Multiple sequence alignment - TraesCS3A01G034300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G034300 chr3A 100.000 5444 0 0 1 5444 19370319 19375762 0.000000e+00 10054
1 TraesCS3A01G034300 chr3A 86.347 3999 346 94 825 4752 19474949 19471080 0.000000e+00 4176
2 TraesCS3A01G034300 chr3A 84.378 1818 205 40 2677 4442 19306101 19307891 0.000000e+00 1711
3 TraesCS3A01G034300 chr3A 83.757 1022 121 29 890 1882 25936345 25935340 0.000000e+00 926
4 TraesCS3A01G034300 chr3A 85.322 729 93 11 1021 1742 26396030 26396751 0.000000e+00 741
5 TraesCS3A01G034300 chr3A 84.739 498 60 11 2928 3412 25933997 25933503 8.200000e-133 484
6 TraesCS3A01G034300 chr3A 78.488 516 56 22 1832 2321 25935312 25934826 2.480000e-73 287
7 TraesCS3A01G034300 chr3A 83.186 226 24 11 1865 2079 19305136 19305358 1.550000e-45 195
8 TraesCS3A01G034300 chr3D 85.596 3999 365 108 825 4762 17374235 17378083 0.000000e+00 3999
9 TraesCS3A01G034300 chr3D 92.814 2644 153 17 2669 5304 17515376 17512762 0.000000e+00 3795
10 TraesCS3A01G034300 chr3D 89.589 1604 109 31 737 2327 17517045 17515487 0.000000e+00 1984
11 TraesCS3A01G034300 chr3D 83.066 1872 230 60 2614 4442 17644058 17642231 0.000000e+00 1620
12 TraesCS3A01G034300 chr3D 88.949 1294 110 19 3155 4442 11354422 11355688 0.000000e+00 1567
13 TraesCS3A01G034300 chr3D 82.042 1342 164 44 825 2116 17645542 17644228 0.000000e+00 1072
14 TraesCS3A01G034300 chr3D 77.193 570 66 29 1866 2407 11353197 11353730 1.930000e-69 274
15 TraesCS3A01G034300 chr3D 88.732 142 9 3 1 135 17517412 17517271 3.370000e-37 167
16 TraesCS3A01G034300 chr3B 90.281 2418 180 23 2669 5061 27518174 27520561 0.000000e+00 3112
17 TraesCS3A01G034300 chr3B 90.529 1626 108 26 733 2327 27516451 27518061 0.000000e+00 2108
18 TraesCS3A01G034300 chr3B 94.762 1279 60 5 3491 4762 24943724 24945002 0.000000e+00 1984
19 TraesCS3A01G034300 chr3B 87.617 1066 96 21 1021 2079 24941531 24942567 0.000000e+00 1205
20 TraesCS3A01G034300 chr3B 86.119 706 91 6 1034 1739 30231887 30232585 0.000000e+00 754
21 TraesCS3A01G034300 chr3B 81.703 787 77 33 2678 3439 24942982 24943726 1.310000e-165 593
22 TraesCS3A01G034300 chr3B 87.853 354 32 3 144 497 24940792 24941134 6.570000e-109 405
23 TraesCS3A01G034300 chr3B 86.857 175 15 4 5054 5226 27521508 27521676 7.200000e-44 189
24 TraesCS3A01G034300 chr3B 86.986 146 8 1 1 135 27516024 27516169 2.630000e-33 154
25 TraesCS3A01G034300 chrUn 87.011 1355 147 22 3094 4442 354553156 354551825 0.000000e+00 1500
26 TraesCS3A01G034300 chrUn 82.430 1070 134 30 838 1879 37955649 37956692 0.000000e+00 885
27 TraesCS3A01G034300 chrUn 82.786 761 92 21 1142 1882 392408913 392408172 1.280000e-180 643
28 TraesCS3A01G034300 chr6B 93.478 138 9 0 570 707 125632994 125632857 7.150000e-49 206
29 TraesCS3A01G034300 chr2A 92.647 136 10 0 572 707 541195702 541195837 4.300000e-46 196
30 TraesCS3A01G034300 chr6A 93.701 127 8 0 575 701 163199404 163199278 2.000000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G034300 chr3A 19370319 19375762 5443 False 10054.000000 10054 100.000000 1 5444 1 chr3A.!!$F1 5443
1 TraesCS3A01G034300 chr3A 19471080 19474949 3869 True 4176.000000 4176 86.347000 825 4752 1 chr3A.!!$R1 3927
2 TraesCS3A01G034300 chr3A 19305136 19307891 2755 False 953.000000 1711 83.782000 1865 4442 2 chr3A.!!$F3 2577
3 TraesCS3A01G034300 chr3A 26396030 26396751 721 False 741.000000 741 85.322000 1021 1742 1 chr3A.!!$F2 721
4 TraesCS3A01G034300 chr3A 25933503 25936345 2842 True 565.666667 926 82.328000 890 3412 3 chr3A.!!$R2 2522
5 TraesCS3A01G034300 chr3D 17374235 17378083 3848 False 3999.000000 3999 85.596000 825 4762 1 chr3D.!!$F1 3937
6 TraesCS3A01G034300 chr3D 17512762 17517412 4650 True 1982.000000 3795 90.378333 1 5304 3 chr3D.!!$R1 5303
7 TraesCS3A01G034300 chr3D 17642231 17645542 3311 True 1346.000000 1620 82.554000 825 4442 2 chr3D.!!$R2 3617
8 TraesCS3A01G034300 chr3D 11353197 11355688 2491 False 920.500000 1567 83.071000 1866 4442 2 chr3D.!!$F2 2576
9 TraesCS3A01G034300 chr3B 27516024 27521676 5652 False 1390.750000 3112 88.663250 1 5226 4 chr3B.!!$F3 5225
10 TraesCS3A01G034300 chr3B 24940792 24945002 4210 False 1046.750000 1984 87.983750 144 4762 4 chr3B.!!$F2 4618
11 TraesCS3A01G034300 chr3B 30231887 30232585 698 False 754.000000 754 86.119000 1034 1739 1 chr3B.!!$F1 705
12 TraesCS3A01G034300 chrUn 354551825 354553156 1331 True 1500.000000 1500 87.011000 3094 4442 1 chrUn.!!$R1 1348
13 TraesCS3A01G034300 chrUn 37955649 37956692 1043 False 885.000000 885 82.430000 838 1879 1 chrUn.!!$F1 1041
14 TraesCS3A01G034300 chrUn 392408172 392408913 741 True 643.000000 643 82.786000 1142 1882 1 chrUn.!!$R2 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 727 0.034616 AGAGCTGCACTTTTCTCGCT 59.965 50.0 1.02 0.0 0.00 4.93 F
683 747 0.179000 CCCGAGATTCCTGAAGTGGG 59.821 60.0 0.00 0.0 0.00 4.61 F
1494 1697 0.249398 ACGGCACCCATCTTGACTAC 59.751 55.0 0.00 0.0 0.00 2.73 F
1971 2305 0.678950 TCGAGTGCTGATTGGACACA 59.321 50.0 0.00 0.0 39.64 3.72 F
2697 3617 0.243365 TGCCACCATCAATTGCGAAC 59.757 50.0 0.00 0.0 0.00 3.95 F
3422 4482 0.833287 TTGCAGATGCTAGGACCTCC 59.167 55.0 0.00 0.0 42.66 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 3281 0.029834 GAACGCCATAAGCTGCCATG 59.970 55.0 0.00 0.07 40.39 3.66 R
2458 3322 0.761802 GGTGCCCTATTCTCTCCAGG 59.238 60.0 0.00 0.00 0.00 4.45 R
2674 3594 1.011333 GCAATTGATGGTGGCAATGC 58.989 50.0 10.34 0.00 36.20 3.56 R
3657 4726 0.170561 CGTACACCAGGAGAAGGTCG 59.829 60.0 0.00 0.00 37.23 4.79 R
4351 5420 0.598065 GGCGAAAACTGCAGGTCATT 59.402 50.0 19.93 2.95 0.00 2.57 R
4834 5929 0.453390 CCTGCCCGCAGAAAGAATTC 59.547 55.0 18.19 0.00 46.30 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 58 3.685139 TCAGCCTAGTTTGAACTCTGG 57.315 47.619 0.00 5.72 40.37 3.86
65 70 1.492993 AACTCTGGACCCTGAAGCCC 61.493 60.000 0.00 0.00 0.00 5.19
102 118 4.067192 CACACTGATGGACAATGTCTGAA 58.933 43.478 13.53 0.08 36.81 3.02
135 151 1.039068 TTGGTGCCATTTGGTGTCAG 58.961 50.000 0.00 0.00 37.57 3.51
136 152 1.290009 GGTGCCATTTGGTGTCAGC 59.710 57.895 0.00 0.00 37.57 4.26
138 154 0.388659 GTGCCATTTGGTGTCAGCAA 59.611 50.000 13.35 13.35 37.57 3.91
139 155 0.388659 TGCCATTTGGTGTCAGCAAC 59.611 50.000 16.79 6.56 35.07 4.17
