Multiple sequence alignment - TraesCS3A01G034500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G034500 chr3A 100.000 2737 0 0 1 2737 19465930 19468666 0.000000e+00 5055.0
1 TraesCS3A01G034500 chr3A 90.488 799 61 2 1940 2737 19324707 19323923 0.000000e+00 1040.0
2 TraesCS3A01G034500 chr3A 91.558 770 34 12 1044 1800 19328869 19328118 0.000000e+00 1033.0
3 TraesCS3A01G034500 chr3A 90.476 420 38 2 1 419 700892793 700892375 1.110000e-153 553.0
4 TraesCS3A01G034500 chr3A 81.726 197 16 5 734 910 25925300 25925496 2.200000e-31 147.0
5 TraesCS3A01G034500 chr3A 75.521 192 38 9 716 902 19334762 19334575 4.860000e-13 86.1
6 TraesCS3A01G034500 chr3D 85.915 2137 145 57 622 2644 17392719 17390625 0.000000e+00 2135.0
7 TraesCS3A01G034500 chr3D 88.629 941 57 28 804 1723 17433990 17433079 0.000000e+00 1099.0
8 TraesCS3A01G034500 chr3D 86.504 941 68 30 909 1800 17592372 17591442 0.000000e+00 979.0
9 TraesCS3A01G034500 chr3D 86.504 941 68 30 909 1800 17602985 17603915 0.000000e+00 979.0
10 TraesCS3A01G034500 chr3D 88.698 814 48 20 928 1712 17414085 17413287 0.000000e+00 953.0
11 TraesCS3A01G034500 chr3D 85.185 891 89 29 935 1801 17556314 17557185 0.000000e+00 874.0
12 TraesCS3A01G034500 chr3D 85.185 891 89 27 935 1801 17581481 17580610 0.000000e+00 874.0
13 TraesCS3A01G034500 chr3D 84.562 434 21 16 416 810 17434451 17434025 3.310000e-104 388.0
14 TraesCS3A01G034500 chr3D 89.837 246 10 8 1844 2088 17406605 17406374 4.430000e-78 302.0
15 TraesCS3A01G034500 chr3D 80.894 246 10 7 416 624 17393786 17393541 2.820000e-35 159.0
16 TraesCS3A01G034500 chr3B 87.147 1595 96 58 552 2088 25122734 25121191 0.000000e+00 1709.0
17 TraesCS3A01G034500 chr3B 85.499 1462 100 47 704 2090 25057467 25056043 0.000000e+00 1423.0
18 TraesCS3A01G034500 chr3B 93.578 109 6 1 552 659 25057717 25057609 7.840000e-36 161.0
19 TraesCS3A01G034500 chrUn 84.799 1296 116 45 568 1803 37339331 37338057 0.000000e+00 1227.0
20 TraesCS3A01G034500 chrUn 84.799 1296 116 45 568 1803 237380463 237379189 0.000000e+00 1227.0
21 TraesCS3A01G034500 chrUn 85.072 1045 92 38 810 1803 38635710 38634679 0.000000e+00 1007.0
22 TraesCS3A01G034500 chrUn 86.830 653 41 23 810 1417 410968558 410967906 0.000000e+00 688.0
23 TraesCS3A01G034500 chrUn 86.677 653 42 23 810 1417 329700324 329700976 0.000000e+00 682.0
24 TraesCS3A01G034500 chrUn 82.768 383 49 15 1426 1803 37961970 37961600 2.630000e-85 326.0
25 TraesCS3A01G034500 chrUn 82.768 383 49 15 1426 1803 361992636 361992266 2.630000e-85 326.0
26 TraesCS3A01G034500 chrUn 89.177 231 17 3 561 790 268149079 268149302 5.770000e-72 281.0
27 TraesCS3A01G034500 chrUn 89.177 231 17 3 561 790 434584384 434584161 5.770000e-72 281.0
28 TraesCS3A01G034500 chrUn 89.177 231 17 3 561 790 444058705 444058482 5.770000e-72 281.0
29 TraesCS3A01G034500 chrUn 88.745 231 18 3 561 790 38637322 38637099 2.680000e-70 276.0
30 TraesCS3A01G034500 chrUn 88.745 231 18 3 561 790 263449837 263450060 2.680000e-70 276.0
31 TraesCS3A01G034500 chrUn 88.312 231 19 3 561 790 329698710 329698933 1.250000e-68 270.0
32 TraesCS3A01G034500 chrUn 93.151 73 5 0 816 888 291906658 291906586 1.040000e-19 108.0
33 TraesCS3A01G034500 chr5B 85.714 917 75 26 935 1805 426652145 426651239 0.000000e+00 917.0
34 TraesCS3A01G034500 chr5B 87.891 256 27 4 2151 2403 105688190 105688444 5.730000e-77 298.0
35 TraesCS3A01G034500 chr5D 90.000 670 52 6 1105 1770 361342255 361341597 0.000000e+00 852.0
36 TraesCS3A01G034500 chr5D 88.000 250 28 2 2151 2398 538762370 538762619 7.410000e-76 294.0
37 TraesCS3A01G034500 chr5D 87.109 256 31 2 2151 2404 279292871 279293126 3.450000e-74 289.0
38 TraesCS3A01G034500 chr1A 93.431 411 27 0 1 411 15696131 15696541 6.480000e-171 610.0
39 TraesCS3A01G034500 chr7A 93.187 411 27 1 1 411 626929490 626929081 1.080000e-168 603.0
40 TraesCS3A01G034500 chr2A 92.788 416 28 2 1 415 4803636 4803222 3.900000e-168 601.0
41 TraesCS3A01G034500 chr2A 90.865 416 35 3 1 415 8565877 8565464 3.080000e-154 555.0
42 TraesCS3A01G034500 chr2A 87.451 255 29 3 2151 2403 752550852 752550599 9.590000e-75 291.0
43 TraesCS3A01G034500 chr5A 92.701 411 30 0 1 411 26465338 26465748 6.530000e-166 593.0
44 TraesCS3A01G034500 chr5A 90.647 417 37 2 1 416 115617509 115617924 1.110000e-153 553.0
45 TraesCS3A01G034500 chr5A 87.549 257 29 3 2151 2406 427372580 427372326 7.410000e-76 294.0
46 TraesCS3A01G034500 chr4A 92.402 408 31 0 1 408 562489721 562490128 1.410000e-162 582.0
47 TraesCS3A01G034500 chr4A 90.625 416 35 4 1 415 600979878 600979466 1.430000e-152 549.0
48 TraesCS3A01G034500 chr4A 87.795 254 29 2 2152 2403 743449866 743449613 2.060000e-76 296.0
49 TraesCS3A01G034500 chr1B 90.698 258 22 2 2148 2403 442201900 442201643 2.610000e-90 342.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G034500 chr3A 19465930 19468666 2736 False 5055.0 5055 100.0000 1 2737 1 chr3A.!!$F1 2736
1 TraesCS3A01G034500 chr3A 19323923 19328869 4946 True 1036.5 1040 91.0230 1044 2737 2 chr3A.!!$R3 1693
2 TraesCS3A01G034500 chr3D 17390625 17393786 3161 True 1147.0 2135 83.4045 416 2644 2 chr3D.!!$R5 2228
3 TraesCS3A01G034500 chr3D 17591442 17592372 930 True 979.0 979 86.5040 909 1800 1 chr3D.!!$R4 891
4 TraesCS3A01G034500 chr3D 17602985 17603915 930 False 979.0 979 86.5040 909 1800 1 chr3D.!!$F2 891
5 TraesCS3A01G034500 chr3D 17413287 17414085 798 True 953.0 953 88.6980 928 1712 1 chr3D.!!$R2 784
6 TraesCS3A01G034500 chr3D 17556314 17557185 871 False 874.0 874 85.1850 935 1801 1 chr3D.!!$F1 866
7 TraesCS3A01G034500 chr3D 17580610 17581481 871 True 874.0 874 85.1850 935 1801 1 chr3D.!!$R3 866
8 TraesCS3A01G034500 chr3D 17433079 17434451 1372 True 743.5 1099 86.5955 416 1723 2 chr3D.!!$R6 1307
9 TraesCS3A01G034500 chr3B 25121191 25122734 1543 True 1709.0 1709 87.1470 552 2088 1 chr3B.!!$R1 1536
10 TraesCS3A01G034500 chr3B 25056043 25057717 1674 True 792.0 1423 89.5385 552 2090 2 chr3B.!!$R2 1538
11 TraesCS3A01G034500 chrUn 37338057 37339331 1274 True 1227.0 1227 84.7990 568 1803 1 chrUn.!!$R1 1235
12 TraesCS3A01G034500 chrUn 237379189 237380463 1274 True 1227.0 1227 84.7990 568 1803 1 chrUn.!!$R3 1235
13 TraesCS3A01G034500 chrUn 410967906 410968558 652 True 688.0 688 86.8300 810 1417 1 chrUn.!!$R6 607
14 TraesCS3A01G034500 chrUn 38634679 38637322 2643 True 641.5 1007 86.9085 561 1803 2 chrUn.!!$R9 1242
15 TraesCS3A01G034500 chrUn 329698710 329700976 2266 False 476.0 682 87.4945 561 1417 2 chrUn.!!$F3 856
16 TraesCS3A01G034500 chr5B 426651239 426652145 906 True 917.0 917 85.7140 935 1805 1 chr5B.!!$R1 870
17 TraesCS3A01G034500 chr5D 361341597 361342255 658 True 852.0 852 90.0000 1105 1770 1 chr5D.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.038599 TGTGGCATCTGTTCATGGCT 59.961 50.0 8.29 0.0 46.93 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 4702 0.530744 TGATCAGTGTAGACCCACGC 59.469 55.0 0.0 0.0 40.33 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.754382 ACAGAATATCATGTATCCAATTTTTGC 57.246 29.630 0.00 0.00 0.00 3.68
