 57.317 29.630 0.00 0.00 39.58 3.06
2392 4300 8.681806 TGAAATGTATGAACAACTCTTTTGACA 58.318 29.630 0.00 0.00 39.58 3.58
2393 4301 9.173939 CTGAAATGTATGAACAACTCTTTTGAC 57.826 33.333 0.00 0.00 39.58 3.18
2394 4302 9.119418 TCTGAAATGTATGAACAACTCTTTTGA 57.881 29.630 0.00 0.00 39.58 2.69
2395 4303 9.734620 TTCTGAAATGTATGAACAACTCTTTTG 57.265 29.630 0.00 0.00 39.58 2.44
2396 4304 9.736023 GTTCTGAAATGTATGAACAACTCTTTT 57.264 29.630 0.00 0.00 39.58 2.27
2397 4305 8.902806 TGTTCTGAAATGTATGAACAACTCTTT 58.097 29.630 0.00 0.00 43.55 2.52
2398 4306 8.450578 TGTTCTGAAATGTATGAACAACTCTT 57.549 30.769 0.00 0.00 43.55 2.85
2420 4328 9.492973 CCCTTTTCTTCAACATGAATATTTGTT 57.507 29.630 0.00 0.54 35.59 2.83
2421 4329 8.650490 ACCCTTTTCTTCAACATGAATATTTGT 58.350 29.630 0.00 0.00 35.59 2.83
2422 4330 9.492973 AACCCTTTTCTTCAACATGAATATTTG 57.507 29.630 0.00 0.00 35.59 2.32
2423 4331 9.710900 GAACCCTTTTCTTCAACATGAATATTT 57.289 29.630 0.00 0.00 35.59 1.40
2424 4332 8.869109 TGAACCCTTTTCTTCAACATGAATATT 58.131 29.630 0.00 0.00 35.59 1.28
2425 4333 8.421249 TGAACCCTTTTCTTCAACATGAATAT 57.579 30.769 0.00 0.00 35.59 1.28
2426 4334 7.831691 TGAACCCTTTTCTTCAACATGAATA 57.168 32.000 0.00 0.00 35.59 1.75
2427 4335 6.729690 TGAACCCTTTTCTTCAACATGAAT 57.270 33.333 0.00 0.00 35.59 2.57
2428 4336 6.379703 TCTTGAACCCTTTTCTTCAACATGAA 59.620 34.615 0.00 0.00 33.73 2.57
2429 4337 5.890985 TCTTGAACCCTTTTCTTCAACATGA 59.109 36.000 0.00 0.00 33.73 3.07
2430 4338 5.979517 GTCTTGAACCCTTTTCTTCAACATG 59.020 40.000 0.00 0.00 33.73 3.21
2431 4339 5.893824 AGTCTTGAACCCTTTTCTTCAACAT 59.106 36.000 0.00 0.00 33.73 2.71
2432 4340 5.261216 AGTCTTGAACCCTTTTCTTCAACA 58.739 37.500 0.00 0.00 33.73 3.33
2433 4341 5.836821 AGTCTTGAACCCTTTTCTTCAAC 57.163 39.130 0.00 0.00 33.73 3.18
2434 4342 5.949354 TGAAGTCTTGAACCCTTTTCTTCAA 59.051 36.000 0.00 0.00 37.61 2.69
2435 4343 5.505780 TGAAGTCTTGAACCCTTTTCTTCA 58.494 37.500 0.00 0.00 38.01 3.02
2436 4344 6.451064 TTGAAGTCTTGAACCCTTTTCTTC 57.549 37.500 0.00 0.00 0.00 2.87
2437 4345 6.850752 TTTGAAGTCTTGAACCCTTTTCTT 57.149 33.333 0.00 0.00 0.00 2.52
2438 4346 6.127338 CCTTTTGAAGTCTTGAACCCTTTTCT 60.127 38.462 0.00 0.00 0.00 2.52
2439 4347 6.042777 CCTTTTGAAGTCTTGAACCCTTTTC 58.957 40.000 0.00 0.00 0.00 2.29
2440 4348 5.719563 TCCTTTTGAAGTCTTGAACCCTTTT 59.280 36.000 0.00 0.00 0.00 2.27
2441 4349 5.269189 TCCTTTTGAAGTCTTGAACCCTTT 58.731 37.500 0.00 0.00 0.00 3.11
2442 4350 4.867086 TCCTTTTGAAGTCTTGAACCCTT 58.133 39.130 0.00 0.00 0.00 3.95
2443 4351 4.519906 TCCTTTTGAAGTCTTGAACCCT 57.480 40.909 0.00 0.00 0.00 4.34
2444 4352 5.188327 CTTCCTTTTGAAGTCTTGAACCC 57.812 43.478 0.00 0.00 44.59 4.11
2561 4469 9.914131 GCTTATTTCTTCACTTTTTAGGTCAAT 57.086 29.630 0.00 0.00 0.00 2.57
2562 4470 8.908903 TGCTTATTTCTTCACTTTTTAGGTCAA 58.091 29.630 0.00 0.00 0.00 3.18
2563 4471 8.458573 TGCTTATTTCTTCACTTTTTAGGTCA 57.541 30.769 0.00 0.00 0.00 4.02
2564 4472 9.744468 TTTGCTTATTTCTTCACTTTTTAGGTC 57.256 29.630 0.00 0.00 0.00 3.85