140 156 0.664166 GCCATTTGGTGTCAGCAACG 60.664 55.000 16.79 10.92 35.07 4.10
141 157 0.039256 CCATTTGGTGTCAGCAACGG 60.039 55.000 16.79 15.61 35.07 4.44
205 221 0.970937 TCTCCGGCGAGAAAGGATGT 60.971 55.000 9.30 0.00 42.33 3.06
237 253 1.367102 CCAACACCGCCAGCAAAAT 59.633 52.632 0.00 0.00 0.00 1.82
262 278 0.809241 CTCCGTTCTCCATGAGCAGC 60.809 60.000 0.00 0.00 0.00 5.25
264 280 0.392193 CCGTTCTCCATGAGCAGCTT 60.392 55.000 0.00 0.00 0.00 3.74
266 282 1.673923 CGTTCTCCATGAGCAGCTTCA 60.674 52.381 0.00 0.00 0.00 3.02
267 283 2.430465 GTTCTCCATGAGCAGCTTCAA 58.570 47.619 0.00 0.00 0.00 2.69
295 311 5.825593 ACCAGAACCTCATCTTCTACAAA 57.174 39.130 0.00 0.00 0.00 2.83
300 316 3.589988 ACCTCATCTTCTACAAACTGCG 58.410 45.455 0.00 0.00 0.00 5.18
302 318 3.257393 CTCATCTTCTACAAACTGCGCT 58.743 45.455 9.73 0.00 0.00 5.92
372 388 2.326550 GTGTGCCGGAACAACACG 59.673 61.111 19.50 0.00 36.71 4.49
377 393 1.942223 GCCGGAACAACACGTTTGC 60.942 57.895 5.05 0.00 38.19 3.68
431 447 3.911989 TCGTCCGAAGCTACGATTC 57.088 52.632 5.37 0.00 42.74 2.52
435 451 1.949631 CCGAAGCTACGATTCGCCC 60.950 63.158 5.86 0.00 46.23 6.13
481 497 2.528127 TTGGGGCGTCTGGGAAGA 60.528 61.111 0.00 0.00 0.00 2.87
497 513 2.681848 GGAAGATGAATGCCAGACACTG 59.318 50.000 0.00 0.00 0.00 3.66
499 515 0.737219 GATGAATGCCAGACACTGCC 59.263 55.000 0.00 0.00 0.00 4.85
500 516 0.038599 ATGAATGCCAGACACTGCCA 59.961 50.000 0.00 0.00 0.00 4.92
502 518 0.242017 GAATGCCAGACACTGCCAAC 59.758 55.000 0.00 0.00 0.00 3.77
503 519 1.181098 AATGCCAGACACTGCCAACC 61.181 55.000 0.00 0.00 0.00 3.77
505 521 2.425592 CCAGACACTGCCAACCGA 59.574 61.111 0.00 0.00 0.00 4.69
506 522 1.961277 CCAGACACTGCCAACCGAC 60.961 63.158 0.00 0.00 0.00 4.79
507 523 2.029073 AGACACTGCCAACCGACG 59.971 61.111 0.00 0.00 0.00 5.12
509 525 2.022129 GACACTGCCAACCGACGAG 61.022 63.158 0.00 0.00 0.00 4.18
510 526 2.029073 CACTGCCAACCGACGAGT 59.971 61.111 0.00 0.00 0.00 4.18
511 527 2.022129 CACTGCCAACCGACGAGTC 61.022 63.158 0.00 0.00 0.00 3.36
512 528 2.338620 CTGCCAACCGACGAGTCA 59.661 61.111 0.00 0.00 0.00 3.41
514 530 2.737376 GCCAACCGACGAGTCACC 60.737 66.667 0.00 0.00 0.00 4.02
515 531 2.430244 CCAACCGACGAGTCACCG 60.430 66.667 0.00 0.00 0.00 4.94
517 533 1.575922 CAACCGACGAGTCACCGTA 59.424 57.895 0.00 0.00 43.49 4.02
518 534 0.040157 CAACCGACGAGTCACCGTAA 60.040 55.000 0.00 0.00 43.49 3.18
525 589 1.000938 ACGAGTCACCGTAAGTTCACC 60.001 52.381 0.00 0.00 41.44 4.02
573 637 6.016108 CGGGTTCCTAGGAAACAAACAATTTA 60.016 38.462 34.92 4.40 43.15 1.40
574 638 7.375834 GGGTTCCTAGGAAACAAACAATTTAG 58.624 38.462 34.92 0.00 43.15 1.85
575 639 7.375834 GGTTCCTAGGAAACAAACAATTTAGG 58.624 38.462 30.94 0.00 41.18 2.69
576 640 6.584185 TCCTAGGAAACAAACAATTTAGGC 57.416 37.500 9.71 0.00 0.00 3.93
577 641 6.071984 TCCTAGGAAACAAACAATTTAGGCA 58.928 36.000 9.71 0.00 0.00 4.75
578 642 6.208599 TCCTAGGAAACAAACAATTTAGGCAG 59.791 38.462 9.71 0.00 0.00 4.85
579 643 5.869649 AGGAAACAAACAATTTAGGCAGT 57.130 34.783 0.00 0.00 0.00 4.40
580 644 5.600696 AGGAAACAAACAATTTAGGCAGTG 58.399 37.500 0.00 0.00 0.00 3.66
581 645 5.128663 AGGAAACAAACAATTTAGGCAGTGT 59.871 36.000 0.00 0.00 0.00 3.55
582 646 5.815222 GGAAACAAACAATTTAGGCAGTGTT 59.185 36.000 0.00 0.00 35.77 3.32
583 647 6.019075 GGAAACAAACAATTTAGGCAGTGTTC 60.019 38.462 0.00 0.00 33.18 3.18
584 648 4.606961 ACAAACAATTTAGGCAGTGTTCG 58.393 39.130 0.00 0.00 33.18 3.95
585 649 3.915437 AACAATTTAGGCAGTGTTCGG 57.085 42.857 0.00 0.00 28.08 4.30
586 650 3.134574 ACAATTTAGGCAGTGTTCGGA 57.865 42.857 0.00 0.00 0.00 4.55
587 651 3.482436 ACAATTTAGGCAGTGTTCGGAA 58.518 40.909 0.00 0.00 0.00 4.30
588 652 3.886505 ACAATTTAGGCAGTGTTCGGAAA 59.113 39.130 0.00 0.00 0.00 3.13
589 653 4.226761 CAATTTAGGCAGTGTTCGGAAAC 58.773 43.478 0.00 0.00 35.85 2.78
601 665 2.509561 GGAAACGCTCCGCTCCTC 60.510 66.667 0.00 0.00 33.37 3.71
602 666 2.261671 GAAACGCTCCGCTCCTCA 59.738 61.111 0.00 0.00 0.00 3.86
603 667 1.374252 GAAACGCTCCGCTCCTCAA 60.374 57.895 0.00 0.00 0.00 3.02
604 668 1.627550 GAAACGCTCCGCTCCTCAAC 61.628 60.000 0.00 0.00 0.00 3.18
605 669 2.100879 AAACGCTCCGCTCCTCAACT 62.101 55.000 0.00 0.00 0.00 3.16
606 670 2.202676 CGCTCCGCTCCTCAACTC 60.203 66.667 0.00 0.00 0.00 3.01
607 671 2.973899 GCTCCGCTCCTCAACTCA 59.026 61.111 0.00 0.00 0.00 3.41
608 672 1.153667 GCTCCGCTCCTCAACTCAG 60.154 63.158 0.00 0.00 0.00 3.35
609 673 1.153667 CTCCGCTCCTCAACTCAGC 60.154 63.158 0.00 0.00 0.00 4.26
610 674 1.603236 CTCCGCTCCTCAACTCAGCT 61.603 60.000 0.00 0.00 0.00 4.24
611 675 1.153667 CCGCTCCTCAACTCAGCTC 60.154 63.158 0.00 0.00 0.00 4.09
612 676 1.153667 CGCTCCTCAACTCAGCTCC 60.154 63.158 0.00 0.00 0.00 4.70
613 677 1.220477 GCTCCTCAACTCAGCTCCC 59.780 63.158 0.00 0.00 0.00 4.30
614 678 1.515020 CTCCTCAACTCAGCTCCCG 59.485 63.158 0.00 0.00 0.00 5.14
615 679 0.967887 CTCCTCAACTCAGCTCCCGA 60.968 60.000 0.00 0.00 0.00 5.14
616 680 0.541998 TCCTCAACTCAGCTCCCGAA 60.542 55.000 0.00 0.00 0.00 4.30
617 681 0.108424 CCTCAACTCAGCTCCCGAAG 60.108 60.000 0.00 0.00 0.00 3.79
630 694 4.749310 CGAAGCGGGCAGAGCTGT 62.749 66.667 0.00 0.00 45.31 4.40
631 695 2.579201 GAAGCGGGCAGAGCTGTA 59.421 61.111 0.00 0.00 45.31 2.74
632 696 1.520342 GAAGCGGGCAGAGCTGTAG 60.520 63.158 0.00 0.00 45.31 2.74
633 697 2.232298 GAAGCGGGCAGAGCTGTAGT 62.232 60.000 0.00 0.00 45.31 2.73
634 698 1.831652 AAGCGGGCAGAGCTGTAGTT 61.832 55.000 0.00 0.00 45.31 2.24
635 699 2.103042 GCGGGCAGAGCTGTAGTTG 61.103 63.158 0.00 0.00 0.00 3.16
636 700 1.591703 CGGGCAGAGCTGTAGTTGA 59.408 57.895 0.00 0.00 0.00 3.18
637 701 0.037326 CGGGCAGAGCTGTAGTTGAA 60.037 55.000 0.00 0.00 0.00 2.69
638 702 1.608025 CGGGCAGAGCTGTAGTTGAAA 60.608 52.381 0.00 0.00 0.00 2.69
639 703 2.504367 GGGCAGAGCTGTAGTTGAAAA 58.496 47.619 0.00 0.00 0.00 2.29
640 704 3.084786 GGGCAGAGCTGTAGTTGAAAAT 58.915 45.455 0.00 0.00 0.00 1.82
641 705 3.127721 GGGCAGAGCTGTAGTTGAAAATC 59.872 47.826 0.00 0.00 0.00 2.17
642 706 3.753272 GGCAGAGCTGTAGTTGAAAATCA 59.247 43.478 0.00 0.00 0.00 2.57
643 707 4.397417 GGCAGAGCTGTAGTTGAAAATCAT 59.603 41.667 0.00 0.00 0.00 2.45
644 708 5.586243 GGCAGAGCTGTAGTTGAAAATCATA 59.414 40.000 0.00 0.00 0.00 2.15
645 709 6.238320 GGCAGAGCTGTAGTTGAAAATCATAG 60.238 42.308 0.00 0.00 0.00 2.23
646 710 6.536582 GCAGAGCTGTAGTTGAAAATCATAGA 59.463 38.462 0.00 0.00 0.00 1.98