41 42 9.752961 CAGAATATCATGTATCCAATTTTTGCA 57.247 29.630 0.00 0.00 0.00 4.08
42 43 9.976511 AGAATATCATGTATCCAATTTTTGCAG 57.023 29.630 0.00 0.00 0.00 4.41
43 44 9.199982 GAATATCATGTATCCAATTTTTGCAGG 57.800 33.333 0.00 0.00 0.00 4.85
44 45 5.999205 TCATGTATCCAATTTTTGCAGGT 57.001 34.783 0.00 0.00 0.00 4.00
45 46 6.357579 TCATGTATCCAATTTTTGCAGGTT 57.642 33.333 0.00 0.00 0.00 3.50
46 47 7.473735 TCATGTATCCAATTTTTGCAGGTTA 57.526 32.000 0.00 0.00 0.00 2.85
47 48 8.076910 TCATGTATCCAATTTTTGCAGGTTAT 57.923 30.769 0.00 0.00 0.00 1.89
48 49 9.194972 TCATGTATCCAATTTTTGCAGGTTATA 57.805 29.630 0.00 0.00 0.00 0.98
49 50 9.985730 CATGTATCCAATTTTTGCAGGTTATAT 57.014 29.630 0.00 0.00 0.00 0.86
52 53 9.476202 GTATCCAATTTTTGCAGGTTATATTCC 57.524 33.333 0.00 0.00 0.00 3.01
53 54 6.568869 TCCAATTTTTGCAGGTTATATTCCG 58.431 36.000 0.00 0.00 0.00 4.30
54 55 6.153680 TCCAATTTTTGCAGGTTATATTCCGT 59.846 34.615 0.00 0.00 0.00 4.69
55 56 7.339721 TCCAATTTTTGCAGGTTATATTCCGTA 59.660 33.333 0.00 0.00 0.00 4.02
56 57 7.434013 CCAATTTTTGCAGGTTATATTCCGTAC 59.566 37.037 0.00 0.00 0.00 3.67
57 58 7.875327 ATTTTTGCAGGTTATATTCCGTACT 57.125 32.000 0.00 0.00 0.00 2.73
58 59 8.967664 ATTTTTGCAGGTTATATTCCGTACTA 57.032 30.769 0.00 0.00 0.00 1.82
59 60 7.775397 TTTTGCAGGTTATATTCCGTACTAC 57.225 36.000 0.00 0.00 0.00 2.73
60 61 5.112220 TGCAGGTTATATTCCGTACTACG 57.888 43.478 1.32 1.32 42.11 3.51
61 62 4.821260 TGCAGGTTATATTCCGTACTACGA 59.179 41.667 10.27 0.00 46.05 3.43
62 63 5.149977 GCAGGTTATATTCCGTACTACGAC 58.850 45.833 10.27 0.00 46.05 4.34
63 64 5.277974 GCAGGTTATATTCCGTACTACGACA 60.278 44.000 10.27 0.00 46.05 4.35
64 65 6.569226 GCAGGTTATATTCCGTACTACGACAT 60.569 42.308 10.27 4.32 46.05 3.06
65 66 7.365741 CAGGTTATATTCCGTACTACGACATT 58.634 38.462 10.27 0.00 46.05 2.71
66 67 7.325338 CAGGTTATATTCCGTACTACGACATTG 59.675 40.741 10.27 0.00 46.05 2.82
67 68 7.229306 AGGTTATATTCCGTACTACGACATTGA 59.771 37.037 10.27 0.00 46.05 2.57
68 69 8.025445 GGTTATATTCCGTACTACGACATTGAT 58.975 37.037 10.27 0.00 46.05 2.57
69 70 9.059485 GTTATATTCCGTACTACGACATTGATC 57.941 37.037 10.27 0.00 46.05 2.92
70 71 3.976793 TCCGTACTACGACATTGATCC 57.023 47.619 10.27 0.00 46.05 3.36
71 72 2.288729 TCCGTACTACGACATTGATCCG 59.711 50.000 10.27 0.00 46.05 4.18
72 73 2.032550 CCGTACTACGACATTGATCCGT 59.967 50.000 10.27 0.00 46.05 4.69
73 74 3.488047 CCGTACTACGACATTGATCCGTT 60.488 47.826 10.27 0.00 46.05 4.44
74 75 3.722780 CGTACTACGACATTGATCCGTTC 59.277 47.826 2.17 0.00 46.05 3.95
75 76 2.793933 ACTACGACATTGATCCGTTCG 58.206 47.619 0.00 1.15 37.69 3.95
76 77 2.163010 ACTACGACATTGATCCGTTCGT 59.837 45.455 11.81 11.81 37.69 3.85
77 78 1.346365 ACGACATTGATCCGTTCGTG 58.654 50.000 7.66 0.00 32.03 4.35
78 79 0.645355 CGACATTGATCCGTTCGTGG 59.355 55.000 0.00 0.00 0.00 4.94
79 80 1.722011 GACATTGATCCGTTCGTGGT 58.278 50.000 0.00 0.00 0.00 4.16
80 81 1.659098 GACATTGATCCGTTCGTGGTC 59.341 52.381 0.00 0.00 0.00 4.02
81 82 0.645355 CATTGATCCGTTCGTGGTCG 59.355 55.000 0.00 0.00 38.55 4.79
82 83 1.082117 ATTGATCCGTTCGTGGTCGC 61.082 55.000 0.00 0.00 36.96 5.19
83 84 2.149803 TTGATCCGTTCGTGGTCGCT 62.150 55.000 0.00 0.00 36.96 4.93
84 85 1.307355 TGATCCGTTCGTGGTCGCTA 61.307 55.000 0.00 0.00 36.96 4.26
85 86 0.864797 GATCCGTTCGTGGTCGCTAC 60.865 60.000 0.00 0.00 36.96 3.58
86 87 1.310933 ATCCGTTCGTGGTCGCTACT 61.311 55.000 0.00 0.00 36.96 2.57
87 88 1.513586 CCGTTCGTGGTCGCTACTC 60.514 63.158 0.00 0.00 36.96 2.59
88 89 1.208358 CGTTCGTGGTCGCTACTCA 59.792 57.895 0.00 0.00 36.96 3.41
89 90 1.063951 CGTTCGTGGTCGCTACTCAC 61.064 60.000 0.00 0.00 36.96 3.51
90 91 0.731855 GTTCGTGGTCGCTACTCACC 60.732 60.000 5.00 0.00 36.96 4.02
91 92 1.870055 TTCGTGGTCGCTACTCACCC 61.870 60.000 5.00 0.00 36.96 4.61
92 93 2.577593 GTGGTCGCTACTCACCCC 59.422 66.667 0.00 0.00 0.00 4.95
93 94 3.066190 TGGTCGCTACTCACCCCG 61.066 66.667 0.00 0.00 0.00 5.73
94 95 2.753043 GGTCGCTACTCACCCCGA 60.753 66.667 0.00 0.00 0.00 5.14
95 96 2.488820 GTCGCTACTCACCCCGAC 59.511 66.667 0.00 0.00 42.39 4.79
96 97 3.129502 TCGCTACTCACCCCGACG 61.130 66.667 0.00 0.00 0.00 5.12
97 98 4.189188 CGCTACTCACCCCGACGG 62.189 72.222 6.99 6.99 37.81 4.79
98 99 2.753043 GCTACTCACCCCGACGGA 60.753 66.667 17.49 0.00 34.64 4.69
99 100 2.772691 GCTACTCACCCCGACGGAG 61.773 68.421 17.49 4.05 34.64 4.63
100 101 2.044650 TACTCACCCCGACGGAGG 60.045 66.667 17.49 17.18 34.64 4.30
108 109 4.148825 CCGACGGAGGCCAAGGAG 62.149 72.222 8.64 0.00 0.00 3.69
109 110 4.821589 CGACGGAGGCCAAGGAGC 62.822 72.222 5.01 0.00 0.00 4.70
110 111 3.706373 GACGGAGGCCAAGGAGCA 61.706 66.667 5.01 0.00 0.00 4.26
111 112 3.011517 ACGGAGGCCAAGGAGCAT 61.012 61.111 5.01 0.00 0.00 3.79
112 113 2.273449 CGGAGGCCAAGGAGCATT 59.727 61.111 5.01 0.00 0.00 3.56
113 114 1.379044 CGGAGGCCAAGGAGCATTT 60.379 57.895 5.01 0.00 0.00 2.32
114 115 1.660560 CGGAGGCCAAGGAGCATTTG 61.661 60.000 5.01 0.00 0.00 2.32
115 116 1.325476 GGAGGCCAAGGAGCATTTGG 61.325 60.000 5.01 8.93 46.28 3.28
116 117 0.613012 GAGGCCAAGGAGCATTTGGT 60.613 55.000 5.01 0.00 45.48 3.67
117 118 0.178924 AGGCCAAGGAGCATTTGGTT 60.179 50.000 5.01 2.89 45.48 3.67
118 119 1.077005 AGGCCAAGGAGCATTTGGTTA 59.923 47.619 5.01 0.00 45.48 2.85
119 120 1.204704 GGCCAAGGAGCATTTGGTTAC 59.795 52.381 0.00 3.86 45.48 2.50
120 121 2.171003 GCCAAGGAGCATTTGGTTACT 58.829 47.619 13.30 0.00 45.48 2.24
121 122 2.094545 GCCAAGGAGCATTTGGTTACTG 60.095 50.000 13.30 0.00 45.48 2.74
122 123 2.493278 CCAAGGAGCATTTGGTTACTGG 59.507 50.000 5.90 0.00 40.15 4.00
123 124 3.420893 CAAGGAGCATTTGGTTACTGGA 58.579 45.455 0.00 0.00 0.00 3.86
124 125 4.019174 CAAGGAGCATTTGGTTACTGGAT 58.981 43.478 0.00 0.00 0.00 3.41
125 126 3.891049 AGGAGCATTTGGTTACTGGATC 58.109 45.455 0.00 0.00 0.00 3.36
126 127 3.525199 AGGAGCATTTGGTTACTGGATCT 59.475 43.478 0.00 0.00 0.00 2.75
127 128 4.018050 AGGAGCATTTGGTTACTGGATCTT 60.018 41.667 0.00 0.00 0.00 2.40
128 129 4.706962 GGAGCATTTGGTTACTGGATCTTT 59.293 41.667 0.00 0.00 0.00 2.52
129 130 5.163612 GGAGCATTTGGTTACTGGATCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
130 131 4.706962 AGCATTTGGTTACTGGATCTTTCC 59.293 41.667 0.00 0.00 42.94 3.13
131 132 4.438744 GCATTTGGTTACTGGATCTTTCCG 60.439 45.833 0.00 0.00 45.89 4.30
132 133 2.396590 TGGTTACTGGATCTTTCCGC 57.603 50.000 0.00 0.00 45.89 5.54
133 134 1.906574 TGGTTACTGGATCTTTCCGCT 59.093 47.619 0.00 0.00 45.89 5.52
134 135 2.280628 GGTTACTGGATCTTTCCGCTG 58.719 52.381 0.00 0.00 45.89 5.18
135 136 2.280628 GTTACTGGATCTTTCCGCTGG 58.719 52.381 0.00 0.00 45.89 4.85
136 137 0.830648 TACTGGATCTTTCCGCTGGG 59.169 55.000 0.00 0.00 45.89 4.45
137 138 0.909610 ACTGGATCTTTCCGCTGGGA 60.910 55.000 0.00 0.00 45.89 4.37
138 139 0.179062 CTGGATCTTTCCGCTGGGAG 60.179 60.000 0.00 0.00 45.89 4.30
139 140 0.617535 TGGATCTTTCCGCTGGGAGA 60.618 55.000 0.00 0.83 45.89 3.71
140 141 0.761802 GGATCTTTCCGCTGGGAGAT 59.238 55.000 11.19 11.19 44.98 2.75
141 142 1.542108 GGATCTTTCCGCTGGGAGATG 60.542 57.143 14.13 0.00 44.98 2.90