2667 4575 9.487790 CACTTACAATGGGTTTTGTTTTCATAT 57.512 29.630 0.00 0.00 40.25 1.78
2669 4577 7.560368 TCACTTACAATGGGTTTTGTTTTCAT 58.440 30.769 0.00 0.00 40.25 2.57
2671 4579 8.432110 AATCACTTACAATGGGTTTTGTTTTC 57.568 30.769 0.00 0.00 40.25 2.29
2673 4581 8.043710 TCAAATCACTTACAATGGGTTTTGTTT 58.956 29.630 0.00 0.00 40.25 2.83
2674 4582 7.560368 TCAAATCACTTACAATGGGTTTTGTT 58.440 30.769 0.00 0.00 40.25 2.83
2675 4583 7.118496 TCAAATCACTTACAATGGGTTTTGT 57.882 32.000 0.00 0.00 42.31 2.83
2706 4712 7.039923 GCAAATCCATAGAATGATCATGGTCTT 60.040 37.037 13.75 0.00 40.18 3.01
2709 4715 6.312529 AGCAAATCCATAGAATGATCATGGT 58.687 36.000 9.46 2.01 40.18 3.55
2720 4726 8.370940 CCAACTTAGAGATAGCAAATCCATAGA 58.629 37.037 0.00 0.00 0.00 1.98
2721 4727 8.153550 ACCAACTTAGAGATAGCAAATCCATAG 58.846 37.037 0.00 0.00 0.00 2.23
2722 4728 8.034313 ACCAACTTAGAGATAGCAAATCCATA 57.966 34.615 0.00 0.00 0.00 2.74
2723 4729 6.904626 ACCAACTTAGAGATAGCAAATCCAT 58.095 36.000 0.00 0.00 0.00 3.41
2725 4731 7.631717 AAACCAACTTAGAGATAGCAAATCC 57.368 36.000 0.00 0.00 0.00 3.01
2726 4732 8.730680 TGAAAACCAACTTAGAGATAGCAAATC 58.269 33.333 0.00 0.00 0.00 2.17
2727 4733 8.635765 TGAAAACCAACTTAGAGATAGCAAAT 57.364 30.769 0.00 0.00 0.00 2.32
2729 4735 9.162764 GTATGAAAACCAACTTAGAGATAGCAA 57.837 33.333 0.00 0.00 0.00 3.91
2731 4737 7.516943 GCGTATGAAAACCAACTTAGAGATAGC 60.517 40.741 0.00 0.00 0.00 2.97
2733 4739 7.324935 TGCGTATGAAAACCAACTTAGAGATA 58.675 34.615 0.00 0.00 0.00 1.98
2735 4741 5.543714 TGCGTATGAAAACCAACTTAGAGA 58.456 37.500 0.00 0.00 0.00 3.10
2736 4742 5.163854 CCTGCGTATGAAAACCAACTTAGAG 60.164 44.000 0.00 0.00 0.00 2.43
2737 4743 4.693566 CCTGCGTATGAAAACCAACTTAGA 59.306 41.667 0.00 0.00 0.00 2.10
2738 4744 4.671766 GCCTGCGTATGAAAACCAACTTAG 60.672 45.833 0.00 0.00 0.00 2.18
2739 4745 3.189702 GCCTGCGTATGAAAACCAACTTA 59.810 43.478 0.00 0.00 0.00 2.24
2742 4748 1.402325 GGCCTGCGTATGAAAACCAAC 60.402 52.381 0.00 0.00 0.00 3.77
2743 4749 0.885196 GGCCTGCGTATGAAAACCAA 59.115 50.000 0.00 0.00 0.00 3.67
2744 4750 0.250945 TGGCCTGCGTATGAAAACCA 60.251 50.000 3.32 0.00 0.00 3.67
2745 4751 0.451783 CTGGCCTGCGTATGAAAACC 59.548 55.000 3.32 0.00 0.00 3.27
2746 4752 0.451783 CCTGGCCTGCGTATGAAAAC 59.548 55.000 3.32 0.00 0.00 2.43
2747 4753 0.037590 ACCTGGCCTGCGTATGAAAA 59.962 50.000 3.32 0.00 0.00 2.29
2748 4754 0.392461 GACCTGGCCTGCGTATGAAA 60.392 55.000 3.32 0.00 0.00 2.69
2749 4755 1.220749 GACCTGGCCTGCGTATGAA 59.779 57.895 3.32 0.00 0.00 2.57
2751 4757 2.586079 CGACCTGGCCTGCGTATG 60.586 66.667 3.32 0.00 0.00 2.39
2752 4758 4.530857 GCGACCTGGCCTGCGTAT 62.531 66.667 3.32 0.00 0.00 3.06
2757 4763 0.464373 ATAATGTGCGACCTGGCCTG 60.464 55.000 3.32 2.54 0.00 4.85
2758 4764 1.128200 TATAATGTGCGACCTGGCCT 58.872 50.000 3.32 0.00 0.00 5.19
2759 4765 1.226746 GTATAATGTGCGACCTGGCC 58.773 55.000 0.00 0.00 0.00 5.36
2760 4766 1.948104 TGTATAATGTGCGACCTGGC 58.052 50.000 0.00 0.00 0.00 4.85
2761 4767 4.472691 CATTGTATAATGTGCGACCTGG 57.527 45.455 4.14 0.00 39.05 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.