647 711 7.254387 GCAGAGCTGTAGTTGAAAATCATAGAG 60.254 40.741 0.00 0.00 0.00 2.43
648 712 6.760770 AGAGCTGTAGTTGAAAATCATAGAGC 59.239 38.462 0.00 3.30 32.49 4.09
649 713 6.648192 AGCTGTAGTTGAAAATCATAGAGCT 58.352 36.000 6.75 6.75 35.52 4.09
650 714 6.538021 AGCTGTAGTTGAAAATCATAGAGCTG 59.462 38.462 10.19 0.00 37.41 4.24
651 715 6.668541 TGTAGTTGAAAATCATAGAGCTGC 57.331 37.500 0.00 0.00 0.00 5.25
652 716 6.172630 TGTAGTTGAAAATCATAGAGCTGCA 58.827 36.000 1.02 0.00 0.00 4.41
653 717 5.557891 AGTTGAAAATCATAGAGCTGCAC 57.442 39.130 1.02 0.00 0.00 4.57
654 718 5.251764 AGTTGAAAATCATAGAGCTGCACT 58.748 37.500 4.73 4.73 0.00 4.40
655 719 5.709164 AGTTGAAAATCATAGAGCTGCACTT 59.291 36.000 4.63 0.00 0.00 3.16
656 720 6.208204 AGTTGAAAATCATAGAGCTGCACTTT 59.792 34.615 4.63 0.00 0.00 2.66
657 721 6.579666 TGAAAATCATAGAGCTGCACTTTT 57.420 33.333 4.63 0.00 0.00 2.27
658 722 6.615088 TGAAAATCATAGAGCTGCACTTTTC 58.385 36.000 4.63 9.12 33.91 2.29
659 723 6.432162 TGAAAATCATAGAGCTGCACTTTTCT 59.568 34.615 16.46 7.77 34.24 2.52
660 724 6.434018 AAATCATAGAGCTGCACTTTTCTC 57.566 37.500 4.63 0.00 0.00 2.87
661 725 3.515630 TCATAGAGCTGCACTTTTCTCG 58.484 45.455 4.63 0.00 0.00 4.04
662 726 1.714794 TAGAGCTGCACTTTTCTCGC 58.285 50.000 4.63 0.00 0.00 5.03
663 727 0.034616 AGAGCTGCACTTTTCTCGCT 59.965 50.000 1.02 0.00 0.00 4.93
664 728 0.441921 GAGCTGCACTTTTCTCGCTC 59.558 55.000 1.02 4.79 37.35 5.03
665 729 0.952984 AGCTGCACTTTTCTCGCTCC 60.953 55.000 1.02 0.00 0.00 4.70
666 730 1.916697 GCTGCACTTTTCTCGCTCCC 61.917 60.000 0.00 0.00 0.00 4.30
667 731 1.630244 CTGCACTTTTCTCGCTCCCG 61.630 60.000 0.00 0.00 0.00 5.14
668 732 1.374252 GCACTTTTCTCGCTCCCGA 60.374 57.895 0.00 0.00 42.01 5.14
676 740 3.526430 TCGCTCCCGAGATTCCTG 58.474 61.111 0.00 0.00 38.82 3.86
677 741 1.076995 TCGCTCCCGAGATTCCTGA 60.077 57.895 0.00 0.00 38.82 3.86
678 742 0.683179 TCGCTCCCGAGATTCCTGAA 60.683 55.000 0.00 0.00 38.82 3.02
679 743 0.249238 CGCTCCCGAGATTCCTGAAG 60.249 60.000 0.00 0.00 36.29 3.02
680 744 0.827368 GCTCCCGAGATTCCTGAAGT 59.173 55.000 0.00 0.00 0.00 3.01
681 745 1.472376 GCTCCCGAGATTCCTGAAGTG 60.472 57.143 0.00 0.00 0.00 3.16
682 746 1.137872 CTCCCGAGATTCCTGAAGTGG 59.862 57.143 0.00 0.00 0.00 4.00
683 747 0.179000 CCCGAGATTCCTGAAGTGGG 59.821 60.000 0.00 0.00 0.00 4.61
684 748 0.905357 CCGAGATTCCTGAAGTGGGT 59.095 55.000 0.00 0.00 0.00 4.51
685 749 1.406069 CCGAGATTCCTGAAGTGGGTG 60.406 57.143 0.00 0.00 0.00 4.61
686 750 1.406069 CGAGATTCCTGAAGTGGGTGG 60.406 57.143 0.00 0.00 0.00 4.61
687 751 0.995024 AGATTCCTGAAGTGGGTGGG 59.005 55.000 0.00 0.00 0.00 4.61
688 752 0.698818 GATTCCTGAAGTGGGTGGGT 59.301 55.000 0.00 0.00 0.00 4.51
689 753 1.075536 GATTCCTGAAGTGGGTGGGTT 59.924 52.381 0.00 0.00 0.00 4.11
690 754 0.476771 TTCCTGAAGTGGGTGGGTTC 59.523 55.000 0.00 0.00 0.00 3.62
691 755 1.074951 CCTGAAGTGGGTGGGTTCC 59.925 63.158 0.00 0.00 0.00 3.62
698 762 2.033602 GGGTGGGTTCCCGAACAG 59.966 66.667 9.65 0.00 42.85 3.16
699 763 2.033602 GGTGGGTTCCCGAACAGG 59.966 66.667 9.65 0.00 42.85 4.00
879 1022 0.678048 GCTCTGGCCTCCGTCATTTT 60.678 55.000 3.32 0.00 0.00 1.82
961 1132 4.867599 CTCGCCCGCTCCGGTTAC 62.868 72.222 0.00 0.00 46.80 2.50
988 1159 1.004230 TCCGGTCTCCATCCCCAAT 59.996 57.895 0.00 0.00 0.00 3.16
1053 1229 0.885879 TGCTCGTCGCTTCCTTTCTA 59.114 50.000 0.00 0.00 40.11 2.10
1494 1697 0.249398 ACGGCACCCATCTTGACTAC 59.751 55.000 0.00 0.00 0.00 2.73
1742 1948 5.371629 CGGTGAGTTGACGAAAATTAACTC 58.628 41.667 8.85 8.85 45.64 3.01
1956 2287 2.603412 CGCTGTTGCTAGGAGTATCGAG 60.603 54.545 0.00 0.00 36.97 4.04
1971 2305 0.678950 TCGAGTGCTGATTGGACACA 59.321 50.000 0.00 0.00 39.64 3.72
1994 2347 7.805071 CACAGATATTGTTGTTCTTTCAACTCC 59.195 37.037 10.18 0.00 45.26 3.85
1996 2367 8.571336 CAGATATTGTTGTTCTTTCAACTCCTT 58.429 33.333 10.18 0.00 45.26 3.36
2092 2668 8.522830 GTCCATTGATTGATTCCTAGTCAAAAA 58.477 33.333 0.00 0.00 38.89 1.94
2187 2768 5.424757 TGTTCCAAATAGACTATTCCCGTG 58.575 41.667 8.17 3.38 0.00 4.94
2322 3074 3.805207 ACTGTGGTTAGTTTCAGTGGAC 58.195 45.455 0.00 0.00 39.27 4.02
2323 3075 3.454812 ACTGTGGTTAGTTTCAGTGGACT 59.545 43.478 5.59 5.59 39.27 3.85
2324 3076 4.652421 ACTGTGGTTAGTTTCAGTGGACTA 59.348 41.667 0.00 3.95 39.27 2.59
2325 3077 4.952460 TGTGGTTAGTTTCAGTGGACTAC 58.048 43.478 6.75 1.08 0.00 2.73
2328 3080 6.495872 TGTGGTTAGTTTCAGTGGACTACTAT 59.504 38.462 6.75 0.00 37.60 2.12
2331 3083 9.263446 TGGTTAGTTTCAGTGGACTACTATATT 57.737 33.333 6.75 0.00 37.60 1.28
2332 3084 9.530633 GGTTAGTTTCAGTGGACTACTATATTG 57.469 37.037 6.75 0.00 37.60 1.90
2389 3253 1.800805 TAAGCAGTGCAGAAGAGTGC 58.199 50.000 19.20 0.00 44.27 4.40
2397 3261 1.416813 GCAGAAGAGTGCCGTGATCG 61.417 60.000 0.00 0.00 37.49 3.69
2417 3281 1.602377 GTACCGGTATTGCCAAGCATC 59.398 52.381 19.19 0.00 38.76 3.91
2429 3293 1.961394 CCAAGCATCATGGCAGCTTAT 59.039 47.619 16.12 0.00 46.01 1.73
2492 3386 1.238439 GCACCAAGCTAGCTTCAACA 58.762 50.000 27.08 0.00 41.15 3.33
2522 3416 4.621460 TCTTATCAGCTCTGTTCGTTTTCG 59.379 41.667 0.00 0.00 45.64 3.46
2523 3417 0.859232 TCAGCTCTGTTCGTTTTCGC 59.141 50.000 0.00 0.00 43.73 4.70
2543 3440 4.503007 TCGCGAAAACTATGATCTAACAGC 59.497 41.667 6.20 0.00 0.00 4.40
2567 3466 4.082026 ACATTGCTGTTAGATTTTGGCCTC 60.082 41.667 3.32 0.00 28.70 4.70
2578 3477 4.525874 AGATTTTGGCCTCCTTTTCAGAAG 59.474 41.667 3.32 0.00 0.00 2.85
2593 3505 7.965107 CCTTTTCAGAAGACTACAAATGTATGC 59.035 37.037 0.00 0.00 0.00 3.14
2604 3516 7.861630 ACTACAAATGTATGCATCCGTTAATC 58.138 34.615 0.19 0.00 33.50 1.75
2619 3531 4.414852 CGTTAATCCTGGCATCACTTTTG 58.585 43.478 0.00 0.00 0.00 2.44
2648 3560 6.349300 TCTAAATGTGGAGATTGGAGTAAGC 58.651 40.000 0.00 0.00 0.00 3.09
2649 3561 2.672961 TGTGGAGATTGGAGTAAGCG 57.327 50.000 0.00 0.00 0.00 4.68
2650 3562 1.291132 GTGGAGATTGGAGTAAGCGC 58.709 55.000 0.00 0.00 0.00 5.92
2651 3563 1.134670 GTGGAGATTGGAGTAAGCGCT 60.135 52.381 2.64 2.64 0.00 5.92
2653 3565 2.205911 GGAGATTGGAGTAAGCGCTTC 58.794 52.381 28.82 17.90 0.00 3.86
2667 3587 7.189512 AGTAAGCGCTTCAATGAAATGTATTC 58.810 34.615 28.82 0.00 0.00 1.75
2674 3594 8.013947 CGCTTCAATGAAATGTATTCTAGGATG 58.986 37.037 0.00 0.00 0.00 3.51
2693 3613 1.011333 GCATTGCCACCATCAATTGC 58.989 50.000 0.00 0.00 32.30 3.56
2697 3617 0.243365 TGCCACCATCAATTGCGAAC 59.757 50.000 0.00 0.00 0.00 3.95