142 143 0.471617 ATCTTTCCGCTGGGAGATGG 59.528 55.000 10.84 0.00 44.98 3.51
143 144 0.909610 TCTTTCCGCTGGGAGATGGT 60.910 55.000 0.00 0.00 44.98 3.55
144 145 0.830648 CTTTCCGCTGGGAGATGGTA 59.169 55.000 0.00 0.00 44.98 3.25
145 146 0.830648 TTTCCGCTGGGAGATGGTAG 59.169 55.000 0.00 0.00 44.98 3.18
146 147 0.325296 TTCCGCTGGGAGATGGTAGT 60.325 55.000 0.00 0.00 44.98 2.73
147 148 0.325296 TCCGCTGGGAGATGGTAGTT 60.325 55.000 0.00 0.00 37.43 2.24
148 149 0.105039 CCGCTGGGAGATGGTAGTTC 59.895 60.000 0.00 0.00 34.06 3.01
149 150 0.249073 CGCTGGGAGATGGTAGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
150 151 0.105039 GCTGGGAGATGGTAGTTCGG 59.895 60.000 0.00 0.00 0.00 4.30
151 152 1.776662 CTGGGAGATGGTAGTTCGGA 58.223 55.000 0.00 0.00 0.00 4.55
152 153 2.108168 CTGGGAGATGGTAGTTCGGAA 58.892 52.381 0.00 0.00 0.00 4.30
153 154 2.700897 CTGGGAGATGGTAGTTCGGAAT 59.299 50.000 0.00 0.00 0.00 3.01
154 155 3.895656 CTGGGAGATGGTAGTTCGGAATA 59.104 47.826 0.00 0.00 0.00 1.75
155 156 4.489737 TGGGAGATGGTAGTTCGGAATAT 58.510 43.478 0.00 0.00 0.00 1.28
156 157 4.527038 TGGGAGATGGTAGTTCGGAATATC 59.473 45.833 0.00 0.00 0.00 1.63
157 158 4.773149 GGGAGATGGTAGTTCGGAATATCT 59.227 45.833 0.00 0.00 0.00 1.98
158 159 5.246429 GGGAGATGGTAGTTCGGAATATCTT 59.754 44.000 0.00 0.00 0.00 2.40
159 160 6.391537 GGAGATGGTAGTTCGGAATATCTTC 58.608 44.000 0.00 0.00 0.00 2.87
160 161 6.015350 GGAGATGGTAGTTCGGAATATCTTCA 60.015 42.308 0.83 0.00 32.70 3.02
161 162 7.361457 AGATGGTAGTTCGGAATATCTTCAA 57.639 36.000 0.83 0.00 32.70 2.69
162 163 7.210873 AGATGGTAGTTCGGAATATCTTCAAC 58.789 38.462 0.83 0.00 32.70 3.18
163 164 5.667466 TGGTAGTTCGGAATATCTTCAACC 58.333 41.667 0.00 0.00 32.70 3.77
164 165 4.743644 GGTAGTTCGGAATATCTTCAACCG 59.256 45.833 0.00 0.00 44.09 4.44
165 166 3.793559 AGTTCGGAATATCTTCAACCGG 58.206 45.455 0.00 0.00 43.14 5.28
166 167 3.197116 AGTTCGGAATATCTTCAACCGGT 59.803 43.478 0.00 0.00 43.14 5.28
167 168 3.899052 TCGGAATATCTTCAACCGGTT 57.101 42.857 15.86 15.86 43.14 4.44
168 169 4.210724 TCGGAATATCTTCAACCGGTTT 57.789 40.909 19.55 5.23 43.14 3.27
169 170 3.936453 TCGGAATATCTTCAACCGGTTTG 59.064 43.478 19.55 13.53 43.14 2.93
170 171 3.064820 CGGAATATCTTCAACCGGTTTGG 59.935 47.826 19.55 7.84 39.92 3.28
171 172 4.266714 GGAATATCTTCAACCGGTTTGGA 58.733 43.478 19.55 15.86 35.52 3.53
172 173 4.887655 GGAATATCTTCAACCGGTTTGGAT 59.112 41.667 19.55 21.16 35.52 3.41
173 174 5.221048 GGAATATCTTCAACCGGTTTGGATG 60.221 44.000 19.55 14.79 41.73 3.51
174 175 2.940994 TCTTCAACCGGTTTGGATGA 57.059 45.000 19.55 16.82 46.81 2.92
176 177 2.921374 TCAACCGGTTTGGATGACG 58.079 52.632 19.55 3.62 43.94 4.35
177 178 0.604243 TCAACCGGTTTGGATGACGG 60.604 55.000 19.55 2.80 43.94 4.79
179 180 3.884900 CCGGTTTGGATGACGGTC 58.115 61.111 0.00 0.00 42.00 4.79
180 181 1.004320 CCGGTTTGGATGACGGTCA 60.004 57.895 14.01 14.01 42.00 4.02
181 182 0.392461 CCGGTTTGGATGACGGTCAT 60.392 55.000 22.84 22.84 42.00 3.06
182 183 0.726827 CGGTTTGGATGACGGTCATG 59.273 55.000 27.11 8.03 37.20 3.07
183 184 1.821216 GGTTTGGATGACGGTCATGT 58.179 50.000 27.11 6.13 37.20 3.21
184 185 2.675603 CGGTTTGGATGACGGTCATGTA 60.676 50.000 27.11 13.12 37.20 2.29
185 186 3.340034 GGTTTGGATGACGGTCATGTAA 58.660 45.455 27.11 17.74 37.20 2.41
186 187 3.945285 GGTTTGGATGACGGTCATGTAAT 59.055 43.478 27.11 4.51 37.20 1.89
187 188 5.120399 GGTTTGGATGACGGTCATGTAATA 58.880 41.667 27.11 6.86 37.20 0.98
188 189 5.236478 GGTTTGGATGACGGTCATGTAATAG 59.764 44.000 27.11 0.00 37.20 1.73
189 190 4.600692 TGGATGACGGTCATGTAATAGG 57.399 45.455 27.11 0.00 37.20 2.57
190 191 4.219919 TGGATGACGGTCATGTAATAGGA 58.780 43.478 27.11 0.00 37.20 2.94
191 192 4.838423 TGGATGACGGTCATGTAATAGGAT 59.162 41.667 27.11 0.56 37.20 3.24
192 193 6.014012 TGGATGACGGTCATGTAATAGGATA 58.986 40.000 27.11 0.00 37.20 2.59
193 194 6.152831 TGGATGACGGTCATGTAATAGGATAG 59.847 42.308 27.11 0.00 37.20 2.08
194 195 6.377429 GGATGACGGTCATGTAATAGGATAGA 59.623 42.308 27.11 0.00 37.20 1.98
195 196 6.570672 TGACGGTCATGTAATAGGATAGAC 57.429 41.667 6.76 0.00 0.00 2.59
196 197 6.066032 TGACGGTCATGTAATAGGATAGACA 58.934 40.000 6.76 0.00 0.00 3.41
197 198 6.719829 TGACGGTCATGTAATAGGATAGACAT 59.280 38.462 6.76 0.00 32.95 3.06
198 199 7.232737 TGACGGTCATGTAATAGGATAGACATT 59.767 37.037 6.76 0.00 31.03 2.71
199 200 7.963532 ACGGTCATGTAATAGGATAGACATTT 58.036 34.615 0.00 0.00 31.03 2.32
200 201 9.085645 ACGGTCATGTAATAGGATAGACATTTA 57.914 33.333 0.00 0.00 31.03 1.40
201 202 9.574458 CGGTCATGTAATAGGATAGACATTTAG 57.426 37.037 0.00 0.00 31.03 1.85
222 223 9.610705 ATTTAGTTTACTTACCTAGCTTTAGCC 57.389 33.333 0.00 0.00 43.38 3.93
223 224 6.616237 AGTTTACTTACCTAGCTTTAGCCA 57.384 37.500 0.00 0.00 43.38 4.75
224 225 6.641474 AGTTTACTTACCTAGCTTTAGCCAG 58.359 40.000 0.00 0.00 43.38 4.85
225 226 3.545366 ACTTACCTAGCTTTAGCCAGC 57.455 47.619 0.00 0.00 43.38 4.85
226 227 2.170817 ACTTACCTAGCTTTAGCCAGCC 59.829 50.000 0.00 0.00 41.12 4.85
227 228 0.750850 TACCTAGCTTTAGCCAGCCG 59.249 55.000 0.00 0.00 41.12 5.52
228 229 1.227674 CCTAGCTTTAGCCAGCCGG 60.228 63.158 0.00 0.00 41.12 6.13
229 230 1.522569 CTAGCTTTAGCCAGCCGGT 59.477 57.895 1.90 0.00 41.12 5.28
230 231 0.107654 CTAGCTTTAGCCAGCCGGTT 60.108 55.000 1.90 0.00 41.12 4.44
231 232 0.392461 TAGCTTTAGCCAGCCGGTTG 60.392 55.000 11.98 11.98 41.12 3.77
232 233 1.971695 GCTTTAGCCAGCCGGTTGT 60.972 57.895 17.69 1.85 33.21 3.32
233 234 1.875963 CTTTAGCCAGCCGGTTGTG 59.124 57.895 17.69 9.73 33.28 3.33
234 235 1.586154 CTTTAGCCAGCCGGTTGTGG 61.586 60.000 17.69 15.43 36.85 4.17
242 243 4.079446 CCGGTTGTGGCATCTGTT 57.921 55.556 0.00 0.00 0.00 3.16
243 244 1.875963 CCGGTTGTGGCATCTGTTC 59.124 57.895 0.00 0.00 0.00 3.18
244 245 0.888736 CCGGTTGTGGCATCTGTTCA 60.889 55.000 0.00 0.00 0.00 3.18
245 246 1.167851 CGGTTGTGGCATCTGTTCAT 58.832 50.000 0.00 0.00 0.00 2.57
246 247 1.135603 CGGTTGTGGCATCTGTTCATG 60.136 52.381 0.00 0.00 0.00 3.07
247 248 1.203052 GGTTGTGGCATCTGTTCATGG 59.797 52.381 0.00 0.00 0.00 3.66
248 249 0.889994 TTGTGGCATCTGTTCATGGC 59.110 50.000 0.00 0.23 46.98 4.40
249 250 0.038599 TGTGGCATCTGTTCATGGCT 59.961 50.000 8.29 0.00 46.93 4.75
250 251 1.281577 TGTGGCATCTGTTCATGGCTA 59.718 47.619 8.29 0.00 46.93 3.93
251 252 1.945394 GTGGCATCTGTTCATGGCTAG 59.055 52.381 8.29 0.00 46.93 3.42
252 253 1.561076 TGGCATCTGTTCATGGCTAGT 59.439 47.619 8.29 0.00 46.93 2.57
253 254 2.025981 TGGCATCTGTTCATGGCTAGTT 60.026 45.455 8.29 0.00 46.93 2.24
254 255 2.357009 GGCATCTGTTCATGGCTAGTTG 59.643 50.000 0.00 0.00 44.17 3.16
255 256 2.357009 GCATCTGTTCATGGCTAGTTGG 59.643 50.000 0.00 0.00 0.00 3.77
256 257 3.614092 CATCTGTTCATGGCTAGTTGGT 58.386 45.455 0.00 0.00 0.00 3.67
257 258 3.057969 TCTGTTCATGGCTAGTTGGTG 57.942 47.619 0.00 0.00 0.00 4.17
258 259 2.371841 TCTGTTCATGGCTAGTTGGTGT 59.628 45.455 0.00 0.00 0.00 4.16
259 260 3.149196 CTGTTCATGGCTAGTTGGTGTT 58.851 45.455 0.00 0.00 0.00 3.32
260 261 3.561143 TGTTCATGGCTAGTTGGTGTTT 58.439 40.909 0.00 0.00 0.00 2.83
261 262 3.568007 TGTTCATGGCTAGTTGGTGTTTC 59.432 43.478 0.00 0.00 0.00 2.78
262 263 3.788227 TCATGGCTAGTTGGTGTTTCT 57.212 42.857 0.00 0.00 0.00 2.52
263 264 4.901197 TCATGGCTAGTTGGTGTTTCTA 57.099 40.909 0.00 0.00 0.00 2.10
264 265 4.832248 TCATGGCTAGTTGGTGTTTCTAG 58.168 43.478 0.00 0.00 35.60 2.43
267 268 3.053831 GCTAGTTGGTGTTTCTAGCCA 57.946 47.619 10.99 0.00 46.04 4.75
268 269 2.742589 GCTAGTTGGTGTTTCTAGCCAC 59.257 50.000 10.99 0.00 46.04 5.01
269 270 3.557264 GCTAGTTGGTGTTTCTAGCCACT 60.557 47.826 10.99 0.00 46.04 4.00
270 271 3.577805 AGTTGGTGTTTCTAGCCACTT 57.422 42.857 6.88 0.00 31.19 3.16
271 272 3.898482 AGTTGGTGTTTCTAGCCACTTT 58.102 40.909 6.88 0.00 31.19 2.66
272 273 4.278310 AGTTGGTGTTTCTAGCCACTTTT 58.722 39.130 6.88 0.00 31.19 2.27
273 274 4.709886 AGTTGGTGTTTCTAGCCACTTTTT 59.290 37.500 6.88 0.00 31.19 1.94
274 275 5.889289 AGTTGGTGTTTCTAGCCACTTTTTA 59.111 36.000 6.88 0.00 31.19 1.52
275 276 6.039382 AGTTGGTGTTTCTAGCCACTTTTTAG 59.961 38.462 6.88 0.00 31.19 1.85
276 277 5.442391 TGGTGTTTCTAGCCACTTTTTAGT 58.558 37.500 6.88 0.00 0.00 2.24
277 278 5.889289 TGGTGTTTCTAGCCACTTTTTAGTT 59.111 36.000 6.88 0.00 0.00 2.24
278 279 7.055378 TGGTGTTTCTAGCCACTTTTTAGTTA 58.945 34.615 6.88 0.00 0.00 2.24
279 280 7.722285 TGGTGTTTCTAGCCACTTTTTAGTTAT 59.278 33.333 6.88 0.00 0.00 1.89
280 281 8.021396 GGTGTTTCTAGCCACTTTTTAGTTATG 58.979 37.037 6.88 0.00 0.00 1.90
281 282 8.565416 GTGTTTCTAGCCACTTTTTAGTTATGT 58.435 33.333 0.00 0.00 0.00 2.29
282 283 8.564574 TGTTTCTAGCCACTTTTTAGTTATGTG 58.435 33.333 0.00 0.00 0.00 3.21
283 284 8.565416 GTTTCTAGCCACTTTTTAGTTATGTGT 58.435 33.333 0.00 0.00 0.00 3.72
284 285 7.667043 TCTAGCCACTTTTTAGTTATGTGTG 57.333 36.000 0.00 0.00 0.00 3.82
285 286 7.446769 TCTAGCCACTTTTTAGTTATGTGTGA 58.553 34.615 0.00 0.00 0.00 3.58
286 287 6.560253 AGCCACTTTTTAGTTATGTGTGAG 57.440 37.500 0.00 0.00 0.00 3.51
287 288 5.048713 AGCCACTTTTTAGTTATGTGTGAGC 60.049 40.000 0.00 0.00 0.00 4.26
288 289 5.048713 GCCACTTTTTAGTTATGTGTGAGCT 60.049 40.000 0.00 0.00 0.00 4.09
289 290 6.515035 GCCACTTTTTAGTTATGTGTGAGCTT 60.515 38.462 0.00 0.00 0.00 3.74
290 291 7.425606 CCACTTTTTAGTTATGTGTGAGCTTT 58.574 34.615 0.00 0.00 0.00 3.51
291 292 7.591426 CCACTTTTTAGTTATGTGTGAGCTTTC 59.409 37.037 0.00 0.00 0.00 2.62
292 293 8.345565 CACTTTTTAGTTATGTGTGAGCTTTCT 58.654 33.333 0.00 0.00 0.00 2.52
293 294 8.903820 ACTTTTTAGTTATGTGTGAGCTTTCTT 58.096 29.630 0.00 0.00 0.00 2.52
294 295 9.736023 CTTTTTAGTTATGTGTGAGCTTTCTTT 57.264 29.630 0.00 0.00 0.00 2.52
295 296 9.515020 TTTTTAGTTATGTGTGAGCTTTCTTTG 57.485 29.630 0.00 0.00 0.00 2.77
296 297 8.445275 TTTAGTTATGTGTGAGCTTTCTTTGA 57.555 30.769 0.00 0.00 0.00 2.69
297 298 8.621532 TTAGTTATGTGTGAGCTTTCTTTGAT 57.378 30.769 0.00 0.00 0.00 2.57
298 299 9.719355 TTAGTTATGTGTGAGCTTTCTTTGATA 57.281 29.630 0.00 0.00 0.00 2.15
299 300 8.798859 AGTTATGTGTGAGCTTTCTTTGATAT 57.201 30.769 0.00 0.00 0.00 1.63
300 301 9.236006 AGTTATGTGTGAGCTTTCTTTGATATT 57.764 29.630 0.00 0.00 0.00 1.28
301 302 9.495754 GTTATGTGTGAGCTTTCTTTGATATTC 57.504 33.333 0.00 0.00 0.00 1.75
302 303 7.692460 ATGTGTGAGCTTTCTTTGATATTCA 57.308 32.000 0.00 0.00 0.00 2.57
303 304 7.692460 TGTGTGAGCTTTCTTTGATATTCAT 57.308 32.000 0.00 0.00 0.00 2.57
304 305 8.114331 TGTGTGAGCTTTCTTTGATATTCATT 57.886 30.769 0.00 0.00 0.00 2.57
305 306 9.230122 TGTGTGAGCTTTCTTTGATATTCATTA 57.770 29.630 0.00 0.00 0.00 1.90
306 307 9.495754 GTGTGAGCTTTCTTTGATATTCATTAC 57.504 33.333 0.00 0.00 0.00 1.89
307 308 9.453572 TGTGAGCTTTCTTTGATATTCATTACT 57.546 29.630 0.00 0.00 0.00 2.24
322 323 9.753674 ATATTCATTACTTTTGGAGACTTTGGA 57.246 29.630 0.00 0.00 0.00 3.53
323 324 7.889873 TTCATTACTTTTGGAGACTTTGGAA 57.110 32.000 0.00 0.00 0.00 3.53
324 325 7.272037 TCATTACTTTTGGAGACTTTGGAAC 57.728 36.000 0.00 0.00 0.00 3.62
325 326 6.264518 TCATTACTTTTGGAGACTTTGGAACC 59.735 38.462 0.00 0.00 0.00 3.62
326 327 4.251103 ACTTTTGGAGACTTTGGAACCT 57.749 40.909 0.00 0.00 0.00 3.50
327 328 4.610333 ACTTTTGGAGACTTTGGAACCTT 58.390 39.130 0.00 0.00 0.00 3.50
328 329 4.402474 ACTTTTGGAGACTTTGGAACCTTG 59.598 41.667 0.00 0.00 0.00 3.61
329 330 3.662759 TTGGAGACTTTGGAACCTTGT 57.337 42.857 0.00 0.00 0.00 3.16
330 331 3.662759 TGGAGACTTTGGAACCTTGTT 57.337 42.857 0.00 0.00 0.00 2.83
331 332 3.551846 TGGAGACTTTGGAACCTTGTTC 58.448 45.455 0.00 0.00 0.00 3.18
332 333 2.548480 GGAGACTTTGGAACCTTGTTCG 59.452 50.000 1.26 0.00 0.00 3.95
333 334 1.947456 AGACTTTGGAACCTTGTTCGC 59.053 47.619 1.26 0.00 0.00 4.70
334 335 1.673920 GACTTTGGAACCTTGTTCGCA 59.326 47.619 1.26 0.00 0.00 5.10
335 336 1.404035 ACTTTGGAACCTTGTTCGCAC 59.596 47.619 1.26 0.00 0.00 5.34
336 337 1.676006 CTTTGGAACCTTGTTCGCACT 59.324 47.619 1.26 0.00 0.00 4.40
337 338 1.757682 TTGGAACCTTGTTCGCACTT 58.242 45.000 1.26 0.00 0.00 3.16
338 339 1.305201 TGGAACCTTGTTCGCACTTC 58.695 50.000 1.26 0.00 0.00 3.01
339 340 1.134220 TGGAACCTTGTTCGCACTTCT 60.134 47.619 1.26 0.00 0.00 2.85
340 341 1.947456 GGAACCTTGTTCGCACTTCTT 59.053 47.619 1.26 0.00 0.00 2.52
341 342 2.357952 GGAACCTTGTTCGCACTTCTTT 59.642 45.455 1.26 0.00 0.00 2.52
342 343 3.562557 GGAACCTTGTTCGCACTTCTTTA 59.437 43.478 1.26 0.00 0.00 1.85
343 344 4.215613 GGAACCTTGTTCGCACTTCTTTAT 59.784 41.667 1.26 0.00 0.00 1.40
344 345 5.278315 GGAACCTTGTTCGCACTTCTTTATT 60.278 40.000 1.26 0.00 0.00 1.40
345 346 5.767816 ACCTTGTTCGCACTTCTTTATTT 57.232 34.783 0.00 0.00 0.00 1.40
346 347 5.519722 ACCTTGTTCGCACTTCTTTATTTG 58.480 37.500 0.00 0.00 0.00 2.32
347 348 4.917415 CCTTGTTCGCACTTCTTTATTTGG 59.083 41.667 0.00 0.00 0.00 3.28
348 349 5.507315 CCTTGTTCGCACTTCTTTATTTGGT 60.507 40.000 0.00 0.00 0.00 3.67
349 350 5.508200 TGTTCGCACTTCTTTATTTGGTT 57.492 34.783 0.00 0.00 0.00 3.67
350 351 6.621316 TGTTCGCACTTCTTTATTTGGTTA 57.379 33.333 0.00 0.00 0.00 2.85
351 352 7.028926 TGTTCGCACTTCTTTATTTGGTTAA 57.971 32.000 0.00 0.00 0.00 2.01
352 353 7.653647 TGTTCGCACTTCTTTATTTGGTTAAT 58.346 30.769 0.00 0.00 0.00 1.40
353 354 8.784994 TGTTCGCACTTCTTTATTTGGTTAATA 58.215 29.630 0.00 0.00 0.00 0.98
354 355 9.615295 GTTCGCACTTCTTTATTTGGTTAATAA 57.385 29.630 0.00 0.00 37.01 1.40
355 356 9.834628 TTCGCACTTCTTTATTTGGTTAATAAG 57.165 29.630 0.00 0.00 39.29 1.73
356 357 9.221933 TCGCACTTCTTTATTTGGTTAATAAGA 57.778 29.630 0.00 0.00 39.29 2.10
368 369 8.669946 TTTGGTTAATAAGATGATCGTATGCA 57.330 30.769 1.72 0.00 0.00 3.96
369 370 8.846943 TTGGTTAATAAGATGATCGTATGCAT 57.153 30.769 3.79 3.79 0.00 3.96
370 371 8.479313 TGGTTAATAAGATGATCGTATGCATC 57.521 34.615 0.19 0.00 40.85 3.91
371 372 8.093927 TGGTTAATAAGATGATCGTATGCATCA 58.906 33.333 0.19 0.00 42.52 3.07
372 373 9.102757 GGTTAATAAGATGATCGTATGCATCAT 57.897 33.333 0.19 0.00 42.57 2.45
376 377 6.723131 AAGATGATCGTATGCATCATTCTG 57.277 37.500 0.19 0.00 40.43 3.02
377 378 6.034161 AGATGATCGTATGCATCATTCTGA 57.966 37.500 0.19 0.00 40.43 3.27
378 379 6.641474 AGATGATCGTATGCATCATTCTGAT 58.359 36.000 0.19 0.00 40.43 2.90