2712 3632 3.896122 TGCGAACCTGAAATTTAACTGC 58.104 40.909 0.00 0.00 0.00 4.40
2784 3711 2.294512 AGAAGCTGCCAAAGTTAGCAAC 59.705 45.455 0.00 0.00 38.82 4.17
2846 3783 9.909644 TTTGTCAAGTGACTACTATACTTCTTC 57.090 33.333 12.43 0.00 44.99 2.87
2872 3841 7.687005 TTGTTACTTCATAAACCGCAAAAAG 57.313 32.000 0.00 0.00 0.00 2.27
2977 3959 1.694150 CTCGGCCCATCTATTCCTTCA 59.306 52.381 0.00 0.00 0.00 3.02
3010 4002 4.102524 TCCTCGCTCCAAATTGTACCATAT 59.897 41.667 0.00 0.00 0.00 1.78
3011 4003 4.214119 CCTCGCTCCAAATTGTACCATATG 59.786 45.833 0.00 0.00 0.00 1.78
3012 4004 4.133820 TCGCTCCAAATTGTACCATATGG 58.866 43.478 20.68 20.68 42.17 2.74
3013 4005 4.133820 CGCTCCAAATTGTACCATATGGA 58.866 43.478 28.77 9.19 38.94 3.41
3046 4040 5.067023 GGGGTGAAATCTCATGATGAAGAAC 59.933 44.000 0.00 0.00 33.05 3.01
3065 4067 9.483916 TGAAGAACTAATCAGATCGTTTGTTTA 57.516 29.630 8.67 0.00 0.00 2.01
3067 4069 8.252964 AGAACTAATCAGATCGTTTGTTTACC 57.747 34.615 8.67 0.83 0.00 2.85
3397 4432 7.667043 AACTCGTTGCTTGTCAATCTTATAA 57.333 32.000 0.00 0.00 36.99 0.98
3418 4453 7.736447 ATAAGTAAATTGCAGATGCTAGGAC 57.264 36.000 6.35 0.00 42.66 3.85
3422 4482 0.833287 TTGCAGATGCTAGGACCTCC 59.167 55.000 0.00 0.00 42.66 4.30
3552 4621 3.058501 CGGTGAAACGCCTTTACAAGAAT 60.059 43.478 0.00 0.00 38.12 2.40
3642 4711 2.304180 GGTCATCCTATATGGCTGCACT 59.696 50.000 0.50 0.00 32.27 4.40
3722 4791 2.094026 CAGACCATCTTCACGGATCACA 60.094 50.000 0.00 0.00 0.00 3.58
4062 5131 1.002868 GCCTGCTGTGGACATGAGT 60.003 57.895 0.00 0.00 0.00 3.41
4071 5140 1.555075 GTGGACATGAGTAGGAGCCAA 59.445 52.381 0.00 0.00 0.00 4.52
4126 5195 5.388654 ACAGGATTCAGAACCATGAAGTTT 58.611 37.500 0.00 0.00 42.20 2.66
4191 5260 3.107642 ACAAAGAGAACGATTGACCGT 57.892 42.857 0.00 0.00 45.64 4.83
4274 5343 2.044492 AGGTGGTGGAGATCCTGACTTA 59.956 50.000 0.00 0.00 36.82 2.24
4350 5419 4.077188 GACGCGCACTTGCTCACC 62.077 66.667 5.73 0.00 39.32 4.02
4351 5420 4.908687 ACGCGCACTTGCTCACCA 62.909 61.111 5.73 0.00 39.32 4.17
4484 5557 0.331616 AGAAATAAGGCCGCCCTGTT 59.668 50.000 5.55 0.00 41.90 3.16
4561 5637 7.670605 ACTAATAAGTACAGGCTCATGGTTA 57.329 36.000 0.00 0.00 32.84 2.85
4586 5662 5.871524 CAGTAACTCTGCATTTCTGAGCTTA 59.128 40.000 0.10 0.00 42.48 3.09
4649 5740 9.646522 AAATTCCAGGATAAGCACTGTAATATT 57.353 29.630 0.00 0.00 32.90 1.28
4651 5742 7.373617 TCCAGGATAAGCACTGTAATATTCA 57.626 36.000 0.00 0.00 32.90 2.57
4652 5743 7.977818 TCCAGGATAAGCACTGTAATATTCAT 58.022 34.615 0.00 0.00 32.90 2.57
4654 5745 9.896645 CCAGGATAAGCACTGTAATATTCATAT 57.103 33.333 0.00 0.00 32.90 1.78
4720 5815 9.552114 GAACTGATCAACATGCATATTATAAGC 57.448 33.333 0.00 0.00 0.00 3.09
4728 5823 9.634163 CAACATGCATATTATAAGCAATCACAT 57.366 29.630 6.23 0.00 42.15 3.21
4792 5887 1.200483 CGGCAGATACATCGTGTGAC 58.800 55.000 1.58 0.00 0.00 3.67
4834 5929 9.096160 GGCAGTTGTCATATATAATCATCTGAG 57.904 37.037 17.55 0.00 31.55 3.35
4848 5943 4.186926 TCATCTGAGAATTCTTTCTGCGG 58.813 43.478 9.87 1.51 42.34 5.69
4917 6012 2.831685 TTACTTGGTGTCAGCACGAT 57.168 45.000 14.70 1.90 46.13 3.73
4944 6039 6.803807 GGTACATTTTCTTCTGAAATCTGCAC 59.196 38.462 0.00 0.00 41.24 4.57
5025 6133 1.063764 GCTGCAGAATGTTGCTCTAGC 59.936 52.381 20.43 0.00 44.38 3.42
5090 7153 1.906574 AGTCCCGTGCTCATTTCCTTA 59.093 47.619 0.00 0.00 0.00 2.69
5094 7157 3.694072 TCCCGTGCTCATTTCCTTATTTG 59.306 43.478 0.00 0.00 0.00 2.32
5095 7158 3.694072 CCCGTGCTCATTTCCTTATTTGA 59.306 43.478 0.00 0.00 0.00 2.69
5096 7159 4.438744 CCCGTGCTCATTTCCTTATTTGAC 60.439 45.833 0.00 0.00 0.00 3.18
5103 7167 6.038714 GCTCATTTCCTTATTTGACGGAGAAT 59.961 38.462 0.00 0.00 0.00 2.40
5240 7304 6.260714 GGTTACATGTCATGAGTCATTGCATA 59.739 38.462 19.77 3.30 0.00 3.14
5304 7368 9.935682 ATGCTAAATTTGACACGAATAAGTATG 57.064 29.630 0.00 0.00 0.00 2.39
5305 7369 9.157104 TGCTAAATTTGACACGAATAAGTATGA 57.843 29.630 0.00 0.00 0.00 2.15
5306 7370 9.638300 GCTAAATTTGACACGAATAAGTATGAG 57.362 33.333 0.00 0.00 0.00 2.90
5307 7371 9.638300 CTAAATTTGACACGAATAAGTATGAGC 57.362 33.333 0.00 0.00 0.00 4.26
5308 7372 7.609760 AATTTGACACGAATAAGTATGAGCA 57.390 32.000 0.00 0.00 0.00 4.26
5309 7373 6.403333 TTTGACACGAATAAGTATGAGCAC 57.597 37.500 0.00 0.00 0.00 4.40
5310 7374 4.430007 TGACACGAATAAGTATGAGCACC 58.570 43.478 0.00 0.00 0.00 5.01
5311 7375 4.081917 TGACACGAATAAGTATGAGCACCA 60.082 41.667 0.00 0.00 0.00 4.17
5312 7376 5.023533 ACACGAATAAGTATGAGCACCAT 57.976 39.130 0.00 0.00 39.25 3.55
5313 7377 5.050490 ACACGAATAAGTATGAGCACCATC 58.950 41.667 0.00 0.00 36.71 3.51
5314 7378 5.163405 ACACGAATAAGTATGAGCACCATCT 60.163 40.000 0.00 0.00 36.71 2.90
5315 7379 5.403766 CACGAATAAGTATGAGCACCATCTC 59.596 44.000 0.00 0.00 36.71 2.75
5316 7380 5.069119 ACGAATAAGTATGAGCACCATCTCA 59.931 40.000 0.00 0.00 45.97 3.27
5317 7381 5.985530 CGAATAAGTATGAGCACCATCTCAA 59.014 40.000 0.00 0.00 45.17 3.02
5318 7382 6.145209 CGAATAAGTATGAGCACCATCTCAAG 59.855 42.308 0.00 0.00 45.17 3.02
5319 7383 6.737720 ATAAGTATGAGCACCATCTCAAGA 57.262 37.500 0.00 0.00 45.17 3.02
5320 7384 5.426689 AAGTATGAGCACCATCTCAAGAA 57.573 39.130 0.00 0.00 45.17 2.52
5321 7385 5.426689 AGTATGAGCACCATCTCAAGAAA 57.573 39.130 0.00 0.00 45.17 2.52
5322 7386 5.181748 AGTATGAGCACCATCTCAAGAAAC 58.818 41.667 0.00 0.00 45.17 2.78
5323 7387 3.777106 TGAGCACCATCTCAAGAAACT 57.223 42.857 0.00 0.00 39.89 2.66
5324 7388 4.890158 TGAGCACCATCTCAAGAAACTA 57.110 40.909 0.00 0.00 39.89 2.24
5325 7389 4.569943 TGAGCACCATCTCAAGAAACTAC 58.430 43.478 0.00 0.00 39.89 2.73
5326 7390 3.935828 GAGCACCATCTCAAGAAACTACC 59.064 47.826 0.00 0.00 33.41 3.18
5327 7391 3.010420 GCACCATCTCAAGAAACTACCC 58.990 50.000 0.00 0.00 0.00 3.69
5328 7392 3.559171 GCACCATCTCAAGAAACTACCCA 60.559 47.826 0.00 0.00 0.00 4.51
5329 7393 4.651778 CACCATCTCAAGAAACTACCCAA 58.348 43.478 0.00 0.00 0.00 4.12
5330 7394 5.070001 CACCATCTCAAGAAACTACCCAAA 58.930 41.667 0.00 0.00 0.00 3.28
5331 7395 5.048713 CACCATCTCAAGAAACTACCCAAAC 60.049 44.000 0.00 0.00 0.00 2.93
5332 7396 4.459337 CCATCTCAAGAAACTACCCAAACC 59.541 45.833 0.00 0.00 0.00 3.27
5333 7397 3.735591 TCTCAAGAAACTACCCAAACCG 58.264 45.455 0.00 0.00 0.00 4.44
5334 7398 3.388676 TCTCAAGAAACTACCCAAACCGA 59.611 43.478 0.00 0.00 0.00 4.69
5335 7399 4.131596 CTCAAGAAACTACCCAAACCGAA 58.868 43.478 0.00 0.00 0.00 4.30
5336 7400 4.525024 TCAAGAAACTACCCAAACCGAAA 58.475 39.130 0.00 0.00 0.00 3.46