393 394 9.642327 CATCATTCTGATGTAAAGATAGAGGAG 57.358 37.037 8.61 0.00 46.80 3.69
394 395 8.774546 TCATTCTGATGTAAAGATAGAGGAGT 57.225 34.615 0.00 0.00 34.77 3.85
395 396 8.855110 TCATTCTGATGTAAAGATAGAGGAGTC 58.145 37.037 0.00 0.00 34.77 3.36
396 397 8.859090 CATTCTGATGTAAAGATAGAGGAGTCT 58.141 37.037 0.00 0.00 36.75 3.24
397 398 8.830915 TTCTGATGTAAAGATAGAGGAGTCTT 57.169 34.615 0.00 0.00 36.29 3.01
398 399 8.458573 TCTGATGTAAAGATAGAGGAGTCTTC 57.541 38.462 0.00 0.00 33.76 2.87
399 400 7.504238 TCTGATGTAAAGATAGAGGAGTCTTCC 59.496 40.741 0.00 0.00 44.39 3.46
413 414 6.373186 GGAGTCTTCCTTTTCGAAAAAGAA 57.627 37.500 25.44 25.44 40.58 2.52
414 415 6.792326 GGAGTCTTCCTTTTCGAAAAAGAAA 58.208 36.000 26.41 17.88 40.58 2.52
446 447 4.200838 AGTGTTTTGGGACCAACTTTTG 57.799 40.909 2.68 0.00 35.46 2.44
525 539 0.109226 AGTCGCTACAGTTCCGCTTC 60.109 55.000 0.00 0.00 0.00 3.86
534 548 1.135972 CAGTTCCGCTTCATTTCGGTG 60.136 52.381 0.47 0.00 45.44 4.94
556 570 9.640963 CGGTGGTGAAAATAATATTGGTTTTAA 57.359 29.630 11.19 4.50 0.00 1.52
743 1714 1.067250 GCTCCTGAGGCATCTCGAC 59.933 63.158 0.00 0.00 42.79 4.20
884 3275 1.135024 CACCTTCATGGGCCGAAAATG 60.135 52.381 0.00 0.00 41.11 2.32
902 3293 2.568623 TGGAAACAAGGAGAAGCTCC 57.431 50.000 5.33 5.33 43.13 4.70
972 3389 2.279582 GCACCTGCGACGCTATATAT 57.720 50.000 22.08 0.00 0.00 0.86
994 3426 2.822399 CCTCCCATCGCCCTGTAC 59.178 66.667 0.00 0.00 0.00 2.90
1599 4110 5.642063 TGCAACCTAAAAGTATGCTACAGTC 59.358 40.000 0.00 0.00 37.86 3.51
1629 4144 1.803519 CTTGCCGAGTCTGACGAGC 60.804 63.158 11.24 11.24 0.00 5.03
1671 4210 1.531423 TCCCTGTCGTGTCTGTACTC 58.469 55.000 0.00 0.00 0.00 2.59
1718 4266 7.590322 CAGATTTGGCGATGAATAAATGAGAAG 59.410 37.037 0.00 0.00 0.00 2.85
1750 4300 2.950975 TGATTTTGAGTGCAGTGCAGAA 59.049 40.909 20.42 9.06 40.08 3.02
1837 4629 3.248602 CACTGACAGGCTTTGTTCTACAC 59.751 47.826 7.51 0.00 41.05 2.90
1904 4702 7.118825 TCTGTCTCACATTCAGCTTTCATTAAG 59.881 37.037 0.00 0.00 36.90 1.85
1982 7825 7.659390 ACTTCTATCTCACCTTCAGTTTTCTTG 59.341 37.037 0.00 0.00 0.00 3.02
1983 7826 6.467677 TCTATCTCACCTTCAGTTTTCTTGG 58.532 40.000 0.00 0.00 0.00 3.61
2106 7967 8.519799 ACTCAAATGAAGTCCAAACTTAAGAA 57.480 30.769 10.09 0.00 45.80 2.52
2122 7983 2.292828 AGAATTATCCCGGCCAATGG 57.707 50.000 2.24 0.00 0.00 3.16
2128 7989 2.283532 CCCGGCCAATGGGTTGAA 60.284 61.111 2.24 0.00 42.07 2.69
2129 7990 1.910772 CCCGGCCAATGGGTTGAAA 60.911 57.895 2.24 0.00 42.07 2.69
2130 7991 1.476007 CCCGGCCAATGGGTTGAAAA 61.476 55.000 2.24 0.00 42.07 2.29
2131 7992 0.612744 CCGGCCAATGGGTTGAAAAT 59.387 50.000 2.24 0.00 37.53 1.82
2132 7993 1.827969 CCGGCCAATGGGTTGAAAATA 59.172 47.619 2.24 0.00 37.53 1.40
2133 7994 2.234908 CCGGCCAATGGGTTGAAAATAA 59.765 45.455 2.24 0.00 37.53 1.40
2134 7995 3.118445 CCGGCCAATGGGTTGAAAATAAT 60.118 43.478 2.24 0.00 37.53 1.28
2135 7996 3.870419 CGGCCAATGGGTTGAAAATAATG 59.130 43.478 2.24 0.00 37.53 1.90
2176 8037 4.161001 TCCCTCCGTTTCTATTTAGTCCAC 59.839 45.833 0.00 0.00 0.00 4.02
2385 8248 9.942850 TTGACTTCAATCAACTCTAATATGTGA 57.057 29.630 0.00 0.00 33.62 3.58
2490 8354 3.374402 CGCCACCACTCGACTCCT 61.374 66.667 0.00 0.00 0.00 3.69
2520 8384 4.129737 CCTCACCGTCACCGCGAT 62.130 66.667 8.23 0.00 0.00 4.58
2531 8395 2.203070 CCGCGATAAAGCCCAGCT 60.203 61.111 8.23 0.00 42.56 4.24
2538 8402 2.737359 CGATAAAGCCCAGCTGACGTTA 60.737 50.000 17.39 15.25 39.62 3.18
2559 8423 0.621571 TGGCAGCAGGGATCTAACCT 60.622 55.000 0.00 0.00 39.43 3.50
2570 8434 3.827302 GGGATCTAACCTCTCTATTCGCA 59.173 47.826 0.00 0.00 0.00 5.10
2619 8483 1.374758 CAGGAGGCGTTGGACTGTC 60.375 63.158 0.00 0.00 0.00 3.51
2649 8514 2.639327 GGCACAACATCCACCCTGC 61.639 63.158 0.00 0.00 0.00 4.85
2698 8563 2.649129 GCAATGGTGAACTGGCCCC 61.649 63.158 0.00 0.00 0.00 5.80
2733 8598 2.125269 CGAACTGGGCCCCTAACG 60.125 66.667 22.27 16.37 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.476202 GGAATATAACCTGCAAAAATTGGATAC 57.524 33.333 0.00 0.00 0.00 2.24
27 28 8.356657 CGGAATATAACCTGCAAAAATTGGATA 58.643 33.333 0.00 0.00 0.00 2.59
28 29 7.147742 ACGGAATATAACCTGCAAAAATTGGAT 60.148 33.333 0.00 0.00 0.00 3.41
29 30 6.153680 ACGGAATATAACCTGCAAAAATTGGA 59.846 34.615 0.00 0.00 0.00 3.53
30 31 6.337356 ACGGAATATAACCTGCAAAAATTGG 58.663 36.000 0.00 0.00 0.00 3.16
31 32 8.188139 AGTACGGAATATAACCTGCAAAAATTG 58.812 33.333 0.00 0.00 0.00 2.32
32 33 8.288689 AGTACGGAATATAACCTGCAAAAATT 57.711 30.769 0.00 0.00 0.00 1.82
33 34 7.875327 AGTACGGAATATAACCTGCAAAAAT 57.125 32.000 0.00 0.00 0.00 1.82
34 35 7.010367 CGTAGTACGGAATATAACCTGCAAAAA 59.990 37.037 15.02 0.00 38.08 1.94
35 36 6.476380 CGTAGTACGGAATATAACCTGCAAAA 59.524 38.462 15.02 0.00 38.08 2.44
36 37 5.978919 CGTAGTACGGAATATAACCTGCAAA 59.021 40.000 15.02 0.00 38.08 3.68
37 38 5.299028 TCGTAGTACGGAATATAACCTGCAA 59.701 40.000 21.85 0.00 42.81 4.08
38 39 4.821260 TCGTAGTACGGAATATAACCTGCA 59.179 41.667 21.85 0.00 42.81 4.41
39 40 5.149977 GTCGTAGTACGGAATATAACCTGC 58.850 45.833 21.85 0.00 42.81 4.85
40 41 6.304356 TGTCGTAGTACGGAATATAACCTG 57.696 41.667 21.85 0.00 42.81 4.00
41 42 7.229306 TCAATGTCGTAGTACGGAATATAACCT 59.771 37.037 21.85 2.13 42.81 3.50
42 43 7.362662 TCAATGTCGTAGTACGGAATATAACC 58.637 38.462 21.85 1.31 42.81 2.85
43 44 8.961294 ATCAATGTCGTAGTACGGAATATAAC 57.039 34.615 21.85 11.44 42.81 1.89
44 45 8.239314 GGATCAATGTCGTAGTACGGAATATAA 58.761 37.037 21.85 0.00 42.81 0.98
45 46 7.413328 CGGATCAATGTCGTAGTACGGAATATA 60.413 40.741 21.85 2.11 42.81 0.86
46 47 6.618811 GGATCAATGTCGTAGTACGGAATAT 58.381 40.000 21.85 5.44 42.81 1.28
47 48 5.334337 CGGATCAATGTCGTAGTACGGAATA 60.334 44.000 21.85 3.19 42.81 1.75
48 49 4.556104 CGGATCAATGTCGTAGTACGGAAT 60.556 45.833 21.85 12.92 42.81 3.01
49 50 3.242837 CGGATCAATGTCGTAGTACGGAA 60.243 47.826 21.85 11.23 42.81 4.30
50 51 2.288729 CGGATCAATGTCGTAGTACGGA 59.711 50.000 21.85 11.38 42.81 4.69
51 52 2.032550 ACGGATCAATGTCGTAGTACGG 59.967 50.000 21.85 6.23 42.81 4.02
52 53 3.329743 ACGGATCAATGTCGTAGTACG 57.670 47.619 16.65 16.65 44.19 3.67
53 54 3.722780 CGAACGGATCAATGTCGTAGTAC 59.277 47.826 0.00 0.00 36.01 2.73
54 55 3.374988 ACGAACGGATCAATGTCGTAGTA 59.625 43.478 10.15 0.00 36.01 1.82
55 56 2.163010 ACGAACGGATCAATGTCGTAGT 59.837 45.455 10.15 4.62 36.01 2.73
56 57 2.530297 CACGAACGGATCAATGTCGTAG 59.470 50.000 11.13 4.70 36.01 3.51
57 58 2.521996 CACGAACGGATCAATGTCGTA 58.478 47.619 11.13 0.00 36.01 3.43
58 59 1.346365 CACGAACGGATCAATGTCGT 58.654 50.000 7.03 7.03 38.89 4.34
59 60 0.645355 CCACGAACGGATCAATGTCG 59.355 55.000 0.00 0.37 0.00 4.35
60 61 1.659098 GACCACGAACGGATCAATGTC 59.341 52.381 0.00 0.00 0.00 3.06
61 62 1.722011 GACCACGAACGGATCAATGT 58.278 50.000 0.00 0.00 0.00 2.71
62 63 0.645355 CGACCACGAACGGATCAATG 59.355 55.000 0.00 0.00 42.66 2.82
63 64 1.082117 GCGACCACGAACGGATCAAT 61.082 55.000 0.00 0.00 42.66 2.57
64 65 1.735198 GCGACCACGAACGGATCAA 60.735 57.895 0.00 0.00 42.66 2.57
65 66 1.307355 TAGCGACCACGAACGGATCA 61.307 55.000 0.00 0.00 42.66 2.92
66 67 0.864797 GTAGCGACCACGAACGGATC 60.865 60.000 0.00 0.00 42.66 3.36
67 68 1.138247 GTAGCGACCACGAACGGAT 59.862 57.895 0.00 0.00 42.66 4.18
68 69 1.915614 GAGTAGCGACCACGAACGGA 61.916 60.000 0.00 0.00 42.66 4.69
69 70 1.513586 GAGTAGCGACCACGAACGG 60.514 63.158 0.00 0.00 42.66 4.44
70 71 1.063951 GTGAGTAGCGACCACGAACG 61.064 60.000 0.00 0.00 42.66 3.95
71 72 0.731855 GGTGAGTAGCGACCACGAAC 60.732 60.000 10.67 0.00 42.66 3.95
72 73 1.582968 GGTGAGTAGCGACCACGAA 59.417 57.895 10.67 0.00 42.66 3.85
73 74 2.338015 GGGTGAGTAGCGACCACGA 61.338 63.158 10.67 0.00 42.66 4.35
74 75 2.181021 GGGTGAGTAGCGACCACG 59.819 66.667 10.67 0.00 42.93 4.94
75 76 2.577593 GGGGTGAGTAGCGACCAC 59.422 66.667 9.12 9.12 33.48 4.16
76 77 3.066190 CGGGGTGAGTAGCGACCA 61.066 66.667 0.00 0.00 33.48 4.02
77 78 2.753043 TCGGGGTGAGTAGCGACC 60.753 66.667 0.00 0.00 0.00 4.79
78 79 2.488820 GTCGGGGTGAGTAGCGAC 59.511 66.667 0.00 0.00 0.00 5.19
79 80 3.129502 CGTCGGGGTGAGTAGCGA 61.130 66.667 0.00 0.00 0.00 4.93
80 81 4.189188 CCGTCGGGGTGAGTAGCG 62.189 72.222 2.34 0.00 0.00 4.26
81 82 2.753043 TCCGTCGGGGTGAGTAGC 60.753 66.667 12.29 0.00 37.00 3.58
82 83 2.119655 CCTCCGTCGGGGTGAGTAG 61.120 68.421 10.99 0.00 37.00 2.57
83 84 2.044650 CCTCCGTCGGGGTGAGTA 60.045 66.667 10.99 0.00 37.00 2.59
91 92 4.148825 CTCCTTGGCCTCCGTCGG 62.149 72.222 4.39 4.39 0.00 4.79
92 93 4.821589 GCTCCTTGGCCTCCGTCG 62.822 72.222 3.32 0.00 0.00 5.12
93 94 2.543067 AATGCTCCTTGGCCTCCGTC 62.543 60.000 3.32 0.00 0.00 4.79
94 95 2.142292 AAATGCTCCTTGGCCTCCGT 62.142 55.000 3.32 0.00 0.00 4.69
95 96 1.379044 AAATGCTCCTTGGCCTCCG 60.379 57.895 3.32 0.00 0.00 4.63
96 97 1.325476 CCAAATGCTCCTTGGCCTCC 61.325 60.000 3.32 0.00 37.14 4.30
97 98 0.613012 ACCAAATGCTCCTTGGCCTC 60.613 55.000 3.32 0.00 46.20 4.70
98 99 0.178924 AACCAAATGCTCCTTGGCCT 60.179 50.000 3.32 0.00 46.20 5.19
99 100 1.204704 GTAACCAAATGCTCCTTGGCC 59.795 52.381 0.00 0.00 46.20 5.36
100 101 2.094545 CAGTAACCAAATGCTCCTTGGC 60.095 50.000 10.73 0.00 46.20 4.52
102 103 3.420893 TCCAGTAACCAAATGCTCCTTG 58.579 45.455 0.00 0.00 0.00 3.61
103 104 3.806949 TCCAGTAACCAAATGCTCCTT 57.193 42.857 0.00 0.00 0.00 3.36
104 105 3.525199 AGATCCAGTAACCAAATGCTCCT 59.475 43.478 0.00 0.00 0.00 3.69
105 106 3.891049 AGATCCAGTAACCAAATGCTCC 58.109 45.455 0.00 0.00 0.00 4.70
106 107 5.163612 GGAAAGATCCAGTAACCAAATGCTC 60.164 44.000 0.00 0.00 45.79 4.26
107 108 4.706962 GGAAAGATCCAGTAACCAAATGCT 59.293 41.667 0.00 0.00 45.79 3.79
108 109 4.438744 CGGAAAGATCCAGTAACCAAATGC 60.439 45.833 0.00 0.00 46.97 3.56
109 110 4.438744 GCGGAAAGATCCAGTAACCAAATG 60.439 45.833 0.00 0.00 46.97 2.32
110 111 3.694566 GCGGAAAGATCCAGTAACCAAAT 59.305 43.478 0.00 0.00 46.97 2.32
111 112 3.078837 GCGGAAAGATCCAGTAACCAAA 58.921 45.455 0.00 0.00 46.97 3.28
112 113 2.304761 AGCGGAAAGATCCAGTAACCAA 59.695 45.455 0.00 0.00 46.97 3.67
113 114 1.906574 AGCGGAAAGATCCAGTAACCA 59.093 47.619 0.00 0.00 46.97 3.67
114 115 2.280628 CAGCGGAAAGATCCAGTAACC 58.719 52.381 0.00 0.00 46.97 2.85
115 116 2.280628 CCAGCGGAAAGATCCAGTAAC 58.719 52.381 0.00 0.00 46.97 2.50
116 117 1.209504 CCCAGCGGAAAGATCCAGTAA 59.790 52.381 0.00 0.00 46.97 2.24
117 118 0.830648 CCCAGCGGAAAGATCCAGTA 59.169 55.000 0.00 0.00 46.97 2.74
118 119 0.909610 TCCCAGCGGAAAGATCCAGT 60.910 55.000 0.00 0.00 46.97 4.00
119 120 0.179062 CTCCCAGCGGAAAGATCCAG 60.179 60.000 0.00 0.00 46.97 3.86
120 121 0.617535 TCTCCCAGCGGAAAGATCCA 60.618 55.000 0.00 0.00 46.97 3.41
121 122 0.761802 ATCTCCCAGCGGAAAGATCC 59.238 55.000 0.00 0.00 42.80 3.36
122 123 1.542108 CCATCTCCCAGCGGAAAGATC 60.542 57.143 8.41 0.00 37.86 2.75
123 124 0.471617 CCATCTCCCAGCGGAAAGAT 59.528 55.000 0.00 2.47 37.86 2.40
124 125 0.909610 ACCATCTCCCAGCGGAAAGA 60.910 55.000 0.00 0.40 37.86 2.52
125 126 0.830648 TACCATCTCCCAGCGGAAAG 59.169 55.000 0.00 0.00 37.86 2.62
126 127 0.830648 CTACCATCTCCCAGCGGAAA 59.169 55.000 0.00 0.00 37.86 3.13
127 128 0.325296 ACTACCATCTCCCAGCGGAA 60.325 55.000 0.00 0.00 37.86 4.30
128 129 0.325296 AACTACCATCTCCCAGCGGA 60.325 55.000 0.00 0.00 36.45 5.54
129 130 0.105039 GAACTACCATCTCCCAGCGG 59.895 60.000 0.00 0.00 0.00 5.52
130 131 0.249073 CGAACTACCATCTCCCAGCG 60.249 60.000 0.00 0.00 0.00 5.18
131 132 0.105039 CCGAACTACCATCTCCCAGC 59.895 60.000 0.00 0.00 0.00 4.85
132 133 1.776662 TCCGAACTACCATCTCCCAG 58.223 55.000 0.00 0.00 0.00 4.45
133 134 2.241281 TTCCGAACTACCATCTCCCA 57.759 50.000 0.00 0.00 0.00 4.37
134 135 4.773149 AGATATTCCGAACTACCATCTCCC 59.227 45.833 0.00 0.00 0.00 4.30
135 136 5.986501 AGATATTCCGAACTACCATCTCC 57.013 43.478 0.00 0.00 0.00 3.71
136 137 6.982852 TGAAGATATTCCGAACTACCATCTC 58.017 40.000 0.00 0.00 0.00 2.75
137 138 6.978674 TGAAGATATTCCGAACTACCATCT 57.021 37.500 0.00 0.00 0.00 2.90
138 139 6.424207 GGTTGAAGATATTCCGAACTACCATC 59.576 42.308 0.00 0.00 0.00 3.51
139 140 6.289064 GGTTGAAGATATTCCGAACTACCAT 58.711 40.000 0.00 0.00 0.00 3.55
140 141 5.667466 GGTTGAAGATATTCCGAACTACCA 58.333 41.667 0.00 0.00 0.00 3.25
141 142 4.743644 CGGTTGAAGATATTCCGAACTACC 59.256 45.833 0.00 0.00 43.22 3.18
142 143 4.743644 CCGGTTGAAGATATTCCGAACTAC 59.256 45.833 0.00 0.00 43.22 2.73
143 144 4.403432 ACCGGTTGAAGATATTCCGAACTA 59.597 41.667 0.00 0.00 43.22 2.24
144 145 3.197116 ACCGGTTGAAGATATTCCGAACT 59.803 43.478 0.00 0.00 43.22 3.01
145 146 3.528532 ACCGGTTGAAGATATTCCGAAC 58.471 45.455 0.00 0.00 43.22 3.95
146 147 3.899052 ACCGGTTGAAGATATTCCGAA 57.101 42.857 0.00 0.00 43.22 4.30
147 148 3.899052 AACCGGTTGAAGATATTCCGA 57.101 42.857 21.56 0.00 43.22 4.55
148 149 3.064820 CCAAACCGGTTGAAGATATTCCG 59.935 47.826 23.08 0.00 39.87 4.30
149 150 4.266714 TCCAAACCGGTTGAAGATATTCC 58.733 43.478 23.08 0.00 39.87 3.01
150 151 5.588648 TCATCCAAACCGGTTGAAGATATTC 59.411 40.000 23.08 0.00 39.98 1.75
151 152 5.357032 GTCATCCAAACCGGTTGAAGATATT 59.643 40.000 23.08 0.00 43.62 1.28
152 153 4.881850 GTCATCCAAACCGGTTGAAGATAT 59.118 41.667 23.08 6.33 43.62 1.63
153 154 4.258543 GTCATCCAAACCGGTTGAAGATA 58.741 43.478 23.08 2.88 43.62 1.98
154 155 3.081804 GTCATCCAAACCGGTTGAAGAT 58.918 45.455 23.08 19.33 43.62 2.40
155 156 2.500229 GTCATCCAAACCGGTTGAAGA 58.500 47.619 23.08 17.89 43.62 2.87
156 157 1.196808 CGTCATCCAAACCGGTTGAAG 59.803 52.381 23.08 12.61 43.62 3.02
157 158 1.231221 CGTCATCCAAACCGGTTGAA 58.769 50.000 23.08 9.90 43.62 2.69
158 159 0.604243 CCGTCATCCAAACCGGTTGA 60.604 55.000 23.08 15.50 40.54 3.18
159 160 1.873165 CCGTCATCCAAACCGGTTG 59.127 57.895 23.08 14.70 35.78 3.77
160 161 4.390048 CCGTCATCCAAACCGGTT 57.610 55.556 15.86 15.86 35.78 4.44
162 163 0.392461 ATGACCGTCATCCAAACCGG 60.392 55.000 8.28 0.00 45.72 5.28
163 164 0.726827 CATGACCGTCATCCAAACCG 59.273 55.000 11.24 0.00 34.28 4.44
164 165 1.821216 ACATGACCGTCATCCAAACC 58.179 50.000 11.24 0.00 34.28 3.27
165 166 5.236478 CCTATTACATGACCGTCATCCAAAC 59.764 44.000 11.24 0.00 34.28 2.93
166 167 5.129650 TCCTATTACATGACCGTCATCCAAA 59.870 40.000 11.24 6.61 34.28 3.28
167 168 4.651962 TCCTATTACATGACCGTCATCCAA 59.348 41.667 11.24 8.58 34.28 3.53