5337 7401 4.336153 TCAAGAAACTACCCAAACCGAAAC 59.664 41.667 0.00 0.00 0.00 2.78
5338 7402 3.888583 AGAAACTACCCAAACCGAAACA 58.111 40.909 0.00 0.00 0.00 2.83
5339 7403 4.271661 AGAAACTACCCAAACCGAAACAA 58.728 39.130 0.00 0.00 0.00 2.83
5340 7404 4.705991 AGAAACTACCCAAACCGAAACAAA 59.294 37.500 0.00 0.00 0.00 2.83
5341 7405 5.361571 AGAAACTACCCAAACCGAAACAAAT 59.638 36.000 0.00 0.00 0.00 2.32
5342 7406 6.546772 AGAAACTACCCAAACCGAAACAAATA 59.453 34.615 0.00 0.00 0.00 1.40
5343 7407 5.952526 ACTACCCAAACCGAAACAAATAG 57.047 39.130 0.00 0.00 0.00 1.73
5344 7408 3.653539 ACCCAAACCGAAACAAATAGC 57.346 42.857 0.00 0.00 0.00 2.97
5345 7409 2.297880 ACCCAAACCGAAACAAATAGCC 59.702 45.455 0.00 0.00 0.00 3.93
5346 7410 2.297597 CCCAAACCGAAACAAATAGCCA 59.702 45.455 0.00 0.00 0.00 4.75
5347 7411 3.243907 CCCAAACCGAAACAAATAGCCAA 60.244 43.478 0.00 0.00 0.00 4.52
5348 7412 4.372656 CCAAACCGAAACAAATAGCCAAA 58.627 39.130 0.00 0.00 0.00 3.28
5349 7413 4.994217 CCAAACCGAAACAAATAGCCAAAT 59.006 37.500 0.00 0.00 0.00 2.32
5350 7414 6.159988 CCAAACCGAAACAAATAGCCAAATA 58.840 36.000 0.00 0.00 0.00 1.40
5351 7415 6.310224 CCAAACCGAAACAAATAGCCAAATAG 59.690 38.462 0.00 0.00 0.00 1.73
5352 7416 5.576447 ACCGAAACAAATAGCCAAATAGG 57.424 39.130 0.00 0.00 41.84 2.57
5368 7432 7.807977 CCAAATAGGCACAGTCACTAAATAT 57.192 36.000 0.00 0.00 0.00 1.28
5369 7433 7.865707 CCAAATAGGCACAGTCACTAAATATC 58.134 38.462 0.00 0.00 0.00 1.63
5370 7434 7.498900 CCAAATAGGCACAGTCACTAAATATCA 59.501 37.037 0.00 0.00 0.00 2.15
5371 7435 8.892723 CAAATAGGCACAGTCACTAAATATCAA 58.107 33.333 0.00 0.00 0.00 2.57
5372 7436 8.668510 AATAGGCACAGTCACTAAATATCAAG 57.331 34.615 0.00 0.00 0.00 3.02
5373 7437 4.878397 AGGCACAGTCACTAAATATCAAGC 59.122 41.667 0.00 0.00 0.00 4.01
5374 7438 4.878397 GGCACAGTCACTAAATATCAAGCT 59.122 41.667 0.00 0.00 0.00 3.74
5375 7439 6.049149 GGCACAGTCACTAAATATCAAGCTA 58.951 40.000 0.00 0.00 0.00 3.32
5376 7440 6.201806 GGCACAGTCACTAAATATCAAGCTAG 59.798 42.308 0.00 0.00 0.00 3.42
5377 7441 6.980978 GCACAGTCACTAAATATCAAGCTAGA 59.019 38.462 0.00 0.00 0.00 2.43
5378 7442 7.655328 GCACAGTCACTAAATATCAAGCTAGAT 59.345 37.037 0.00 0.00 0.00 1.98
5379 7443 9.539825 CACAGTCACTAAATATCAAGCTAGATT 57.460 33.333 0.00 0.00 0.00 2.40
5389 7453 8.457238 AATATCAAGCTAGATTTGAAGAACCC 57.543 34.615 12.35 0.00 38.01 4.11
5390 7454 5.241403 TCAAGCTAGATTTGAAGAACCCA 57.759 39.130 7.43 0.00 31.98 4.51
5391 7455 5.819991 TCAAGCTAGATTTGAAGAACCCAT 58.180 37.500 7.43 0.00 31.98 4.00
5392 7456 5.649395 TCAAGCTAGATTTGAAGAACCCATG 59.351 40.000 7.43 0.00 31.98 3.66
5393 7457 5.184892 AGCTAGATTTGAAGAACCCATGT 57.815 39.130 0.00 0.00 0.00 3.21
5394 7458 6.313519 AGCTAGATTTGAAGAACCCATGTA 57.686 37.500 0.00 0.00 0.00 2.29
5395 7459 6.904626 AGCTAGATTTGAAGAACCCATGTAT 58.095 36.000 0.00 0.00 0.00 2.29
5396 7460 8.034313 AGCTAGATTTGAAGAACCCATGTATA 57.966 34.615 0.00 0.00 0.00 1.47
5397 7461 8.494433 AGCTAGATTTGAAGAACCCATGTATAA 58.506 33.333 0.00 0.00 0.00 0.98
5398 7462 9.120538 GCTAGATTTGAAGAACCCATGTATAAA 57.879 33.333 0.00 0.00 0.00 1.40
5401 7465 9.178758 AGATTTGAAGAACCCATGTATAAAGTC 57.821 33.333 0.00 0.00 0.00 3.01
5402 7466 9.178758 GATTTGAAGAACCCATGTATAAAGTCT 57.821 33.333 0.00 0.00 0.00 3.24
5403 7467 8.934023 TTTGAAGAACCCATGTATAAAGTCTT 57.066 30.769 0.00 0.00 0.00 3.01
5404 7468 7.921786 TGAAGAACCCATGTATAAAGTCTTG 57.078 36.000 0.00 0.00 0.00 3.02
5405 7469 7.458397 TGAAGAACCCATGTATAAAGTCTTGT 58.542 34.615 0.00 0.00 0.00 3.16
5406 7470 8.598916 TGAAGAACCCATGTATAAAGTCTTGTA 58.401 33.333 0.00 0.00 0.00 2.41
5407 7471 8.788325 AAGAACCCATGTATAAAGTCTTGTAC 57.212 34.615 0.00 0.00 31.59 2.90
5408 7472 7.913789 AGAACCCATGTATAAAGTCTTGTACA 58.086 34.615 11.42 11.42 41.58 2.90
5409 7473 8.548877 AGAACCCATGTATAAAGTCTTGTACAT 58.451 33.333 13.96 13.96 45.51 2.29
5410 7474 9.826574 GAACCCATGTATAAAGTCTTGTACATA 57.173 33.333 17.15 0.00 43.85 2.29
5438 7502 8.737168 TGATGTTATGATGGAACTTTCTTAGG 57.263 34.615 0.00 0.00 0.00 2.69
5439 7503 8.548025 TGATGTTATGATGGAACTTTCTTAGGA 58.452 33.333 0.00 0.00 0.00 2.94
5440 7504 9.396022 GATGTTATGATGGAACTTTCTTAGGAA 57.604 33.333 0.00 0.00 0.00 3.36
5441 7505 9.753674 ATGTTATGATGGAACTTTCTTAGGAAA 57.246 29.630 0.00 0.00 38.90 3.13
5442 7506 9.581289 TGTTATGATGGAACTTTCTTAGGAAAA 57.419 29.630 1.36 0.00 40.41 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.389866 GATCCAGTCGTCCGCCGTAG 62.390 65.000 0.00 0.00 37.94 3.51
18 19 3.758088 CTGATCCAGTCGTCCGCCG 62.758 68.421 0.00 0.00 38.13 6.46
53 58 1.676967 CAAGCTGGGCTTCAGGGTC 60.677 63.158 1.50 0.00 46.77 4.46
65 70 1.623811 AGTGTGGGTACTACCAAGCTG 59.376 52.381 7.57 0.00 43.34 4.24
102 118 3.514706 TGGCACCAAAATTGATGCTATGT 59.485 39.130 12.02 0.00 38.18 2.29
136 152 4.379243 ACGAGCAGGGAGCCGTTG 62.379 66.667 0.00 0.00 44.05 4.10
141 157 2.650116 TTGGAGACGAGCAGGGAGC 61.650 63.158 0.00 0.00 46.19 4.70
163 179 1.372997 GAAGTCGCCGAGCTTGTGA 60.373 57.895 6.66 0.00 0.00 3.58
205 221 1.071814 GTTGGGCTTGGGTACGTGA 59.928 57.895 0.00 0.00 0.00 4.35
247 263 2.105006 TGAAGCTGCTCATGGAGAAC 57.895 50.000 1.00 0.00 33.10 3.01
262 278 3.142174 GAGGTTCTGGTTGAGGTTGAAG 58.858 50.000 0.00 0.00 0.00 3.02
264 280 2.123589 TGAGGTTCTGGTTGAGGTTGA 58.876 47.619 0.00 0.00 0.00 3.18
266 282 2.982488 AGATGAGGTTCTGGTTGAGGTT 59.018 45.455 0.00 0.00 0.00 3.50
267 283 2.625639 AGATGAGGTTCTGGTTGAGGT 58.374 47.619 0.00 0.00 0.00 3.85
300 316 4.874977 GAGCGACGGTGCCCTAGC 62.875 72.222 3.31 0.00 40.48 3.42
416 432 1.065273 GGCGAATCGTAGCTTCGGA 59.935 57.895 13.03 0.38 44.25 4.55
418 434 2.293627 CGGGCGAATCGTAGCTTCG 61.294 63.158 6.38 6.38 46.22 3.79
420 436 2.106332 CCGGGCGAATCGTAGCTT 59.894 61.111 4.07 0.00 0.00 3.74
465 481 2.285368 ATCTTCCCAGACGCCCCA 60.285 61.111 0.00 0.00 0.00 4.96
472 488 2.723322 CTGGCATTCATCTTCCCAGA 57.277 50.000 0.00 0.00 44.50 3.86
492 508 2.029073 CTCGTCGGTTGGCAGTGT 59.971 61.111 0.00 0.00 0.00 3.55
497 513 2.737376 GGTGACTCGTCGGTTGGC 60.737 66.667 0.00 0.00 0.00 4.52
499 515 0.040157 TTACGGTGACTCGTCGGTTG 60.040 55.000 2.56 0.00 42.82 3.77
500 516 0.239347 CTTACGGTGACTCGTCGGTT 59.761 55.000 2.56 0.00 42.82 4.44
502 518 0.239347 AACTTACGGTGACTCGTCGG 59.761 55.000 2.56 1.29 42.82 4.79
503 519 1.069703 TGAACTTACGGTGACTCGTCG 60.070 52.381 2.56 0.00 42.82 5.12