168 169 4.219919 TCCTATTACATGACCGTCATCCA 58.780 43.478 11.24 0.00 34.28 3.41
169 170 4.866508 TCCTATTACATGACCGTCATCC 57.133 45.455 11.24 0.00 34.28 3.51
170 171 7.094334 TGTCTATCCTATTACATGACCGTCATC 60.094 40.741 11.24 0.00 34.28 2.92
171 172 6.719829 TGTCTATCCTATTACATGACCGTCAT 59.280 38.462 8.28 8.28 37.65 3.06
172 173 6.066032 TGTCTATCCTATTACATGACCGTCA 58.934 40.000 3.10 3.10 0.00 4.35
173 174 6.570672 TGTCTATCCTATTACATGACCGTC 57.429 41.667 0.00 0.00 0.00 4.79
174 175 7.540474 AATGTCTATCCTATTACATGACCGT 57.460 36.000 0.00 0.00 33.04 4.83
175 176 9.574458 CTAAATGTCTATCCTATTACATGACCG 57.426 37.037 0.00 0.00 33.04 4.79
196 197 9.610705 GGCTAAAGCTAGGTAAGTAAACTAAAT 57.389 33.333 1.39 0.00 41.70 1.40
197 198 8.596293 TGGCTAAAGCTAGGTAAGTAAACTAAA 58.404 33.333 1.39 0.00 41.70 1.85
198 199 8.137745 TGGCTAAAGCTAGGTAAGTAAACTAA 57.862 34.615 1.39 0.00 41.70 2.24
199 200 7.722949 TGGCTAAAGCTAGGTAAGTAAACTA 57.277 36.000 1.39 0.00 41.70 2.24
200 201 6.616237 TGGCTAAAGCTAGGTAAGTAAACT 57.384 37.500 1.39 0.00 41.70 2.66
201 202 6.905544 CTGGCTAAAGCTAGGTAAGTAAAC 57.094 41.667 7.41 0.00 44.59 2.01
212 213 0.392461 CAACCGGCTGGCTAAAGCTA 60.392 55.000 12.89 0.00 43.06 3.32
213 214 1.675641 CAACCGGCTGGCTAAAGCT 60.676 57.895 12.89 0.00 43.06 3.74
214 215 1.971695 ACAACCGGCTGGCTAAAGC 60.972 57.895 12.89 0.00 42.75 3.51
215 216 1.586154 CCACAACCGGCTGGCTAAAG 61.586 60.000 12.89 0.00 39.70 1.85
216 217 1.602323 CCACAACCGGCTGGCTAAA 60.602 57.895 12.89 0.00 39.70 1.85
217 218 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
225 226 0.888736 TGAACAGATGCCACAACCGG 60.889 55.000 0.00 0.00 0.00 5.28
226 227 1.135603 CATGAACAGATGCCACAACCG 60.136 52.381 0.00 0.00 0.00 4.44
227 228 1.203052 CCATGAACAGATGCCACAACC 59.797 52.381 0.00 0.00 0.00 3.77
228 229 1.403249 GCCATGAACAGATGCCACAAC 60.403 52.381 0.00 0.00 0.00 3.32
229 230 0.889994 GCCATGAACAGATGCCACAA 59.110 50.000 0.00 0.00 0.00 3.33
230 231 0.038599 AGCCATGAACAGATGCCACA 59.961 50.000 0.00 0.00 0.00 4.17
231 232 1.945394 CTAGCCATGAACAGATGCCAC 59.055 52.381 0.00 0.00 0.00 5.01
232 233 1.561076 ACTAGCCATGAACAGATGCCA 59.439 47.619 0.00 0.00 0.00 4.92
233 234 2.338577 ACTAGCCATGAACAGATGCC 57.661 50.000 0.00 0.00 0.00 4.40
234 235 2.357009 CCAACTAGCCATGAACAGATGC 59.643 50.000 0.00 0.00 0.00 3.91
235 236 3.376234 CACCAACTAGCCATGAACAGATG 59.624 47.826 0.00 0.00 0.00 2.90
236 237 3.009473 ACACCAACTAGCCATGAACAGAT 59.991 43.478 0.00 0.00 0.00 2.90
237 238 2.371841 ACACCAACTAGCCATGAACAGA 59.628 45.455 0.00 0.00 0.00 3.41
238 239 2.783135 ACACCAACTAGCCATGAACAG 58.217 47.619 0.00 0.00 0.00 3.16
239 240 2.949177 ACACCAACTAGCCATGAACA 57.051 45.000 0.00 0.00 0.00 3.18
240 241 3.821033 AGAAACACCAACTAGCCATGAAC 59.179 43.478 0.00 0.00 0.00 3.18
241 242 4.098914 AGAAACACCAACTAGCCATGAA 57.901 40.909 0.00 0.00 0.00 2.57
242 243 3.788227 AGAAACACCAACTAGCCATGA 57.212 42.857 0.00 0.00 0.00 3.07
248 249 4.273148 AGTGGCTAGAAACACCAACTAG 57.727 45.455 0.00 0.00 38.34 2.57
249 250 4.699925 AAGTGGCTAGAAACACCAACTA 57.300 40.909 0.00 0.00 38.34 2.24
250 251 3.577805 AAGTGGCTAGAAACACCAACT 57.422 42.857 0.00 0.00 38.34 3.16
251 252 4.649088 AAAAGTGGCTAGAAACACCAAC 57.351 40.909 0.00 0.00 38.34 3.77
252 253 5.889289 ACTAAAAAGTGGCTAGAAACACCAA 59.111 36.000 0.00 0.00 38.34 3.67
253 254 5.442391 ACTAAAAAGTGGCTAGAAACACCA 58.558 37.500 0.00 0.00 38.34 4.17
254 255 6.387041 AACTAAAAAGTGGCTAGAAACACC 57.613 37.500 0.00 0.00 38.34 4.16
255 256 8.565416 ACATAACTAAAAAGTGGCTAGAAACAC 58.435 33.333 0.00 0.00 37.86 3.32
256 257 8.564574 CACATAACTAAAAAGTGGCTAGAAACA 58.435 33.333 0.00 0.00 0.00 2.83
257 258 8.565416 ACACATAACTAAAAAGTGGCTAGAAAC 58.435 33.333 0.00 0.00 34.65 2.78
258 259 8.564574 CACACATAACTAAAAAGTGGCTAGAAA 58.435 33.333 0.00 0.00 34.65 2.52
259 260 7.934665 TCACACATAACTAAAAAGTGGCTAGAA 59.065 33.333 0.00 0.00 34.65 2.10
260 261 7.446769 TCACACATAACTAAAAAGTGGCTAGA 58.553 34.615 0.00 0.00 34.65 2.43
261 262 7.624344 GCTCACACATAACTAAAAAGTGGCTAG 60.624 40.741 0.00 0.00 34.65 3.42
262 263 6.148811 GCTCACACATAACTAAAAAGTGGCTA 59.851 38.462 0.00 0.00 34.65 3.93
263 264 5.048713 GCTCACACATAACTAAAAAGTGGCT 60.049 40.000 0.00 0.00 34.65 4.75
264 265 5.048713 AGCTCACACATAACTAAAAAGTGGC 60.049 40.000 0.00 0.00 34.65 5.01
265 266 6.560253 AGCTCACACATAACTAAAAAGTGG 57.440 37.500 0.00 0.00 34.65 4.00
266 267 8.345565 AGAAAGCTCACACATAACTAAAAAGTG 58.654 33.333 0.00 0.00 36.34 3.16
267 268 8.451908 AGAAAGCTCACACATAACTAAAAAGT 57.548 30.769 0.00 0.00 0.00 2.66
268 269 9.736023 AAAGAAAGCTCACACATAACTAAAAAG 57.264 29.630 0.00 0.00 0.00 2.27
269 270 9.515020 CAAAGAAAGCTCACACATAACTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
270 271 8.898761 TCAAAGAAAGCTCACACATAACTAAAA 58.101 29.630 0.00 0.00 0.00 1.52
271 272 8.445275 TCAAAGAAAGCTCACACATAACTAAA 57.555 30.769 0.00 0.00 0.00 1.85
272 273 8.621532 ATCAAAGAAAGCTCACACATAACTAA 57.378 30.769 0.00 0.00 0.00 2.24
273 274 9.890629 ATATCAAAGAAAGCTCACACATAACTA 57.109 29.630 0.00 0.00 0.00 2.24
274 275 8.798859 ATATCAAAGAAAGCTCACACATAACT 57.201 30.769 0.00 0.00 0.00 2.24
275 276 9.495754 GAATATCAAAGAAAGCTCACACATAAC 57.504 33.333 0.00 0.00 0.00 1.89
276 277 9.230122 TGAATATCAAAGAAAGCTCACACATAA 57.770 29.630 0.00 0.00 0.00 1.90
277 278 8.791327 TGAATATCAAAGAAAGCTCACACATA 57.209 30.769 0.00 0.00 0.00 2.29
278 279 7.692460 TGAATATCAAAGAAAGCTCACACAT 57.308 32.000 0.00 0.00 0.00 3.21
279 280 7.692460 ATGAATATCAAAGAAAGCTCACACA 57.308 32.000 0.00 0.00 0.00 3.72
280 281 9.495754 GTAATGAATATCAAAGAAAGCTCACAC 57.504 33.333 0.00 0.00 0.00 3.82
281 282 9.453572 AGTAATGAATATCAAAGAAAGCTCACA 57.546 29.630 0.00 0.00 0.00 3.58
296 297 9.753674 TCCAAAGTCTCCAAAAGTAATGAATAT 57.246 29.630 0.00 0.00 0.00 1.28
297 298 9.581289 TTCCAAAGTCTCCAAAAGTAATGAATA 57.419 29.630 0.00 0.00 0.00 1.75
298 299 8.360390 GTTCCAAAGTCTCCAAAAGTAATGAAT 58.640 33.333 0.00 0.00 0.00 2.57
299 300 7.201875 GGTTCCAAAGTCTCCAAAAGTAATGAA 60.202 37.037 0.00 0.00 0.00 2.57
300 301 6.264518 GGTTCCAAAGTCTCCAAAAGTAATGA 59.735 38.462 0.00 0.00 0.00 2.57
301 302 6.265422 AGGTTCCAAAGTCTCCAAAAGTAATG 59.735 38.462 0.00 0.00 0.00 1.90
302 303 6.373759 AGGTTCCAAAGTCTCCAAAAGTAAT 58.626 36.000 0.00 0.00 0.00 1.89
303 304 5.762279 AGGTTCCAAAGTCTCCAAAAGTAA 58.238 37.500 0.00 0.00 0.00 2.24
304 305 5.382664 AGGTTCCAAAGTCTCCAAAAGTA 57.617 39.130 0.00 0.00 0.00 2.24
305 306 4.251103 AGGTTCCAAAGTCTCCAAAAGT 57.749 40.909 0.00 0.00 0.00 2.66
306 307 4.402474 ACAAGGTTCCAAAGTCTCCAAAAG 59.598 41.667 0.00 0.00 0.00 2.27
307 308 4.349365 ACAAGGTTCCAAAGTCTCCAAAA 58.651 39.130 0.00 0.00 0.00 2.44
308 309 3.976015 ACAAGGTTCCAAAGTCTCCAAA 58.024 40.909 0.00 0.00 0.00 3.28
309 310 3.662759 ACAAGGTTCCAAAGTCTCCAA 57.337 42.857 0.00 0.00 0.00 3.53
310 311 3.551846 GAACAAGGTTCCAAAGTCTCCA 58.448 45.455 0.00 0.00 0.00 3.86
311 312 2.548480 CGAACAAGGTTCCAAAGTCTCC 59.452 50.000 3.72 0.00 0.00 3.71
312 313 2.031944 GCGAACAAGGTTCCAAAGTCTC 60.032 50.000 3.72 0.00 0.00 3.36