505 521 1.000938 GGTGAACTTACGGTGACTCGT 60.001 52.381 4.67 4.67 45.88 4.18
506 522 1.668047 GGGTGAACTTACGGTGACTCG 60.668 57.143 0.00 0.00 0.00 4.18
507 523 1.668047 CGGGTGAACTTACGGTGACTC 60.668 57.143 0.00 0.00 0.00 3.36
509 525 0.032540 ACGGGTGAACTTACGGTGAC 59.967 55.000 0.00 0.00 0.00 3.67
510 526 0.032403 CACGGGTGAACTTACGGTGA 59.968 55.000 0.00 0.00 31.40 4.02
511 527 0.032403 TCACGGGTGAACTTACGGTG 59.968 55.000 0.00 0.00 36.53 4.94
512 528 0.752054 TTCACGGGTGAACTTACGGT 59.248 50.000 10.04 0.00 43.90 4.83
525 589 6.414079 CGATAGAAAATGATCAGTTTCACGG 58.586 40.000 36.30 23.62 44.87 4.94
533 597 5.615289 AGGAACCCGATAGAAAATGATCAG 58.385 41.667 0.09 0.00 39.76 2.90
573 637 2.251642 GCGTTTCCGAACACTGCCT 61.252 57.895 0.00 0.00 35.44 4.75
574 638 2.171489 GAGCGTTTCCGAACACTGCC 62.171 60.000 0.00 0.00 35.44 4.85
575 639 1.204312 GAGCGTTTCCGAACACTGC 59.796 57.895 0.00 0.00 35.44 4.40
576 640 1.860078 GGAGCGTTTCCGAACACTG 59.140 57.895 0.00 0.00 35.91 3.66
577 641 4.355925 GGAGCGTTTCCGAACACT 57.644 55.556 0.00 0.00 35.91 3.55
591 655 1.153667 GCTGAGTTGAGGAGCGGAG 60.154 63.158 0.00 0.00 0.00 4.63
592 656 1.599606 GAGCTGAGTTGAGGAGCGGA 61.600 60.000 0.00 0.00 37.81 5.54
593 657 1.153667 GAGCTGAGTTGAGGAGCGG 60.154 63.158 0.00 0.00 37.81 5.52
594 658 1.153667 GGAGCTGAGTTGAGGAGCG 60.154 63.158 0.00 0.00 37.81 5.03
595 659 1.220477 GGGAGCTGAGTTGAGGAGC 59.780 63.158 0.00 0.00 0.00 4.70
596 660 0.967887 TCGGGAGCTGAGTTGAGGAG 60.968 60.000 0.00 0.00 0.00 3.69
597 661 0.541998 TTCGGGAGCTGAGTTGAGGA 60.542 55.000 0.00 0.00 0.00 3.71
598 662 0.108424 CTTCGGGAGCTGAGTTGAGG 60.108 60.000 0.00 0.00 0.00 3.86
599 663 3.432517 CTTCGGGAGCTGAGTTGAG 57.567 57.895 0.00 0.00 0.00 3.02
613 677 3.356639 TACAGCTCTGCCCGCTTCG 62.357 63.158 0.00 0.00 35.07 3.79
614 678 1.520342 CTACAGCTCTGCCCGCTTC 60.520 63.158 0.00 0.00 35.07 3.86
615 679 1.831652 AACTACAGCTCTGCCCGCTT 61.832 55.000 0.00 0.00 35.07 4.68
616 680 2.286523 AACTACAGCTCTGCCCGCT 61.287 57.895 0.00 0.00 38.49 5.52
617 681 2.103042 CAACTACAGCTCTGCCCGC 61.103 63.158 0.00 0.00 0.00 6.13
618 682 0.037326 TTCAACTACAGCTCTGCCCG 60.037 55.000 0.00 0.00 0.00 6.13
619 683 2.185004 TTTCAACTACAGCTCTGCCC 57.815 50.000 0.00 0.00 0.00 5.36
620 684 3.753272 TGATTTTCAACTACAGCTCTGCC 59.247 43.478 0.00 0.00 0.00 4.85
621 685 5.557891 ATGATTTTCAACTACAGCTCTGC 57.442 39.130 0.00 0.00 0.00 4.26
622 686 7.254387 GCTCTATGATTTTCAACTACAGCTCTG 60.254 40.741 0.00 0.00 0.00 3.35
623 687 6.760770 GCTCTATGATTTTCAACTACAGCTCT 59.239 38.462 0.00 0.00 0.00 4.09
624 688 6.760770 AGCTCTATGATTTTCAACTACAGCTC 59.239 38.462 0.00 0.00 0.00 4.09
625 689 6.538021 CAGCTCTATGATTTTCAACTACAGCT 59.462 38.462 0.00 0.00 0.00 4.24
626 690 6.713520 CAGCTCTATGATTTTCAACTACAGC 58.286 40.000 0.00 0.00 0.00 4.40
627 691 6.314648 TGCAGCTCTATGATTTTCAACTACAG 59.685 38.462 0.00 0.00 0.00 2.74
628 692 6.092670 GTGCAGCTCTATGATTTTCAACTACA 59.907 38.462 0.00 0.00 0.00 2.74
629 693 6.314896 AGTGCAGCTCTATGATTTTCAACTAC 59.685 38.462 0.00 0.00 0.00 2.73
630 694 6.409704 AGTGCAGCTCTATGATTTTCAACTA 58.590 36.000 0.00 0.00 0.00 2.24
631 695 5.251764 AGTGCAGCTCTATGATTTTCAACT 58.748 37.500 0.00 0.00 0.00 3.16
632 696 5.557891 AGTGCAGCTCTATGATTTTCAAC 57.442 39.130 0.00 0.00 0.00 3.18
633 697 6.579666 AAAGTGCAGCTCTATGATTTTCAA 57.420 33.333 0.00 0.00 0.00 2.69
634 698 6.432162 AGAAAAGTGCAGCTCTATGATTTTCA 59.568 34.615 15.78 0.00 37.69 2.69
635 699 6.850555 AGAAAAGTGCAGCTCTATGATTTTC 58.149 36.000 9.24 9.24 36.26 2.29
636 700 6.402983 CGAGAAAAGTGCAGCTCTATGATTTT 60.403 38.462 0.00 0.00 0.00 1.82
637 701 5.064452 CGAGAAAAGTGCAGCTCTATGATTT 59.936 40.000 0.00 0.00 0.00 2.17
638 702 4.569966 CGAGAAAAGTGCAGCTCTATGATT 59.430 41.667 0.00 0.00 0.00 2.57
639 703 4.118410 CGAGAAAAGTGCAGCTCTATGAT 58.882 43.478 0.00 0.00 0.00 2.45
640 704 3.515630 CGAGAAAAGTGCAGCTCTATGA 58.484 45.455 0.00 0.00 0.00 2.15
641 705 2.030213 GCGAGAAAAGTGCAGCTCTATG 59.970 50.000 0.00 0.00 0.00 2.23
642 706 2.093764 AGCGAGAAAAGTGCAGCTCTAT 60.094 45.455 0.00 0.00 0.00 1.98
643 707 1.273606 AGCGAGAAAAGTGCAGCTCTA 59.726 47.619 0.00 0.00 0.00 2.43
644 708 0.034616 AGCGAGAAAAGTGCAGCTCT 59.965 50.000 0.00 0.00 0.00 4.09
645 709 0.441921 GAGCGAGAAAAGTGCAGCTC 59.558 55.000 4.79 4.79 43.11 4.09
646 710 0.952984 GGAGCGAGAAAAGTGCAGCT 60.953 55.000 0.00 0.00 37.69 4.24
647 711 1.499502 GGAGCGAGAAAAGTGCAGC 59.500 57.895 0.00 0.00 0.00 5.25
648 712 1.630244 CGGGAGCGAGAAAAGTGCAG 61.630 60.000 0.00 0.00 0.00 4.41
649 713 1.667830 CGGGAGCGAGAAAAGTGCA 60.668 57.895 0.00 0.00 0.00 4.57
650 714 1.355066 CTCGGGAGCGAGAAAAGTGC 61.355 60.000 0.00 0.00 38.18 4.40
651 715 0.243907 TCTCGGGAGCGAGAAAAGTG 59.756 55.000 0.00 0.00 41.39 3.16
652 716 1.187087 ATCTCGGGAGCGAGAAAAGT 58.813 50.000 0.00 0.00 46.29 2.66
653 717 2.197577 GAATCTCGGGAGCGAGAAAAG 58.802 52.381 0.00 0.00 46.29 2.27
654 718 1.134788 GGAATCTCGGGAGCGAGAAAA 60.135 52.381 0.00 0.00 46.29 2.29
655 719 0.460311 GGAATCTCGGGAGCGAGAAA 59.540 55.000 0.00 0.00 46.29 2.52
656 720 0.395862 AGGAATCTCGGGAGCGAGAA 60.396 55.000 0.00 0.00 46.29 2.87
658 722 1.103987 TCAGGAATCTCGGGAGCGAG 61.104 60.000 0.00 0.00 37.35 5.03
659 723 0.683179 TTCAGGAATCTCGGGAGCGA 60.683 55.000 0.00 0.00 0.00 4.93
660 724 0.249238 CTTCAGGAATCTCGGGAGCG 60.249 60.000 0.00 0.00 0.00 5.03
661 725 0.827368 ACTTCAGGAATCTCGGGAGC 59.173 55.000 0.00 0.00 0.00 4.70
662 726 1.137872 CCACTTCAGGAATCTCGGGAG 59.862 57.143 0.00 0.00 0.00 4.30
663 727 1.195115 CCACTTCAGGAATCTCGGGA 58.805 55.000 0.00 0.00 0.00 5.14
664 728 0.179000 CCCACTTCAGGAATCTCGGG 59.821 60.000 0.00 0.00 0.00 5.14
665 729 0.905357 ACCCACTTCAGGAATCTCGG 59.095 55.000 0.00 0.00 0.00 4.63
666 730 1.406069 CCACCCACTTCAGGAATCTCG 60.406 57.143 0.00 0.00 0.00 4.04
667 731 1.065126 CCCACCCACTTCAGGAATCTC 60.065 57.143 0.00 0.00 0.00 2.75
668 732 0.995024 CCCACCCACTTCAGGAATCT 59.005 55.000 0.00 0.00 0.00 2.40
669 733 0.698818 ACCCACCCACTTCAGGAATC 59.301 55.000 0.00 0.00 0.00 2.52
670 734 1.075536 GAACCCACCCACTTCAGGAAT 59.924 52.381 0.00 0.00 0.00 3.01
671 735 0.476771 GAACCCACCCACTTCAGGAA 59.523 55.000 0.00 0.00 0.00 3.36
672 736 1.423794 GGAACCCACCCACTTCAGGA 61.424 60.000 0.00 0.00 0.00 3.86
673 737 1.074951 GGAACCCACCCACTTCAGG 59.925 63.158 0.00 0.00 0.00 3.86
674 738 4.821935 GGAACCCACCCACTTCAG 57.178 61.111 0.00 0.00 0.00 3.02
691 755 1.677637 GAGACTAGGGCCCTGTTCGG 61.678 65.000 35.81 19.66 0.00 4.30
692 756 0.970937 TGAGACTAGGGCCCTGTTCG 60.971 60.000 35.81 20.92 0.00 3.95
693 757 0.827368 CTGAGACTAGGGCCCTGTTC 59.173 60.000 35.81 27.73 0.00 3.18
694 758 0.413832 TCTGAGACTAGGGCCCTGTT 59.586 55.000 35.81 21.09 0.00 3.16
695 759 0.639392 ATCTGAGACTAGGGCCCTGT 59.361 55.000 35.81 28.09 0.00 4.00
696 760 1.691434 GAATCTGAGACTAGGGCCCTG 59.309 57.143 35.81 25.05 0.00 4.45
697 761 1.413808 GGAATCTGAGACTAGGGCCCT 60.414 57.143 31.35 31.35 0.00 5.19
698 762 1.052617 GGAATCTGAGACTAGGGCCC 58.947 60.000 16.46 16.46 0.00 5.80
699 763 2.095604 AGGAATCTGAGACTAGGGCC 57.904 55.000 0.00 0.00 0.00 5.80
700 764 5.083821 AGATAAGGAATCTGAGACTAGGGC 58.916 45.833 0.00 0.00 43.62 5.19
879 1022 0.589223 GATGTGCGACGTGGGAAAAA 59.411 50.000 0.00 0.00 0.00 1.94
905 1048 3.723348 GCAACGGGACAGAACGGC 61.723 66.667 0.00 0.00 0.00 5.68
974 1145 4.453480 TGGAATAATTGGGGATGGAGAC 57.547 45.455 0.00 0.00 0.00 3.36
976 1147 3.897505 GGTTGGAATAATTGGGGATGGAG 59.102 47.826 0.00 0.00 0.00 3.86
988 1159 1.040339 GGCGGCATGGGTTGGAATAA 61.040 55.000 3.07 0.00 0.00 1.40
1441 1644 0.886563 CGGTAGAAGGACTCGTTGGT 59.113 55.000 0.00 0.00 0.00 3.67
1742 1948 0.244450 AAAATCATGGTGGCGCTGTG 59.756 50.000 7.64 0.00 0.00 3.66
1956 2287 4.637534 ACAATATCTGTGTCCAATCAGCAC 59.362 41.667 0.00 0.00 36.69 4.40
1994 2347 4.293415 CAAGAAACCAAGCAAGCACTAAG 58.707 43.478 0.00 0.00 0.00 2.18
1996 2367 2.622942 CCAAGAAACCAAGCAAGCACTA 59.377 45.455 0.00 0.00 0.00 2.74
2092 2668 9.393249 CGTTGTTGACTAATTCACAAATGTATT 57.607 29.630 0.00 0.00 32.26 1.89
2094 2670 6.853872 GCGTTGTTGACTAATTCACAAATGTA 59.146 34.615 0.00 0.00 32.26 2.29
2096 2672 5.914635 AGCGTTGTTGACTAATTCACAAATG 59.085 36.000 0.00 0.00 32.26 2.32
2099 2675 6.795098 ATAGCGTTGTTGACTAATTCACAA 57.205 33.333 0.00 0.00 32.26 3.33
2100 2676 6.425417 TGAATAGCGTTGTTGACTAATTCACA 59.575 34.615 0.00 0.00 32.26 3.58
2101 2677 6.827641 TGAATAGCGTTGTTGACTAATTCAC 58.172 36.000 0.00 0.00 32.26 3.18
2187 2768 1.506493 AAGAGCATTGATCGGCGATC 58.494 50.000 36.07 36.07 39.31 3.69
2322 3074 8.493547 CATGTGCATCAACACTCAATATAGTAG 58.506 37.037 0.00 0.00 41.30 2.57
2323 3075 7.442062 CCATGTGCATCAACACTCAATATAGTA 59.558 37.037 0.00 0.00 41.30 1.82
2324 3076 6.261603 CCATGTGCATCAACACTCAATATAGT 59.738 38.462 0.00 0.00 41.30 2.12
2325 3077 6.261603 ACCATGTGCATCAACACTCAATATAG 59.738 38.462 0.00 0.00 41.30 1.31
2328 3080 4.334552 ACCATGTGCATCAACACTCAATA 58.665 39.130 0.00 0.00 41.30 1.90
2331 3083 2.275134 ACCATGTGCATCAACACTCA 57.725 45.000 0.00 0.00 41.30 3.41
2332 3084 4.970662 ATTACCATGTGCATCAACACTC 57.029 40.909 0.00 0.00 41.30 3.51
2397 3261 1.602377 GATGCTTGGCAATACCGGTAC 59.398 52.381 18.55 4.55 43.62 3.34
2417 3281 0.029834 GAACGCCATAAGCTGCCATG 59.970 55.000 0.00 0.07 40.39 3.66
2450 3314 5.398467 GCCCTATTCTCTCCAGGAAAAGATT 60.398 44.000 2.65 2.76 0.00 2.40
2451 3315 4.103943 GCCCTATTCTCTCCAGGAAAAGAT 59.896 45.833 2.65 0.00 0.00 2.40
2453 3317 3.200825 TGCCCTATTCTCTCCAGGAAAAG 59.799 47.826 0.00 0.00 0.00 2.27
2458 3322 0.761802 GGTGCCCTATTCTCTCCAGG 59.238 60.000 0.00 0.00 0.00 4.45
2459 3323 1.500474 TGGTGCCCTATTCTCTCCAG 58.500 55.000 0.00 0.00 0.00 3.86
2461 3325 1.475930 GCTTGGTGCCCTATTCTCTCC 60.476 57.143 0.00 0.00 35.15 3.71
2463 3327 1.589414 AGCTTGGTGCCCTATTCTCT 58.411 50.000 0.00 0.00 44.23 3.10
2465 3329 1.141858 GCTAGCTTGGTGCCCTATTCT 59.858 52.381 7.70 0.00 44.23 2.40
2492 3386 6.127591 ACGAACAGAGCTGATAAGATAGTTGT 60.128 38.462 4.21 0.00 0.00 3.32
2522 3416 5.063438 TGTGCTGTTAGATCATAGTTTTCGC 59.937 40.000 0.00 0.00 0.00 4.70
2523 3417 6.647212 TGTGCTGTTAGATCATAGTTTTCG 57.353 37.500 0.00 0.00 0.00 3.46
2543 3440 3.928375 GGCCAAAATCTAACAGCAATGTG 59.072 43.478 0.00 0.00 0.00 3.21
2567 3466 7.965107 GCATACATTTGTAGTCTTCTGAAAAGG 59.035 37.037 0.00 0.00 33.52 3.11
2578 3477 5.734855 AACGGATGCATACATTTGTAGTC 57.265 39.130 10.18 0.00 36.35 2.59
2593 3505 2.549754 GTGATGCCAGGATTAACGGATG 59.450 50.000 0.00 0.00 0.00 3.51
2619 3531 7.222872 ACTCCAATCTCCACATTTAGATCATC 58.777 38.462 0.00 0.00 31.20 2.92
2648 3560 7.482654 TCCTAGAATACATTTCATTGAAGCG 57.517 36.000 0.00 0.00 0.00 4.68
2649 3561 7.806960 GCATCCTAGAATACATTTCATTGAAGC 59.193 37.037 0.00 0.00 0.00 3.86
2650 3562 8.843262 TGCATCCTAGAATACATTTCATTGAAG 58.157 33.333 0.00 0.00 0.00 3.02
2651 3563 8.750515 TGCATCCTAGAATACATTTCATTGAA 57.249 30.769 0.00 0.00 0.00 2.69
2653 3565 9.406828 CAATGCATCCTAGAATACATTTCATTG 57.593 33.333 0.00 0.00 32.95 2.82
2667 3587 1.884579 GATGGTGGCAATGCATCCTAG 59.115 52.381 7.79 0.00 0.00 3.02
2674 3594 1.011333 GCAATTGATGGTGGCAATGC 58.989 50.000 10.34 0.00 36.20 3.56
2693 3613 3.914364 GCAGCAGTTAAATTTCAGGTTCG 59.086 43.478 0.00 0.00 0.00 3.95
2697 3617 3.507233 TCCAGCAGCAGTTAAATTTCAGG 59.493 43.478 0.00 0.00 0.00 3.86
2712 3632 6.378280 ACTGGTTAATTAGGAAAATCCAGCAG 59.622 38.462 0.00 8.80 43.15 4.24
2846 3783 7.687005 TTTTGCGGTTTATGAAGTAACAAAG 57.313 32.000 0.00 0.00 0.00 2.77
2872 3841 7.029563 CCCTGCATAAAAAGTGTCTGTAAATC 58.970 38.462 0.00 0.00 0.00 2.17
2977 3959 4.553330 TTGGAGCGAGGAAATAAGAACT 57.447 40.909 0.00 0.00 0.00 3.01
3046 4040 7.827819 TGAGGTAAACAAACGATCTGATTAG 57.172 36.000 0.00 0.00 0.00 1.73
3065 4067 8.623903 CAATATAACACATTAGCAACATGAGGT 58.376 33.333 0.00 0.00 0.00 3.85
3397 4432 4.164988 AGGTCCTAGCATCTGCAATTTACT 59.835 41.667 4.79 0.00 45.16 2.24
3418 4453 6.409704 TCAGAAATACAGTTGAGAATGGAGG 58.590 40.000 0.00 0.00 0.00 4.30
3552 4621 2.230508 CTGCTCAACCCGTCTGTAGTTA 59.769 50.000 0.00 0.00 0.00 2.24
3657 4726 0.170561 CGTACACCAGGAGAAGGTCG 59.829 60.000 0.00 0.00 37.23 4.79
3948 5017 1.582610 GGTACACGGGGTCGACGTAA 61.583 60.000 9.92 0.00 43.58 3.18
4062 5131 3.055094 GGTTGATCTCACTTTGGCTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
4071 5140 1.067295 TGGCCAGGTTGATCTCACTT 58.933 50.000 0.00 0.00 0.00 3.16
4126 5195 2.778299 CTCCGGATCAACCAACTGAAA 58.222 47.619 3.57 0.00 38.90 2.69
4350 5419 1.666888 GGCGAAAACTGCAGGTCATTG 60.667 52.381 19.93 9.44 0.00 2.82
4351 5420 0.598065 GGCGAAAACTGCAGGTCATT 59.402 50.000 19.93 2.95 0.00 2.57
4484 5557 6.834168 TGCTATATACAACTCATCCGATCA 57.166 37.500 0.00 0.00 0.00 2.92
4586 5662 5.018809 ACACCTACCATTTGAATCATTGCT 58.981 37.500 0.00 0.00 0.00 3.91