313 314 1.947456 GCGAACAAGGTTCCAAAGTCT 59.053 47.619 3.72 0.00 0.00 3.24
314 315 1.673920 TGCGAACAAGGTTCCAAAGTC 59.326 47.619 3.72 0.00 0.00 3.01
315 316 1.404035 GTGCGAACAAGGTTCCAAAGT 59.596 47.619 3.72 0.00 0.00 2.66
316 317 1.676006 AGTGCGAACAAGGTTCCAAAG 59.324 47.619 0.00 0.00 0.00 2.77
317 318 1.757682 AGTGCGAACAAGGTTCCAAA 58.242 45.000 0.00 0.00 0.00 3.28
318 319 1.673920 GAAGTGCGAACAAGGTTCCAA 59.326 47.619 0.00 0.00 0.00 3.53
319 320 1.134220 AGAAGTGCGAACAAGGTTCCA 60.134 47.619 0.00 0.97 0.00 3.53
320 321 1.594331 AGAAGTGCGAACAAGGTTCC 58.406 50.000 0.00 0.00 0.00 3.62
321 322 3.692791 AAAGAAGTGCGAACAAGGTTC 57.307 42.857 0.00 0.00 0.00 3.62
322 323 5.767816 AATAAAGAAGTGCGAACAAGGTT 57.232 34.783 0.00 0.00 0.00 3.50
323 324 5.507315 CCAAATAAAGAAGTGCGAACAAGGT 60.507 40.000 0.00 0.00 0.00 3.50
324 325 4.917415 CCAAATAAAGAAGTGCGAACAAGG 59.083 41.667 0.00 0.00 0.00 3.61
325 326 5.519722 ACCAAATAAAGAAGTGCGAACAAG 58.480 37.500 0.00 0.00 0.00 3.16
326 327 5.508200 ACCAAATAAAGAAGTGCGAACAA 57.492 34.783 0.00 0.00 0.00 2.83
327 328 5.508200 AACCAAATAAAGAAGTGCGAACA 57.492 34.783 0.00 0.00 0.00 3.18
328 329 9.615295 TTATTAACCAAATAAAGAAGTGCGAAC 57.385 29.630 0.00 0.00 37.15 3.95
329 330 9.834628 CTTATTAACCAAATAAAGAAGTGCGAA 57.165 29.630 0.00 0.00 39.10 4.70
330 331 9.221933 TCTTATTAACCAAATAAAGAAGTGCGA 57.778 29.630 0.00 0.00 39.10 5.10
342 343 9.283768 TGCATACGATCATCTTATTAACCAAAT 57.716 29.630 0.00 0.00 0.00 2.32
343 344 8.669946 TGCATACGATCATCTTATTAACCAAA 57.330 30.769 0.00 0.00 0.00 3.28
344 345 8.846943 ATGCATACGATCATCTTATTAACCAA 57.153 30.769 0.00 0.00 0.00 3.67
345 346 8.093927 TGATGCATACGATCATCTTATTAACCA 58.906 33.333 0.00 0.00 39.69 3.67
346 347 8.479313 TGATGCATACGATCATCTTATTAACC 57.521 34.615 0.00 0.00 39.69 2.85
350 351 8.880750 CAGAATGATGCATACGATCATCTTATT 58.119 33.333 0.00 0.00 39.21 1.40
351 352 8.255905 TCAGAATGATGCATACGATCATCTTAT 58.744 33.333 0.00 0.00 42.56 1.73
352 353 7.605449 TCAGAATGATGCATACGATCATCTTA 58.395 34.615 0.00 0.00 42.56 2.10
353 354 6.461640 TCAGAATGATGCATACGATCATCTT 58.538 36.000 0.00 0.00 42.56 2.40
354 355 6.034161 TCAGAATGATGCATACGATCATCT 57.966 37.500 0.00 0.00 42.56 2.90
370 371 8.859090 AGACTCCTCTATCTTTACATCAGAATG 58.141 37.037 0.00 0.00 38.93 2.67
371 372 9.432982 AAGACTCCTCTATCTTTACATCAGAAT 57.567 33.333 0.00 0.00 30.88 2.40
372 373 8.830915 AAGACTCCTCTATCTTTACATCAGAA 57.169 34.615 0.00 0.00 30.88 3.02
373 374 7.504238 GGAAGACTCCTCTATCTTTACATCAGA 59.496 40.741 0.00 0.00 38.88 3.27
374 375 7.657336 GGAAGACTCCTCTATCTTTACATCAG 58.343 42.308 0.00 0.00 38.88 2.90
375 376 7.589958 GGAAGACTCCTCTATCTTTACATCA 57.410 40.000 0.00 0.00 38.88 3.07
390 391 6.373186 TTCTTTTTCGAAAAGGAAGACTCC 57.627 37.500 32.19 0.00 38.53 3.85
391 392 7.753580 TGTTTTCTTTTTCGAAAAGGAAGACTC 59.246 33.333 38.56 29.33 43.34 3.36
392 393 7.541091 GTGTTTTCTTTTTCGAAAAGGAAGACT 59.459 33.333 38.56 0.00 43.34 3.24
393 394 7.461026 CGTGTTTTCTTTTTCGAAAAGGAAGAC 60.461 37.037 36.20 36.20 43.29 3.01
394 395 6.525280 CGTGTTTTCTTTTTCGAAAAGGAAGA 59.475 34.615 32.98 29.17 42.41 2.87
395 396 6.525280 TCGTGTTTTCTTTTTCGAAAAGGAAG 59.475 34.615 32.98 25.29 42.41 3.46
396 397 6.380190 TCGTGTTTTCTTTTTCGAAAAGGAA 58.620 32.000 32.19 32.19 41.87 3.36
397 398 5.940595 TCGTGTTTTCTTTTTCGAAAAGGA 58.059 33.333 26.07 26.07 41.87 3.36
398 399 6.806120 ATCGTGTTTTCTTTTTCGAAAAGG 57.194 33.333 22.73 22.73 41.87 3.11
399 400 7.880624 TGAATCGTGTTTTCTTTTTCGAAAAG 58.119 30.769 21.53 15.88 41.87 2.27
400 401 7.798486 TGAATCGTGTTTTCTTTTTCGAAAA 57.202 28.000 19.08 19.08 39.74 2.29
401 402 7.539366 ACTTGAATCGTGTTTTCTTTTTCGAAA 59.461 29.630 6.47 6.47 0.00 3.46
402 403 7.007905 CACTTGAATCGTGTTTTCTTTTTCGAA 59.992 33.333 0.00 0.00 0.00 3.71
403 404 6.467682 CACTTGAATCGTGTTTTCTTTTTCGA 59.532 34.615 0.00 0.00 0.00 3.71
404 405 6.250527 ACACTTGAATCGTGTTTTCTTTTTCG 59.749 34.615 0.00 0.00 42.56 3.46
405 406 7.506296 ACACTTGAATCGTGTTTTCTTTTTC 57.494 32.000 0.00 0.00 42.56 2.29
446 447 1.272769 ACGGAGAGTTGTTCCTAGCAC 59.727 52.381 0.00 0.00 32.34 4.40
525 539 7.978975 ACCAATATTATTTTCACCACCGAAATG 59.021 33.333 0.00 0.00 34.94 2.32
556 570 9.794685 CAATAGTAATATGTACAGATCGCTGAT 57.205 33.333 2.95 0.00 45.17 2.90
557 571 7.755373 GCAATAGTAATATGTACAGATCGCTGA 59.245 37.037 2.95 0.00 45.17 4.26
743 1714 6.392625 TTTCTAGGATACGACATGGAGAAG 57.607 41.667 0.00 0.00 46.39 2.85
923 3337 2.305928 AGCATCTCGACTACTCTGCAT 58.694 47.619 0.00 0.00 32.18 3.96
991 3423 4.825085 TGAAACTGATTTGAGTTGGGGTAC 59.175 41.667 0.00 0.00 36.28 3.34
992 3424 5.055265 TGAAACTGATTTGAGTTGGGGTA 57.945 39.130 0.00 0.00 36.28 3.69
994 3426 4.797275 GCTTGAAACTGATTTGAGTTGGGG 60.797 45.833 0.00 0.00 36.28 4.96
1599 4110 0.934496 TCGGCAAGAACAAAGACACG 59.066 50.000 0.00 0.00 0.00 4.49
1629 4144 5.551760 AAAGAAACGCAATACAGAGATGG 57.448 39.130 0.00 0.00 0.00 3.51
1671 4210 3.743911 TGTTGGCGATTACACAAGTACAG 59.256 43.478 0.00 0.00 0.00 2.74
1718 4266 7.649306 ACTGCACTCAAAATCAGAACAATTTAC 59.351 33.333 0.00 0.00 0.00 2.01
1772 4322 5.651530 TCCGAAACACAAGCAAAAACAATA 58.348 33.333 0.00 0.00 0.00 1.90
1829 4621 7.861630 TCTTTAAGCAGATGTTTGTGTAGAAC 58.138 34.615 0.00 0.00 0.00 3.01
1837 4629 7.466805 TCGATCATTCTTTAAGCAGATGTTTG 58.533 34.615 0.00 0.00 0.00 2.93
1873 4665 2.999355 GCTGAATGTGAGACAGAAGACC 59.001 50.000 0.00 0.00 34.07 3.85
1904 4702 0.530744 TGATCAGTGTAGACCCACGC 59.469 55.000 0.00 0.00 40.33 5.34
1982 7825 7.445707 ACTGAAGGTATTTCTCAAGAAAGAACC 59.554 37.037 21.26 21.26 45.87 3.62
1983 7826 8.384607 ACTGAAGGTATTTCTCAAGAAAGAAC 57.615 34.615 10.65 8.83 45.87 3.01
2122 7983 8.846943 AGATTTTCAACCCATTATTTTCAACC 57.153 30.769 0.00 0.00 0.00 3.77
2129 7990 9.628500 GGAGTAGTAGATTTTCAACCCATTATT 57.372 33.333 0.00 0.00 0.00 1.40
2130 7991 8.218488 GGGAGTAGTAGATTTTCAACCCATTAT 58.782 37.037 0.00 0.00 34.43 1.28
2131 7992 7.404980 AGGGAGTAGTAGATTTTCAACCCATTA 59.595 37.037 0.00 0.00 36.44 1.90
2132 7993 6.217693 AGGGAGTAGTAGATTTTCAACCCATT 59.782 38.462 0.00 0.00 36.44 3.16
2133 7994 5.731678 AGGGAGTAGTAGATTTTCAACCCAT 59.268 40.000 0.00 0.00 36.44 4.00
2134 7995 5.098663 AGGGAGTAGTAGATTTTCAACCCA 58.901 41.667 0.00 0.00 36.44 4.51
2135 7996 5.396548 GGAGGGAGTAGTAGATTTTCAACCC 60.397 48.000 0.00 0.00 0.00 4.11
2406 8269 9.678941 GGTTGTCTTAAGAAAAATTACTGGAAG 57.321 33.333 9.73 0.00 42.29 3.46
2417 8281 3.227614 GGGCAGGGTTGTCTTAAGAAAA 58.772 45.455 6.78 5.20 0.00 2.29
2490 8354 1.201429 GGTGAGGGAGAAAGGCTGGA 61.201 60.000 0.00 0.00 0.00 3.86
2520 8384 1.621814 ACTAACGTCAGCTGGGCTTTA 59.378 47.619 15.13 10.24 36.40 1.85
2531 8395 1.005037 CCTGCTGCCACTAACGTCA 60.005 57.895 0.00 0.00 0.00 4.35
2538 8402 0.543749 GTTAGATCCCTGCTGCCACT 59.456 55.000 0.00 0.00 0.00 4.00
2559 8423 1.469251 GCCGTCAACTGCGAATAGAGA 60.469 52.381 0.00 0.00 0.00 3.10
2601 8465 1.374758 GACAGTCCAACGCCTCCTG 60.375 63.158 0.00 0.00 0.00 3.86
2717 8582 2.271173 CCGTTAGGGGCCCAGTTC 59.729 66.667 27.72 5.74 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.