4667 5762 7.579726 ACTTCTGAATTCAATCTTTTCGTCAG 58.420 34.615 9.88 0.00 34.01 3.51
4792 5887 0.746063 TGCCAAACAGACCAGCAAAG 59.254 50.000 0.00 0.00 0.00 2.77
4834 5929 0.453390 CCTGCCCGCAGAAAGAATTC 59.547 55.000 18.19 0.00 46.30 2.17
4838 5933 2.769652 AATGCCTGCCCGCAGAAAGA 62.770 55.000 18.19 0.00 46.30 2.52
4846 5941 1.733360 CAAATTTCAAATGCCTGCCCG 59.267 47.619 0.00 0.00 0.00 6.13
4848 5943 3.056588 TCCAAATTTCAAATGCCTGCC 57.943 42.857 0.00 0.00 0.00 4.85
4917 6012 7.882791 TGCAGATTTCAGAAGAAAATGTACCTA 59.117 33.333 0.00 0.00 46.06 3.08
4944 6039 2.498167 CCTTGGTCTCTTGTGTCCTTG 58.502 52.381 0.00 0.00 0.00 3.61
4980 6088 2.740714 GCAGCACGACCGACATTCC 61.741 63.158 0.00 0.00 0.00 3.01
5025 6133 2.093447 AGCCTCTGATACCAAAAGGTCG 60.093 50.000 0.00 0.00 0.00 4.79
5076 7139 4.394920 TCCGTCAAATAAGGAAATGAGCAC 59.605 41.667 0.00 0.00 32.21 4.40
5103 7167 3.244078 CGATCCTTCCACCATTTCGGATA 60.244 47.826 0.00 0.00 38.63 2.59
5111 7175 2.747177 TCACTACGATCCTTCCACCAT 58.253 47.619 0.00 0.00 0.00 3.55
5240 7304 8.554490 ACTAAATGAGACCAGGTATCAACTAT 57.446 34.615 20.84 9.72 37.33 2.12
5294 7358 7.212976 TCTTGAGATGGTGCTCATACTTATTC 58.787 38.462 0.00 0.00 43.84 1.75
5304 7368 3.935828 GGTAGTTTCTTGAGATGGTGCTC 59.064 47.826 0.00 0.00 35.46 4.26
5305 7369 3.307762 GGGTAGTTTCTTGAGATGGTGCT 60.308 47.826 0.00 0.00 0.00 4.40
5306 7370 3.010420 GGGTAGTTTCTTGAGATGGTGC 58.990 50.000 0.00 0.00 0.00 5.01
5307 7371 4.286297 TGGGTAGTTTCTTGAGATGGTG 57.714 45.455 0.00 0.00 0.00 4.17
5308 7372 4.993705 TTGGGTAGTTTCTTGAGATGGT 57.006 40.909 0.00 0.00 0.00 3.55
5309 7373 4.459337 GGTTTGGGTAGTTTCTTGAGATGG 59.541 45.833 0.00 0.00 0.00 3.51
5310 7374 4.154195 CGGTTTGGGTAGTTTCTTGAGATG 59.846 45.833 0.00 0.00 0.00 2.90
5311 7375 4.041198 TCGGTTTGGGTAGTTTCTTGAGAT 59.959 41.667 0.00 0.00 0.00 2.75
5312 7376 3.388676 TCGGTTTGGGTAGTTTCTTGAGA 59.611 43.478 0.00 0.00 0.00 3.27
5313 7377 3.735591 TCGGTTTGGGTAGTTTCTTGAG 58.264 45.455 0.00 0.00 0.00 3.02
5314 7378 3.842007 TCGGTTTGGGTAGTTTCTTGA 57.158 42.857 0.00 0.00 0.00 3.02
5315 7379 4.096682 TGTTTCGGTTTGGGTAGTTTCTTG 59.903 41.667 0.00 0.00 0.00 3.02
5316 7380 4.271661 TGTTTCGGTTTGGGTAGTTTCTT 58.728 39.130 0.00 0.00 0.00 2.52
5317 7381 3.888583 TGTTTCGGTTTGGGTAGTTTCT 58.111 40.909 0.00 0.00 0.00 2.52
5318 7382 4.635833 TTGTTTCGGTTTGGGTAGTTTC 57.364 40.909 0.00 0.00 0.00 2.78
5319 7383 5.601583 ATTTGTTTCGGTTTGGGTAGTTT 57.398 34.783 0.00 0.00 0.00 2.66
5320 7384 5.278610 GCTATTTGTTTCGGTTTGGGTAGTT 60.279 40.000 0.00 0.00 0.00 2.24
5321 7385 4.216902 GCTATTTGTTTCGGTTTGGGTAGT 59.783 41.667 0.00 0.00 0.00 2.73
5322 7386 4.380128 GGCTATTTGTTTCGGTTTGGGTAG 60.380 45.833 0.00 0.00 0.00 3.18
5323 7387 3.506844 GGCTATTTGTTTCGGTTTGGGTA 59.493 43.478 0.00 0.00 0.00 3.69
5324 7388 2.297880 GGCTATTTGTTTCGGTTTGGGT 59.702 45.455 0.00 0.00 0.00 4.51
5325 7389 2.297597 TGGCTATTTGTTTCGGTTTGGG 59.702 45.455 0.00 0.00 0.00 4.12
5326 7390 3.651803 TGGCTATTTGTTTCGGTTTGG 57.348 42.857 0.00 0.00 0.00 3.28
5327 7391 6.310224 CCTATTTGGCTATTTGTTTCGGTTTG 59.690 38.462 0.00 0.00 0.00 2.93
5328 7392 6.394809 CCTATTTGGCTATTTGTTTCGGTTT 58.605 36.000 0.00 0.00 0.00 3.27
5329 7393 5.961272 CCTATTTGGCTATTTGTTTCGGTT 58.039 37.500 0.00 0.00 0.00 4.44
5330 7394 5.576447 CCTATTTGGCTATTTGTTTCGGT 57.424 39.130 0.00 0.00 0.00 4.69
5344 7408 7.498900 TGATATTTAGTGACTGTGCCTATTTGG 59.501 37.037 0.00 0.00 39.35 3.28
5345 7409 8.437360 TGATATTTAGTGACTGTGCCTATTTG 57.563 34.615 0.00 0.00 0.00 2.32
5346 7410 9.113838 CTTGATATTTAGTGACTGTGCCTATTT 57.886 33.333 0.00 0.00 0.00 1.40
5347 7411 7.227512 GCTTGATATTTAGTGACTGTGCCTATT 59.772 37.037 0.00 0.00 0.00 1.73
5348 7412 6.708054 GCTTGATATTTAGTGACTGTGCCTAT 59.292 38.462 0.00 0.00 0.00 2.57
5349 7413 6.049149 GCTTGATATTTAGTGACTGTGCCTA 58.951 40.000 0.00 0.00 0.00 3.93
5350 7414 4.878397 GCTTGATATTTAGTGACTGTGCCT 59.122 41.667 0.00 0.00 0.00 4.75
5351 7415 4.878397 AGCTTGATATTTAGTGACTGTGCC 59.122 41.667 0.00 0.00 0.00 5.01
5352 7416 6.980978 TCTAGCTTGATATTTAGTGACTGTGC 59.019 38.462 0.00 0.00 0.00 4.57
5353 7417 9.539825 AATCTAGCTTGATATTTAGTGACTGTG 57.460 33.333 11.15 0.00 0.00 3.66
5363 7427 8.907885 GGGTTCTTCAAATCTAGCTTGATATTT 58.092 33.333 11.15 1.27 32.98 1.40
5364 7428 8.055181 TGGGTTCTTCAAATCTAGCTTGATATT 58.945 33.333 11.15 5.63 32.98 1.28
5365 7429 7.577303 TGGGTTCTTCAAATCTAGCTTGATAT 58.423 34.615 11.15 0.00 32.98 1.63
5366 7430 6.957631 TGGGTTCTTCAAATCTAGCTTGATA 58.042 36.000 11.15 0.00 32.98 2.15
5367 7431 5.819991 TGGGTTCTTCAAATCTAGCTTGAT 58.180 37.500 4.71 4.71 32.98 2.57
5368 7432 5.241403 TGGGTTCTTCAAATCTAGCTTGA 57.759 39.130 0.00 0.00 0.00 3.02
5369 7433 5.416952 ACATGGGTTCTTCAAATCTAGCTTG 59.583 40.000 0.00 0.00 0.00 4.01
5370 7434 5.574188 ACATGGGTTCTTCAAATCTAGCTT 58.426 37.500 0.00 0.00 0.00 3.74
5371 7435 5.184892 ACATGGGTTCTTCAAATCTAGCT 57.815 39.130 0.00 0.00 0.00 3.32
5372 7436 8.677148 TTATACATGGGTTCTTCAAATCTAGC 57.323 34.615 0.00 0.00 0.00 3.42
5375 7439 9.178758 GACTTTATACATGGGTTCTTCAAATCT 57.821 33.333 0.00 0.00 0.00 2.40
5376 7440 9.178758 AGACTTTATACATGGGTTCTTCAAATC 57.821 33.333 0.00 0.00 0.00 2.17
5377 7441 9.533831 AAGACTTTATACATGGGTTCTTCAAAT 57.466 29.630 0.00 0.00 0.00 2.32
5378 7442 8.792633 CAAGACTTTATACATGGGTTCTTCAAA 58.207 33.333 0.00 0.00 0.00 2.69
5379 7443 7.942341 ACAAGACTTTATACATGGGTTCTTCAA 59.058 33.333 0.00 0.00 0.00 2.69
5380 7444 7.458397 ACAAGACTTTATACATGGGTTCTTCA 58.542 34.615 0.00 0.00 0.00 3.02
5381 7445 7.923414 ACAAGACTTTATACATGGGTTCTTC 57.077 36.000 0.00 0.00 0.00 2.87
5382 7446 8.380099 TGTACAAGACTTTATACATGGGTTCTT 58.620 33.333 0.00 0.00 0.00 2.52
5383 7447 7.913789 TGTACAAGACTTTATACATGGGTTCT 58.086 34.615 0.00 0.00 0.00 3.01
5384 7448 8.732746 ATGTACAAGACTTTATACATGGGTTC 57.267 34.615 16.16 0.00 36.99 3.62
5412 7476 9.177608 CCTAAGAAAGTTCCATCATAACATCAA 57.822 33.333 0.00 0.00 0.00 2.57
5413 7477 8.548025 TCCTAAGAAAGTTCCATCATAACATCA 58.452 33.333 0.00 0.00 0.00 3.07
5414 7478 8.964476 TCCTAAGAAAGTTCCATCATAACATC 57.036 34.615 0.00 0.00 0.00 3.06
5415 7479 9.753674 TTTCCTAAGAAAGTTCCATCATAACAT 57.246 29.630 0.00 0.00 37.07 2.71
5416 7480 9.581289 TTTTCCTAAGAAAGTTCCATCATAACA 57.419 29.630 0.00 0.00 42.78 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.